Psyllid ID: psy952

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570---
Protein Sequence
MPGWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEcccEEEEEEcccccEEEEccccccEEEEEEEccccEEEEEEcccccEEEEEccccccEEEEccccccccEEEEEcccccEEEEcccccEEEEEEcccccEEEEcccccccEEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEcccccccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEcccccccEEEEEEEccEEEEEccccccEEEEccccccccEEEccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccEEcccccEEccccccccccccccccccccccccccccccccEEcccccccEEccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccEEEEEcccEEEEEEcccccccccccccccEEEEEEEccccEEEEEEccccEEEEEEccccccEEEEEcccccccEEEEEEccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEcccccEEEEEcccccccEEEEEccccccEEEEEcccccccccEEEEEccccEEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEccEEEEEEccccEEEEEEccccccEEEEEEcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEcccccEccccEEcccccccccccccccccccccccccccccccccEEccccccEEccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEHHHcccccccccccHHHcHHHHcccccccccEEcccccccEEccccEEccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccEccccccEccccEEccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpgwdestckrrdsikpwlifSNKYYVRNMSLDATQYSLVHQDLLNVVAMdfhykenrfYFADVAAKTIYrsrvgstekervirhdshgleglavdWVGRKLYWLDRHSKQLDVAELDGTNRKTLKtaiqdprgitlhpgigyvYFSSWNLQAYIGkigmdgsnftriltheddiawpnaltldyFTERLYWADAHLDYIAsvdldgkhkhivisgqKVPHVFALTLFedhiywtdwntksinradkfngrdyrvlrntthrpydihvyhplkgttrhawltahrgsttVADMIRSVYlgsgnkenstcsssqfrcnngkcidyhlvcnkesdceddsdeplhcnvdecakvetnqcghkcvdtltgyycecntgyklledgkactdidecieqpgvcsqypamchnrpcdkdtefacrnghcipklwvcdfdndcgddsdepaymcrqrnctkgwercpgktnyrcipkwlfcdgkddcrdgsdelpqncpleslgsvcngvndckdnitsdetharcpsnitcpphhlkcantnicvepywlcdgdndcgdmsdedplhcqqrtcpqnsfr
Flexible Loop (DISEMBL)
mpgwdestckrrdsikpwlIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTiyrsrvgstekervirhdshgleglavdWVGRKLYWLDRHSKQldvaeldgtnrktlktaiqdprgitlHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYwtdwntksinradkfngrDYRVlrntthrpydihvyhplkgttRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRnctkgwercpgktnyRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDplhcqqrtcpqnsfr
Low Complexity Region (SEG)
MPGWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCdfdndcgddsdEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR
Disordered region (IsUnstruct)
*************SIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSG*********SQFRCNNGKCIDYHLVCNKESDC******PLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCR********NCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDC**********************
Disordered Region (DISOPRED)
MPGWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVC**********DEPLHCNVDECAKVET*QCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC*QRTC****F*
Disordered Region (DISEMBL)
**********RRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSG*********SQFRCNNGKCIDYHLVCNKES********PLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR
Disordered Region (DISPRO)
MPGWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCP*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPGWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	573	2.2.26 [Sep-21-2011]
A2ARV4	4660	Low-density lipoprotein r	yes	N/A	0.968	0.119	0.389	1e-109
P98164	4655	Low-density lipoprotein r	yes	N/A	0.973	0.119	0.384	1e-108
P98158	4660	Low-density lipoprotein r	yes	N/A	0.968	0.119	0.386	1e-108
P98157	4543	Low-density lipoprotein r	no	N/A	0.916	0.115	0.386	5e-98
Q07954	4544	Prolow-density lipoprotei	no	N/A	0.921	0.116	0.386	8e-98
Q91ZX7	4545	Prolow-density lipoprotei	no	N/A	0.923	0.116	0.380	2e-97
Q04833	4753	Low-density lipoprotein r	yes	N/A	0.928	0.111	0.347	2e-86
Q9NZR2	4599	Low-density lipoprotein r	no	N/A	0.935	0.116	0.331	2e-70
Q9JI18	4599	Low-density lipoprotein r	no	N/A	0.919	0.114	0.336	9e-69
Q95209	2213	Sortilin-related receptor	no	N/A	0.912	0.236	0.298	5e-62

>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 250/642 (38%), Positives = 339/642 (52%), Gaps = 87/642 (13%)

Query: 2    PGW----DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKEN 57
            PG+    D  +C++  +I+P+L+FSN+YY+RN+++D T YSL+ Q L NVVA+DF   E 
Sbjct: 3182 PGYIREPDGKSCRQNSNIEPYLVFSNRYYIRNLTIDGTSYSLILQGLGNVVALDFDRVEE 3241

Query: 58   RFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117
            R Y+ D   + I R  +  T +E +I H     E LAVDWV RKLYWLD     L V++L
Sbjct: 3242 RLYWIDAEKQIIERMFLNKTNQETIISHRLRRAESLAVDWVSRKLYWLDAILDCLFVSDL 3301

Query: 118  DGTNRKTLKT---------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI 168
            +G  RK L             ++PRGI LHP  GYVY++ W   AYI +IGMDG+N T I
Sbjct: 3302 EGRQRKMLAQHCVDANNTFCFENPRGIVLHPQRGYVYWADWGDHAYIARIGMDGTNKTVI 3361

Query: 169  LTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF 228
            ++ +  I WPNA+T+DY  + LYWADAHL YI   DL+G H+H V  G  +PH FALT+F
Sbjct: 3362 ISTK--IEWPNAITIDYTNDLLYWADAHLGYIEFSDLEGHHRHTVYDG-TLPHPFALTIF 3418

Query: 229  EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTT 276
            ED ++WTDWNT+++ + +K++G    VL NTTH+P+DIHV HP +            G  
Sbjct: 3419 EDTVFWTDWNTRTVEKGNKYDGSGRVVLVNTTHKPFDIHVLHPYRQPIMSNPCATNNGGC 3478

Query: 277  RHAWL--TAHRGST-TVADMIRSVYLGSGNKENSTCSSSQFRC-NNGKCIDYHLVCNKES 332
             H  L     RG T    D  ++V L         CSS+QF C NN KCI     C+ + 
Sbjct: 3479 SHLCLIKAGGRGFTCECPDDFQTVQLRDRTLCMPMCSSTQFLCGNNEKCIPIWWKCDGQK 3538

Query: 333  DCEDDSDEPLHCNVDECAKVETNQC--------------GHKCVD-------TLTGYYCE 371
            DC D SDE   C    C ++   QC                 C D           + CE
Sbjct: 3539 DCSDGSDESDLCPHRFC-RLGQFQCRDGNCTSPQALCNARQDCADGSDEDRVLCEHHRCE 3597

Query: 372  CN----TGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKL 427
             N       + + +   C  +D+C++      + P+ C +R C +  +F C NG CIP+ 
Sbjct: 3598 ANEWQCANKRCIPEYWQCDSVDDCLDNS---DEDPSHCASRTC-RPGQFKCNNGRCIPQS 3653

Query: 428  WVCDFDNDCGDDSDEPAYMCRQR--NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSD 485
            W CD DNDCGD SDEP + C     NC    E    KTNYRCIP+W  C+G DDCRD SD
Sbjct: 3654 WKCDVDNDCGDYSDEPIHECMTAAYNCDNHTEF-SCKTNYRCIPQWAVCNGFDDCRDNSD 3712

Query: 486  ELP-QNCPLESLGSV-------------CNGVNDCKDNITSDETHARCPSNITCPPHHLK 531
            E   ++ P    G               C+G++DC DN   +    R      C     +
Sbjct: 3713 EQGCESVPCHPSGDFRCGNHHCIPLRWKCDGIDDCGDNSDEESCVPR-----ECTESEFR 3767

Query: 532  CANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
            CA+   C+   W+CD +NDCGD SDE    C+ +TC    F+
Sbjct: 3768 CADQQ-CIPSRWVCDQENDCGDNSDE--RDCEMKTCHPEHFQ 3806

Acts together with cubilin to mediate HDL endocytosis.
Mus musculus (taxid: 10090)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score =  394 bits (1012), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 246/639 (38%), Positives = 331/639 (51%), Gaps = 81/639 (12%)

Query: 2    PGW----DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKEN 57
            PG+    D  TC++  +I+P+LIFSN+YY+RN+++D   YSL+ + L NVVA+DF   E 
Sbjct: 3180 PGYLREPDGKTCRQNSNIEPYLIFSNRYYLRNLTIDGYFYSLILEGLDNVVALDFDRVEK 3239

Query: 58   RFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117
            R Y+ D   + I R  +  T KE +I H     E LAVDWV RKLYWLD     L V++L
Sbjct: 3240 RLYWIDTQRQVIERMFLNKTNKETIINHRLPAAESLAVDWVSRKLYWLDARLDGLFVSDL 3299

Query: 118  DGTNRKTLKT---------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI 168
            +G +R+ L              +PRG+ LHP  GY+Y++ W  +AYIG++GMDG+N + I
Sbjct: 3300 NGGHRRMLAQHCVDANNTFCFDNPRGLALHPQYGYLYWADWGHRAYIGRVGMDGTNKSVI 3359

Query: 169  LTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF 228
            ++ +  + WPN +T+DY  + LYWADAHL YI   DL+G H+H V  G  +PH FA+T+F
Sbjct: 3360 ISTK--LEWPNGITIDYTNDLLYWADAHLGYIEYSDLEGHHRHTVYDG-ALPHPFAITIF 3416

Query: 229  EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTT 276
            ED IYWTDWNT+++ + +K++G + + L NTTHRP+DIHVYHP +            G  
Sbjct: 3417 EDTIYWTDWNTRTVEKGNKYDGSNRQTLVNTTHRPFDIHVYHPYRQPIVSNPCGTNNGGC 3476

Query: 277  RHAWLTAHRG---STTVADMIRSVYLGSGNKENSTCSSSQFRC-NNGKCIDYHLVCNKES 332
             H  L    G   +    D  R++ L         CSS+QF C NN KCI     C+ + 
Sbjct: 3477 SHLCLIKPGGKGFTCECPDDFRTLQLSGSTYCMPMCSSTQFLCANNEKCIPIWWKCDGQK 3536

Query: 333  DCEDDSDEPLHCNVDECAKVETNQCGHKCV--DTLTGYYCECNTGY---KLLEDGKACTD 387
            DC D SDE   C    C   +       C    TL   +  C  G    +LL +   C  
Sbjct: 3537 DCSDGSDELALCPQRFCRLGQFQCSDGNCTSPQTLCNAHQNCPDGSDEDRLLCENHHCDS 3596

Query: 388  ID------ECIEQPGVCSQY----------PAMCHNRPCDKDTEFACRNGHCIPKLWVCD 431
             +       CI +   C  +           + C +R C +  +F C NG CIP+ W CD
Sbjct: 3597 NEWQCANKRCIPESWQCDTFNDCEDNSDEDSSHCASRTC-RPGQFRCANGRCIPQAWKCD 3655

Query: 432  FDNDCGDDSDEPAYMCRQR-NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQN 490
             DNDCGD SDEP   C    +    +     KTNYRCIPKW  C+G DDCRD SDE  Q 
Sbjct: 3656 VDNDCGDHSDEPIEECMSSAHLCDNFTEFSCKTNYRCIPKWAVCNGVDDCRDNSDE--QG 3713

Query: 491  CPLESLGSV----------------CNGVNDCKDNITSDETHARCPSNITCPPHHLKCAN 534
            C   +   V                C+G NDC DN   +    R      C     +C N
Sbjct: 3714 CEERTCHPVGDFRCKNHHCIPLRWQCDGQNDCGDNSDEENCAPR-----ECTESEFRCVN 3768

Query: 535  TNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
               C+   W+CD  NDCGD SDE    C+ RTC    F+
Sbjct: 3769 QQ-CIPSRWICDHYNDCGDNSDE--RDCEMRTCHPEYFQ 3804

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 248/642 (38%), Positives = 338/642 (52%), Gaps = 87/642 (13%)

Query: 2    PGW----DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKEN 57
            PG+    D  +C++  +I+P+LIFSN+YY+RN++ D + YSL+ Q L NVVA+DF   E 
Sbjct: 3182 PGYIREPDGKSCRQNSNIEPYLIFSNRYYIRNLTTDGSSYSLILQGLGNVVALDFDRVEK 3241

Query: 58   RFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117
            R Y+ D   + I R  +  T +E +I H     E LAVDWV RKLYWLD     L V++L
Sbjct: 3242 RLYWIDAEKQIIERMFLNKTNRETIINHRLRRAESLAVDWVSRKLYWLDAILDCLFVSDL 3301

Query: 118  DGTNRKTLKT---------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI 168
            +G +RK +             + PRGI LHP  G+VY++ W + AYIG+IGMDG+N + I
Sbjct: 3302 EGRHRKMIAQHCVDANNTFCFEHPRGIVLHPQRGHVYWADWGVHAYIGRIGMDGTNKSVI 3361

Query: 169  LTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF 228
            ++ +  I WPNA+T+DY  + LYWADAHL YI   DL+G H+H V  G  +PH FALT+F
Sbjct: 3362 ISTK--IEWPNAITIDYTNDLLYWADAHLGYIEFSDLEGHHRHTVYDG-SLPHPFALTIF 3418

Query: 229  EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTT 276
            ED ++WTDWNT+++ + +K++G    VL NTTH+P+DIHVYHP +            G  
Sbjct: 3419 EDTVFWTDWNTRTVEKGNKYDGSGRVVLVNTTHKPFDIHVYHPYRQPIMSNPCGTNNGGC 3478

Query: 277  RHAWL--TAHRGST-TVADMIRSVYLGSGNKENSTCSSSQFRC-NNGKCIDYHLVCNKES 332
             H  L     RG T    D  ++V L         CSS+QF C NN KCI     C+ + 
Sbjct: 3479 SHLCLIKAGGRGFTCACPDDFQTVQLRDRTLCMPMCSSTQFLCGNNEKCIPIWWKCDGQK 3538

Query: 333  DCEDDSDEPLHCNVDECAKVETNQC--------------GHKCVD-------TLTGYYCE 371
            DC D SDEP  C    C ++   QC                 C D           + CE
Sbjct: 3539 DCSDGSDEPDLCPHRFC-RLGQFQCRDGNCTSPQALCNARQDCADGSDEDRVLCEHHRCE 3597

Query: 372  CN----TGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKL 427
             N       + +     C  +++C++      +  + C +R C +  +F C NG CIP+ 
Sbjct: 3598 SNEWQCANKRCIPQSWQCDSVNDCLDNS---DEDTSHCASRTC-RPGQFKCNNGRCIPQS 3653

Query: 428  WVCDFDNDCGDDSDEPAYMCRQR--NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSD 485
            W CD DNDCGD SDEP   C     NC    E    KTNYRCIP+W  C+G DDCRD SD
Sbjct: 3654 WKCDVDNDCGDYSDEPIDECTTAAYNCDNHTEF-SCKTNYRCIPQWAVCNGFDDCRDNSD 3712

Query: 486  ELP-QNCPLESLGSV-------------CNGVNDCKDNITSDETHARCPSNITCPPHHLK 531
            E   ++ P    G               C+G +DC DN   +    R      C     +
Sbjct: 3713 EQGCESVPCHPSGDFRCANHHCIPLRWKCDGTDDCGDNSDEENCVPR-----ECSESEFR 3767

Query: 532  CANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
            CA+   C+   W+CD +NDCGD SDE    C+ +TC    F+
Sbjct: 3768 CADQQ-CIPSRWVCDQENDCGDNSDE--RDCEMKTCHPEHFQ 3806

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.

Rattus norvegicus (taxid: 10116)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score =  358 bits (920), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 233/603 (38%), Positives = 318/603 (52%), Gaps = 78/603 (12%)

Query: 7    STCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA 66
            ++CK     +P+LIF+N+YY+R ++LD + Y+L+ Q L N VA+DF Y+E   Y+ DV  
Sbjct: 3016 TSCKAVTDEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWTDVTT 3075

Query: 67   K--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
            +   I R  +  +  + + R      +GLAVDWVG  LYW D+    ++V++L+G  R  
Sbjct: 3076 QGSMIRRMHINGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTV 3135

Query: 125  L-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
            L  + +++PR + +    GY+Y++ W   + IGKIGMDG+N + I+  +  I WPN LTL
Sbjct: 3136 LVNSGLREPRALVVDVQNGYLYWTDWGDHSLIGKIGMDGTNRSVIV--DTKITWPNGLTL 3193

Query: 184  DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSIN 243
            DY   R+YWADA  DYI    LDG ++H V+S Q +PH+FALTLFED+IYWTDW TKSIN
Sbjct: 3194 DYINSRIYWADAREDYIEFASLDGSNRHTVLS-QDIPHIFALTLFEDYIYWTDWETKSIN 3252

Query: 244  RADKFNGRDYRVLRNTTHRPYDIHVYHPLKG--TTRHAWLTAHRGSTTVADMI------- 294
            RA K  G +  +L +T HRP DIH+YHP +      H   T + G + +  +        
Sbjct: 3253 RAHKTTGANKTLLISTLHRPMDIHIYHPYRQPDVPNHPCKTNNAGCSNLCLLSPGGGHKC 3312

Query: 295  ---RSVYLGSGNKE-NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECA 350
                + YLGS  K   S C++SQF C N KCI +   C+ E DC D SDEP  C   +C 
Sbjct: 3313 ACPTNFYLGSDGKTCVSNCTASQFVCKNDKCIPFWWKCDTEDDCGDRSDEPEDCPEFKCR 3372

Query: 351  KVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQ----YPAM-- 404
              +  QC    + T   + C+ +   +   D   C DI  C+     C+      P +  
Sbjct: 3373 PGQF-QCSTG-ICTNPAFICDGDNDCQDNSDEANC-DIHVCLPSQFKCTNTNRCIPGIFR 3429

Query: 405  ------CHNRPCDKD--------TEFACR-NGHCIPKLWVCDFDNDCGDDSDEPAYMCRQ 449
                  C +   +KD         +F C     CIP++WVCD DNDC D SDEPA  C Q
Sbjct: 3430 CNGQDNCGDGEDEKDCPEVTCAPNQFQCAITKRCIPRVWVCDRDNDCVDGSDEPAN-CTQ 3488

Query: 450  RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDN 509
              C     RC  K + RCIP    CDG+DDC DGSDE  + C                  
Sbjct: 3489 MTCGVDEFRC--KDSGRCIPARWKCDGEDDCGDGSDEPKEEC------------------ 3528

Query: 510  ITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQ 569
               DE         TC P+  +C N N CV   W CD DNDCGD SDE+   C  R C +
Sbjct: 3529 ---DER--------TCEPYQFRCKN-NRCVPGRWQCDYDNDCGDNSDEE--SCTPRPCSE 3574

Query: 570  NSF 572
            + F
Sbjct: 3575 SEF 3577

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

>sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2

 Score =  358 bits (918), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 235/608 (38%), Positives = 320/608 (52%), Gaps = 80/608 (13%)

Query: 3    GWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFA 62
            G D  +CK     +P+LIF+N+YY+R ++LD + Y+L+ Q L N VA+DF Y+E   Y+ 
Sbjct: 3015 GGDPHSCKAVTDEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWT 3074

Query: 63   DVAAK--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120
            DV  +   I R  +  +  + + R      +GLAVDWVG  LYW D+    ++V++L+G 
Sbjct: 3075 DVTTQGSMIRRMHLNGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGA 3134

Query: 121  NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179
             R  L  + +++PR + +    GY+Y++ W   + IG+IGMDGS+ + I+  +  I WPN
Sbjct: 3135 YRTVLVSSGLREPRALVVDVQNGYLYWTDWGDHSLIGRIGMDGSSRSVIV--DTKITWPN 3192

Query: 180  ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT 239
             LTLDY TER+YWADA  DYI    LDG ++H+V+S Q +PH+FALTLFED++YWTDW T
Sbjct: 3193 GLTLDYVTERIYWADAREDYIEFASLDGSNRHVVLS-QDIPHIFALTLFEDYVYWTDWET 3251

Query: 240  KSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK-------------GTTRHAWLTAHRG 286
            KSINRA K  G +  +L +T HRP D+HV+H L+             G   +  L +  G
Sbjct: 3252 KSINRAHKTTGTNKTLLISTLHRPMDLHVFHALRQPDVPNHPCKVNNGGCSNLCLLSPGG 3311

Query: 287  STTVADMIRSVYLGS-GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 345
                A    + YLGS G    S C++SQF C N KCI +   C+ E DC D SDEP  C 
Sbjct: 3312 GHKCA-CPTNFYLGSDGRTCVSNCTASQFVCKNDKCIPFWWKCDTEDDCGDHSDEPPDCP 3370

Query: 346  VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQ----Y 401
              +C   +  QC    + T   + C+ +   +   D   C DI  C+     C+      
Sbjct: 3371 EFKCRPGQF-QCSTG-ICTNPAFICDGDNDCQDNSDEANC-DIHVCLPSQFKCTNTNRCI 3427

Query: 402  PAMCH------------NRPCDKDT----EFACR-NGHCIPKLWVCDFDNDCGDDSDEPA 444
            P +               R C + T    +F C     CIP++WVCD DNDC D SDEPA
Sbjct: 3428 PGIFRCNGQDNCGDGEDERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPA 3487

Query: 445  YMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVN 504
              C Q  C     RC  K + RCIP    CDG+DDC DGSDE  + C             
Sbjct: 3488 N-CTQMTCGVDEFRC--KDSGRCIPARWKCDGEDDCGDGSDEPKEEC------------- 3531

Query: 505  DCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ 564
                    DE         TC P+  +C N N CV   W CD DNDCGD SDE+   C  
Sbjct: 3532 --------DER--------TCEPYQFRCKN-NRCVPGRWQCDYDNDCGDNSDEE--SCTP 3572

Query: 565  RTCPQNSF 572
            R C ++ F
Sbjct: 3573 RPCSESEF 3580

Functions as a receptor for Pseudomonas aeruginosa exotoxin A.

Homo sapiens (taxid: 9606)

>sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1

 Score =  356 bits (914), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 231/607 (38%), Positives = 314/607 (51%), Gaps = 78/607 (12%)

Query: 3    GWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFA 62
            G D  +CK     +P+LIF+N+YY+R ++LD + Y+L+ Q L N VA+DF Y+E   Y+ 
Sbjct: 3016 GGDPHSCKAVTDEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWT 3075

Query: 63   DVAAK--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120
            DV  +   I R  +  +  + + R      +GLAVDWVG  LYW D+    ++V++L+G 
Sbjct: 3076 DVTTQGSMIRRMHLNGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGA 3135

Query: 121  NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179
             R  L  + +++PR + +    GY+Y++ W   + IG+IGMDGS   R +  +  I WPN
Sbjct: 3136 YRTVLVSSGLREPRALVVDVQNGYLYWTDWGDHSLIGRIGMDGSG--RSIIVDTKITWPN 3193

Query: 180  ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT 239
             LT+DY TER+YWADA  DYI    LDG ++H+V+S Q +PH+FALTLFED++YWTDW T
Sbjct: 3194 GLTVDYVTERIYWADAREDYIEFASLDGSNRHVVLS-QDIPHIFALTLFEDYVYWTDWET 3252

Query: 240  KSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK-------------GTTRHAWLTAHRG 286
            KSINRA K  G +  +L +T HRP D+HV+H L+             G   +  L +  G
Sbjct: 3253 KSINRAHKTTGANKTLLISTLHRPMDLHVFHALRQPDVPNHPCKVNNGGCSNLCLLSPGG 3312

Query: 287  STTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNV 346
                A        G G    S C++SQF C N KCI +   C+ E DC D SDEP  C  
Sbjct: 3313 GHKCACPTNFYLGGDGRTCVSNCTASQFVCKNDKCIPFWWKCDTEDDCGDHSDEPPDCPE 3372

Query: 347  DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQ----YP 402
             +C   +  QC    + T   + C+ +   +   D   C DI  C+     C+      P
Sbjct: 3373 FKCRPGQF-QCSTG-ICTNPAFICDGDNDCQDNSDEANC-DIHVCLPSQFKCTNTNRCIP 3429

Query: 403  AMCH------------NRPCDKDT----EFACR-NGHCIPKLWVCDFDNDCGDDSDEPAY 445
             +               R C + T    +F C     CIP++WVCD DNDC D SDEPA 
Sbjct: 3430 GIFRCNGQDNCGDGEDERDCPEVTCAPNQFQCSITKRCIPRVWVCDRDNDCVDGSDEPAN 3489

Query: 446  MCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVND 505
             C Q  C     RC  K + RCIP    CDG+DDC DGSDE  + C              
Sbjct: 3490 -CTQMTCGVDEFRC--KDSGRCIPARWKCDGEDDCGDGSDEPKEEC-------------- 3532

Query: 506  CKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR 565
                   DE         TC P+  +C N N CV   W CD DNDCGD SDE+   C  R
Sbjct: 3533 -------DER--------TCEPYQFRCKN-NRCVPGRWQCDYDNDCGDNSDEE--SCTPR 3574

Query: 566  TCPQNSF 572
             C ++ F
Sbjct: 3575 PCSESEF 3581

Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A.

Mus musculus (taxid: 10090)

>sp|Q04833|LRP_CAEEL Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans GN=lrp-1 PE=1 SV=1

 Score =  320 bits (819), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 216/621 (34%), Positives = 301/621 (48%), Gaps = 89/621 (14%)

Query: 5    DESTCKRRD-SIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFAD 63
            D+ +CKR +   +P+ + +NK+Y+R +S+D  +Y L  Q   NVV++D    E + Y  D
Sbjct: 3301 DDHSCKRTEMEPEPFFLLANKHYIRKISIDGNKYELAAQGFDNVVSLDIDLTEKKAYLID 3360

Query: 64   VAAKTIYRSRVGSTEK-----ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD 118
                 + R  +   +      E V+RH+ +G EG+AVDWVGRKLY L+R  + + V ELD
Sbjct: 3361 QGKLRLLRVDLDEMDSPLSSYETVLRHNVYGTEGIAVDWVGRKLYMLNRQERSIRVCELD 3420

Query: 119  GTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR---ILTHEDD 174
            G   KTL +  IQ P+ I +HPG GY++F+ W+LQ YIG+I +DGS   +       E D
Sbjct: 3421 GRFCKTLIRDRIQQPKAIVVHPGKGYLFFTEWSLQPYIGRIALDGSPELQDPIFKLAEHD 3480

Query: 175  IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYW 234
            + WPNA+ +DYF++RL+W DAHL+ I  +D DG  +   I  Q+  HV ++ +F+D++YW
Sbjct: 3481 LGWPNAIAIDYFSDRLFWGDAHLNEIGFMDFDGNGRR-HIPAQRTSHVSSMVVFDDYLYW 3539

Query: 235  TDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWLT 282
             DWN + + R DK+ G++  +L+ T   P D+ + HP++            G   H  L 
Sbjct: 3540 ADWNLREVLRCDKWTGKNETILKKTVQLPNDLRIVHPMRQPAYPNPCGDNNGGCSHLCLI 3599

Query: 283  AHRGSTTVADMIRSVYLGSGNKE-NSTCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSD 339
               G+           L S  K     C+  QF C  ++ KCI     C+ E DC D SD
Sbjct: 3600 GAGGNGYTCSCPDQFVLLSDQKTCEPNCTERQFACGGDDAKCIPKLWYCDGEPDCRDGSD 3659

Query: 340  EPLH--CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGK-----------ACT 386
            EP    C    C   E     H C  T     C+ N       D +            C 
Sbjct: 3660 EPGESICGQRICPVGEFQCTNHNC--TRPFQICDGNDDCGDSSDEQNCDKACDPWMFKCA 3717

Query: 387  DIDECIEQPGVCSQYPA------------MCHNRPCDKDTEFACRNGHCIPKLWVCDFDN 434
                CI +   C                 M   R C  + EF C N  CI K W CD D+
Sbjct: 3718 ATGRCIPRRFTCDGDDDCGDRSDEADTLCMSAERNCTAE-EFRCNNNKCIAKAWRCDNDD 3776

Query: 435  DCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLE 494
            DCGD SDE    C Q  C KGW RC   ++YRCIP W FC+G+DDCRD SDE  Q CP  
Sbjct: 3777 DCGDGSDETPE-CAQIECKKGWTRC--SSSYRCIPNWAFCNGQDDCRDNSDEDKQRCP-- 3831

Query: 495  SLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDM 554
                 C+ V +                         +CA +  C+   W+CD +NDCGD 
Sbjct: 3832 ----TCDDVGE------------------------FRCATSGKCIPRRWMCDTENDCGDN 3863

Query: 555  SDEDPLHC--QQRTCPQNSFR 573
            SDE    C    R C ++ FR
Sbjct: 3864 SDELDASCGGTTRPCSESEFR 3884

May act as a receptor for the endocytosis of extracellular ligands such as chylomicron remnants, protease-inhibitor complexes and vitellogenin.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2

 Score =  267 bits (682), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 206/621 (33%), Positives = 292/621 (47%), Gaps = 85/621 (13%)

Query: 9    CKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKT 68
            CK     +P+LI ++ + +R +S D + Y+L+ Q L NV+A+DF Y+E   Y+ D +   
Sbjct: 3007 CKSLSDEEPFLILADHHEIRKISTDGSNYTLLKQGLNNVIAIDFDYREEFIYWIDSSRPN 3066

Query: 69   IYR-SRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT 127
              R +R+     +  + H++     LAVDW+G+ LYW D   + ++V++L+G     L +
Sbjct: 3067 GSRINRMCLNGSDIKVVHNTAVPNALAVDWIGKNLYWSDTEKRIIEVSKLNGLYPTILVS 3126

Query: 128  A-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
              ++ PR ++L P  GY+Y+       +IG++GMDG+N + ++  E  I+ P ALT+DY 
Sbjct: 3127 KRLKFPRDLSLDPQAGYLYWIDCCEYPHIGRVGMDGTNQSVVI--ETKISRPMALTIDYV 3184

Query: 187  TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
              RLYWAD   ++I   ++DG H+H V   Q +P V ALTLFED+IYWTD  TKS++RA 
Sbjct: 3185 NRRLYWADE--NHIEFSNMDGSHRHKV-PNQDIPGVIALTLFEDYIYWTDGKTKSLSRAH 3241

Query: 247  KFNGRDYRVLRNTTHRPYDIHVYHPLK-------------GTTRHAWLTAHRGSTTVADM 293
            K +G D   L  + H   DI VYH  +             G   H  L A  G T     
Sbjct: 3242 KTSGADRLSLIYSWHAITDIQVYHSYRQPDVSKHLCMINNGGCSHLCLLA-PGKTHTCAC 3300

Query: 294  IRSVYLGSGNKE-NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEP----------- 341
              + YL + N+   S C++SQFRC   KCI +   C+   DC D SDEP           
Sbjct: 3301 PTNFYLAADNRTCLSNCTASQFRCKTDKCIPFWWKCDTVDDCGDGSDEPDDCPEFRCQPG 3360

Query: 342  -LHCNVDECAKVE-----TNQCG----------HKCVDTLTGYYCECNTGYKLLEDGKAC 385
               C    CA         N CG          H C   L+G + +C    K +     C
Sbjct: 3361 RFQCGTGLCALPAFICDGENDCGDNSDELNCDTHVC---LSGQF-KCTKNQKCIPVNLRC 3416

Query: 386  TDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACR-NGHCIPKLWVCDFDNDCGDDSDEPA 444
               D+C ++     +    C    C  D  F C+   HCI KLWVCD D DC D SDE  
Sbjct: 3417 NGQDDCGDE-----EDERDCPENSCSPDY-FQCKTTKHCISKLWVCDEDPDCADASDEAN 3470

Query: 445  YMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE---LPQNCPLESLGSV-- 499
              C ++ C     +C    N  CIP    CD ++DC D SDE    PQ C L+       
Sbjct: 3471 --CDKKTCGPHEFQC---KNNNCIPDHWRCDSQNDCSDNSDEENCKPQTCTLKDFLCANG 3525

Query: 500  --------CNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDC 551
                    C+G  DC D   SDE +       +C     +C+N   C+   W CDG  DC
Sbjct: 3526 DCVSSRFWCDGDFDCADG--SDERNCE----TSCSKDQFRCSNGQ-CIPAKWKCDGHEDC 3578

Query: 552  GDMSDEDPLHCQQRTCPQNSF 572
                DE        TC    +
Sbjct: 3579 KYGEDEKSCEPASPTCSSREY 3599

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Homo sapiens (taxid: 9606)

>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1

 Score =  261 bits (668), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 202/600 (33%), Positives = 289/600 (48%), Gaps = 73/600 (12%)

Query: 9    CKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKT 68
            C+     +P+LI ++++ +R +S D + Y+L+ Q L NV+A+DF Y+E   Y+ D +   
Sbjct: 3007 CRSLSDEEPFLILADQHEIRKISTDGSNYTLLKQGLNNVIALDFDYREEFIYWIDSSRPN 3066

Query: 69   IYR-SRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT 127
              R +R+     +  + H++     LAVDW+G+ LYW D   + ++V++L+G     L +
Sbjct: 3067 GSRINRMCLNGSDIKVVHNTAVPNALAVDWIGKNLYWSDTEKRIIEVSKLNGLYPTVLVS 3126

Query: 128  A-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
              ++ PR ++L P  G +Y+       +IG++GMDG+N + ++  E  I+ P ALT+DY 
Sbjct: 3127 KRLKFPRDLSLDPRAGNLYWIDCCEYPHIGRVGMDGTNQSVVI--ETKISRPMALTIDYV 3184

Query: 187  TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
              RLYWAD   ++I   ++DG H+H V   Q +P V ALTLFED+IYWTD  TKS++R  
Sbjct: 3185 NHRLYWADE--NHIEFSNMDGSHRHKV-PNQDIPGVIALTLFEDYIYWTDGKTKSLSRVH 3241

Query: 247  KFNGRDYRVLRNTTHRPYDIHVYHPLK-------------GTTRHAWLTAHRGSTTVADM 293
            K +G D   L N+ H   DI VYH  +             G   H  L    G T     
Sbjct: 3242 KTSGADRLSLINSWHAITDIQVYHSYRQPDVSKHLCTVNNGGCSHLCLLG-PGKTHTCAC 3300

Query: 294  IRSVYLGSGNKE-NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKV 352
              + YL + N+   S C++SQFRC   KCI +   C+   DC D SDEP  C   +C   
Sbjct: 3301 PTNFYLAADNRTCLSNCTASQFRCKTDKCIPFWWKCDTVDDCGDGSDEPDDCPEFKCQPG 3360

Query: 353  ETNQCGHKCVDTLTGYYCE-------------CNTGYKLLEDGKACTDIDECIEQPGVCS 399
               QCG   +  L  + C+             C+T   L    K CT   +CI     C+
Sbjct: 3361 RF-QCGTG-LCALPAFICDGENDCGDNSDELNCDTHVCLAGQFK-CTKNKKCIPVNLRCN 3417

Query: 400  --------QYPAMCHNRPCDKDTEFACR-NGHCIPKLWVCDFDNDCGDDSDEPAYMCRQR 450
                    +    C    C  D  F C+   HCI KLWVCD D DC D SDE    C ++
Sbjct: 3418 GQDDCGDEEDEKDCPENSCSPDY-FQCKTTKHCISKLWVCDEDPDCADASDEAN--CDKK 3474

Query: 451  NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE---LPQNCPLESLGSV-------- 499
             C     +C    N  CIP    CD ++DC D SDE    PQ C L+             
Sbjct: 3475 TCGPHEFQC---KNNNCIPDHWRCDNQNDCSDNSDEDNCKPQTCTLKDFLCSNGDCVSSR 3531

Query: 500  --CNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
              C+G  DC D   SDE +       +C     +C+N   C+   W CDG  DC    DE
Sbjct: 3532 FWCDGEFDCADG--SDEKNCE----TSCSKDQFQCSNGQ-CLSAKWKCDGHEDCKYGEDE 3584

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Mus musculus (taxid: 10090)

>sp|Q95209|SORL_RABIT Sortilin-related receptor OS=Oryctolagus cuniculus GN=SORL1 PE=2 SV=1

 Score =  239 bits (610), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 183/614 (29%), Positives = 286/614 (46%), Gaps = 91/614 (14%)

Query: 18   WLIFSNKYYVRNMSL-DATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV-G 75
            +++++ +  +    L   T   L    L   VA+DF Y+ N  Y++D+A   I R  + G
Sbjct: 759  FILYATRKSIHRYDLASGTTEQLPLTGLRAAVALDFDYEHNCLYWSDLALDVIQRLCLNG 818

Query: 76   STEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL--KTAIQDPR 133
            ST +E +I  D   +E LA + + + LYW+D   K+++VA  DG  R T+   + +  PR
Sbjct: 819  STGQEVIINSDLETVEALAFEPLSQLLYWVDAGFKKIEVANPDGDFRLTVVNSSVLDRPR 878

Query: 134  GITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
             + L P  G ++++ W +L+  I +  MDGS   R+++  +D+ WPN +++D   + +YW
Sbjct: 879  ALVLVPQEGIMFWTDWGDLKPGIYRSNMDGSAAYRLVS--EDVKWPNGISVD--DQWIYW 934

Query: 193  ADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252
             DA+LD I  +   G+ + +++   ++PH +A+ +F++ IYW DW+  SI RA K++G  
Sbjct: 935  TDAYLDCIERITFSGQQRSVIL--DRLPHPYAIAVFKNEIYWDDWSQLSIFRASKYSGSQ 992

Query: 253  YRVLRNTTHRPYDIHVYHPLKGTTRHA-------WLTAHRGSTTVA----DMIRSVYLGS 301
              +L +      D+ +++  K T  +A        L   R + + +    D + S  L S
Sbjct: 993  MEILASQLTGLMDMKIFYKGKNTGSNACVPRPCSLLCLPRANNSKSCRCPDGVASSVLPS 1052

Query: 302  GN-----------------KENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHC 344
            G+                 KE  TC  +Q+RC+NG CI+    C+ ++DC D SDE  +C
Sbjct: 1053 GDLMCDCPKGYELKNNTCVKEEDTCLRNQYRCSNGNCINSIWWCDFDNDCGDMSDEK-NC 1111

Query: 345  NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAM 404
                C      +C          Y C+         D + C ++ +C      CS    +
Sbjct: 1112 PTTICDLDTQFRCQESGTCIPLSYKCDLEDDCGDNSDERHC-EMHQCRSDEYNCSSGMCI 1170

Query: 405  CHNRPCDKD---------------------TEFACRNGHCIPKLWVCDFDNDCGDDSDEP 443
              +  CD D                     + F CRNGHCIP+ W CD D DC D SDE 
Sbjct: 1171 RSSWVCDGDNDCRDWSDEANCTAIYHTCEASNFQCRNGHCIPQRWACDGDADCQDGSDED 1230

Query: 444  AYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDEL---------------- 487
               C ++    G+ RCP  T   CIP    CDG  DC DGSDE                 
Sbjct: 1231 PANCEKK--CNGF-RCPNGT---CIPSTKHCDGLHDCSDGSDEQHCEPLCTRFMDFVCKN 1284

Query: 488  PQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNI----TCPPHHLKCANTNICVEPYW 543
             Q C   S+  VC+G+  C+D    D   A C  +      C     +C N  +C+   W
Sbjct: 1285 RQQCLFHSM--VCDGIIQCRDGSDEDPAFAGCSRDPEFHKVCDEFGFQCQN-GVCISLIW 1341

Query: 544  LCDGDNDCGDMSDE 557
             CDG +DCGD SDE
Sbjct: 1342 KCDGMDDCGDYSDE 1355

Likely to be a multifunctional endocytic receptor, that may be implicated in the uptake of lipoproteins and of proteases. Binds LDL, the major cholesterol-carrying lipoprotein of plasma, and transports it into cells by endocytosis. Binds the receptor-associated protein (RAP). Could play a role in cell-cell interaction.

Oryctolagus cuniculus (taxid: 9986)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	573
328709384	4640	PREDICTED: low-density lipoprotein recep	0.982	0.121	0.551	0.0
91094565	1731	PREDICTED: similar to low-density lipopr	0.982	0.325	0.533	1e-180
270016386	1751	hypothetical protein TcasGA2_TC004260 [T	0.982	0.321	0.533	1e-180
242019639	4568	low-density lipoprotein receptor, putati	0.980	0.123	0.534	1e-179
157124457	4525	low-density lipoprotein receptor (ldl) [	0.977	0.123	0.517	1e-179
350411403	4608	PREDICTED: low-density lipoprotein recep	0.979	0.121	0.522	1e-177
340729715	4608	PREDICTED: low-density lipoprotein recep	0.979	0.121	0.520	1e-176
307208125	4539	Low-density lipoprotein receptor-related	0.979	0.123	0.517	1e-176
347963623	4655	AGAP000331-PA [Anopheles gambiae str. PE	0.977	0.120	0.517	1e-176
332024241	4558	Low-density lipoprotein receptor-related	0.979	0.123	0.519	1e-176

>gi|328709384|ref|XP_001944217.2| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Acyrthosiphon pisum]

 Score =  664 bits (1714), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/636 (55%), Positives = 427/636 (67%), Gaps = 73/636 (11%)

Query: 5    DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
            DE TCKRRD  KPWLIF+NKYYVRNMSLDA++YSL HQDLLNVVA+DF Y E + YF DV
Sbjct: 3218 DERTCKRRDRNKPWLIFTNKYYVRNMSLDASEYSLNHQDLLNVVALDFDYSEEKLYFCDV 3277

Query: 65   AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
            +AKTIYR++VGSTE+E++IRHDSHGLEG+AVDWVGRKLYWLDRHSK L+VAEL+GTNR+T
Sbjct: 3278 SAKTIYRTKVGSTEREKIIRHDSHGLEGIAVDWVGRKLYWLDRHSKHLEVAELNGTNRRT 3337

Query: 125  LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD 184
            LK  IQDPR + +HPG GY+YF+SW+LQAYIGKIGMDGSNFT+ILTHE+DIAWPNALT+D
Sbjct: 3338 LKAGIQDPRALAVHPGTGYLYFTSWHLQAYIGKIGMDGSNFTQILTHENDIAWPNALTID 3397

Query: 185  YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244
            YFTER+YWADAHLDYIAS DL+G+HKHIV+SG++VPHVFALTLF+D ++WTDWN K+I +
Sbjct: 3398 YFTERIYWADAHLDYIASADLEGRHKHIVLSGERVPHVFALTLFDDELFWTDWNLKAIVK 3457

Query: 245  ADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTTRH-------------- 278
            ++KF G++YR+LRNTTHRPYD+HVYH L+            G   H              
Sbjct: 3458 SNKFTGQNYRILRNTTHRPYDLHVYHNLRQIPFSNPCGDDNGGCSHLCLLRPVPGVDPSP 3517

Query: 279  -AWLTAHRGSTTVADMIRSVYLGSGNKEN--STCSSSQFRC--NNGKCIDYHLVCNKESD 333
              +L A    +         YL   + +   S C+  Q  C  N+ KCI +   C+ E D
Sbjct: 3518 DGYLDAKSPVSFTCACPNQFYLDPRDNKTCISNCTVGQHECKENDQKCIPWFWKCDGERD 3577

Query: 334  CEDDSDE-PLHCNVDECAKVETNQCGHK--------------CVDTLTGYYCEC---NTG 375
            C D +DE    C    C +    QC ++              C D      CE    +  
Sbjct: 3578 CADGTDEIQSQCPTRSC-RGGAFQCANRNCTPSATICDGVDDCGDGSDEKNCELPCPSIE 3636

Query: 376  YKLLEDGKACTDIDECIEQPGV---CSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDF 432
            +K   +G+   D  +C  +P       + PAMCHNR CD  +EF+C+NG CIPKLWVCDF
Sbjct: 3637 FKCRSNGRCILDSWKCDGEPDCKDGSDEDPAMCHNRQCDPKSEFSCKNGRCIPKLWVCDF 3696

Query: 433  DNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
            DNDCGDDSDEPAYMCRQRNCT GW+RCPGKTNYRCIPKWLFCDGKDDCRDGSDELP+NCP
Sbjct: 3697 DNDCGDDSDEPAYMCRQRNCTTGWQRCPGKTNYRCIPKWLFCDGKDDCRDGSDELPENCP 3756

Query: 493  LESLGS--------------VCNGVNDCKDNITSDETHARCPSNI-TCPPHHLKCANTNI 537
                 +              +C+  NDC DN  SDE+   C      C     +C+N   
Sbjct: 3757 KCQAATDYQCKNNRCIPKRWLCDFENDCGDN--SDESEDLCKGLYRQCSESEFQCSNGK- 3813

Query: 538  CVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
            C+   W CD D+DCGD SDE  L+C    C   +F+
Sbjct: 3814 CIPGQWRCDHDDDCGDNSDE--LNCGGFQCKNGTFQ 3847

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094565|ref|XP_967627.1| PREDICTED: similar to low-density lipoprotein receptor (ldl), partial [Tribolium castaneum]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 338/633 (53%), Positives = 427/633 (67%), Gaps = 70/633 (11%)

Query: 5    DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
            DE TCKR+D+++PW+IF+NKYY+RNMS+DA  Y+LVHQDL+NVVA+D+   + + YF DV
Sbjct: 1011 DEHTCKRKDTVEPWIIFTNKYYIRNMSIDARVYNLVHQDLMNVVALDYDMMDQKMYFCDV 1070

Query: 65   AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
             AKTIYRS +GS EKE +IRHDSHGLEG+++DW+GRK+YWLDRHSK LDV+ELDGTNRKT
Sbjct: 1071 TAKTIYRSPIGSPEKEPIIRHDSHGLEGISIDWIGRKIYWLDRHSKNLDVSELDGTNRKT 1130

Query: 125  LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD 184
            LKT+I DPR + +HPGIGY+YF+SW+LQAYIGK+GMDGSNFT ILT EDDIAWPNALT+D
Sbjct: 1131 LKTSINDPRAVVVHPGIGYLYFTSWHLQAYIGKLGMDGSNFTTILTWEDDIAWPNALTID 1190

Query: 185  YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244
            +FT+RLYWADAHLDYIA  DLDGK++HIVISG  VPHVFAL+LF+D+IYWTDWN K+I+R
Sbjct: 1191 FFTDRLYWADAHLDYIAMSDLDGKNRHIVISGSSVPHVFALSLFDDYIYWTDWNLKAISR 1250

Query: 245  ADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWLTA--------- 283
            A+KF+G++ ++LRNTTH+PYDIHV HPL+            G   H  L A         
Sbjct: 1251 ANKFDGKNLQILRNTTHKPYDIHVLHPLRQLPYPNPCGTNNGGCSHLCLIAPPHISSYLN 1310

Query: 284  ----HRGSTTVA-DMIRSVYLGSGNKE-NSTCSSSQFRC--NNGKCIDYHLVCNKESDCE 335
                  G+TT         YLG   K   + C+S Q++C  ++ KCI +   C+ E DC+
Sbjct: 1311 IEYGEEGATTYKCACPNQFYLGKDGKTCIANCTSGQWQCKGHDEKCIPWFWQCDGERDCK 1370

Query: 336  DDSDEPLHCNVDECAKVETNQCGH-KCV--DTLTGYYCECNTG--------------YKL 378
            D SDEP  C   +C +  T QC +  C    T+     +C  G              +K 
Sbjct: 1371 DGSDEPSTCPPRQC-RAGTFQCKNGNCTPSSTICDGTDDCGDGSDEQQCDMPCPELEFKC 1429

Query: 379  LEDGKACTDIDECIEQPGV---CSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDND 435
              +G+   D  +C   P       + P++C+ R CD  T+F+C+NG CIPKLWVCDFDND
Sbjct: 1430 RSNGRCILDSWKCDGDPDCKDGSDEDPSICNKRECDPATQFSCKNGRCIPKLWVCDFDND 1489

Query: 436  CGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLES 495
            CGDDSDEPAYMCRQ+NCT GW+RCPG+ NYRCIPKWLFCDGKDDCRD SDELP+NCP  +
Sbjct: 1490 CGDDSDEPAYMCRQKNCTTGWQRCPGRNNYRCIPKWLFCDGKDDCRDKSDELPENCPQCN 1549

Query: 496  LGS--------------VCNGVNDCKDNITSDETHARCPSNI-TCPPHHLKCANTNICVE 540
              +               C+  +DC DN  SDE+   C      C     KCAN   C+ 
Sbjct: 1550 PATDFKCANNRCVPNQWKCDFSDDCGDN--SDESDDLCKGTYRECSESEFKCANGK-CIS 1606

Query: 541  PYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
              W CD ++DCGD SDE    C++  C   +F+
Sbjct: 1607 SRWRCDHEDDCGDNSDE--TSCREFQCKNGTFQ 1637

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270016386|gb|EFA12832.1| hypothetical protein TcasGA2_TC004260 [Tribolium castaneum]

 Score =  638 bits (1646), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 338/633 (53%), Positives = 427/633 (67%), Gaps = 70/633 (11%)

Query: 5    DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
            DE TCKR+D+++PW+IF+NKYY+RNMS+DA  Y+LVHQDL+NVVA+D+   + + YF DV
Sbjct: 1017 DEHTCKRKDTVEPWIIFTNKYYIRNMSIDARVYNLVHQDLMNVVALDYDMMDQKMYFCDV 1076

Query: 65   AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
             AKTIYRS +GS EKE +IRHDSHGLEG+++DW+GRK+YWLDRHSK LDV+ELDGTNRKT
Sbjct: 1077 TAKTIYRSPIGSPEKEPIIRHDSHGLEGISIDWIGRKIYWLDRHSKNLDVSELDGTNRKT 1136

Query: 125  LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD 184
            LKT+I DPR + +HPGIGY+YF+SW+LQAYIGK+GMDGSNFT ILT EDDIAWPNALT+D
Sbjct: 1137 LKTSINDPRAVVVHPGIGYLYFTSWHLQAYIGKLGMDGSNFTTILTWEDDIAWPNALTID 1196

Query: 185  YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244
            +FT+RLYWADAHLDYIA  DLDGK++HIVISG  VPHVFAL+LF+D+IYWTDWN K+I+R
Sbjct: 1197 FFTDRLYWADAHLDYIAMSDLDGKNRHIVISGSSVPHVFALSLFDDYIYWTDWNLKAISR 1256

Query: 245  ADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWLTA--------- 283
            A+KF+G++ ++LRNTTH+PYDIHV HPL+            G   H  L A         
Sbjct: 1257 ANKFDGKNLQILRNTTHKPYDIHVLHPLRQLPYPNPCGTNNGGCSHLCLIAPPHISSYLN 1316

Query: 284  ----HRGSTTVA-DMIRSVYLGSGNKE-NSTCSSSQFRC--NNGKCIDYHLVCNKESDCE 335
                  G+TT         YLG   K   + C+S Q++C  ++ KCI +   C+ E DC+
Sbjct: 1317 IEYGEEGATTYKCACPNQFYLGKDGKTCIANCTSGQWQCKGHDEKCIPWFWQCDGERDCK 1376

Query: 336  DDSDEPLHCNVDECAKVETNQCGH-KCV--DTLTGYYCECNTG--------------YKL 378
            D SDEP  C   +C +  T QC +  C    T+     +C  G              +K 
Sbjct: 1377 DGSDEPSTCPPRQC-RAGTFQCKNGNCTPSSTICDGTDDCGDGSDEQQCDMPCPELEFKC 1435

Query: 379  LEDGKACTDIDECIEQPGV---CSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDND 435
              +G+   D  +C   P       + P++C+ R CD  T+F+C+NG CIPKLWVCDFDND
Sbjct: 1436 RSNGRCILDSWKCDGDPDCKDGSDEDPSICNKRECDPATQFSCKNGRCIPKLWVCDFDND 1495

Query: 436  CGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLES 495
            CGDDSDEPAYMCRQ+NCT GW+RCPG+ NYRCIPKWLFCDGKDDCRD SDELP+NCP  +
Sbjct: 1496 CGDDSDEPAYMCRQKNCTTGWQRCPGRNNYRCIPKWLFCDGKDDCRDKSDELPENCPQCN 1555

Query: 496  LGS--------------VCNGVNDCKDNITSDETHARCPSNI-TCPPHHLKCANTNICVE 540
              +               C+  +DC DN  SDE+   C      C     KCAN   C+ 
Sbjct: 1556 PATDFKCANNRCVPNQWKCDFSDDCGDN--SDESDDLCKGTYRECSESEFKCANGK-CIS 1612

Query: 541  PYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
              W CD ++DCGD SDE    C++  C   +F+
Sbjct: 1613 SRWRCDHEDDCGDNSDE--TSCREFQCKNGTFQ 1643

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019639|ref|XP_002430267.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212515374|gb|EEB17529.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis]

 Score =  635 bits (1637), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 340/636 (53%), Positives = 418/636 (65%), Gaps = 74/636 (11%)

Query: 5    DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
            DE +CKR+D I+PWLIF+NKYYVRNMS DA+ YSLVH+DL+NVVA+D+  K+ + YF DV
Sbjct: 3142 DERSCKRKDRIQPWLIFTNKYYVRNMSTDASVYSLVHKDLINVVALDYDLKDKKLYFCDV 3201

Query: 65   AAKTIYRSRV-GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123
            +AKTI+RS + G   KE VIRHDSHGLEG+AVDWVGRKLYWLDRHSK L+V+EL+G NRK
Sbjct: 3202 SAKTIFRSDIDGIDVKEPVIRHDSHGLEGIAVDWVGRKLYWLDRHSKHLEVSELNGVNRK 3261

Query: 124  TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
            TLK+ I DPR I +HPG+GY+YF+SW+LQAYIGKIGMDGSNFTRILT  DDIAWPNALT+
Sbjct: 3262 TLKSGIADPRAIAVHPGVGYLYFTSWHLQAYIGKIGMDGSNFTRILTWNDDIAWPNALTI 3321

Query: 184  DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSIN 243
            DYFT+R+Y+ADAHLDYIA  DL+GKH+HIV+SGQKVPHVFAL+LF+D +YWTDWN K+I+
Sbjct: 3322 DYFTDRIYFADAHLDYIAYTDLEGKHRHIVLSGQKVPHVFALSLFDDDVYWTDWNMKAIS 3381

Query: 244  RADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWLTA-------- 283
            +A+KF G+D ++LRNTTHRPYD+H+YHPL+            G   H  L A        
Sbjct: 3382 KANKFTGKDMKILRNTTHRPYDLHIYHPLRQLPYPNPCNQNNGGCSHLCLLAPAANGKPR 3441

Query: 284  ----HRGSTTVADMI-----RSVYLGSGNKENSTCSSSQFRC--NNGKCIDYHLVCNKES 332
                + G+ T  +       +   L  G    + C++ Q  C  N+ KCI +   C+ E 
Sbjct: 3442 NPFGYGGTDTPVNYSCACPNQFYLLADGKTCMANCTAGQHHCGGNDQKCIPWFWKCDGEL 3501

Query: 333  DCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGK----ACTDI 388
            DC+D SDEP  C V  C         + C  T +   C+       + D K     C +I
Sbjct: 3502 DCKDGSDEPSTCPVRTCRNGMFQCANNNC--TASANICDGVNDCGDMSDEKNCDLPCPEI 3559

Query: 389  DECIEQPGVC-----------------SQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCD 431
            +   +  G C                  + P MCHNR CD +TEF+C+NG CIPKLW+CD
Sbjct: 3560 EFKCKSNGRCILNSWKCDGDPDCKDGSDEDPLMCHNRKCDPETEFSCKNGRCIPKLWMCD 3619

Query: 432  FDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
            FDNDCGDDSDEPA+ CRQRNCT GW+RCPG+TNYRCIPKWLFCDGKDDCRD SDE P+NC
Sbjct: 3620 FDNDCGDDSDEPAFKCRQRNCTNGWQRCPGRTNYRCIPKWLFCDGKDDCRDNSDEKPENC 3679

Query: 492  PL-----ESLGS--------VCNGVNDCKDNITSDETHARCPSNI-TCPPHHLKCANTNI 537
            P         G+        +C+  NDC DN  SDET A C      C     +C N   
Sbjct: 3680 PKCQDTDFRCGNNRCIPKRWLCDHENDCADN--SDETDALCKGVYRECSESEFRCGNGK- 3736

Query: 538  CVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
            C+   W CD D+DCGD SDE    C    C   SF+
Sbjct: 3737 CIPQRWRCDHDDDCGDNSDES--GCADFKCKNGSFQ 3770

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124457|ref|XP_001660469.1| low-density lipoprotein receptor (ldl) [Aedes aegypti] gi|108873980|gb|EAT38205.1| AAEL009869-PA [Aedes aegypti]

 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 333/643 (51%), Positives = 415/643 (64%), Gaps = 83/643 (12%)

Query: 5    DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
            DE TCKR+D+ KPWLIFSNKYYVRNMS+D  QY+L+HQDL+NVVA+DF  KE   YF DV
Sbjct: 3086 DEHTCKRKDATKPWLIFSNKYYVRNMSVDGHQYNLIHQDLMNVVAIDFDMKEEEMYFCDV 3145

Query: 65   AAKTIYRSRVGST------EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD 118
             AKTI++S+ GS       EK  VI+HDSHGLEG+A+DWVGRKLYWLDRHSK LDV+ELD
Sbjct: 3146 TAKTIFKSKFGSIQDDVKIEKVPVIKHDSHGLEGIAIDWVGRKLYWLDRHSKNLDVSELD 3205

Query: 119  GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP 178
            GT RKTLK+ + DPR I +HPGIGY+YF+SW+LQAYI K+GMDGSNFTRILT E DIAWP
Sbjct: 3206 GTKRKTLKSGVVDPRAIAVHPGIGYLYFTSWHLQAYIAKMGMDGSNFTRILTWEQDIAWP 3265

Query: 179  NALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWN 238
            NALT+DYFT+R+YWADAHLDYIA  DL+G+H+H+V+SG KVPHVFAL++F+D +YWTDWN
Sbjct: 3266 NALTIDYFTDRIYWADAHLDYIAFSDLEGRHRHVVLSGSKVPHVFALSIFDDMLYWTDWN 3325

Query: 239  TKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTT----VADMI 294
             K+I RA+KF G ++ ++RNTTHRPYD+H+ HPL+    +    A  G  T    +A  +
Sbjct: 3326 LKAIIRANKFTGENFTIIRNTTHRPYDVHISHPLRQLPYNNPCGATNGGCTHLCLLAPPL 3385

Query: 295  RSVYLG-SGNKEN-----------------------STCSSSQFRCNNG--KCIDYHLVC 328
             S YL   G  E                        + C++ Q RC     KCI +   C
Sbjct: 3386 ESTYLNVEGYIEEGAPSYKCACPNQFYLARDMKTCIANCTTGQHRCGGADEKCIPWFWKC 3445

Query: 329  NKESDCEDDSDEPLHCNVDECAKVETNQCGHK--------------CVDTLTGYYCE--- 371
            + E DC+D SDEP  C    C +  T QCG+               C D      C+   
Sbjct: 3446 DGEPDCKDKSDEPETCPARHC-RAGTFQCGNGNCTPSTTICDGTDDCGDGTDEQNCDLPC 3504

Query: 372  ------CNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIP 425
                  C +  + + D   C    +C +      + P +CH R CD DTEF+C+NG CIP
Sbjct: 3505 PVSDFKCRSSGRCILDSWKCDGDADCKDGS---DEDPEICHKRACDPDTEFSCKNGRCIP 3561

Query: 426  KLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSD 485
            KLW+CDFDNDCGDDSDEPAYMCRQRNCT GW RCPG++NYRCIPKWLFCDGKDDCRD SD
Sbjct: 3562 KLWMCDFDNDCGDDSDEPAYMCRQRNCTTGWSRCPGQSNYRCIPKWLFCDGKDDCRDNSD 3621

Query: 486  ELPQNCPLESLGS--------------VCNGVNDCKDNITSDETHARCPSNI-TCPPHHL 530
            ELP+NCP  +  +              +C+  +DC D   SDE+ A+C      C     
Sbjct: 3622 ELPENCPKCNTETDFKCNNNRCIPKQWMCDFADDCGDG--SDESDAQCKGKYRECSESEF 3679

Query: 531  KCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
            +C N   C+   W CD ++DCGD SDE   +C+   C   +F+
Sbjct: 3680 RCGNGK-CISSRWRCDHEDDCGDNSDE--FNCEGFQCKNGTFQ 3719

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350411403|ref|XP_003489337.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Bombus impatiens]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 331/634 (52%), Positives = 415/634 (65%), Gaps = 73/634 (11%)

Query: 5    DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
            DE TCKRRD+I PW+IF+NKYYVRNMS+DA+ YSL+HQDL+NVVA+D  Y E   YF DV
Sbjct: 3205 DEHTCKRRDNIIPWIIFTNKYYVRNMSIDASNYSLMHQDLINVVALDADYAEQMLYFCDV 3264

Query: 65   AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
             AKTI+R+ +   EKE +IRHDS GLEG+A+DWVG+KLYWLDRH+K LDVAEL+GTNRKT
Sbjct: 3265 TAKTIFRAPIAGGEKEAIIRHDSLGLEGIAIDWVGKKLYWLDRHAKHLDVAELNGTNRKT 3324

Query: 125  LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD 184
            L T I DPR I +HPG GY+YF+SW+LQAYIGK+GMDGSNFTRILT EDDIAWPNALT+D
Sbjct: 3325 LLTGIADPRAIVVHPGTGYLYFTSWHLQAYIGKMGMDGSNFTRILTWEDDIAWPNALTID 3384

Query: 185  YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244
            YFT+R+++ADAHLDYIA  DL+G ++  V+SG  VPHVFA+T+F+D I+WTDWN K+I+R
Sbjct: 3385 YFTDRIFYADAHLDYIAFADLEGHNRRKVLSGSAVPHVFAITVFDDFIFWTDWNLKAISR 3444

Query: 245  ADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIR---SVYLGS 301
            ADKF+G + RVLRNTTHRPYDIH YHPL+    +   + + G  +   +I    S YL  
Sbjct: 3445 ADKFSGANLRVLRNTTHRPYDIHAYHPLRQLPYNNPCSENNGGCSHLCLISPPASSYLLE 3504

Query: 302  G-------------------NKENST----CSSSQFRCN--NGKCIDYHLVCNKESDCED 336
            G                   NK+  T    C++ Q RC   + KCI ++ +C+ E DC+D
Sbjct: 3505 GYGQPGVTSYKCNCPNQFILNKDGKTCRANCTAGQHRCGPPDEKCIPWYWMCDGEKDCKD 3564

Query: 337  DSDEPLHC-------NVDECAKVE----------TNQCGHKCVDTLTGYYC-----ECNT 374
             SDEP  C       +V +CA              + CG K  +      C     +C +
Sbjct: 3565 GSDEPTSCVARVCRPSVFQCANGNCRPSVAVCDGADDCGDKSDEANCNLECGELEFKCKS 3624

Query: 375  GYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDN 434
              + + +   C    +C +      + PA+CHNRPCD  TEF C+NG CI K+W+CD DN
Sbjct: 3625 NGRCIHESWKCDGDADCKDGS---DEDPAICHNRPCDPSTEFTCKNGRCIQKVWMCDSDN 3681

Query: 435  DCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP-- 492
            DCGDDSDEPAYMCRQ+NCT GW+RCPG  NYRCIPKWLFCDGKDDCRDGSDELP+NCP  
Sbjct: 3682 DCGDDSDEPAYMCRQKNCTTGWQRCPGHANYRCIPKWLFCDGKDDCRDGSDELPENCPKC 3741

Query: 493  ------------LESLGSVCNGVNDCKDNITSDETHARCPSNI-TCPPHHLKCANTNICV 539
                              +C+  +DC D   SDE  A C      C     KC N   C+
Sbjct: 3742 DPEMDFKCTNNRCVPKQWLCDFADDCGDG--SDEAEAMCKDRYRECSESEFKCDNGK-CI 3798

Query: 540  EPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
               W CD ++DCGD SDE+   CQ+  C  ++F+
Sbjct: 3799 ASRWRCDSEDDCGDNSDEN--GCQEFVCKGDTFQ 3830

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729715|ref|XP_003403142.1| PREDICTED: low-density lipoprotein receptor-related protein 2-like [Bombus terrestris]

 Score =  626 bits (1614), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 330/634 (52%), Positives = 414/634 (65%), Gaps = 73/634 (11%)

Query: 5    DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
            DE TCKRRD+I PW++F+NKYYVRNMS+DA+ YSL+HQDL+NVVA+D  Y E   YF DV
Sbjct: 3205 DEHTCKRRDNIIPWIVFTNKYYVRNMSIDASNYSLMHQDLINVVALDADYAEQMLYFCDV 3264

Query: 65   AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
             AKTI+R+ +   EKE +IRHDS GLEG+A+DWVG+KLYWLDRH+K LDVAEL+GTNRKT
Sbjct: 3265 TAKTIFRAPIAGGEKEAIIRHDSLGLEGIAIDWVGKKLYWLDRHAKHLDVAELNGTNRKT 3324

Query: 125  LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD 184
            L T I DPR I +HPG GY+YF+SW+LQAYIGK+GMDGSNFTRILT EDDIAWPNALT+D
Sbjct: 3325 LLTGIADPRAIVVHPGTGYLYFTSWHLQAYIGKMGMDGSNFTRILTWEDDIAWPNALTID 3384

Query: 185  YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244
            YFT+R+++ADAHLDYIA  DL+G ++  V+SG  VPHVFA+T+F+D I+WTDWN K+I+R
Sbjct: 3385 YFTDRIFYADAHLDYIAFADLEGHNRRKVLSGSAVPHVFAITVFDDFIFWTDWNLKAISR 3444

Query: 245  ADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIR---SVYLGS 301
            ADKF+G + RVLRNTTHRPYDIH YHPL+    +     + G  +   +I    S YL  
Sbjct: 3445 ADKFSGANLRVLRNTTHRPYDIHAYHPLRQLPYNNPCIENNGGCSHLCLISPPASSYLLE 3504

Query: 302  G-------------------NKENST----CSSSQFRCN--NGKCIDYHLVCNKESDCED 336
            G                   NK+  T    C++ Q RC   + KCI ++ +C+ E DC+D
Sbjct: 3505 GYGQPGVTSYKCNCPNQFILNKDGKTCRANCTAGQHRCGPPDEKCIPWYWMCDGEKDCKD 3564

Query: 337  DSDEPLHC-------NVDECAKVE----------TNQCGHKCVDTLTGYYC-----ECNT 374
             SDEP  C       +V +CA              + CG K  +      C     +C +
Sbjct: 3565 GSDEPTSCVARVCRPSVFQCANGNCRPSVAVCDGADDCGDKSDEANCNLECGELEFKCKS 3624

Query: 375  GYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDN 434
              + + +   C    +C +      + PA+CHNRPCD  TEF C+NG CI K+W+CD DN
Sbjct: 3625 NGRCIHESWKCDGDADCKDGS---DEDPAICHNRPCDPSTEFTCKNGRCIQKVWMCDSDN 3681

Query: 435  DCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP-- 492
            DCGDDSDEPAYMCRQ+NCT GW+RCPG  NYRCIPKWLFCDGKDDCRDGSDELP+NCP  
Sbjct: 3682 DCGDDSDEPAYMCRQKNCTTGWQRCPGHANYRCIPKWLFCDGKDDCRDGSDELPENCPKC 3741

Query: 493  ------------LESLGSVCNGVNDCKDNITSDETHARCPSNI-TCPPHHLKCANTNICV 539
                              +C+  +DC D   SDE  A C      C     KC N   C+
Sbjct: 3742 DPEMDFKCTNNRCVPKQWLCDFADDCGDG--SDEAEAMCKDRYRECSESEFKCDNGK-CI 3798

Query: 540  EPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
               W CD ++DCGD SDE+   CQ+  C  ++F+
Sbjct: 3799 ASRWRCDSEDDCGDNSDEN--GCQEFVCKGDTFQ 3830

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208125|gb|EFN85629.1| Low-density lipoprotein receptor-related protein 2 [Harpegnathos saltator]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 328/634 (51%), Positives = 410/634 (64%), Gaps = 73/634 (11%)

Query: 5    DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
            DE TCKRRD+I+PW+IF+NKYYVRNMS+DA  YSL+HQDL+NVVA+D  Y E   YF DV
Sbjct: 3138 DEHTCKRRDNIQPWIIFTNKYYVRNMSIDARNYSLMHQDLINVVALDADYTEQMLYFCDV 3197

Query: 65   AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
             AKTIYR+ +   E+E +IRHDS GLEG+A+DWVGRKLYWLDRH+K LDV+ELDGTNRKT
Sbjct: 3198 TAKTIYRAPINGGEREAIIRHDSLGLEGIAIDWVGRKLYWLDRHAKHLDVSELDGTNRKT 3257

Query: 125  LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD 184
            L++ I DPR I +HPG GY++F+SW+LQAYIGK+GMDGSNFTRILT EDDIAWPNALT+D
Sbjct: 3258 LQSGIADPRAIAVHPGTGYLFFTSWHLQAYIGKMGMDGSNFTRILTWEDDIAWPNALTID 3317

Query: 185  YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244
            YFT+R++WADAHLDYIA  DL+G ++ IV+SG  VPHVFA+T+F+D IYWTDWN K+I+R
Sbjct: 3318 YFTDRIFWADAHLDYIAFADLEGHNRRIVLSGTSVPHVFAITVFDDFIYWTDWNLKAISR 3377

Query: 245  ADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWLTAHRGSTTVAD 292
            A+KF+G   ++LRNTTHRPYDIH YHPL+            G   H  L A   S+ + +
Sbjct: 3378 AEKFSGAKLKMLRNTTHRPYDIHAYHPLRQLPYNNPCAENNGGCSHLCLIAPPASSYLLE 3437

Query: 293  MIRSVYLGS--------------GNKENSTCSSSQFRCN--NGKCIDYHLVCNKESDCED 336
                  + S              G    + C++ Q RC   + KCI ++  C+ E DC+D
Sbjct: 3438 GYGQPGVTSYKCECPNQFSLDKDGKTCIANCTAGQHRCGPPDEKCIPWYWRCDGEKDCKD 3497

Query: 337  DSDEPLHC-------NVDECAKVE----------TNQCGHKCVDTLTGYYC-----ECNT 374
             SDE   C       +V +CA             ++ CG K  +      C     +C +
Sbjct: 3498 GSDESSSCPPRNCGPSVFQCANGNCTPTVTICDGSDDCGDKSDEAKCALECGELEFKCKS 3557

Query: 375  GYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDN 434
              + + D   C    +C +      + P +CHNR CD  TEF+C+NG CIPKLW+CD DN
Sbjct: 3558 NGRCIHDSWKCDGDADCKDGS---DEDPVICHNRTCDPSTEFSCKNGKCIPKLWMCDSDN 3614

Query: 435  DCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLE 494
            DCGDDSDEPAYMCRQRNCT GW+RCPG  NYRCIPKWLFCDGKDDCRDGSDE P+NCP  
Sbjct: 3615 DCGDDSDEPAYMCRQRNCTTGWQRCPGHANYRCIPKWLFCDGKDDCRDGSDERPENCPKC 3674

Query: 495  SLGS--------------VCNGVNDCKDNITSDETHARCPSNI-TCPPHHLKCANTNICV 539
                              +C+  +DC D   SDE  A C      C     KC N   C+
Sbjct: 3675 DPSMDFRCTNNRCVPKQWLCDFADDCGDG--SDEAEAMCKDKYRECSESEFKCKNGK-CI 3731

Query: 540  EPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
               W CD ++DCGD SDE+   C +  C  +SF+
Sbjct: 3732 ASRWRCDSEDDCGDGSDEE--ECHRWVCKNDSFQ 3763

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347963623|ref|XP_310784.4| AGAP000331-PA [Anopheles gambiae str. PEST] gi|333467112|gb|EAA06237.5| AGAP000331-PA [Anopheles gambiae str. PEST]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 333/644 (51%), Positives = 415/644 (64%), Gaps = 84/644 (13%)

Query: 5    DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
            DE TCKR+D  KPWLIFSNKYYVRNMS D  QY+L+HQDL+NVVA+DF  +++  YF DV
Sbjct: 3197 DEHTCKRKDDTKPWLIFSNKYYVRNMSTDGHQYNLIHQDLMNVVAIDFDMQQHEMYFCDV 3256

Query: 65   AAKTIYRSRVGS-------TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117
             AKTI++S  GS        EK  VI+HDSHGLEG+A+DWVGRKLYWLDRHSK LDVAEL
Sbjct: 3257 TAKTIFKSSFGSLVEDGVRIEKTPVIKHDSHGLEGIAIDWVGRKLYWLDRHSKNLDVAEL 3316

Query: 118  DGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAW 177
            DGT RKTL++ + DPR I +HPGIGY+YF+SW+LQAYI K+GMDGSNFTRILT EDDIAW
Sbjct: 3317 DGTRRKTLRSGVVDPRAIVVHPGIGYLYFTSWHLQAYIAKMGMDGSNFTRILTWEDDIAW 3376

Query: 178  PNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW 237
            PNALT+DYFT+R+YWADAHLDYIA  DL+G+H+H+V+SG +VPHVFAL++F+D +YWTDW
Sbjct: 3377 PNALTIDYFTDRIYWADAHLDYIAFADLEGRHRHVVLSGARVPHVFALSIFDDSLYWTDW 3436

Query: 238  NTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK--------GTTR----HAWLTAHR 285
            N K+I RA+KF G +Y V+RNTTHRPYD+H+ HPL+        GTT     H  L A  
Sbjct: 3437 NLKAILRANKFTGANYTVVRNTTHRPYDVHISHPLRQIPFPNPCGTTNGGCSHLCLLAPP 3496

Query: 286  GSTTVADM---------------IRSVYLGSGNKE-NSTCSSSQFRC--NNGKCIDYHLV 327
              +T  ++                   YL    K   + C+S Q RC  ++ KCI +   
Sbjct: 3497 LESTYLNVEGYLEEGAPSYRCACPNQFYLARDQKTCIANCTSGQHRCGGDDEKCIPWFWK 3556

Query: 328  CNKESDCEDDSDEPLHCNVDECAKVETNQCGHK--------------CVDTLTGYYCE-- 371
            C+ E DC+D SDEP  C    C +  T QCG+               C D      C+  
Sbjct: 3557 CDGEPDCKDRSDEPASCPARHC-RAGTFQCGNGNCTPSTTICDGTDDCGDGTDEQNCDLP 3615

Query: 372  -------CNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCI 424
                   C +  + + D   C    +C +      + P +CH R CD +TEF+C+NG CI
Sbjct: 3616 CPVSDFKCKSSGRCILDSWKCDGDADCKDGS---DEDPEICHKRTCDPETEFSCKNGRCI 3672

Query: 425  PKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGS 484
            PKLW+CDFDNDCGDDSDEPAYMCRQRNCT GW RCPG++NYRCIPKWLFCDGKDDCRD S
Sbjct: 3673 PKLWMCDFDNDCGDDSDEPAYMCRQRNCTTGWSRCPGQSNYRCIPKWLFCDGKDDCRDKS 3732

Query: 485  DELPQNCPLESLGS--------------VCNGVNDCKDNITSDETHARCPSNI-TCPPHH 529
            DELP+NCP  +  +              +C+  +DC D   SDE+  +C      C    
Sbjct: 3733 DELPENCPQCNQETDFKCNNNRCIPRQWMCDFADDCGDG--SDESETQCKGKYRECSESE 3790

Query: 530  LKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
             +C N   C+   W CD ++DCGD SDE    C+   C   +F+
Sbjct: 3791 FRCDNGK-CISSRWRCDHEDDCGDNSDE--YGCEGFQCKNGTFQ 3831

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024241|gb|EGI64445.1| Low-density lipoprotein receptor-related protein 2 [Acromyrmex echinatior]

 Score =  623 bits (1607), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 330/635 (51%), Positives = 414/635 (65%), Gaps = 74/635 (11%)

Query: 5    DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
            DE TCKRRD+++PW++F+NKYYVRNMS+DA+QYSL+HQDL+NVVA+D  Y +   YF DV
Sbjct: 3153 DEHTCKRRDNVQPWIVFTNKYYVRNMSIDASQYSLMHQDLINVVALDADYAQQMLYFCDV 3212

Query: 65   AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
             AKTIYR+ V   E+E +IRHDS GLEG+A+DWVGRKLYWLDRH+K LDVAELDGTNRKT
Sbjct: 3213 TAKTIYRAPVNGGEREPIIRHDSLGLEGIAIDWVGRKLYWLDRHAKHLDVAELDGTNRKT 3272

Query: 125  LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD 184
            L++ I DPR I +HPG GY+YF+SW+LQAYIGK+GMDGSNFTRILT EDDIAWPNALT+D
Sbjct: 3273 LQSGIADPRAIAVHPGAGYLYFTSWHLQAYIGKMGMDGSNFTRILTWEDDIAWPNALTID 3332

Query: 185  YFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244
            YFT+R++WADAHLDYIA  DL+G ++ IV+ G  VPHVFA+T+F+D IYWTDWN K+I+R
Sbjct: 3333 YFTDRIFWADAHLDYIAFADLEGHNRRIVLKGASVPHVFAITVFDDFIYWTDWNLKAISR 3392

Query: 245  ADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWLTAHRGSTTVAD 292
            A+KF+G   +VLRNTTHRPYDIH YHPL+            G   H  L A   S+ + +
Sbjct: 3393 AEKFSGAHLQVLRNTTHRPYDIHAYHPLRQLPYNNPCANNNGGCSHLCLIAPPASSYLLE 3452

Query: 293  MIRSVYLGS----------GNKENST----CSSSQFRCN--NGKCIDYHLVCNKESDCED 336
                  + S           +K++ T    C++ Q RC   + KCI ++  C+ E DC+D
Sbjct: 3453 GYGQPGVTSYKCKCPNQFILDKDDKTCIANCTAGQHRCGPPDEKCIPWYWRCDGEKDCKD 3512

Query: 337  DSDEP-------------LHCNVDECAKVET-----NQCGHKCVDTLTGYYC-----ECN 373
             +DE                C    C    T     + CG K  +      C     +C 
Sbjct: 3513 GTDESSFSCPPRICRPSFFQCANRNCTPSVTICDGIDDCGDKSDEAKCALECGELEFKCK 3572

Query: 374  TGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFD 433
            +  + + D   C    +C +      + P++CHNR CD  TEF+C+NG CIPKLW+CD D
Sbjct: 3573 SNGRCVHDSWKCDGDADCKDGS---DEDPSICHNRVCDPSTEFSCKNGKCIPKLWMCDSD 3629

Query: 434  NDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP- 492
            NDCGDDSDEPAYMCRQRNCT GW+RCPG  NYRCIPKWLFCDGKDDCRDGSDE P+NCP 
Sbjct: 3630 NDCGDDSDEPAYMCRQRNCTTGWQRCPGHANYRCIPKWLFCDGKDDCRDGSDERPENCPK 3689

Query: 493  ----LESLGS---------VCNGVNDCKDNITSDETHARCPSNI-TCPPHHLKCANTNIC 538
                L+   +         +C+  +DC D   SDE  A C      C     KC N   C
Sbjct: 3690 CDPTLDFKCTNNRCVPKQWLCDFADDCGDG--SDEADAMCKDKYRQCSESEFKCKNGK-C 3746

Query: 539  VEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
            +   W CD ++DCGD SDE+   C Q  C  ++FR
Sbjct: 3747 IASRWRCDNEDDCGDNSDEE--QCHQWVCKSDNFR 3779

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	573
FB|FBgn0261260	4769	mgl "Megalin" [Drosophila mela	0.923	0.110	0.442	1.9e-116
ZFIN|ZDB-GENE-050119-2	4673	lrp2a "low density lipoprotein	0.928	0.113	0.386	2.2e-101
UNIPROTKB|F1PIB4	4549	LRP2 "Uncharacterized protein"	0.945	0.119	0.377	9.1e-96
UNIPROTKB|F1N6H1	4626	LRP2 "Uncharacterized protein"	0.933	0.115	0.373	7.6e-94
UNIPROTKB|K7GS03	1602	LOC100514839 "Uncharacterized	0.928	0.332	0.367	1.4e-93
UNIPROTKB|P98157	4543	LRP1 "Low-density lipoprotein	0.923	0.116	0.372	1.5e-93
UNIPROTKB|Q07954	4544	LRP1 "Prolow-density lipoprote	0.930	0.117	0.368	6.7e-93
UNIPROTKB|E2R4Q1	4528	LRP1 "Uncharacterized protein"	0.930	0.117	0.368	1.4e-92
UNIPROTKB|J9P315	4544	LRP1 "Uncharacterized protein"	0.930	0.117	0.368	1.4e-92
UNIPROTKB|E1BGJ0	4544	LRP1 "Uncharacterized protein"	0.928	0.117	0.366	1.4e-92

FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)]

 Score = 1166 (415.5 bits), Expect = 1.9e-116, P = 1.9e-116
 Identities = 262/592 (44%), Positives = 338/592 (57%)

Query:     5 DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
             DE TCKR+D I PWLIF+NKYYVRNMS+D  QY+L+HQDL+NVVA+DF  +E   YF DV
Sbjct:  3325 DEHTCKRKDKIPPWLIFTNKYYVRNMSVDGHQYNLMHQDLMNVVALDFDIREEYMYFCDV 3384

Query:    65 AAKTIYRSRVGST------EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD 118
              AKTI+R++ G        E+E VIRHDSHGLEG+A+DWVGRKLYWLDRHSK LDV+ELD
Sbjct:  3385 TAKTIFRAKYGEADDEMPPEREAVIRHDSHGLEGIAIDWVGRKLYWLDRHSKNLDVSELD 3444

Query:   119 GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP 178
             G+ RKTL++ + DPR I +HPGIGY+YF+SW+LQAYI K+GMDGSNF+RIL   D IAWP
Sbjct:  3445 GSKRKTLRSGVVDPRAIVVHPGIGYLYFTSWHLQAYIAKMGMDGSNFSRILNWNDGIAWP 3504

Query:   179 NALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWN 238
             NAL++DYFT+R+YWADAHLDYIA  DL+G+H+H V+SG KVPHVFAL+LF+D+IYW+DWN
Sbjct:  3505 NALSIDYFTDRIYWADAHLDYIAYADLEGRHRHTVLSGSKVPHVFALSLFDDYIYWSDWN 3564

Query:   239 TKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTT----VADMI 294
              K+I RA+KF+G +Y VLRNTTHRPYD+H+ HPL+          + G  +    +A   
Sbjct:  3565 LKAIVRANKFHGANYTVLRNTTHRPYDLHINHPLRQLPYTNPCGTNNGGCSHLCLIAPPP 3624

Query:   295 RSVYLG-SGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLH-CNV-DECAK 351
              S YL   G  E     +  F+C    C +   +      C  +     H C   DE   
Sbjct:  3625 ESTYLNIEGYIEEG---APIFKC---ACPNQFYLARDMKTCVANCTAGQHLCGGRDEKCI 3678

Query:   352 VETNQC-GHK-CVD------TLTGYYCECNT----GYKLLEDGKACTDIDECIEQPGVCS 399
                 +C G K C D      T    +C   T              C  +D+C ++    +
Sbjct:  3679 PWFWKCDGEKDCKDGSDEPATCAPRHCRAGTFQCKNTNCTPSATICDGVDDCGDRSDEQN 3738

Query:   400 QYPAMCHNRPCDKDTEFACRN-GHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWE- 457
                  C + PC   ++F C++ G CI   W C           E   +C +R C    E 
Sbjct:  3739 -----C-DLPCPL-SDFKCKSSGRCILDSWRCDGDADCKDGSDEDPAVCFKRTCDPKTEF 3791

Query:   458 RCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHA 517
              C    N RCIP+   CD  +DC D SDE     P      +C      + N T+     
Sbjct:  3792 SCK---NGRCIPQLWMCDFDNDCGDDSDE-----P----AYMCR-----QRNCTTG--WQ 3832

Query:   518 RCP--SNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTC 567
             RCP  SN  C P  L C   + C +     +   +C   + E    C    C
Sbjct:  3833 RCPGQSNYRCIPKWLFCDGKDDCRDNS--DELPENCPKCNPETDFKCGNNRC 3882

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IMP

ZFIN|ZDB-GENE-050119-2 lrp2a "low density lipoprotein receptor-related protein 2a" [Danio rerio (taxid:7955)]

 Score = 1024 (365.5 bits), Expect = 2.2e-101, P = 2.2e-101
 Identities = 238/615 (38%), Positives = 326/615 (53%)

Query:     5 DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
             D  +C++  +I P+LIFSN+YY+RN+S D   YSL+ Q L +VVA+DF   + R Y+ DV
Sbjct:  3205 DGHSCRQNSNIHPYLIFSNRYYLRNLSTDGEAYSLILQGLSSVVALDFDRVDKRLYWIDV 3264

Query:    65 AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RK 123
             + + + R     T +E V+    HG EGLAVDW+GRKLYW+D     L V+ELDG   RK
Sbjct:  3265 SRRVLERMFFNGTGREAVVNGVLHG-EGLAVDWIGRKLYWVDSFLDCLKVSELDGRFVRK 3323

Query:   124 TLKTAIQD--------PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDI 175
               +  + D        PR + LHP  GYVY++ W  +A+IG++GMDG+N + I+T +  I
Sbjct:  3324 LAEHCVDDNHTYCFQNPRAVVLHPKFGYVYWTDWGERAFIGRVGMDGNNKSAIITTK--I 3381

Query:   176 AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWT 235
              WPN LT+DY  ++LYW+DAHL+YI   DLDG+H+H V  G  +PH FA+T+FED +YWT
Sbjct:  3382 EWPNGLTIDYTNDKLYWSDAHLNYIEFSDLDGRHRHTVYDGV-LPHPFAITVFEDTLYWT 3440

Query:   236 DWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWL-- 281
             DWNT+++ + +K+NG    +L NTTHRP+DIHV HP +            G   H  L  
Sbjct:  3441 DWNTRTVEKGNKYNGSGREMLVNTTHRPFDIHVCHPYRQPIVTNPCALNNGGCSHLCLLR 3500

Query:   282 TAHRGSTTVA-DMIRSVYLGSGNKENSTCSSSQFRC-NNGKCIDYHLVCNKESDCEDDSD 339
                +G T    D   +V +    +    CSS+Q+RC +N +CI     C+ + DC D SD
Sbjct:  3501 AGGQGYTCECPDHFLTVQIAGVARCLPMCSSTQYRCADNERCIPIWWKCDGQRDCRDGSD 3560

Query:   340 EPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCS 399
             EP  C V  C ++   QC         G    C + + L      C    +C   P    
Sbjct:  3561 EPSTCPVRHC-RLGQFQCND-------G---NCTSPHFL------CNSNQDC---PDGSD 3600

Query:   400 QYPAMCHNRPCDKDTEFACRNGHCIPKLWVCXXXXXXXXXXXE-PAYMCRQRNCTKGWER 458
             +   +C    C+   ++ C N  CI + W C           E PA+ C  R C  G  +
Sbjct:  3601 EDTVLCATHQCESH-QWQCANKRCISEAWQCDGENDCGDGSDEDPAH-CSSRTCRPGQFK 3658

Query:   459 CPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC--PLES-----------------LGSV 499
             C    N RCIP    CD  DDC D SDE  + C  P                    L +V
Sbjct:  3659 C---RNGRCIPNTWKCDVDDDCGDNSDEPIEECMGPAYRCDNHTEFDCRTNYRCVPLWAV 3715

Query:   500 CNGVNDCKDNITSDETHARCPSNITCPPH-HLKCANTNICVEPYWLCDGDNDCGDMSDED 558
             CNG NDC+DN  SDE +  C   +TC P    +C N   C+   W CDGDNDCGD SDE 
Sbjct:  3716 CNGHNDCRDN--SDEQN--C-EELTCEPSGDFRCDNHQ-CIPLRWRCDGDNDCGDGSDEH 3769

Query:   559 PLHCQQRTCPQNSFR 573
               +C  R C ++ +R
Sbjct:  3770 --NCSPRPCTESEYR 3782

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0070293 "renal absorption" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PIB4 LRP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 971 (346.9 bits), Expect = 9.1e-96, P = 9.1e-96
 Identities = 228/604 (37%), Positives = 315/604 (52%)

Query:     5 DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
             D  +C++  +I+P+LIFSN+YY+RN++ D   YSL+ Q L N VA+DF   E R Y+ D 
Sbjct:  3160 DGKSCRQNSNIEPYLIFSNRYYLRNLTTDGHYYSLILQGLGNAVALDFDRVEKRLYWIDA 3219

Query:    65 AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
               K I R  +  T +E VI H     E LAVDWV RKLYWLD +   L V++LDG  R+ 
Sbjct:  3220 ENKVIERMFLNKTNRETVINHKLPAAESLAVDWVARKLYWLDAYLHCLSVSDLDGRYRRK 3279

Query:   125 LKTAIQD---------PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDI 175
             L     D         PRGI LHP  GYVY++ W  QAYIG+IGMDG+N + I++ +  I
Sbjct:  3280 LAEHCVDVNNTFCFDHPRGIALHPRYGYVYWADWAYQAYIGRIGMDGTNKSVIISTK--I 3337

Query:   176 AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWT 235
              WPN +T+DY  + LYWADAHL YI   DL+G+H+H V   + +PH FA+T+FED IYWT
Sbjct:  3338 EWPNGITIDYTNDLLYWADAHLGYIEYSDLEGRHRHTVYD-RTLPHPFAITIFEDTIYWT 3396

Query:   236 DWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIR 295
             DWNT+++ + +K++G D  +L NTTH+P+DIHVYHP +    +     + G  +   +I+
Sbjct:  3397 DWNTRTVEKGNKYDGSDRIILVNTTHKPFDIHVYHPYRQPFVNNPCGTNNGGCSHLCLIK 3456

Query:   296 SVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETN 355
             +     GN     C         G   D + +C     C   S + L  N ++C  +   
Sbjct:  3457 A----GGNGFTCECPDDFHTLRMG---DMN-ICLPR--CS--STQFLCANSEKCIPIWWK 3504

Query:   356 QCGHK-CVD-TLTGYYCE---CNTGYKLLEDGKACTDIDEC-IEQ--PGVCSQYPAMCHN 407
               G + C D +     C    C  G    +DG   +    C   Q  P    +   +C +
Sbjct:  3505 CDGQRDCSDGSDEPVLCPQRYCRLGQFQCKDGNCTSSHFLCNAHQDCPDGSDEDQILCEH 3564

Query:   408 RPCDKDTEFACRNGHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRC 467
               C+ + E+ C N  CIP+ W C           E  Y C  R C  G+ +C    N  C
Sbjct:  3565 HRCESN-EWQCANKRCIPEAWRCDSENDCGDNSDEDVYNCASRICQPGYFKC---ANNHC 3620

Query:   468 IPKWLFCDGKDDCRDGSDE-LPQ----NCPLES------------LGSVCNGVNDCKDNI 510
             IP+   CD  +DC D SDE +P+     C   +              SVCNG +DC+DN 
Sbjct:  3621 IPQDWKCDVDNDCGDYSDEPMPECMSHRCDNHTEFSCRTNYRCIPQWSVCNGFDDCRDN- 3679

Query:   511 TSDETHARCPSNITCPPH-HLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQ 569
              SDE    C    TC P    +C N + C+   W CDG NDCGD SDE+  +C  R C +
Sbjct:  3680 -SDEQG--CEER-TCKPSGEFRC-NNHRCIPLRWRCDGHNDCGDHSDEE--NCVPRECSE 3732

Query:   570 NSFR 573
             + FR
Sbjct:  3733 SEFR 3736

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1N6H1 LRP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 953 (340.5 bits), Expect = 7.6e-94, P = 7.6e-94
 Identities = 230/615 (37%), Positives = 315/615 (51%)

Query:     5 DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
             D  TC++  +I+P LIFSN+YY+RN+++    YSL+ Q L NVVA+DF   E R Y+ D+
Sbjct:  3158 DGKTCRQNSNIEPDLIFSNRYYLRNLTVYGHLYSLILQGLGNVVALDFDRVEKRLYWLDI 3217

Query:    65 AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
               K I R  V +T +E V++++  G E LAVDWV RKLYW+D +   L V++L+G  R+ 
Sbjct:  3218 ENKVIERMFVNTTNRETVLKYNLPGAESLAVDWVTRKLYWVDSYLNCLSVSDLNGRYRRK 3277

Query:   125 LKT---------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDI 175
             L             ++PRG+ LHP  G+VY++ W  +AYIG++GMDG+  + I++ +  I
Sbjct:  3278 LAEHCVDANNTFCFENPRGLALHPRYGHVYWADWGDRAYIGRVGMDGTLKSLIISTK--I 3335

Query:   176 AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWT 235
              WPN LT+DY  + LYWADAHL YI   DL+G+H+H V     + H FA+T+FED IYWT
Sbjct:  3336 MWPNGLTIDYTNDLLYWADAHLGYIEFSDLEGRHRHTVYETGTLSHPFAITIFEDTIYWT 3395

Query:   236 DWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK---------GTTR----HAWLT 282
             DWNTK++ + +K+NG D   L N THRPYDI VYHP +         GT      H  L 
Sbjct:  3396 DWNTKTVEKGNKYNGSDRVALLNVTHRPYDIRVYHPYRQPIVVPNPCGTNNGGCSHLCLI 3455

Query:   283 AHRG---STTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSD 339
                G   +    D   +V  G   +    CSS+QF C      D  +       C+   D
Sbjct:  3456 KEGGVGFTCECPDNFYTVQRGPNTQCLPMCSSTQFLC-----ADSEMCIPIWWKCDGRRD 3510

Query:   340 EPLHCNVDECAKVETNQCGHK-CVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVC 398
                 C +D     E   C  + C     G + +CN G         C    +C   P   
Sbjct:  3511 ----C-LD--GSDEPITCPQRFCA---LGMF-QCNDG-NCTNSHSLCNLRQDC---PDGS 3555

Query:   399 SQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWER 458
              + P +C +  C+   E+ C N  CIP+ W C           E +  C  R C  G+ +
Sbjct:  3556 DEDPVLCEHHQCEP-YEWQCANKRCIPESWQCDMQDDCDDNSDEDSSHCASRTCRPGYFK 3614

Query:   459 CPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLG-------------------SV 499
             C    N  CIP+   CD  +DC D SDE  Q C   S                     +V
Sbjct:  3615 C---ANGHCIPQIWKCDVDNDCGDYSDEPLQECLGPSYRCDNYTEFSCKTNYRCIPKWAV 3671

Query:   500 CNGVNDCKDNITSDETHARCPSNITCPPH-HLKCANTNICVEPYWLCDGDNDCGDMSDED 558
             CNGV+DC+DN  SDE    C S +TC P    +C N   C+   W CDG NDCGD SDE+
Sbjct:  3672 CNGVDDCRDN--SDEQD--CES-MTCKPSGEFRCTNHR-CIPLRWRCDGQNDCGDRSDEE 3725

Query:   559 PLHCQQRTCPQNSFR 573
               +C  R C ++ FR
Sbjct:  3726 --NCAPRKCTESEFR 3738

GO:0031526 "brush border membrane" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0006766 "vitamin metabolic process" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|K7GS03 LOC100514839 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 941 (336.3 bits), Expect = 1.4e-93, P = 1.4e-93
 Identities = 222/604 (36%), Positives = 310/604 (51%)

Query:     3 GWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFA 62
             G D  +CK     +P+LIF+N+YY+R ++LD + Y+L+ Q L N VA+DF Y+E   Y+ 
Sbjct:    73 GGDPHSCKAVTDEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWT 132

Query:    63 DVAAK--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120
             DV  +   I R  +  +  + + R      +GLAVDWVG  LYW D+    ++V++L+G 
Sbjct:   133 DVTTQGSMIRRMHLNGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGA 192

Query:   121 NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179
              R  L  + +++PR + +    GY+Y++ W   + IG+IGMDGS  + I+  +  I WPN
Sbjct:   193 YRTVLVSSGLREPRALVVDVQNGYLYWTDWGDHSLIGRIGMDGSGRSVIV--DTKITWPN 250

Query:   180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT 239
              LTLDY TER+YWADA  DYI    LDG ++H+V+S Q +PH+FALTLFED++YWTDW T
Sbjct:   251 GLTLDYVTERIYWADAREDYIEFASLDGSNRHVVLS-QDIPHIFALTLFEDYVYWTDWET 309

Query:   240 KSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK--GTTRHAWLTAHRGSTTVADMI--- 294
             KSINRA K  G +  +L +T HRP D+HV+H L+      H     + G + +  +    
Sbjct:   310 KSINRAHKTTGTNKTLLISTLHRPMDLHVFHALRQPDVPNHPCKVNNGGCSNLCLLSPGG 369

Query:   295 -------RSVYLGSGNKEN--STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 345
                     + YLG G+  N  S C++SQF C N KCI +   C+ E DC D SDEP  C 
Sbjct:   370 GHKCACPTNFYLG-GDGRNCVSNCTASQFVCKNDKCIPFWWKCDTEDDCGDHSDEPPDCP 428

Query:   346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
               +C                 G + +C+TG         C   ++C +         A C
Sbjct:   429 EFKCRP---------------GQF-QCSTGI-CTNPAFICDGDNDCQDNSD-----EANC 466

Query:   406 HNRPCDKDTEFACRN-GHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTN 464
                 C   ++F C N   CIP ++ C           E    C +  C     +C     
Sbjct:   467 DIHVC-LPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERD--CPEVTCAPNQFQC--SIT 521

Query:   465 YRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGS----------------VCNGVNDCKD 508
              RCIP+   CD  +DC DGSDE P NC   + G                  C+G +DC D
Sbjct:   522 KRCIPRVWVCDRDNDCVDGSDE-PANCTQMTCGVDEFRCKDSGRCIPARWKCDGEDDCGD 580

Query:   509 NITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCP 568
                SDE    C    TC P+  +C N N CV   W CD DNDCGD SDE+   C  R C 
Sbjct:   581 G--SDEPKEECDER-TCEPYQFRCKN-NRCVPGRWQCDYDNDCGDNSDEES--CTPRPCS 634

Query:   569 QNSF 572
             ++ F
Sbjct:   635 ESEF 638

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P98157 LRP1 "Low-density lipoprotein receptor-related protein 1" [Gallus gallus (taxid:9031)]

 Score = 950 (339.5 bits), Expect = 1.5e-93, P = 1.5e-93
 Identities = 223/599 (37%), Positives = 310/599 (51%)

Query:     7 STCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA 66
             ++CK     +P+LIF+N+YY+R ++LD + Y+L+ Q L N VA+DF Y+E   Y+ DV  
Sbjct:  3016 TSCKAVTDEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWTDVTT 3075

Query:    67 K--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
             +   I R  +  +  + + R      +GLAVDWVG  LYW D+    ++V++L+G  R  
Sbjct:  3076 QGSMIRRMHINGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGAYRTV 3135

Query:   125 L-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
             L  + +++PR + +    GY+Y++ W   + IGKIGMDG+N + I+  +  I WPN LTL
Sbjct:  3136 LVNSGLREPRALVVDVQNGYLYWTDWGDHSLIGKIGMDGTNRSVIV--DTKITWPNGLTL 3193

Query:   184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSIN 243
             DY   R+YWADA  DYI    LDG ++H V+S Q +PH+FALTLFED+IYWTDW TKSIN
Sbjct:  3194 DYINSRIYWADAREDYIEFASLDGSNRHTVLS-QDIPHIFALTLFEDYIYWTDWETKSIN 3252

Query:   244 RADKFNGRDYRVLRNTTHRPYDIHVYHPLK--GTTRHAWLTAHRGSTTVADMI------- 294
             RA K  G +  +L +T HRP DIH+YHP +      H   T + G + +  +        
Sbjct:  3253 RAHKTTGANKTLLISTLHRPMDIHIYHPYRQPDVPNHPCKTNNAGCSNLCLLSPGGGHKC 3312

Query:   295 ---RSVYLGSGNKEN-STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECA 350
                 + YLGS  K   S C++SQF C N KCI +   C+ E DC D SDEP     ++C 
Sbjct:  3313 ACPTNFYLGSDGKTCVSNCTASQFVCKNDKCIPFWWKCDTEDDCGDRSDEP-----EDCP 3367

Query:   351 KVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPC 410
             +        KC     G + +C+TG         C   ++C +         A C    C
Sbjct:  3368 EF-------KC---RPGQF-QCSTGI-CTNPAFICDGDNDCQDNSD-----EANCDIHVC 3410

Query:   411 DKDTEFACRN-GHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIP 469
                ++F C N   CIP ++ C           E    C +  C     +C      RCIP
Sbjct:  3411 -LPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDEKD--CPEVTCAPNQFQCA--ITKRCIP 3465

Query:   470 KWLFCDGKDDCRDGSDELPQNCPLESLGS----------------VCNGVNDCKDNITSD 513
             +   CD  +DC DGSDE P NC   + G                  C+G +DC D   SD
Sbjct:  3466 RVWVCDRDNDCVDGSDE-PANCTQMTCGVDEFRCKDSGRCIPARWKCDGEDDCGDG--SD 3522

Query:   514 ETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSF 572
             E    C    TC P+  +C N N CV   W CD DNDCGD SDE+   C  R C ++ F
Sbjct:  3523 EPKEECDER-TCEPYQFRCKN-NRCVPGRWQCDYDNDCGDNSDEES--CTPRPCSESEF 3577

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

UNIPROTKB|Q07954 LRP1 "Prolow-density lipoprotein receptor-related protein 1" [Homo sapiens (taxid:9606)]

 Score = 944 (337.4 bits), Expect = 6.7e-93, P = 6.7e-93
 Identities = 222/603 (36%), Positives = 310/603 (51%)

Query:     3 GWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFA 62
             G D  +CK     +P+LIF+N+YY+R ++LD + Y+L+ Q L N VA+DF Y+E   Y+ 
Sbjct:  3015 GGDPHSCKAVTDEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWT 3074

Query:    63 DVAAK--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120
             DV  +   I R  +  +  + + R      +GLAVDWVG  LYW D+    ++V++L+G 
Sbjct:  3075 DVTTQGSMIRRMHLNGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGA 3134

Query:   121 NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179
              R  L  + +++PR + +    GY+Y++ W   + IG+IGMDGS+ + I+  +  I WPN
Sbjct:  3135 YRTVLVSSGLREPRALVVDVQNGYLYWTDWGDHSLIGRIGMDGSSRSVIV--DTKITWPN 3192

Query:   180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT 239
              LTLDY TER+YWADA  DYI    LDG ++H+V+S Q +PH+FALTLFED++YWTDW T
Sbjct:  3193 GLTLDYVTERIYWADAREDYIEFASLDGSNRHVVLS-QDIPHIFALTLFEDYVYWTDWET 3251

Query:   240 KSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK--GTTRHAWLTAHRGSTTVADMI--- 294
             KSINRA K  G +  +L +T HRP D+HV+H L+      H     + G + +  +    
Sbjct:  3252 KSINRAHKTTGTNKTLLISTLHRPMDLHVFHALRQPDVPNHPCKVNNGGCSNLCLLSPGG 3311

Query:   295 -------RSVYLGS-GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNV 346
                     + YLGS G    S C++SQF C N KCI +   C+ E DC D SDEP  C  
Sbjct:  3312 GHKCACPTNFYLGSDGRTCVSNCTASQFVCKNDKCIPFWWKCDTEDDCGDHSDEPPDCPE 3371

Query:   347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCH 406
              +C                 G + +C+TG         C   ++C +         A C 
Sbjct:  3372 FKCRP---------------GQF-QCSTGI-CTNPAFICDGDNDCQDNSD-----EANCD 3409

Query:   407 NRPCDKDTEFACRN-GHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNY 465
                C   ++F C N   CIP ++ C           E    C +  C     +C      
Sbjct:  3410 IHVC-LPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERD--CPEVTCAPNQFQC--SITK 3464

Query:   466 RCIPKWLFCDGKDDCRDGSDELPQNCPLESLGS----------------VCNGVNDCKDN 509
             RCIP+   CD  +DC DGSDE P NC   + G                  C+G +DC D 
Sbjct:  3465 RCIPRVWVCDRDNDCVDGSDE-PANCTQMTCGVDEFRCKDSGRCIPARWKCDGEDDCGDG 3523

Query:   510 ITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQ 569
               SDE    C    TC P+  +C N N CV   W CD DNDCGD SDE+   C  R C +
Sbjct:  3524 --SDEPKEECDER-TCEPYQFRCKN-NRCVPGRWQCDYDNDCGDNSDEES--CTPRPCSE 3577

Query:   570 NSF 572
             + F
Sbjct:  3578 SEF 3580

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0042953 "lipoprotein transport" evidence=NAS

GO:0042954 "lipoprotein transporter activity" evidence=NAS

GO:0034185 "apolipoprotein binding" evidence=IDA;IPI

GO:0004872 "receptor activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0070325 "lipoprotein particle receptor binding" evidence=IC

GO:0032429 "regulation of phospholipase A2 activity" evidence=ISS

GO:0032374 "regulation of cholesterol transport" evidence=ISS

GO:0032370 "positive regulation of lipid transport" evidence=ISS

GO:0010875 "positive regulation of cholesterol efflux" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0043277 "apoptotic cell clearance" evidence=ISS

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISS

GO:0032956 "regulation of actin cytoskeleton organization" evidence=ISS

GO:0035909 "aorta morphogenesis" evidence=ISS

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=ISS

GO:0032403 "protein complex binding" evidence=IDA

GO:0097242 "beta-amyloid clearance" evidence=TAS

UNIPROTKB|E2R4Q1 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 941 (336.3 bits), Expect = 1.4e-92, P = 1.4e-92
 Identities = 222/603 (36%), Positives = 309/603 (51%)

Query:     3 GWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFA 62
             G D  +CK     +P+LIF+N+YY+R ++LD + Y+L+ Q L N VA+DF Y+E   Y+ 
Sbjct:  2999 GGDPHSCKAVTDEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWT 3058

Query:    63 DVAAK--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120
             DV  +   I R  +  +  + + R      +GLAVDWVG  LYW D+    ++V++L+G 
Sbjct:  3059 DVTTQGSMIRRMHLNGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGA 3118

Query:   121 NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179
              R  L  + +++PR + +    GY+Y++ W   + IG+IGMDGS  + I+  +  I WPN
Sbjct:  3119 YRTVLVSSGLREPRALVVDVQNGYLYWTDWGDHSLIGRIGMDGSGRSVIV--DTKITWPN 3176

Query:   180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT 239
              LTLDY TER+YWADA  DYI    LDG ++H+V+S Q +PH+FALTLFED++YWTDW T
Sbjct:  3177 GLTLDYVTERIYWADAREDYIEFASLDGSNRHVVLS-QDIPHIFALTLFEDYVYWTDWET 3235

Query:   240 KSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK--GTTRHAWLTAHRGSTTVADMI--- 294
             KSINRA K  G +  +L +T HRP D+HV+H L+      H     + G + +  +    
Sbjct:  3236 KSINRAHKTMGTNKTLLISTLHRPMDLHVFHALRQPDVPNHPCKVNNGGCSNLCLLSPGG 3295

Query:   295 -------RSVYLGS-GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNV 346
                     + YLGS G    S C++SQF C N KCI +   C+ E DC D SDEP  C  
Sbjct:  3296 GHKCACPTNFYLGSDGRTCVSNCTASQFVCKNDKCIPFWWKCDTEDDCGDHSDEPPDCPE 3355

Query:   347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCH 406
              +C                 G + +C+TG         C   ++C +         A C 
Sbjct:  3356 FKCRP---------------GQF-QCSTGI-CTNPAFICDGDNDCQDNSD-----EANCD 3393

Query:   407 NRPCDKDTEFACRN-GHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNY 465
                C   ++F C N   CIP ++ C           E    C +  C     +C      
Sbjct:  3394 IHVC-LPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERD--CPEVTCAPNQFQC--SITK 3448

Query:   466 RCIPKWLFCDGKDDCRDGSDELPQNCPLESLGS----------------VCNGVNDCKDN 509
             RCIP+   CD  +DC DGSDE P NC   + G                  C+G +DC D 
Sbjct:  3449 RCIPRVWVCDRDNDCVDGSDE-PANCTQMTCGVDEFRCKDSGRCIPARWKCDGEDDCGDG 3507

Query:   510 ITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQ 569
               SDE    C    TC P+  +C N N CV   W CD DNDCGD SDE+   C  R C +
Sbjct:  3508 --SDEPKEECDER-TCEPYQFRCKN-NRCVPGRWQCDYDNDCGDNSDEES--CTPRPCSE 3561

Query:   570 NSF 572
             + F
Sbjct:  3562 SEF 3564

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|J9P315 LRP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 941 (336.3 bits), Expect = 1.4e-92, P = 1.4e-92
 Identities = 222/603 (36%), Positives = 309/603 (51%)

Query:     3 GWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFA 62
             G D  +CK     +P+LIF+N+YY+R ++LD + Y+L+ Q L N VA+DF Y+E   Y+ 
Sbjct:  3015 GGDPHSCKAVTDEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWT 3074

Query:    63 DVAAK--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120
             DV  +   I R  +  +  + + R      +GLAVDWVG  LYW D+    ++V++L+G 
Sbjct:  3075 DVTTQGSMIRRMHLNGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGA 3134

Query:   121 NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179
              R  L  + +++PR + +    GY+Y++ W   + IG+IGMDGS  + I+  +  I WPN
Sbjct:  3135 YRTVLVSSGLREPRALVVDVQNGYLYWTDWGDHSLIGRIGMDGSGRSVIV--DTKITWPN 3192

Query:   180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT 239
              LTLDY TER+YWADA  DYI    LDG ++H+V+S Q +PH+FALTLFED++YWTDW T
Sbjct:  3193 GLTLDYVTERIYWADAREDYIEFASLDGSNRHVVLS-QDIPHIFALTLFEDYVYWTDWET 3251

Query:   240 KSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK--GTTRHAWLTAHRGSTTVADMI--- 294
             KSINRA K  G +  +L +T HRP D+HV+H L+      H     + G + +  +    
Sbjct:  3252 KSINRAHKTMGTNKTLLISTLHRPMDLHVFHALRQPDVPNHPCKVNNGGCSNLCLLSPGG 3311

Query:   295 -------RSVYLGS-GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNV 346
                     + YLGS G    S C++SQF C N KCI +   C+ E DC D SDEP  C  
Sbjct:  3312 GHKCACPTNFYLGSDGRTCVSNCTASQFVCKNDKCIPFWWKCDTEDDCGDHSDEPPDCPE 3371

Query:   347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCH 406
              +C                 G + +C+TG         C   ++C +         A C 
Sbjct:  3372 FKCRP---------------GQF-QCSTGI-CTNPAFICDGDNDCQDNSD-----EANCD 3409

Query:   407 NRPCDKDTEFACRN-GHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNY 465
                C   ++F C N   CIP ++ C           E    C +  C     +C      
Sbjct:  3410 IHVC-LPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERD--CPEVTCAPNQFQC--SITK 3464

Query:   466 RCIPKWLFCDGKDDCRDGSDELPQNCPLESLGS----------------VCNGVNDCKDN 509
             RCIP+   CD  +DC DGSDE P NC   + G                  C+G +DC D 
Sbjct:  3465 RCIPRVWVCDRDNDCVDGSDE-PANCTQMTCGVDEFRCKDSGRCIPARWKCDGEDDCGDG 3523

Query:   510 ITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQ 569
               SDE    C    TC P+  +C N N CV   W CD DNDCGD SDE+   C  R C +
Sbjct:  3524 --SDEPKEECDER-TCEPYQFRCKN-NRCVPGRWQCDYDNDCGDNSDEES--CTPRPCSE 3577

Query:   570 NSF 572
             + F
Sbjct:  3578 SEF 3580

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E1BGJ0 LRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 941 (336.3 bits), Expect = 1.4e-92, P = 1.4e-92
 Identities = 222/605 (36%), Positives = 311/605 (51%)

Query:     3 GWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFA 62
             G D  +CK     +P+LIF+N+YY+R ++LD + Y+L+ Q L N VA+DF Y+E   Y+ 
Sbjct:  3014 GGDPHSCKAVTDEEPFLIFANRYYLRKLNLDGSNYTLLKQGLNNAVALDFDYREQMIYWT 3073

Query:    63 DVAAK--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120
             DV  +   I R  +  +  + + R      +GLAVDWVG  LYW D+    ++V++L+G 
Sbjct:  3074 DVTTQGSMIRRMHLNGSNVQVLHRTGLSNPDGLAVDWVGGNLYWCDKGRDTIEVSKLNGA 3133

Query:   121 NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179
              R  L  + +++PR + +    GY+Y++ W   + IG+IGMDGS+ + I+  +  I WPN
Sbjct:  3134 YRTVLVSSGLREPRALVVDVQNGYLYWTDWGDHSLIGRIGMDGSSRSVIV--DTKITWPN 3191

Query:   180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT 239
              LTLDY TER+YWADA  DYI    LDG ++H+V+S Q +PH+FALTLFED++YWTDW T
Sbjct:  3192 GLTLDYVTERIYWADAREDYIEFASLDGSNRHVVLS-QDIPHIFALTLFEDYVYWTDWET 3250

Query:   240 KSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK---GTTRHAWLTAHRGSTTVADMI-- 294
             KSINRA K  G +  +L +T HRP D+HV+H L+       H     + G + +  +   
Sbjct:  3251 KSINRAHKTTGTNKTLLISTLHRPMDLHVFHALRQPDAVPNHPCKVNNGGCSNLCLLSPG 3310

Query:   295 --------RSVYLGSGNKEN--STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHC 344
                      + YLG G+  N  S C++SQF C N KCI +   C+ E DC D SDEP  C
Sbjct:  3311 GGHKCACPTNFYLG-GDGRNCVSNCTASQFVCKNDKCIPFWWKCDTEDDCGDHSDEPPDC 3369

Query:   345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAM 404
                +C                 G + +C+TG         C   ++C +         A 
Sbjct:  3370 PEFKCRP---------------GQF-QCSTGI-CTNPAFICDGDNDCQDNSD-----EAN 3407

Query:   405 CHNRPCDKDTEFACRN-GHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKT 463
             C    C   ++F C N   CIP ++ C           E    C +  C     +C    
Sbjct:  3408 CDIHVC-LPSQFKCTNTNRCIPGIFRCNGQDNCGDGEDERD--CPEVTCAPNQFQC--SI 3462

Query:   464 NYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGS----------------VCNGVNDCK 507
               RCIP+   CD  +DC DGSDE P NC   + G                  C+G +DC 
Sbjct:  3463 TKRCIPRVWVCDRDNDCVDGSDE-PANCTQMTCGVDEFRCKDSGRCIPARWKCDGEDDCG 3521

Query:   508 DNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTC 567
             D   SDE    C    TC P+  +C N N CV   W CD DNDCGD SDE+   C  R C
Sbjct:  3522 DG--SDEPKEECDER-TCEPYQFRCKN-NRCVPGRWQCDYDNDCGDNSDEES--CTPRPC 3575

Query:   568 PQNSF 572
              ++ F
Sbjct:  3576 SESEF 3580

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IEA

GO:0097242 "beta-amyloid clearance" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0032429 "regulation of phospholipase A2 activity" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	573
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	2e-09
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	7e-09
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	1e-08
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	2e-08
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	2e-08
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	4e-08
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	1e-07
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	2e-07
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	5e-07
pfam00058	42	pfam00058, Ldl_recept_b, Low-density lipoprotein r	6e-07
pfam12662	24	pfam12662, cEGF, Complement Clr-like EGF-like	2e-06
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	3e-06
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	3e-06
smart00135	43	smart00135, LY, Low-density lipoprotein-receptor Y	1e-05
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	1e-05
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	2e-05
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	1e-04
pfam00058	42	pfam00058, Ldl_recept_b, Low-density lipoprotein r	4e-04
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	4e-04
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	0.002
pfam00058	42	pfam00058, Ldl_recept_b, Low-density lipoprotein r	0.003
COG3391	381	COG3391, COG3391, Uncharacterized conserved protei	0.003
cd01475	224	cd01475, vWA_Matrilin, VWA_Matrilin: In cartilagin	0.003

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH 209
               +  PN L +D+   RLYW D  LD I   +LDG +
Sbjct: 4   LSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 51.1 bits (123), Expect = 7e-09
 Identities = 19/30 (63%), Positives = 21/30 (70%)

Query: 413 DTEFACRNGHCIPKLWVCDFDNDCGDDSDE 442
             EF C NG CIP  WVCD ++DCGD SDE
Sbjct: 3   PNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 307 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
           STC   +F+C +G+CI    VC+ + DCED SDE
Sbjct: 1   STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDE 34

Length = 37

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 80  ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR 122
             ++        GLAVDW+  +LYW D     ++VA LDGTNR
Sbjct: 1   RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTNR 43

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 19/29 (65%), Positives = 20/29 (68%)

Query: 414 TEFACRNGHCIPKLWVCDFDNDCGDDSDE 442
            EF C NG CIP  WVCD  +DCGD SDE
Sbjct: 5   GEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 48.7 bits (117), Expect = 4e-08
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 309 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
           C  ++FRC NG+CI    VC+ E DC D SDE
Sbjct: 1   CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32

Length = 35

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
           TC   +F+C+NG+CI    VC+   DC D SDE
Sbjct: 1   TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 18/28 (64%), Positives = 19/28 (67%)

Query: 415 EFACRNGHCIPKLWVCDFDNDCGDDSDE 442
           EF C +G CIP  WVCD D DC D SDE
Sbjct: 7   EFQCGSGECIPMSWVCDGDPDCEDGSDE 34

Length = 37

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 46.0 bits (110), Expect = 5e-07
 Identities = 18/34 (52%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
           CPP+  +CAN   C+   W+CDG++DCGD SDE+
Sbjct: 1   CPPNEFRCAN-GRCIPSSWVCDGEDDCGDGSDEE 33

Length = 35

>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B

 Score = 45.6 bits (109), Expect = 6e-07
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 142 GYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY 185
           G +Y++  +L+A I    ++GS+   + +  +D+ WPN + +D 
Sbjct: 1   GRLYWTDSSLRASISVADLNGSDRRTLFS--EDLQWPNGIAVDP 42

This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42

>gnl|CDD|221695 pfam12662, cEGF, Complement Clr-like EGF-like

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 367 GYYCECNTGYKLLEDGKACTDIDE 390
            Y C C  GY+L  DG+ C DIDE
Sbjct: 1   SYTCSCPPGYQLSGDGRTCEDIDE 24

cEGF, or complement Clr-like EGF, domains have six conserved cysteine residues disulfide-bonded into the characteristic pattern 'ababcc'. They are found in blood coagulation proteins such as fibrillin, Clr and Cls, thrombomodulin, and the LDL receptor. The core fold of the EGF domain consists of two small beta-hairpins packed against each other. Two major structural variants have been identified based on the structural context of the C-terminal cysteine residue of disulfide 'c' in the C-terminal hairpin: hEGFs and cEGFs. In cEGFs the C-terminal thiol resides on the C-terminal beta-sheet, resulting in long loop-lengths between the cysteine residues of disulfide 'c', typically C[10+]XC. These longer loop-lengths may have arisen by selective cysteine loss from a four-disulfide EGF template such as laminin or integrin. Tandem cEGF domains have five linking residues between terminal cysteines of adjacent domains. cEGF domains may or may not bind calcium in the linker region. cEGF domains with the consensus motif CXN4X[F,Y]XCXC are hydroxylated exclusively on the asparagine residue. Length = 24

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 21/40 (52%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           C     RC    N RCIP    CDG+DDC DGSDE  +NC
Sbjct: 1   CPPNEFRC---ANGRCIPSSWVCDGEDDCGDGSDE--ENC 35

Length = 35

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 43.8 bits (104), Expect = 3e-06
 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
           TCPP   +C N   C+   W+CDG +DCGD SDE
Sbjct: 1   TCPPGEFQCDN-GRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|214531 smart00135, LY, Low-density lipoprotein-receptor YWTD domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 210 KHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252
           + ++ SG   P+  A+   E  +YWTDW    I  A+  +G +
Sbjct: 1   RTLLSSGLGHPNGLAVDWIEGRLYWTDWGLDVIEVAN-LDGTN 42

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin. Length = 43

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 19/35 (54%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 486
           C  G  +C    N RCIP    CDG DDC DGSDE
Sbjct: 2   CPPGEFQCD---NGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
           TC P   +C +   C+   W+CDGD DC D SDE 
Sbjct: 2   TCGPDEFQCGS-GECIPMSWVCDGDPDCEDGSDEK 35

Length = 37

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%)

Query: 464 NYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           +  CIP    CDG  DC DGSDE  +NC
Sbjct: 12  SGECIPMSWVCDGDPDCEDGSDE--KNC 37

Length = 37

>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 6/44 (13%)

Query: 100 RKLYWLD---RHSKQLDVAELDGTNRKTL-KTAIQDPRGITLHP 139
            +LYW D   R S  + VA+L+G++R+TL    +Q P GI + P
Sbjct: 1   GRLYWTDSSLRAS--ISVADLNGSDRRTLFSEDLQWPNGIAVDP 42

This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACT 386
           ++DECA     Q G  CV+T+  Y CEC  GY    DG+ C 
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGY---TDGRNCE 39

Length = 39

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKL 378
           ++DECA     Q G  CV+T+  Y C C  GY  
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|215683 pfam00058, Ldl_recept_b, Low-density lipoprotein receptor repeat class B

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)

Query: 230 DHIYWTDWNTKSINRADKFNGRDYR-VLRNTTHRPYDIHVYH 270
             +YWTD + ++       NG D R +       P  I V  
Sbjct: 1   GRLYWTDSSLRASISVADLNGSDRRTLFSEDLQWPNGIAVDP 42

This domain is also known as the YWTD motif after the most conserved region of the repeat. The YWTD repeat is found in multiple tandem repeats and has been predicted to form a beta-propeller structure. Length = 42

>gnl|CDD|225926 COG3391, COG3391, Uncharacterized conserved protein [Function unknown]

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 15/128 (11%)

Query: 47  VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD 106
           V   +    +N     D +  ++ R  VGS     V         G+AVD  G ++Y  +
Sbjct: 174 VYVTNSD--DNTVSVIDTSGNSVVRGSVGS----LVGVGTGPA--GIAVDPDGNRVYVAN 225

Query: 107 RHSKQLDVAELDGTNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG 162
             S   +V ++D        T        PRG+ + P     Y ++ +    +  I  DG
Sbjct: 226 DGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVAN-SQGGTVSVI--DG 282

Query: 163 SNFTRILT 170
           +    + T
Sbjct: 283 ATDRVVKT 290

Length = 381

>gnl|CDD|238752 cd01475, vWA_Matrilin, VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 344 CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKA 384
           C V +     ++ C   C+ T   Y C C  GY LLED K 
Sbjct: 184 CVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLEDNKT 224

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands. Length = 224

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	573
KOG1214|consensus	1289		100.0
KOG1215|consensus	877		99.98
KOG1214|consensus	1289		99.94
KOG1215|consensus	877		99.93
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.84
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.83
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.82
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.77
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.58
KOG4659|consensus	1899		99.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.46
PRK11028	330	6-phosphogluconolactonase; Provisional	99.43
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.42
PRK11028	330	6-phosphogluconolactonase; Provisional	99.42
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.37
COG3391	381	Uncharacterized conserved protein [Function unknow	99.36
COG3391	381	Uncharacterized conserved protein [Function unknow	99.36
KOG4659|consensus	1899		99.31
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.28
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.28
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.25
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	99.24
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.2
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.09
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.08
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.08
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.08
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.07
KOG1520|consensus	376		99.06
KOG1520|consensus	376		99.06
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.03
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.98
PRK04792	448	tolB translocation protein TolB; Provisional	98.97
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.94
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.93
KOG4499|consensus	310		98.88
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	98.87
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.87
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.86
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.86
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.86
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.84
PRK04922	433	tolB translocation protein TolB; Provisional	98.81
PRK04043	419	tolB translocation protein TolB; Provisional	98.8
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.79
PRK05137	435	tolB translocation protein TolB; Provisional	98.79
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.79
PRK03629	429	tolB translocation protein TolB; Provisional	98.78
PRK00178	430	tolB translocation protein TolB; Provisional	98.78
PRK02889	427	tolB translocation protein TolB; Provisional	98.75
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.72
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.7
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	98.7
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.68
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	98.68
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	98.64
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.62
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.56
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.52
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.47
PRK01742	429	tolB translocation protein TolB; Provisional	98.47
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.44
PRK01029	428	tolB translocation protein TolB; Provisional	98.42
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.42
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.42
PRK04792	448	tolB translocation protein TolB; Provisional	98.39
PRK05137	435	tolB translocation protein TolB; Provisional	98.39
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.35
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.32
PRK04922	433	tolB translocation protein TolB; Provisional	98.29
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.29
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.29
PRK04043	419	tolB translocation protein TolB; Provisional	98.25
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.21
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.21
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.17
PRK03629	429	tolB translocation protein TolB; Provisional	98.15
PRK02889	427	tolB translocation protein TolB; Provisional	98.14
PRK00178	430	tolB translocation protein TolB; Provisional	98.13
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	98.12
PRK01029	428	tolB translocation protein TolB; Provisional	98.11
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.99
KOG4499|consensus	310		97.96
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.95
PRK01742	429	tolB translocation protein TolB; Provisional	97.88
COG5276	370	Uncharacterized conserved protein [Function unknow	97.74
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.74
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	97.69
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.68
COG4946	668	Uncharacterized protein related to the periplasmic	97.54
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.54
PRK02888	635	nitrous-oxide reductase; Validated	97.49
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.48
PRK02888	635	nitrous-oxide reductase; Validated	97.44
COG4946	668	Uncharacterized protein related to the periplasmic	97.43
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.32
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.27
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.18
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.14
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.1
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.04
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.04
COG5276	370	Uncharacterized conserved protein [Function unknow	96.98
KOG0273|consensus	524		96.71
KOG0315|consensus	311		96.65
KOG0279|consensus	315		96.61
KOG1446|consensus	311		96.57
KOG2397|consensus	480		96.56
KOG0291|consensus	893		96.55
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.52
KOG0285|consensus	460		96.43
PRK13616	591	lipoprotein LpqB; Provisional	96.38
KOG0266|consensus	456		96.3
PF13449	326	Phytase-like: Esterase-like activity of phytase	96.3
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.3
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.29
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.26
PTZ00421	493	coronin; Provisional	96.26
KOG1219|consensus	4289		96.21
KOG0285|consensus	460		96.2
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	96.19
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.16
PTZ00421	493	coronin; Provisional	95.95
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	95.92
KOG1446|consensus	311		95.81
PHA02713	557	hypothetical protein; Provisional	95.77
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.76
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	95.67
KOG0268|consensus	433		95.63
PLN00181	793	protein SPA1-RELATED; Provisional	95.6
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	95.49
KOG4441|consensus	571		95.36
PLN00181	793	protein SPA1-RELATED; Provisional	95.35
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	95.25
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.23
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	95.13
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.12
KOG0289|consensus	506		95.02
KOG4328|consensus	498		94.99
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	94.94
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	94.92
KOG0268|consensus	433		94.9
KOG4378|consensus	673		94.87
PTZ00420	568	coronin; Provisional	94.86
KOG2048|consensus	691		94.83
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.82
KOG0318|consensus	603		94.81
KOG2397|consensus	480		94.78
KOG3509|consensus	964		94.68
PTZ00420	568	coronin; Provisional	94.65
PF12662	24	cEGF: Complement Clr-like EGF-like	94.65
KOG4328|consensus	498		94.63
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	94.47
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.34
KOG0270|consensus	463		94.24
KOG0291|consensus	893		94.08
PRK13616	591	lipoprotein LpqB; Provisional	94.0
KOG0286|consensus	343		93.96
KOG0270|consensus	463		93.93
KOG0266|consensus	456		93.86
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	93.81
KOG4378|consensus	673		93.7
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	93.43
KOG0281|consensus	499		93.2
smart00284	255	OLF Olfactomedin-like domains.	93.0
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	92.93
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	92.91
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.81
KOG1539|consensus	910		92.72
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	92.67
KOG0277|consensus	311		92.67
KOG2106|consensus	626		92.07
KOG0293|consensus	519		92.06
KOG0282|consensus	503		91.91
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	91.81
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	91.7
KOG0315|consensus	311		91.64
KOG0286|consensus	343		91.52
KOG0293|consensus	519		91.47
KOG0646|consensus	476		91.39
KOG1274|consensus	933		91.25
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	91.05
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	91.01
KOG0650|consensus	733		91.01
KOG0279|consensus	315		90.85
KOG1407|consensus	313		90.79
KOG3509|consensus	964		90.44
KOG4649|consensus	354		90.38
KOG0289|consensus	506		90.25
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	90.17
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	90.1
KOG0281|consensus	499		89.77
KOG0263|consensus	707		89.76
KOG0308|consensus	735		89.72
KOG0772|consensus	641		89.71
KOG0272|consensus	459		89.57
KOG0303|consensus	472		89.57
KOG0294|consensus	362		89.56
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	89.49
KOG4441|consensus	571		89.42
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.26
KOG0276|consensus	794		89.16
KOG4649|consensus	354		89.01
KOG0294|consensus	362		88.97
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	88.76
KOG0263|consensus	707		88.75
KOG2048|consensus	691		88.66
PF14339	236	DUF4394: Domain of unknown function (DUF4394)	88.58
KOG3914|consensus	390		88.51
KOG0646|consensus	476		88.4
KOG2139|consensus	445		88.1
COG3211	616	PhoX Predicted phosphatase [General function predi	87.94
KOG1036|consensus	323		87.84
KOG0296|consensus	399		87.63
KOG0308|consensus	735		87.35
KOG0318|consensus	603		87.31
KOG0276|consensus	794		87.22
KOG0272|consensus	459		87.05
KOG2110|consensus	391		86.76
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.53
KOG2106|consensus	626		86.21
KOG0310|consensus	487		86.0
KOG2055|consensus	514		85.66
KOG0772|consensus	641		84.93
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	84.8
KOG0319|consensus	775		84.51
KOG2055|consensus	514		83.75
KOG1517|consensus	1387		82.64
KOG1274|consensus	933		82.32
KOG0282|consensus	503		82.29
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	81.66
KOG0292|consensus	1202		81.47
KOG0269|consensus	839		81.39
PHA02713	557	hypothetical protein; Provisional	81.09
KOG1445|consensus	1012		80.97
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.71
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	80.65
COG3211	616	PhoX Predicted phosphatase [General function predi	80.04

>KOG1214|consensus

Probab=100.00  E-value=9.7e-46  Score=380.78  Aligned_cols=287  Identities=28%  Similarity=0.500  Sum_probs=253.5

Q ss_pred             CCCceeeCC-CCCCEEEEEecccEEEEEcCCCcee------ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC
Q psy952            5 DESTCKRRD-SIKPWLIFSNKYYVRNMSLDATQYS------LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST   77 (573)
Q Consensus         5 dg~~C~~~~-~~~~~l~~s~~~~I~~i~l~g~~~~------~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~   77 (573)
                      +++.|.... ..-.+|||++...|.++.|+|..+.      ++....+-|+||+||-++.+|||+|+...+|.|+.|+|.
T Consensus       978 p~~~~~v~p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~ 1057 (1289)
T KOG1214|consen  978 PTPRPDVTPPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGA 1057 (1289)
T ss_pred             CCCCCCCcCCCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCC
Confidence            556665543 3556999999999999999986542      344556678999999999999999999999999999999


Q ss_pred             cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCC-cCeE
Q psy952           78 EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNL-QAYI  155 (573)
Q Consensus        78 ~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I  155 (573)
                      ..++++..+|.+|+||||||+++++||||+...+|+|+.|||+.+++|+ ++|.+||+|++|+.+|.||||||.+ +++|
T Consensus      1058 Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkI 1137 (1289)
T KOG1214|consen 1058 EPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKI 1137 (1289)
T ss_pred             CCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcc
Confidence            9999999999999999999999999999999999999999999999998 7999999999999999999999975 7899


Q ss_pred             EEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEe
Q psy952          156 GKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWT  235 (573)
Q Consensus       156 ~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywt  235 (573)
                      ++.+|||.++++|+  .+++..||||+||+....|-|+|+++++++-+.++|..|+++..+  |.+||+|+-+++.+|||
T Consensus      1138 ets~mDG~NrRili--n~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~--LqYPF~itsy~~~fY~T 1213 (1289)
T KOG1214|consen 1138 ETSSMDGENRRILI--NTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNN--LQYPFSITSYADHFYHT 1213 (1289)
T ss_pred             eeeccCCccceEEe--ecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhc--ccCceeeeeccccceee
Confidence            99999999999999  799999999999999999999999999999999999999998877  89999999999999999


Q ss_pred             cCCCCceEEEeccCCcceEE-EcccCCCceeeeeeecC-----------CCcccccccccccCccceee-ecccee
Q psy952          236 DWNTKSINRADKFNGRDYRV-LRNTTHRPYDIHVYHPL-----------KGTTRHAWLTAHRGSTTVAD-MIRSVY  298 (573)
Q Consensus       236 d~~~~~I~~~~~~~g~~~~~-l~~~~~~p~~i~v~~~~-----------~~~Cs~lCl~~~~~~~~~~C-Cp~~~~  298 (573)
                      ||+.++|..+++..++.+.. +.......++|..+-++           .|+|.||||+.-   +...| ||+..+
T Consensus      1214 DWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~~~Cp~gstpCSedNGGCqHLCLpgq---ngavcecpdnvk 1286 (1289)
T KOG1214|consen 1214 DWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVYPYCPTGSTPCSEDNGGCQHLCLPGQ---NGAVCECPDNVK 1286 (1289)
T ss_pred             ccccCceEEeeccccccccccccccccceEEEEeccccCCCCCCcccccCCcceeecccCc---CCccccCCccce
Confidence            99999999999988876543 33344568888765443           199999999765   55678 887554

>KOG1215|consensus

Probab=99.98  E-value=1.6e-30  Score=298.27  Aligned_cols=291  Identities=36%  Similarity=0.682  Sum_probs=254.4

Q ss_pred             eeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCC
Q psy952            9 CKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSH   88 (573)
Q Consensus         9 C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~   88 (573)
                      |++.....+||++++++.|+++.++...+..++.....+.++++|..++.+||+|.....|.+..+++.....+...++-
T Consensus       401 c~~~~~~~~~l~~s~~~~ir~~~~~~~~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~  480 (877)
T KOG1215|consen  401 CEASDQPEAFLLFSNRHDIRRISLDCSDVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLC  480 (877)
T ss_pred             ceecCCCCcEEEEecCccceecccCCCcceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCcc
Confidence            77766789999999999999999998766666677688999999999999999999999999999999877667788889


Q ss_pred             CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE
Q psy952           89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR  167 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~  167 (573)
                      .|.+||+||+.+++||+|.....|.+.+++|..+++|+. .+..|+.++|+|.+++|||++|+..++|.|+.|||..+.+
T Consensus       481 ~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~  560 (877)
T KOG1215|consen  481 IPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAV  560 (877)
T ss_pred             ccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceE
Confidence            999999999999999999999999999999999888884 5688999999999999999999976699999999999999


Q ss_pred             EEecCCCCCCCceEEEeccCCeEEEEeCCCC-eEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952          168 ILTHEDDIAWPNALTLDYFTERLYWADAHLD-YIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       168 l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~-~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~  246 (573)
                      ++  ..++.+|+||++|...+++||+|.... .|.+++++|..++++.... +++|++++++++++||+||....+.+..
T Consensus       561 l~--~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~-~~~p~~~~~~~~~iyw~d~~~~~~~~~~  637 (877)
T KOG1215|consen  561 LV--TNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVDSED-LPHPFGLSVFEDYIYWTDWSNRAISRAE  637 (877)
T ss_pred             EE--eCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEecccc-CCCceEEEEecceeEEeeccccceEeee
Confidence            99  677999999999999999999999998 7999999999998333333 8999999999999999999999999999


Q ss_pred             ccCCcceEEEcccCCCceeeeeee-cCC------------CcccccccccccCccceee-eccceeecCCCCC
Q psy952          247 KFNGRDYRVLRNTTHRPYDIHVYH-PLK------------GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       247 ~~~g~~~~~l~~~~~~p~~i~v~~-~~~------------~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      +..+.....+......|..++++| ...            ++|+++|++.+.   ..+| ||.++.+..+++.
T Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p~---~~~c~c~~~~~l~~~~~~  707 (877)
T KOG1215|consen  638 KHKGSDSRTSRSNLAQPLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRPQ---GSTCACPEGYRLSPDGKS  707 (877)
T ss_pred             cccCCcceeeecccCcccceEEEeccccCCCCCCcccccCCCCCeeeecCCC---CCeeeCCCCCeecCCCCe
Confidence            888876223344456777777763 221            689999999992   2399 9999999887664

>KOG1214|consensus

Probab=99.94  E-value=7.6e-26  Score=234.43  Aligned_cols=209  Identities=23%  Similarity=0.412  Sum_probs=183.2

Q ss_pred             CCCEEEEEECCCCeEEEEEcCCCcc-----eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cC
Q psy952           55 KENRFYFADVAAKTIYRSRVGSTEK-----ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TA  128 (573)
Q Consensus        55 ~~~~ly~~d~~~~~I~~~~~~g~~~-----~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~  128 (573)
                      ...+|.++  ..++|.+..++|...     .+++...-+.|.||+||-..++|||+|....+|.++.|.|...++++ ++
T Consensus       989 ~gt~LL~a--qg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~ 1066 (1289)
T KOG1214|consen  989 VGTFLLYA--QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSG 1066 (1289)
T ss_pred             CcceEEEe--ccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCCCCceeeccc
Confidence            34556665  345799999988532     22344344789999999999999999999999999999999999988 79


Q ss_pred             CCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC--eEEEEeCC
Q psy952          129 IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD--YIASVDLD  206 (573)
Q Consensus       129 ~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~--~I~~~~~d  206 (573)
                      |..|.|||||...+.|||||. ...+|+++.|||+.+++|+  .++|..|.+|++|+..+.|||+||.+.  +|++.++|
T Consensus      1067 L~SPEGiAVDh~~Rn~ywtDS-~lD~IevA~LdG~~rkvLf--~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mD 1143 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDS-VLDKIEVALLDGSERKVLF--YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMD 1143 (1289)
T ss_pred             CCCccceeeeeccceeeeecc-ccchhheeecCCceeeEEE--eecccCcceEEeecccCceeeccccccCCcceeeccC
Confidence            999999999999999999995 4779999999999999999  799999999999999999999999754  89999999


Q ss_pred             CCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeee
Q psy952          207 GKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYH  270 (573)
Q Consensus       207 G~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~  270 (573)
                      |.++++|+... +.-|.||++  +...|-|.|.+++++.-+. .+|..++++.+.++.||+|.-+.
T Consensus      1144 G~NrRilin~D-igLPNGLtfdpfs~~LCWvDAGt~rleC~~-p~g~gRR~i~~~LqYPF~itsy~ 1207 (1289)
T KOG1214|consen 1144 GENRRILINTD-IGLPNGLTFDPFSKLLCWVDAGTKRLECTL-PDGTGRRVIQNNLQYPFSITSYA 1207 (1289)
T ss_pred             CccceEEeecc-cCCCCCceeCcccceeeEEecCCcceeEec-CCCCcchhhhhcccCceeeeecc
Confidence            99999999876 888999998  5678999999999999886 78999999999999999987654

>KOG1215|consensus

Probab=99.93  E-value=9.1e-25  Score=250.82  Aligned_cols=270  Identities=34%  Similarity=0.642  Sum_probs=209.4

Q ss_pred             cceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEE
Q psy952          132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH  211 (573)
Q Consensus       132 P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~  211 (573)
                      ||.||++|..++|||++|+. . |+    +|+.++.++  ...+.||+|++||+...++||+|.+.+.|++.+++|+.++
T Consensus         1 pra~~~~p~~~~l~wtd~~~-~-i~----dg~~~~~~~--~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~   72 (877)
T KOG1215|consen    1 PRAIALLPLEGLLFWTDWGA-N-IE----DGGERKILE--KEEFEWPNGLTIDLAWQRIYWADAKNDLIESANYDGSGRR   72 (877)
T ss_pred             CceEEeccccceEEEecCCc-c-cc----cCcceEEee--ccceeCCCcceecchhheeeeccccCCceEEeccCCccce
Confidence            78999999999999999987 4 66    777777777  7899999999999999999999999999999999998876


Q ss_pred             EEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeeecCC-CcccccccccccCccce
Q psy952          212 IVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK-GTTRHAWLTAHRGSTTV  290 (573)
Q Consensus       212 ~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~~~-~~Cs~lCl~~~~~~~~~  290 (573)
                                  +|++|++.+||+|   +.|...+|.+|+...++......|+.++++++.. ..+...|...       
T Consensus        73 ------------~l~~~~~~~y~~d---~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  130 (877)
T KOG1215|consen   73 ------------ALTLFEDGLYWTD---KSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPLAPDPCAES-------  130 (877)
T ss_pred             ------------eeeeeccceeecc---chhhhhccCCCCcceeehhcCCCCcceeEEecCCCCCCCCccccc-------
Confidence                        8999999999999   8899999999999999887776799998888764 1111111111       


Q ss_pred             eeeccceeecCCCCCCCcccCCccccC--CCeeeecceeeCCcCCCCCCCCCCCCCCCccccC-CCCCcc-------CC-
Q psy952          291 ADMIRSVYLGSGNKENSTCSSSQFRCN--NGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAK-VETNQC-------GH-  359 (573)
Q Consensus       291 ~CCp~~~~l~~d~~~~~~C~~~~~~C~--~g~Ci~~~~~cd~~~~c~d~sde~~~c~~~~C~~-~~~~~C-------~~-  359 (573)
                                 .......|...+|.|.  +++|+|..|.||+..+|.+++||. .|....+.. ...+.|       .- 
T Consensus       131 -----------~~~~~~~~~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~-~~~~~~~~~~~~~~~~~~~~~~~d~~  198 (877)
T KOG1215|consen  131 -----------GNGPCSHCCLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDEL-NCAVRRCEPRGASLDCIVAIKVCDIQ  198 (877)
T ss_pred             -----------CCCCCccccCCCCCCcCccccCCCCceeCCCCCccccchhhh-cccccccCccccccccceeeeecCcc
Confidence                       0111244556677887  789999999999999999999998 443221211 011222       11 


Q ss_pred             -ccccCCCCccccC-------CCCceecCCCcccccccccCCCCC-CCCCCC--CCCCCCCCCCCCceecCCCcccCCCc
Q psy952          360 -KCVDTLTGYYCEC-------NTGYKLLEDGKACTDIDECIEQPG-VCSQYP--AMCHNRPCDKDTEFACRNGHCIPKLW  428 (573)
Q Consensus       360 -~C~~~~~~~~C~C-------~~~f~c~~~~~c~~~~~~C~~~~~-~~~~~~--~~C~~~~C~~~~~f~C~~g~ci~~~~  428 (573)
                       .|....++..+..       ...++|....+|+..++.|++..+ ....++  ..|....|... ++.|.++.|++..+
T Consensus       199 ~~~~~~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~-e~~~~~~~~~~~~~  277 (877)
T KOG1215|consen  199 HDCADDYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAP-EIECADGDCSDRQK  277 (877)
T ss_pred             cccccccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCc-ceeecCCCCccceE
Confidence             4455555444433       256788777789999999999998 333333  46777778877 99999999999999


Q ss_pred             ccCCCCCCCCCCCCCC
Q psy952          429 VCDFDNDCGDDSDEPA  444 (573)
Q Consensus       429 ~Cd~~~dC~d~sDE~~  444 (573)
                      .|++..||.+++||..
T Consensus       278 ~~~g~~d~pdg~de~~  293 (877)
T KOG1215|consen  278 LCDGDLDCPDGLDEDY  293 (877)
T ss_pred             EecCccCCCCcccccc
Confidence            9999999999999974

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.84  E-value=6e-19  Score=173.04  Aligned_cols=211  Identities=22%  Similarity=0.327  Sum_probs=162.3

Q ss_pred             eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec
Q psy952           47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK  126 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~  126 (573)
                      +.|++||..++.|||+|...++|+++++++...+.+..   ..|.|++++...++||+++..  .+.++++.....+++.
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~---~~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL---PGPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES---SSEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec---CCCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEEe
Confidence            67999999999999999999999999998876654333   249999999777999999964  4555688776666665


Q ss_pred             c------CCCCcceEEEeCCCceEEEEecCCc-------CeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952          127 T------AIQDPRGITLHPGIGYVYFSSWNLQ-------AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       127 ~------~~~~P~~Iavdp~~g~LYwtd~~~~-------~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~  193 (573)
                      .      .+..|+++++|+ .|.||+++....       +.|+|...+|. .+.+.   ..+..|+||+++++++.||++
T Consensus        77 ~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~---~~~~~pNGi~~s~dg~~lyv~  151 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVA---DGLGFPNGIAFSPDGKTLYVA  151 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEE---EEESSEEEEEEETTSSEEEEE
T ss_pred             eccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe-EEEEe---cCcccccceEECCcchheeec
Confidence            3      355699999999 688999986431       57999999944 33444   568999999999999999999


Q ss_pred             eCCCCeEEEEeCCC--C---cEEEEEeCCc-cceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcccCCCceee
Q psy952          194 DAHLDYIASVDLDG--K---HKHIVISGQK-VPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDI  266 (573)
Q Consensus       194 D~~~~~I~~~~~dG--~---~~~~l~~~~~-~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i  266 (573)
                      |+..++|++++++.  .   +++++..... ...|.||+++ ++.||++.+..++|.++++. |+....+......|..+
T Consensus       152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~  230 (246)
T PF08450_consen  152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC  230 (246)
T ss_dssp             ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred             ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence            99999999999963  3   2355544221 3469999996 58899999999999999975 88777776555577666


Q ss_pred             ee
Q psy952          267 HV  268 (573)
Q Consensus       267 ~v  268 (573)
                      ++
T Consensus       231 ~f  232 (246)
T PF08450_consen  231 AF  232 (246)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.83  E-value=2.2e-18  Score=198.67  Aligned_cols=213  Identities=18%  Similarity=0.208  Sum_probs=165.8

Q ss_pred             cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-------------CCCCcceeEEeecCCcEEEEeCC
Q psy952           42 QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-------------DSHGLEGLAVDWVGRKLYWLDRH  108 (573)
Q Consensus        42 ~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-------------~~~~p~glavD~~~~~LY~td~~  108 (573)
                      .++..|.+|++|..++.||++|..+++|++++++|.....+...             .+..|.||++|..++.|||+|..
T Consensus       565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence            45677889999998999999999999999999988654433321             24679999999888889999999


Q ss_pred             CCeEEEEEcCCCceeEecc-----------------CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe-
Q psy952          109 SKQLDVAELDGTNRKTLKT-----------------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT-  170 (573)
Q Consensus       109 ~~~I~~~~ldg~~~~~l~~-----------------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~-  170 (573)
                      +++|.++++.+..++++..                 .+..|.+|+++|.++.||+++.+ ..+|.+.+.......++.. 
T Consensus       645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-~~~I~v~d~~~g~v~~~~G~  723 (1057)
T PLN02919        645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-QHQIWEYNISDGVTRVFSGD  723 (1057)
T ss_pred             CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-CCeEEEEECCCCeEEEEecC
Confidence            9999999998877766631                 14579999999999999999965 5678888775544333321 


Q ss_pred             -----------cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC--------------------Ccc
Q psy952          171 -----------HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG--------------------QKV  219 (573)
Q Consensus       171 -----------~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~--------------------~~~  219 (573)
                                 ....+..|.||++++.+++||++|...++|.++++++....++..+                    ..+
T Consensus       724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l  803 (1057)
T PLN02919        724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL  803 (1057)
T ss_pred             CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence                       0123678999999998889999999999999999986554433311                    014


Q ss_pred             ceeEEEeeeC-CeEEEecCCCCceEEEeccCCcceEE
Q psy952          220 PHVFALTLFE-DHIYWTDWNTKSINRADKFNGRDYRV  255 (573)
Q Consensus       220 ~~p~~ia~~~-~~lywtd~~~~~I~~~~~~~g~~~~~  255 (573)
                      .+|.||++.. +.||++|+.+++|.+++..++....+
T Consensus       804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti  840 (1057)
T PLN02919        804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL  840 (1057)
T ss_pred             cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            5899999964 67999999999999999766654443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.82  E-value=8.2e-18  Score=193.91  Aligned_cols=234  Identities=15%  Similarity=0.181  Sum_probs=179.0

Q ss_pred             CEEEEEe--cccEEEEEcCCCceeeccc--------------CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSLVHQ--------------DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE   80 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~--------------~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~   80 (573)
                      ..|++++  .+.|++++++|.....+..              .+..|.||++|..++.|||+|..+++|+++++.++...
T Consensus       580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~  659 (1057)
T PLN02919        580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVR  659 (1057)
T ss_pred             CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE
Confidence            4455554  5889999998864433221              24569999999988999999999999999998776665


Q ss_pred             EEEcCC----------------CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec---------------cCC
Q psy952           81 RVIRHD----------------SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK---------------TAI  129 (573)
Q Consensus        81 ~i~~~~----------------~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~---------------~~~  129 (573)
                      ++...+                +..|.+|++|+.++.||+++..+++|.++++.+....++.               ..+
T Consensus       660 tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~  739 (1057)
T PLN02919        660 TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSF  739 (1057)
T ss_pred             EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccc
Confidence            554321                4689999999989999999999999999998665444332               135


Q ss_pred             CCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec-------------------CCCCCCCceEEEeccCCeE
Q psy952          130 QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH-------------------EDDIAWPNALTLDYFTERL  190 (573)
Q Consensus       130 ~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~-------------------~~~l~~P~glaiD~~~~~L  190 (573)
                      ..|.||+++|..++||++|.. ..+|.+.++++.....++..                   ...+..|.||++|+ ++.|
T Consensus       740 ~~P~GIavspdG~~LYVADs~-n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~L  817 (1057)
T PLN02919        740 AQPSGISLSPDLKELYIADSE-SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQI  817 (1057)
T ss_pred             cCccEEEEeCCCCEEEEEECC-CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcE
Confidence            679999999988889999965 67899999875443333210                   01255799999995 5679


Q ss_pred             EEEeCCCCeEEEEeCCCCcEEEEEeCC------------ccceeEEEeee-CCeEEEecCCCCceEEEeccCCcc
Q psy952          191 YWADAHLDYIASVDLDGKHKHIVISGQ------------KVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRD  252 (573)
Q Consensus       191 Yw~D~~~~~I~~~~~dG~~~~~l~~~~------------~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~  252 (573)
                      |++|..+++|.+++.++.....+....            .+..|.||++. +++||++|..+++|.+++..++..
T Consensus       818 YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        818 YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            999999999999999877665554211            15689999995 578999999999999999877754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.77  E-value=1.8e-16  Score=155.53  Aligned_cols=211  Identities=18%  Similarity=0.201  Sum_probs=159.5

Q ss_pred             CCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-----CCC
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-----DSH   88 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-----~~~   88 (573)
                      ...|++++  ...|+++++++.........  .+.|++++..+++||+++...  +.++++.....+.++..     .+.
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~--~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g~~~~~~~~~~~~~~~~   86 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLP--GPNGMAFDRPDGRLYVADSGG--IAVVDPDTGKVTVLADLPDGGVPFN   86 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESS--SEEEEEEECTTSEEEEEETTC--EEEEETTTTEEEEEEEEETTCSCTE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecC--CCceEEEEccCCEEEEEEcCc--eEEEecCCCcEEEEeeccCCCcccC
Confidence            46777776  57899999988766543222  299999997789999999754  44458777666666543     467


Q ss_pred             CcceeEEeecCCcEEEEeCCC--------CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952           89 GLEGLAVDWVGRKLYWLDRHS--------KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM  160 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~--------~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l  160 (573)
                      .|+++++|. .++||+++...        +.|++++.+ ...+.+...+..|+||+++|..+.||+++.. ..+|+++.+
T Consensus        87 ~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~-~~~i~~~~~  163 (246)
T PF08450_consen   87 RPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF-NGRIWRFDL  163 (246)
T ss_dssp             EEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT-TTEEEEEEE
T ss_pred             CCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc-cceeEEEec
Confidence            999999997 56799999654        579999999 4456667789999999999998899999964 678999999


Q ss_pred             cCCC-----cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee---CCeE
Q psy952          161 DGSN-----FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF---EDHI  232 (573)
Q Consensus       161 dG~~-----~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~---~~~l  232 (573)
                      +...     +++++........|.||++|. +++||++.+..++|.+++.+|.....+...  ..+|..+++-   .+.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~G~~~~~i~~p--~~~~t~~~fgg~~~~~L  240 (246)
T PF08450_consen  164 DADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPDGKLLREIELP--VPRPTNCAFGGPDGKTL  240 (246)
T ss_dssp             ETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETTSCEEEEEE-S--SSSEEEEEEESTTSSEE
T ss_pred             cccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCCccEEEEEcCC--CCCEEEEEEECCCCCEE
Confidence            7433     344442122223599999994 789999999999999999998877766654  4699999993   4679


Q ss_pred             EEec
Q psy952          233 YWTD  236 (573)
Q Consensus       233 ywtd  236 (573)
                      |+|.
T Consensus       241 ~vTt  244 (246)
T PF08450_consen  241 YVTT  244 (246)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9985

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=2.8e-13  Score=134.92  Aligned_cols=209  Identities=18%  Similarity=0.225  Sum_probs=149.1

Q ss_pred             ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC
Q psy952           41 HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT  120 (573)
Q Consensus        41 ~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~  120 (573)
                      ........|..|++..+.|||+|+..++|++++...+..+++...+ ..+.++.+| ..++|..++.+...+.+  -.+.
T Consensus        21 ~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~-~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~~   96 (307)
T COG3386          21 DKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG-GFSSGALID-AGGRLIACEHGVRLLDP--DTGG   96 (307)
T ss_pred             ecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC-Ccccceeec-CCCeEEEEccccEEEec--cCCc
Confidence            3444456788899999999999999999999999755555554444 457788888 57788777755433332  2233


Q ss_pred             ceeEecc-----CCCCcceEEEeCCCceEEEEecC-----C-----cCeEEEEeccCCCcEEEEecCCCCCCCceEEEec
Q psy952          121 NRKTLKT-----AIQDPRGITLHPGIGYVYFSSWN-----L-----QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY  185 (573)
Q Consensus       121 ~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~-----~-----~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~  185 (573)
                      .++.+..     .+..|+.+.++| .|.+|+++.+     .     .+.|+|++.+|...+.+.   ..+..||||++++
T Consensus        97 ~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~---~~~~~~NGla~Sp  172 (307)
T COG3386          97 KITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD---DDLTIPNGLAFSP  172 (307)
T ss_pred             eeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec---CcEEecCceEECC
Confidence            3344432     346699999999 5899999876     2     347999998766655443   6699999999999


Q ss_pred             cCCeEEEEeCCCCeEEEEeCC---CC--cEE-EEEeCCccceeEEEeeeCCeEEE--ecCCCCceEEEeccCCcceEEEc
Q psy952          186 FTERLYWADAHLDYIASVDLD---GK--HKH-IVISGQKVPHVFALTLFEDHIYW--TDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       186 ~~~~LYw~D~~~~~I~~~~~d---G~--~~~-~l~~~~~~~~p~~ia~~~~~lyw--td~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      ++..||++|+..++|++++++   |.  +++ .+.....-..|.|++++.+..||  +-|...+|.++++. |+...++.
T Consensus       173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~  251 (307)
T COG3386         173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK  251 (307)
T ss_pred             CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence            999999999999999999987   21  122 22222124689999998766555  45555589999865 77666554


Q ss_pred             c
Q psy952          258 N  258 (573)
Q Consensus       258 ~  258 (573)
                      .
T Consensus       252 l  252 (307)
T COG3386         252 L  252 (307)
T ss_pred             C
Confidence            3

>KOG4659|consensus

Probab=99.58  E-value=6.9e-14  Score=152.31  Aligned_cols=225  Identities=17%  Similarity=0.211  Sum_probs=165.7

Q ss_pred             CCCCEEEEEecccEEEEEcCCCceeeccc---CCcceEEEEEEcCCCEEEEEECCCCeEEEEE-cCCC----cceEEEcC
Q psy952           14 SIKPWLIFSNKYYVRNMSLDATQYSLVHQ---DLLNVVAMDFHYKENRFYFADVAAKTIYRSR-VGST----EKERVIRH   85 (573)
Q Consensus        14 ~~~~~l~~s~~~~I~~i~l~g~~~~~~~~---~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~-~~g~----~~~~i~~~   85 (573)
                      ++.+.|++.+.+.|+||..+|...+++.-   ....-.-||++|..+.||++|....+|+|+. +.+.    +.++++..
T Consensus       373 a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~  452 (1899)
T KOG4659|consen  373 APDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD  452 (1899)
T ss_pred             cCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc
Confidence            56778899999999999999987665533   3344568999999999999999999999987 3332    44555544


Q ss_pred             C--------------------CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc------------------
Q psy952           86 D--------------------SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT------------------  127 (573)
Q Consensus        86 ~--------------------~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~------------------  127 (573)
                      +                    +..|.||||| ..++||++|..  .|.+++-+|-....+.+                  
T Consensus       453 Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t--~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~  529 (1899)
T KOG4659|consen  453 GEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGT--RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVD  529 (1899)
T ss_pred             CcCccccccccCcchhcccceeccCCceeEc-cCCcEEEeccc--EEEEeccCceEEEeccCCCCccCccccccccchhh
Confidence            3                    6789999999 57899999964  58888887755443321                  


Q ss_pred             -CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec------------------CCCCCCCceEEEeccCC
Q psy952          128 -AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH------------------EDDIAWPNALTLDYFTE  188 (573)
Q Consensus       128 -~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~------------------~~~l~~P~glaiD~~~~  188 (573)
                       .+.+|..|||+|..+.||+.|   ...|.|+..++..+ ++...                  ...+..|..||+. ..+
T Consensus       530 ~~leWPT~LaV~Pmdnsl~Vld---~nvvlrit~~~rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~~G  604 (1899)
T KOG4659|consen  530 LQLEWPTSLAVDPMDNSLLVLD---TNVVLRITVVHRVR-IILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-TDG  604 (1899)
T ss_pred             eeeecccceeecCCCCeEEEee---cceEEEEccCccEE-EEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-CCc
Confidence             356799999999999999999   66899998887765 33210                  1235567899998 579


Q ss_pred             eEEEEeCCCCeEEEEeCCCCcE--EEEEeC------------------------CccceeEEEee-eCCeEEEecCCCCc
Q psy952          189 RLYWADAHLDYIASVDLDGKHK--HIVISG------------------------QKVPHVFALTL-FEDHIYWTDWNTKS  241 (573)
Q Consensus       189 ~LYw~D~~~~~I~~~~~dG~~~--~~l~~~------------------------~~~~~p~~ia~-~~~~lywtd~~~~~  241 (573)
                      .||++++...+|-++..=+++.  .+++..                        ..+..|.+||| .++.||++|.++.+
T Consensus       605 ~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~r  684 (1899)
T KOG4659|consen  605 ALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSR  684 (1899)
T ss_pred             eEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchh
Confidence            9999998766555544333222  222211                        12678999999 57899999999998


Q ss_pred             eEEEe
Q psy952          242 INRAD  246 (573)
Q Consensus       242 I~~~~  246 (573)
                      |..+.
T Consensus       685 Ir~Vs  689 (1899)
T KOG4659|consen  685 IRKVS  689 (1899)
T ss_pred             hhhhh
Confidence            87654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.46  E-value=1.5e-10  Score=119.30  Aligned_cols=238  Identities=15%  Similarity=0.145  Sum_probs=160.8

Q ss_pred             CCCEEEEEec-----ccEEEEEcCC--Cceeec---ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC--CcceE-
Q psy952           15 IKPWLIFSNK-----YYVRNMSLDA--TQYSLV---HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS--TEKER-   81 (573)
Q Consensus        15 ~~~~l~~s~~-----~~I~~i~l~g--~~~~~~---~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~-   81 (573)
                      ...+|+.++.     ..|..+.++.  ..++.+   ......|..|++++.++.||+++...+.|..+.++.  ..... 
T Consensus        47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~  126 (345)
T PF10282_consen   47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV  126 (345)
T ss_dssp             TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred             CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence            3455665544     2555555443  333322   224566899999999999999999999998888764  22221 


Q ss_pred             -EEc----------CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc--eeE---e-ccCCCCcceEEEeCCCceE
Q psy952           82 -VIR----------HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN--RKT---L-KTAIQDPRGITLHPGIGYV  144 (573)
Q Consensus        82 -i~~----------~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~--~~~---l-~~~~~~P~~Iavdp~~g~L  144 (573)
                       ++.          .....|..+.+++.++.||++|.+.++|.+++++...  ...   + +.....||.|+++|...++
T Consensus       127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~  206 (345)
T PF10282_consen  127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYA  206 (345)
T ss_dssp             EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEE
T ss_pred             eecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEE
Confidence             221          1236788999999999999999999999999997654  221   1 2455679999999999999


Q ss_pred             EEEecCCcCeEEEEeccC-CCcEEEEe----cC---CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC--cEEEEE
Q psy952          145 YFSSWNLQAYIGKIGMDG-SNFTRILT----HE---DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGK--HKHIVI  214 (573)
Q Consensus       145 Ywtd~~~~~~I~r~~ldG-~~~~~l~~----~~---~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~--~~~~l~  214 (573)
                      |+++. ....|.++.++. ......+.    ..   ..-..|.+|+|++++++||++..+.+.|..++++..  ..+.+.
T Consensus       207 Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~  285 (345)
T PF10282_consen  207 YVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ  285 (345)
T ss_dssp             EEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred             EEecC-CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence            99984 366788887772 22211111    01   112368899999999999999999999999988542  333322


Q ss_pred             ---eCCccceeEEEee--eCCeEEEecCCCCceEEE--eccCCcceEE
Q psy952          215 ---SGQKVPHVFALTL--FEDHIYWTDWNTKSINRA--DKFNGRDYRV  255 (573)
Q Consensus       215 ---~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~--~~~~g~~~~~  255 (573)
                         .+  -..|.+|++  .+.+||+++..++.|..+  +..+|....+
T Consensus       286 ~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~  331 (345)
T PF10282_consen  286 TVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV  331 (345)
T ss_dssp             EEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             EEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence               22  246999988  678999999998887654  5556654443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.43  E-value=2e-10  Score=117.70  Aligned_cols=228  Identities=12%  Similarity=0.110  Sum_probs=152.9

Q ss_pred             EEEEEe--cccEEEEEcCC-Cceee--cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-ceEEEc-CCCCCc
Q psy952           18 WLIFSN--KYYVRNMSLDA-TQYSL--VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-KERVIR-HDSHGL   90 (573)
Q Consensus        18 ~l~~s~--~~~I~~i~l~g-~~~~~--~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~i~~-~~~~~p   90 (573)
                      ++++++  ...|+.++++. ...+.  .+.....+..|++++..+.||++....+.|..++++... .+.+.. .....|
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p   82 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP   82 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence            455554  56788888852 22222  223346688999999999999998877888777775322 221211 112479


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcC--CCceeEe--ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELD--GTNRKTL--KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ld--g~~~~~l--~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      .+|++++.++.||.+....+.|.+++++  |...+.+  +.....|.+++++|..++||+++.+ ..+|...+++.....
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-~~~v~v~d~~~~g~l  161 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-EDRIRLFTLSDDGHL  161 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-CCEEEEEEECCCCcc
Confidence            9999999999999999888999998876  3222222  2355679999999998999999965 567777777532111


Q ss_pred             -----EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC--CcEEEEEe-CC------ccceeEEEee--eCC
Q psy952          167 -----RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG--KHKHIVIS-GQ------KVPHVFALTL--FED  230 (573)
Q Consensus       167 -----~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG--~~~~~l~~-~~------~~~~p~~ia~--~~~  230 (573)
                           ..+. ...-..|.++++++.+++||+++...+.|..++++.  ...+.+.. ..      ...+|.+|++  .+.
T Consensus       162 ~~~~~~~~~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~  240 (330)
T PRK11028        162 VAQEPAEVT-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR  240 (330)
T ss_pred             cccCCCcee-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence                 0110 123457999999999999999999899998888862  22222221 10      0123445665  456


Q ss_pred             eEEEecCCCCceEEEec
Q psy952          231 HIYWTDWNTKSINRADK  247 (573)
Q Consensus       231 ~lywtd~~~~~I~~~~~  247 (573)
                      +||+++...+.|..++.
T Consensus       241 ~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        241 HLYACDRTASLISVFSV  257 (330)
T ss_pred             EEEEecCCCCeEEEEEE
Confidence            89999888888876654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.42  E-value=2.4e-10  Score=117.73  Aligned_cols=241  Identities=14%  Similarity=0.125  Sum_probs=164.5

Q ss_pred             ccEEEEEcC--CCceeec--ccCCcceEEEEEEcCCCEEEEEEC---CCCeEEEEEcCCC--cceEE--EcCCCCCccee
Q psy952           25 YYVRNMSLD--ATQYSLV--HQDLLNVVAMDFHYKENRFYFADV---AAKTIYRSRVGST--EKERV--IRHDSHGLEGL   93 (573)
Q Consensus        25 ~~I~~i~l~--g~~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~---~~~~I~~~~~~g~--~~~~i--~~~~~~~p~gl   93 (573)
                      ..|+.+.++  ...++.+  +....+|.-|++++.++.||.++.   ..+.|..+.++..  ..+.+  +...-..|-.|
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            477777774  3344332  345677999999999999999998   4677777776542  22222  11123688999


Q ss_pred             EEeecCCcEEEEeCCCCeEEEEEcCC--CceeE--ec-----------cCCCCcceEEEeCCCceEEEEecCCcCeEEEE
Q psy952           94 AVDWVGRKLYWLDRHSKQLDVAELDG--TNRKT--LK-----------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI  158 (573)
Q Consensus        94 avD~~~~~LY~td~~~~~I~~~~ldg--~~~~~--l~-----------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~  158 (573)
                      ++|+.++.||+++...+.|.+++++.  .....  ++           +...+|..+.++|..++||++|.+ ..+|...
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-~D~v~~~  171 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-ADRVYVY  171 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-TTEEEEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-CCEEEEE
Confidence            99999999999999999999988864  33332  11           134569999999999999999976 5688888


Q ss_pred             eccCCC--c---EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC--CCcEEEEEe-C----C--ccceeEE
Q psy952          159 GMDGSN--F---TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD--GKHKHIVIS-G----Q--KVPHVFA  224 (573)
Q Consensus       159 ~ldG~~--~---~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~l~~-~----~--~~~~p~~  224 (573)
                      .++...  .   ..+.  ......|+.|++++.+.++|++....+.|..++++  ....+.+.. .    .  ....|.+
T Consensus       172 ~~~~~~~~l~~~~~~~--~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  249 (345)
T PF10282_consen  172 DIDDDTGKLTPVDSIK--VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE  249 (345)
T ss_dssp             EE-TTS-TEEEEEEEE--CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred             EEeCCCceEEEeeccc--cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence            887654  2   1222  45567899999999999999999999999998887  322222211 1    0  0126888


Q ss_pred             Eeee--CCeEEEecCCCCceEEEec--cCCcceE--EEcccCCCceeeee
Q psy952          225 LTLF--EDHIYWTDWNTKSINRADK--FNGRDYR--VLRNTTHRPYDIHV  268 (573)
Q Consensus       225 ia~~--~~~lywtd~~~~~I~~~~~--~~g~~~~--~l~~~~~~p~~i~v  268 (573)
                      |++.  +.+||+++...+.|..++.  .+|....  .+...-..|.++.+
T Consensus       250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~  299 (345)
T PF10282_consen  250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF  299 (345)
T ss_dssp             EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred             EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence            8884  6789999999998776654  3444322  23333446877776

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.42  E-value=5.3e-10  Score=114.65  Aligned_cols=250  Identities=12%  Similarity=0.097  Sum_probs=160.3

Q ss_pred             CEEEEEe--cccEEEEEcCC-Cceeec--ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC--CCcceEEE-cCCCC
Q psy952           17 PWLIFSN--KYYVRNMSLDA-TQYSLV--HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG--STEKERVI-RHDSH   88 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g-~~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~--g~~~~~i~-~~~~~   88 (573)
                      .+|+++.  ...|..+++++ ..++.+  ......|..|++++.++.||.+....+.|..++++  |...+.+. ..+..
T Consensus        47 ~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~  126 (330)
T PRK11028         47 RHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE  126 (330)
T ss_pred             CEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC
Confidence            4666654  36676666642 222221  22334689999999999999999888888888775  32222221 12345


Q ss_pred             CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-ee-----E-eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952           89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RK-----T-LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~-----~-l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      .|.++++++.++.||+++...++|.+++++... ..     . -+.....|++++++|..++||+++.. ...|...+++
T Consensus       127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-~~~v~v~~~~  205 (330)
T PRK11028        127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-NSSVDVWQLK  205 (330)
T ss_pred             cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-CCEEEEEEEe
Confidence            799999999999999999999999999986421 11     0 11234569999999999999999854 4677777765


Q ss_pred             C--CCcEEEEe---cCC---CCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC--CCcEEEEEeCCccceeEEEee--eC
Q psy952          162 G--SNFTRILT---HED---DIAWPNALTLDYFTERLYWADAHLDYIASVDLD--GKHKHIVISGQKVPHVFALTL--FE  229 (573)
Q Consensus       162 G--~~~~~l~~---~~~---~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~l~~~~~~~~p~~ia~--~~  229 (573)
                      .  ...+.+..   ...   .-.+|.+|++++.+++||+++...+.|..++++  +...+++..-.....|.++++  .+
T Consensus       206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg  285 (330)
T PRK11028        206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSG  285 (330)
T ss_pred             CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCC
Confidence            2  22222211   011   123556799999999999998888888887764  433333322110235666776  57


Q ss_pred             CeEEEecCCCCceEEE--eccCCcceE--EEcccCCCceeeee
Q psy952          230 DHIYWTDWNTKSINRA--DKFNGRDYR--VLRNTTHRPYDIHV  268 (573)
Q Consensus       230 ~~lywtd~~~~~I~~~--~~~~g~~~~--~l~~~~~~p~~i~v  268 (573)
                      .+||++....+.|..+  +..+|....  .+.. ...|..|+|
T Consensus       286 ~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~  327 (330)
T PRK11028        286 KYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMWVSV  327 (330)
T ss_pred             CEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence            7999999888876655  434444221  1222 346777766

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.37  E-value=2.6e-10  Score=113.68  Aligned_cols=215  Identities=13%  Similarity=0.113  Sum_probs=146.9

Q ss_pred             CCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-eEEEcC----CCC
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-ERVIRH----DSH   88 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~i~~~----~~~   88 (573)
                      ...|++++  ...|+++++.....+..........++.+| ..+.|+.++..   +++++++.... +.+...    ...
T Consensus        36 ~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d-~~g~Lv~~~~g---~~~~~~~~~~~~t~~~~~~~~~~~~  111 (307)
T COG3386          36 RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALID-AGGRLIACEHG---VRLLDPDTGGKITLLAEPEDGLPLN  111 (307)
T ss_pred             CCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeec-CCCeEEEEccc---cEEEeccCCceeEEeccccCCCCcC
Confidence            34577776  578999988744443333333335666777 46777776654   33344343333 333221    257


Q ss_pred             CcceeEEeecCCcEEEEeCC-----------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEE
Q psy952           89 GLEGLAVDWVGRKLYWLDRH-----------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGK  157 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~-----------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r  157 (573)
                      +|+.+.+|+. +.+|+++..           .+.|+++++.|...+.+...+..|+|||++|.+..||++|.. ..+|+|
T Consensus       112 r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~-~~~i~r  189 (307)
T COG3386         112 RPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP-ANRIHR  189 (307)
T ss_pred             CCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC-CCeEEE
Confidence            8999999974 889999876           257899998776666555669999999999999999999964 678999


Q ss_pred             Eecc---CCC--cEEEEecCCCCCCCceEEEeccCCeEE-EEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC--
Q psy952          158 IGMD---GSN--FTRILTHEDDIAWPNALTLDYFTERLY-WADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE--  229 (573)
Q Consensus       158 ~~ld---G~~--~~~l~~~~~~l~~P~glaiD~~~~~LY-w~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~--  229 (573)
                      ..++   |..  +...+.....-..|.|+++| .++.|| ++-++...|.+++.+|.....+...  ...|..+++-+  
T Consensus       190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP--~~~~t~~~FgG~~  266 (307)
T COG3386         190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLP--VKRPTNPAFGGPD  266 (307)
T ss_pred             EecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEEEECC--CCCCccceEeCCC
Confidence            9887   321  22222102234679999999 677888 4444455999999998777666543  35788888866  


Q ss_pred             -CeEEEecCCC
Q psy952          230 -DHIYWTDWNT  239 (573)
Q Consensus       230 -~~lywtd~~~  239 (573)
                       +.||+|-...
T Consensus       267 ~~~L~iTs~~~  277 (307)
T COG3386         267 LNTLYITSARS  277 (307)
T ss_pred             cCEEEEEecCC
Confidence             7899996554

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=2.7e-10  Score=118.57  Aligned_cols=237  Identities=13%  Similarity=0.121  Sum_probs=170.3

Q ss_pred             EEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEe
Q psy952           27 VRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD  106 (573)
Q Consensus        27 I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td  106 (573)
                      +..++..+..+...+.....|.++++.+....+||++.....|..++......+.....+...|.++++...+.++|+++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~   92 (381)
T COG3391          13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT   92 (381)
T ss_pred             eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec
Confidence            55555555555444444558999999999999999998777676666552222333334447899999999999999999


Q ss_pred             CCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEec
Q psy952          107 RHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY  185 (573)
Q Consensus       107 ~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~  185 (573)
                      ...+.|.++++........+.....|.+|+++|..+.||+++.+ ....|.+++.........+   .....|.++++++
T Consensus        93 ~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~---~vG~~P~~~a~~p  169 (381)
T COG3391          93 GDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI---PVGNTPTGVAVDP  169 (381)
T ss_pred             CCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE---ecCCCcceEEECC
Confidence            98899999996654443333333389999999999999999975 3677888776644332222   2233689999999


Q ss_pred             cCCeEEEEeCCCCeEEEEeCCCCcEEEEEe----CCccceeEEEee--eCCeEEEecCCC--CceEEEeccCCcceEE--
Q psy952          186 FTERLYWADAHLDYIASVDLDGKHKHIVIS----GQKVPHVFALTL--FEDHIYWTDWNT--KSINRADKFNGRDYRV--  255 (573)
Q Consensus       186 ~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~----~~~~~~p~~ia~--~~~~lywtd~~~--~~I~~~~~~~g~~~~~--  255 (573)
                      .+.++|+++...++|..++..+..... ..    -.....|.++++  .+.++|+++..+  +.|.+++..++.....  
T Consensus       170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~  248 (381)
T COG3391         170 DGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL  248 (381)
T ss_pred             CCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence            999999999999999999987766553 11    011467888888  567899999988  6899998777665544  


Q ss_pred             EcccCCCceeeee
Q psy952          256 LRNTTHRPYDIHV  268 (573)
Q Consensus       256 l~~~~~~p~~i~v  268 (573)
                      ..... .|+++.+
T Consensus       249 ~~~~~-~~~~v~~  260 (381)
T COG3391         249 PVGSG-APRGVAV  260 (381)
T ss_pred             ccccC-CCCceeE
Confidence            22333 5665544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=5.3e-10  Score=116.40  Aligned_cols=209  Identities=14%  Similarity=0.140  Sum_probs=159.7

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC--CCCeEEEEEcCCCce
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR--HSKQLDVAELDGTNR  122 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~--~~~~I~~~~ldg~~~  122 (573)
                      ..|.++++.....++|+.+...+.|..++++.......+..+ ..|.+|++++.++.||+++.  ..+.|.+++......
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            568899999999999999999999999996654433333334 39999999999999999998  468999999876554


Q ss_pred             eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe---cCCCCCCCceEEEeccCCeEEEEeCCC--
Q psy952          123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT---HEDDIAWPNALTLDYFTERLYWADAHL--  197 (573)
Q Consensus       123 ~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~---~~~~l~~P~glaiD~~~~~LYw~D~~~--  197 (573)
                      ...+.....|.+++++|....+|+++. ....|..++..+..... -.   .......|.++++++.+.++|+++...  
T Consensus       153 ~~~~~vG~~P~~~a~~p~g~~vyv~~~-~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~  230 (381)
T COG3391         153 TATIPVGNTPTGVAVDPDGNKVYVTNS-DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS  230 (381)
T ss_pred             EEEEecCCCcceEEECCCCCeEEEEec-CCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence            444444447999999999888999994 46788888877665442 10   024567899999999999999999987  


Q ss_pred             CeEEEEeCCCCcEEEE-EeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          198 DYIASVDLDGKHKHIV-ISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       198 ~~I~~~~~dG~~~~~l-~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      +.|..++......... .....+ .|.++++  .+..+|+++...+.|..++..+......+.
T Consensus       231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         231 NNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             ceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            6888888876655443 222225 7888887  567899998888999999876666555443

>KOG4659|consensus

Probab=99.31  E-value=1.8e-10  Score=126.37  Aligned_cols=209  Identities=20%  Similarity=0.283  Sum_probs=149.7

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC---CCCcceeEEeecCCcEEEEeCCCCeEEEEE-cCC
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD---SHGLEGLAVDWVGRKLYWLDRHSKQLDVAE-LDG  119 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~---~~~p~glavD~~~~~LY~td~~~~~I~~~~-ldg  119 (573)
                      +-.|++||+-+ ++.||+.|.+  -|.|+..+|....+ +.-+   ...-.-||+|++.+.||++|....+|+++. |.+
T Consensus       364 L~aPvala~a~-DGSl~VGDfN--yIRRI~~dg~v~tI-l~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~  439 (1899)
T KOG4659|consen  364 LFAPVALAYAP-DGSLIVGDFN--YIRRISQDGQVSTI-LTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP  439 (1899)
T ss_pred             eeceeeEEEcC-CCcEEEccch--heeeecCCCceEEE-EEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCc
Confidence            44589999985 8999999865  69999999876553 3323   344567999999999999999999888764 443


Q ss_pred             Cce----eEec---------------------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec---
Q psy952          120 TNR----KTLK---------------------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH---  171 (573)
Q Consensus       120 ~~~----~~l~---------------------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~---  171 (573)
                      +..    ++++                     ..|..|+|||||. .|.||++|   ...|.+++.+|-...++-+.   
T Consensus       440 ~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD---~t~IR~iD~~giIstlig~~~~~  515 (1899)
T KOG4659|consen  440 QDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFAD---GTRIRVIDTTGIISTLIGTTPDQ  515 (1899)
T ss_pred             cccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEec---ccEEEEeccCceEEEeccCCCCc
Confidence            221    2222                     1345699999998 89999999   34788887777655444310   


Q ss_pred             -------------CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-------------------Ccc
Q psy952          172 -------------EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-------------------QKV  219 (573)
Q Consensus       172 -------------~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-------------------~~~  219 (573)
                                   .-.|.||..|||+|.++.||+.|  ++.|.++..++.-+ +++..                   ..+
T Consensus       516 ~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl  592 (1899)
T KOG4659|consen  516 HPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVR-IILGRPTHCDLANATSSASKLADHRTL  592 (1899)
T ss_pred             cCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEE-EEcCCccccccCCCchhhhhhhhhhhh
Confidence                         12378999999999999999998  57899998887555 22210                   003


Q ss_pred             ceeEEEee-eCCeEEEecCCCCceEEEeccCCcceEEEcccCCCc
Q psy952          220 PHVFALTL-FEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRP  263 (573)
Q Consensus       220 ~~p~~ia~-~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p  263 (573)
                      ..|.+|++ ..+.||+++....+|.|+.+.+....-.+..+...|
T Consensus       593 ~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~  637 (1899)
T KOG4659|consen  593 LIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSP  637 (1899)
T ss_pred             hhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCC
Confidence            34678888 678999999999999888876655544444444333

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.28  E-value=1e-08  Score=102.71  Aligned_cols=246  Identities=13%  Similarity=0.060  Sum_probs=160.8

Q ss_pred             EEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952           18 WLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAV   95 (573)
Q Consensus        18 ~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glav   95 (573)
                      .|+++.  .+.|+.+++.+......+.....+..+++++.++.||.+....+.|+.+++........+..+ ..|.++++
T Consensus        44 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~  122 (300)
T TIGR03866        44 LLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAV  122 (300)
T ss_pred             EEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEE
Confidence            444443  467888888765443323333446788999988889998877789999998754322222222 36889999


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc-EEEEec---
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF-TRILTH---  171 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~-~~l~~~---  171 (573)
                      ++.+..|+++......+...++..............|..++++|...+||++.. ....|...++..... ..+...   
T Consensus       123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~v~i~d~~~~~~~~~~~~~~~~  201 (300)
T TIGR03866       123 SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE-IGGTVSVIDVATRKVIKKITFEIPG  201 (300)
T ss_pred             CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC-CCCEEEEEEcCcceeeeeeeecccc
Confidence            987777766665444566667664433222222346899999998777877642 245677777764332 222100   


Q ss_pred             -CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEecc
Q psy952          172 -EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       172 -~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~  248 (573)
                       ......|.++++++.+..+|++....++|..++............  -..+.+|++  .+.+||.+....+.|...+..
T Consensus       202 ~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       202 VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe--CCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence             012235778999988899999887778898888865443322221  124667776  556788887778899999988


Q ss_pred             CCcceEEEcccCCCceeeee
Q psy952          249 NGRDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       249 ~g~~~~~l~~~~~~p~~i~v  268 (573)
                      +++.+..+..+ ..|++|++
T Consensus       280 ~~~~~~~~~~~-~~~~~~~~  298 (300)
T TIGR03866       280 ALKVIKSIKVG-RLPWGVVV  298 (300)
T ss_pred             CCcEEEEEEcc-cccceeEe
Confidence            88877777553 68888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.28  E-value=5.1e-10  Score=116.11  Aligned_cols=201  Identities=17%  Similarity=0.230  Sum_probs=136.0

Q ss_pred             eeeccc--CCcceEEEEEEcCCCEEEEEECC-----------C-CeEEEEEc-C--CC-cceEEEcCCCCCcceeEEeec
Q psy952           37 YSLVHQ--DLLNVVAMDFHYKENRFYFADVA-----------A-KTIYRSRV-G--ST-EKERVIRHDSHGLEGLAVDWV   98 (573)
Q Consensus        37 ~~~~~~--~~~~~~~v~~d~~~~~ly~~d~~-----------~-~~I~~~~~-~--g~-~~~~i~~~~~~~p~glavD~~   98 (573)
                      +++++.  .+.+|++|++|. .++||+++..           . .+|+++.- +  |. ...+++..++..|.||++.. 
T Consensus         4 ~~l~A~~p~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-   81 (367)
T TIGR02604         4 VTLFAAEPLLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-   81 (367)
T ss_pred             EEEEECCCccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-
Confidence            344443  378899999995 6889999852           2 38888764 3  32 23356667889999999975 


Q ss_pred             CCcEEEEeCCCCeEEEE-EcCCC-----ceeEeccCC--------CCcceEEEeCCCceEEEEecCC-------------
Q psy952           99 GRKLYWLDRHSKQLDVA-ELDGT-----NRKTLKTAI--------QDPRGITLHPGIGYVYFSSWNL-------------  151 (573)
Q Consensus        99 ~~~LY~td~~~~~I~~~-~ldg~-----~~~~l~~~~--------~~P~~Iavdp~~g~LYwtd~~~-------------  151 (573)
                      ++ ||+++.  ..|.++ +.++.     .+++|++.+        ..|++|+++| .|+||++....             
T Consensus        82 ~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~  157 (367)
T TIGR02604        82 GG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDE  157 (367)
T ss_pred             CC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccC
Confidence            44 999974  457776 44442     344555422        2388999999 68999987521             


Q ss_pred             -----cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC------------CC------
Q psy952          152 -----QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD------------GK------  208 (573)
Q Consensus       152 -----~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d------------G~------  208 (573)
                           .+.|+|++.+|+..+++.   ..+..|.||++|+ .+.||++|.......+++.-            +.      
T Consensus       158 ~~~~~~g~i~r~~pdg~~~e~~a---~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~  233 (367)
T TIGR02604       158 SRQGLGGGLFRYNPDGGKLRVVA---HGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHAD  233 (367)
T ss_pred             cccccCceEEEEecCCCeEEEEe---cCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCCccccccc
Confidence                 146999999998877665   6799999999996 78999998865544443311            10      


Q ss_pred             ---cEEE---------------EEeCCccceeEEEeeeC---------CeEEEecCCCCceEEEec
Q psy952          209 ---HKHI---------------VISGQKVPHVFALTLFE---------DHIYWTDWNTKSINRADK  247 (573)
Q Consensus       209 ---~~~~---------------l~~~~~~~~p~~ia~~~---------~~lywtd~~~~~I~~~~~  247 (573)
                         ..+.               +..-.....|.|++++.         +.+|+++|..+.|.++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l  299 (367)
T TIGR02604       234 RGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSL  299 (367)
T ss_pred             ccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEe
Confidence               0000               00000023688988862         578999999999988864

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.25  E-value=1.6e-09  Score=112.44  Aligned_cols=210  Identities=19%  Similarity=0.240  Sum_probs=137.4

Q ss_pred             cEEEEEc---CCC--ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEE-cCCC-----cceEEEcC---C----C
Q psy952           26 YVRNMSL---DAT--QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR-VGST-----EKERVIRH---D----S   87 (573)
Q Consensus        26 ~I~~i~l---~g~--~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~-~~g~-----~~~~i~~~---~----~   87 (573)
                      +|+++.-   +|.  ..++++..+..|.||++.. ++ ||+++.  ..|+++. .++.     .+++++..   .    .
T Consensus        48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~  123 (367)
T TIGR02604        48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHH  123 (367)
T ss_pred             EEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccc
Confidence            6777664   233  2356677888899999985 45 999864  4688774 4442     33444321   1    2


Q ss_pred             CCcceeEEeecCCcEEEEeCC-------------------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEe
Q psy952           88 HGLEGLAVDWVGRKLYWLDRH-------------------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS  148 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~-------------------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd  148 (573)
                      +.+.+|++++ .++||++...                   .+.|++++++|...+++..++.+|.||++++ .|.||++|
T Consensus       124 ~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~-~G~l~~td  201 (367)
T TIGR02604       124 HSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS-WGDVFFCD  201 (367)
T ss_pred             ccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC-CCCEEEEc
Confidence            4488999997 5799998762                   1579999999998888888999999999999 78999998


Q ss_pred             cCCcCeEEEEec------------cCCC---------cEE-----------EEe---cCCCCCCCceEEEe-------cc
Q psy952          149 WNLQAYIGKIGM------------DGSN---------FTR-----------ILT---HEDDIAWPNALTLD-------YF  186 (573)
Q Consensus       149 ~~~~~~I~r~~l------------dG~~---------~~~-----------l~~---~~~~l~~P~glaiD-------~~  186 (573)
                      .... ...++..            .+..         .+.           ++.   .......|.|+++-       .-
T Consensus       202 n~~~-~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~  280 (367)
T TIGR02604       202 NDDP-PLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEY  280 (367)
T ss_pred             cCCC-ceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHH
Confidence            6422 2222211            0000         000           000   01112368899987       34


Q ss_pred             CCeEEEEeCCCCeEEEEeCC--CCcE----EEEEeC-CccceeEEEeee-CCeEEEecCCCCce
Q psy952          187 TERLYWADAHLDYIASVDLD--GKHK----HIVISG-QKVPHVFALTLF-EDHIYWTDWNTKSI  242 (573)
Q Consensus       187 ~~~LYw~D~~~~~I~~~~~d--G~~~----~~l~~~-~~~~~p~~ia~~-~~~lywtd~~~~~I  242 (573)
                      .+.||++++..++|.++.++  |...    ..++.. ....+|..|++. ++.||++||...-|
T Consensus       281 ~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~~~i  344 (367)
T TIGR02604       281 RGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYDRGI  344 (367)
T ss_pred             CCCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEeccCcc
Confidence            58899999999999999876  4322    122322 213689999984 67899999876444

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=99.24  E-value=9.1e-09  Score=99.28  Aligned_cols=200  Identities=11%  Similarity=0.124  Sum_probs=126.5

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC--Cc
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG--TN  121 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg--~~  121 (573)
                      ..++.||+|++.+++||.+.-..+.|+.++++|...+.+-..+...++||++- -++.+.+++...++|.++.++.  ..
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~   99 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTS   99 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccccc
Confidence            34599999999999999999889999999999887777766778899999994 2344444666678898888732  21


Q ss_pred             e--e---Eec---c--CCCCcceEEEeCCCceEEEEecCCcCeEEEEec--cCCCcEEEEe-----cCCCCCCCceEEEe
Q psy952          122 R--K---TLK---T--AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM--DGSNFTRILT-----HEDDIAWPNALTLD  184 (573)
Q Consensus       122 ~--~---~l~---~--~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l--dG~~~~~l~~-----~~~~l~~P~glaiD  184 (573)
                      .  .   .+-   .  +-....|||.|+.++.||++.-.....|+....  .+....+...     ....+..|.+|++|
T Consensus       100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~  179 (248)
T PF06977_consen  100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD  179 (248)
T ss_dssp             --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred             cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence            1  1   111   1  112378999999999999997544446777776  3333222221     12245678999999


Q ss_pred             ccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe-C------CccceeEEEeee-CCeEEEecCCCCceEEE
Q psy952          185 YFTERLYWADAHLDYIASVDLDGKHKHIVIS-G------QKVPHVFALTLF-EDHIYWTDWNTKSINRA  245 (573)
Q Consensus       185 ~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~-~------~~~~~p~~ia~~-~~~lywtd~~~~~I~~~  245 (573)
                      +..+.||+......+|..++.+|..+..+.- .      ..+++|-|||++ ++.||++.- -+..+++
T Consensus       180 p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f  247 (248)
T PF06977_consen  180 PRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF  247 (248)
T ss_dssp             TTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence            9999999999999999999999986655432 2      126789999996 578998864 3445443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.20  E-value=4e-08  Score=98.51  Aligned_cols=229  Identities=10%  Similarity=0.031  Sum_probs=149.4

Q ss_pred             ecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           23 NKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        23 ~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ..+.|+++++........+.....+.++++++.++.||.+....+.|+.+++.+......+..+ ..+..+++++.++.|
T Consensus         9 ~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l   87 (300)
T TIGR03866         9 KDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFALHPNGKIL   87 (300)
T ss_pred             CCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEEECCCCCEE
Confidence            3578888998755443333444557889999888889999888889999998765433323222 457889999888889


Q ss_pred             EEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEE
Q psy952          103 YWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT  182 (573)
Q Consensus       103 Y~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~gla  182 (573)
                      |.+....+.|.+.++........+.....|.+++++|...+|+++.. ....+...++.........   ..-..|..++
T Consensus        88 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~  163 (300)
T TIGR03866        88 YIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSE-TTNMAHFIDTKTYEIVDNV---LVDQRPRFAE  163 (300)
T ss_pred             EEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEec-CCCeEEEEeCCCCeEEEEE---EcCCCccEEE
Confidence            99887778999999876432222233345899999996666666553 2334445555433222111   1224678899


Q ss_pred             EeccCCeEEEEeCCCCeEEEEeCCCCcE-EEEEeC--C---ccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceE
Q psy952          183 LDYFTERLYWADAHLDYIASVDLDGKHK-HIVISG--Q---KVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYR  254 (573)
Q Consensus       183 iD~~~~~LYw~D~~~~~I~~~~~dG~~~-~~l~~~--~---~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~  254 (573)
                      +++.+.+||++....+.|..+++..... +.+...  .   ....|.++++  .+..+|++....++|...+..+++...
T Consensus       164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~  243 (300)
T TIGR03866       164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD  243 (300)
T ss_pred             ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence            9988888888766678888888875432 222111  0   0124667776  355678887777788888876666544


Q ss_pred             EE
Q psy952          255 VL  256 (573)
Q Consensus       255 ~l  256 (573)
                      .+
T Consensus       244 ~~  245 (300)
T TIGR03866       244 YL  245 (300)
T ss_pred             EE
Confidence            43

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.09  E-value=6e-11  Score=78.03  Aligned_cols=36  Identities=50%  Similarity=1.214  Sum_probs=33.3

Q ss_pred             CcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCC
Q psy952          524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC  562 (573)
Q Consensus       524 ~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c  562 (573)
                      .|.+++|+|.++ .||+..|+|||..||.|||||.  +|
T Consensus         2 ~C~~~~f~C~~~-~CI~~~~~CDg~~DC~dgsDE~--~C   37 (37)
T PF00057_consen    2 TCPPGEFRCGNG-QCIPKSWVCDGIPDCPDGSDEQ--NC   37 (37)
T ss_dssp             SSSTTEEEETTS-SEEEGGGTTSSSCSSSSSTTTS--SH
T ss_pred             cCcCCeeEcCCC-CEEChHHcCCCCCCCCCCcccc--cC
Confidence            477899999999 7999999999999999999997  65

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.08  E-value=3.8e-07  Score=89.23  Aligned_cols=210  Identities=17%  Similarity=0.189  Sum_probs=143.6

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEc--CCCcceE---EEcCC--------CCCcceeEEeecCCcEEEEeCCCC
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRV--GSTEKER---VIRHD--------SHGLEGLAVDWVGRKLYWLDRHSK  110 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~--~g~~~~~---i~~~~--------~~~p~glavD~~~~~LY~td~~~~  110 (573)
                      ...|.-|++|..+..||.++...+.|.++.+  +|.-...   +...+        -..+...-+++.++.|++.|-+..
T Consensus        88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence            3446889999999999999999998888776  4432222   22222        122667788999999999999999


Q ss_pred             eEEEEEcCCCceeE----eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC--CcEEEE---ecCCCC---CCC
Q psy952          111 QLDVAELDGTNRKT----LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS--NFTRIL---THEDDI---AWP  178 (573)
Q Consensus       111 ~I~~~~ldg~~~~~----l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~--~~~~l~---~~~~~l---~~P  178 (573)
                      +|.+++++-.....    .+.....||.|+++|...+.|...- -++.|.+...++.  ..+.|.   ...+++   .|-
T Consensus       168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~  246 (346)
T COG2706         168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA  246 (346)
T ss_pred             eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence            99999987332222    2245567999999999999998873 4678888887764  222221   112233   344


Q ss_pred             ceEEEeccCCeEEEEeCCCCeEEEEeC--CCCcEEEEEe---CCccceeEEEeeeCCeEEEecCCCCc--eEEEeccCCc
Q psy952          179 NALTLDYFTERLYWADAHLDYIASVDL--DGKHKHIVIS---GQKVPHVFALTLFEDHIYWTDWNTKS--INRADKFNGR  251 (573)
Q Consensus       179 ~glaiD~~~~~LYw~D~~~~~I~~~~~--dG~~~~~l~~---~~~~~~p~~ia~~~~~lywtd~~~~~--I~~~~~~~g~  251 (573)
                      .+|.|.+++..||.++.+.+.|..+..  +|+..+.+..   ....++-|.|+-.++.|+.+...++.  |+++++.+|.
T Consensus       247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~  326 (346)
T COG2706         247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR  326 (346)
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence            579999999999999999987766554  5555444432   11134445555567889999777665  5677888876


Q ss_pred             ceE
Q psy952          252 DYR  254 (573)
Q Consensus       252 ~~~  254 (573)
                      ...
T Consensus       327 L~~  329 (346)
T COG2706         327 LTL  329 (346)
T ss_pred             EEe
Confidence            443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.08  E-value=2.3e-08  Score=102.04  Aligned_cols=217  Identities=22%  Similarity=0.248  Sum_probs=137.8

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE------cCCCCCcceeEEee---cCCcEEEEeCCC-----
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI------RHDSHGLEGLAVDW---VGRKLYWLDRHS-----  109 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~------~~~~~~p~glavD~---~~~~LY~td~~~-----  109 (573)
                      +.+|.+|+|.+. ++||+++. .++|+++..+|.....+.      ..+...+.|||+++   .++.||++-...     
T Consensus         1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~   78 (331)
T PF07995_consen    1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG   78 (331)
T ss_dssp             ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred             CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence            467999999985 89999998 889999997776523322      12346788999998   357888876532     


Q ss_pred             ---CeEEEEEcCCC-----ceeEecc-------CCCCcceEEEeCCCceEEEEecC------------CcCeEEEEeccC
Q psy952          110 ---KQLDVAELDGT-----NRKTLKT-------AIQDPRGITLHPGIGYVYFSSWN------------LQAYIGKIGMDG  162 (573)
Q Consensus       110 ---~~I~~~~ldg~-----~~~~l~~-------~~~~P~~Iavdp~~g~LYwtd~~------------~~~~I~r~~ldG  162 (573)
                         .+|.++.++..     ..++|+.       ....-.+|+++| .|+|||+-..            ..++|.|++.||
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG  157 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG  157 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence               47888777644     2333432       123367899999 6799999531            135899999999


Q ss_pred             C-------------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC---eEEEEeCCCCc--------------E--
Q psy952          163 S-------------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD---YIASVDLDGKH--------------K--  210 (573)
Q Consensus       163 ~-------------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~---~I~~~~~dG~~--------------~--  210 (573)
                      +             ..+++.   .++..|.+|++|+..++||.+|.+..   .|.++.. |.+              .  
T Consensus       158 ~~p~dnP~~~~~~~~~~i~A---~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~~~~~~~  233 (331)
T PF07995_consen  158 SIPADNPFVGDDGADSEIYA---YGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPKYSGPPI  233 (331)
T ss_dssp             SB-TTSTTTTSTTSTTTEEE---E--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCSTTSS-E
T ss_pred             cCCCCCccccCCCceEEEEE---eCCCccccEEEECCCCcEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCCCCCCcc
Confidence            7             344443   78999999999988899999997764   3444432 111              0  


Q ss_pred             ----------EEEEe-CCccceeEEEeee--------CCeEEEecCCCCceEEEeccCCcce---EEEcccCC-Cceeee
Q psy952          211 ----------HIVIS-GQKVPHVFALTLF--------EDHIYWTDWNTKSINRADKFNGRDY---RVLRNTTH-RPYDIH  267 (573)
Q Consensus       211 ----------~~l~~-~~~~~~p~~ia~~--------~~~lywtd~~~~~I~~~~~~~g~~~---~~l~~~~~-~p~~i~  267 (573)
                                .-++. .. ...|.|++++        .+.+|++++..++|.++...++..+   +.+..... .|.+|+
T Consensus       234 ~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~  312 (331)
T PF07995_consen  234 GDAPSCPGFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVA  312 (331)
T ss_dssp             CTGSS-TTS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEE
T ss_pred             ccccCCCCcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEE
Confidence                      00011 11 2468899986        5679999999999999986544332   22232232 555655


Q ss_pred             e
Q psy952          268 V  268 (573)
Q Consensus       268 v  268 (573)
                      +
T Consensus       313 ~  313 (331)
T PF07995_consen  313 Q  313 (331)
T ss_dssp             E
T ss_pred             E
Confidence            4

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.08  E-value=2.3e-07  Score=94.00  Aligned_cols=230  Identities=12%  Similarity=0.073  Sum_probs=149.2

Q ss_pred             CEEEEEec------ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEEC---------CCCeEEEEEcCCCcceE
Q psy952           17 PWLIFSNK------YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV---------AAKTIYRSRVGSTEKER   81 (573)
Q Consensus        17 ~~l~~s~~------~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~~~   81 (573)
                      ..+++.+.      +.|.+|+.+..++.-.++....|.++ +.+.++.||++..         ....|..+++.......
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~   91 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA   91 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence            34555553      57999999887665445555678887 9999999999999         78899999987644322


Q ss_pred             EEcCC-------CCCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCCc------------------------------ee
Q psy952           82 VIRHD-------SHGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGTN------------------------------RK  123 (573)
Q Consensus        82 i~~~~-------~~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~~------------------------------~~  123 (573)
                      -+..+       ...|..+++.+.++.||+++.. .+.|.++|+....                              ..
T Consensus        92 ~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~  171 (352)
T TIGR02658        92 DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAK  171 (352)
T ss_pred             EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEE
Confidence            22222       2345599999999999999855 6666666654321                              11


Q ss_pred             E---------ecc-C---------CCCcceEEEeC-CCceEEEEecCCcCeEEEEeccCCCcEEEEe--c-CCC----CC
Q psy952          124 T---------LKT-A---------IQDPRGITLHP-GIGYVYFSSWNLQAYIGKIGMDGSNFTRILT--H-EDD----IA  176 (573)
Q Consensus       124 ~---------l~~-~---------~~~P~~Iavdp-~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~--~-~~~----l~  176 (573)
                      +         ..+ .         +.+|   ++.+ ..++||++.   .+.|..+++.+........  . ...    --
T Consensus       172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~---eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~w  245 (352)
T TIGR02658       172 VGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTY---TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGW  245 (352)
T ss_pred             EEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEec---CCeEEEEecCCCcceecceeeecccccccccc
Confidence            0         000 0         0223   2233 344444444   3789999877654333210  0 111    12


Q ss_pred             CCce---EEEeccCCeEEEEe-CCC--------CeEEEEeCCCCcEEEE-EeCCccceeEEEee--eCC-eEEEecCCCC
Q psy952          177 WPNA---LTLDYFTERLYWAD-AHL--------DYIASVDLDGKHKHIV-ISGQKVPHVFALTL--FED-HIYWTDWNTK  240 (573)
Q Consensus       177 ~P~g---laiD~~~~~LYw~D-~~~--------~~I~~~~~dG~~~~~l-~~~~~~~~p~~ia~--~~~-~lywtd~~~~  240 (573)
                      .|.|   +++++.+++||++. ...        +.|..+|.....+..- ..+   ..|.+|++  ++. .||.+++.++
T Consensus       246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~  322 (352)
T TIGR02658       246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDK  322 (352)
T ss_pred             CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCC
Confidence            4666   99999999999953 222        5899998865544332 233   36777777  566 8999999999


Q ss_pred             ceEEEeccCCcceEEE
Q psy952          241 SINRADKFNGRDYRVL  256 (573)
Q Consensus       241 ~I~~~~~~~g~~~~~l  256 (573)
                      .|..++..+++.+..+
T Consensus       323 ~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       323 TLYIFDAETGKELSSV  338 (352)
T ss_pred             cEEEEECcCCeEEeee
Confidence            9999998888877776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.07  E-value=7e-11  Score=76.95  Aligned_cols=35  Identities=54%  Similarity=1.458  Sum_probs=32.3

Q ss_pred             cCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCC
Q psy952          525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC  562 (573)
Q Consensus       525 C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c  562 (573)
                      |.+++|+|.++ .|||..|+|||..||+|||||.  +|
T Consensus         1 C~~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~--~C   35 (35)
T cd00112           1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEE--NC   35 (35)
T ss_pred             CCCCeEEcCCC-CeeCHHHcCCCccCCCCCcccc--cC
Confidence            56789999997 9999999999999999999998  65

>KOG1520|consensus

Probab=99.06  E-value=9.6e-09  Score=101.97  Aligned_cols=144  Identities=19%  Similarity=0.210  Sum_probs=113.2

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC----CCCCcceeEEeecCCcEEEEeCCC-----------
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH----DSHGLEGLAVDWVGRKLYWLDRHS-----------  109 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~----~~~~p~glavD~~~~~LY~td~~~-----------  109 (573)
                      ++|.||+|+.+++.||++|..-+ ++.++..|...+.+...    .+.-.++|.||. ++.|||||+..           
T Consensus       115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~  192 (376)
T KOG1520|consen  115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAA  192 (376)
T ss_pred             CCcceEEeccCCCeEEEEeccee-eEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEee
Confidence            67999999999999999998775 78888888765544332    245678999998 99999999653           


Q ss_pred             ------CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc---EEEEecCCCCCCCce
Q psy952          110 ------KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF---TRILTHEDDIAWPNA  180 (573)
Q Consensus       110 ------~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~---~~l~~~~~~l~~P~g  180 (573)
                            |++.++|...+..++|+.+|.-|+|||+.|...++.+++.. ..+|.|..+.|...   ++++  ..--..|.-
T Consensus       193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~-~~ri~rywi~g~k~gt~EvFa--~~LPG~PDN  269 (376)
T KOG1520|consen  193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT-TARIKRYWIKGPKAGTSEVFA--EGLPGYPDN  269 (376)
T ss_pred             ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec-cceeeeeEecCCccCchhhHh--hcCCCCCcc
Confidence                  56666666667777888999999999999999999999954 67899999998876   6666  334457889


Q ss_pred             EEEeccCCeEEEEe
Q psy952          181 LTLDYFTERLYWAD  194 (573)
Q Consensus       181 laiD~~~~~LYw~D  194 (573)
                      |..+ .++..|++-
T Consensus       270 IR~~-~~G~fWVal  282 (376)
T KOG1520|consen  270 IRRD-STGHFWVAL  282 (376)
T ss_pred             eeEC-CCCCEEEEE
Confidence            9988 556655553

>KOG1520|consensus

Probab=99.06  E-value=3.5e-09  Score=105.03  Aligned_cols=176  Identities=15%  Similarity=0.115  Sum_probs=129.3

Q ss_pred             CCEEEEEECCCCeEEEEEcCC-C---cce---EEEcC-CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc
Q psy952           56 ENRFYFADVAAKTIYRSRVGS-T---EKE---RVIRH-DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT  127 (573)
Q Consensus        56 ~~~ly~~d~~~~~I~~~~~~g-~---~~~---~i~~~-~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~  127 (573)
                      ++.|+|+-...+-|.++...- .   ...   .+-.. -=++|-||+++..++.||++|...| +.++++.|...+.+..
T Consensus        75 g~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~  153 (376)
T KOG1520|consen   75 GRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLAD  153 (376)
T ss_pred             CceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEeccee-eEEECCCCCcceeccc
Confidence            556788887777777766521 1   111   11111 1279999999999999999998765 7778888877555553


Q ss_pred             -----CCCCcceEEEeCCCceEEEEecCC----------------cCeEEEEeccCCCcEEEEecCCCCCCCceEEEecc
Q psy952          128 -----AIQDPRGITLHPGIGYVYFSSWNL----------------QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF  186 (573)
Q Consensus       128 -----~~~~P~~Iavdp~~g~LYwtd~~~----------------~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~  186 (573)
                           .+.-..++.|++ +|.|||||.+.                .+++.+.+..-...++|.   ++|..||||++.++
T Consensus       154 ~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl---d~L~F~NGlaLS~d  229 (376)
T KOG1520|consen  154 EAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL---DGLYFPNGLALSPD  229 (376)
T ss_pred             cccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh---hcccccccccCCCC
Confidence                 234478999999 99999999753                124455554444444554   78999999999999


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCcE---EEEEeCCccceeEEEeeeCCeEEEecC
Q psy952          187 TERLYWADAHLDYIASVDLDGKHK---HIVISGQKVPHVFALTLFEDHIYWTDW  237 (573)
Q Consensus       187 ~~~LYw~D~~~~~I~~~~~dG~~~---~~l~~~~~~~~p~~ia~~~~~lywtd~  237 (573)
                      ...|.+++....+|.++-+.|...   ++++.+. ...|..|...+..=||.-.
T Consensus       230 ~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~L-PG~PDNIR~~~~G~fWVal  282 (376)
T KOG1520|consen  230 GSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGL-PGYPDNIRRDSTGHFWVAL  282 (376)
T ss_pred             CCEEEEEeeccceeeeeEecCCccCchhhHhhcC-CCCCcceeECCCCCEEEEE
Confidence            999999999999999999998776   7777654 5689999987766666543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.03  E-value=4.9e-08  Score=99.69  Aligned_cols=222  Identities=17%  Similarity=0.215  Sum_probs=139.6

Q ss_pred             CEEEEEec-ccEEEEEcCCCceee-------cccCCcceEEEEEEc---CCCEEEEEECCC--------CeEEEEEcCCC
Q psy952           17 PWLIFSNK-YYVRNMSLDATQYSL-------VHQDLLNVVAMDFHY---KENRFYFADVAA--------KTIYRSRVGST   77 (573)
Q Consensus        17 ~~l~~s~~-~~I~~i~l~g~~~~~-------~~~~~~~~~~v~~d~---~~~~ly~~d~~~--------~~I~~~~~~g~   77 (573)
                      .-|+++.+ ..|+++..++.....       .......+.+|++++   .++.||++-...        .+|.|+.++..
T Consensus        13 G~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~   92 (331)
T PF07995_consen   13 GRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDG   92 (331)
T ss_dssp             SCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETT
T ss_pred             CcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCC
Confidence            45566654 788888866654111       123445689999998   368888876632        47888887643


Q ss_pred             -----cceEEEc------CCCCCcceeEEeecCCcEEEEeC-------------CCCeEEEEEcCCC-------------
Q psy952           78 -----EKERVIR------HDSHGLEGLAVDWVGRKLYWLDR-------------HSKQLDVAELDGT-------------  120 (573)
Q Consensus        78 -----~~~~i~~------~~~~~p~glavD~~~~~LY~td~-------------~~~~I~~~~ldg~-------------  120 (573)
                           ..++|+.      ...+.-.+|+|++ .++|||+-.             ..++|.+++++|+             
T Consensus        93 ~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~  171 (331)
T PF07995_consen   93 DGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGA  171 (331)
T ss_dssp             SCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTS
T ss_pred             ccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCc
Confidence                 2233321      1345667899997 459999842             2478999999987             


Q ss_pred             ceeEeccCCCCcceEEEeCCCceEEEEecCCc--CeEEEEeccCCC---------------------------cEEEEec
Q psy952          121 NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQ--AYIGKIGMDGSN---------------------------FTRILTH  171 (573)
Q Consensus       121 ~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~--~~I~r~~ldG~~---------------------------~~~l~~~  171 (573)
                      ..+++..++.+|.+|++||.+|.||.+|.+..  -.|.++.. |.+                           ...+.  
T Consensus       172 ~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~--  248 (331)
T PF07995_consen  172 DSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFA--  248 (331)
T ss_dssp             TTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEE--
T ss_pred             eEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCCCCCCccccccCCCCcCcccee--
Confidence            34556679999999999998899999997642  24444432 111                           00011  


Q ss_pred             CCCCCCCceEEEec------cCCeEEEEeCCCCeEEEEeCCCCcE----EEEEeCCccc-eeEEEee-eCCeEEEecCCC
Q psy952          172 EDDIAWPNALTLDY------FTERLYWADAHLDYIASVDLDGKHK----HIVISGQKVP-HVFALTL-FEDHIYWTDWNT  239 (573)
Q Consensus       172 ~~~l~~P~glaiD~------~~~~LYw~D~~~~~I~~~~~dG~~~----~~l~~~~~~~-~p~~ia~-~~~~lywtd~~~  239 (573)
                      ...-..|.|+++-.      -.+.+++++...++|.++.++....    +.++ .. .. .|.+|++ .++.||+++-.+
T Consensus       249 ~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~-~~~r~~~v~~~pDG~Lyv~~d~~  326 (331)
T PF07995_consen  249 YPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-GG-FGGRPRDVAQGPDGALYVSDDSD  326 (331)
T ss_dssp             ETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-TT-SSS-EEEEEEETTSEEEEEE-TT
T ss_pred             ecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-cc-CCCCceEEEEcCCCeEEEEECCC
Confidence            12224577888752      2578999999999999999873322    2222 22 33 7999999 467999998899


Q ss_pred             CceEE
Q psy952          240 KSINR  244 (573)
Q Consensus       240 ~~I~~  244 (573)
                      ++|+|
T Consensus       327 G~iyR  331 (331)
T PF07995_consen  327 GKIYR  331 (331)
T ss_dssp             TTEEE
T ss_pred             CeEeC
Confidence            99986

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.98  E-value=8.7e-08  Score=90.24  Aligned_cols=224  Identities=13%  Similarity=0.105  Sum_probs=155.3

Q ss_pred             eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952           38 SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL  117 (573)
Q Consensus        38 ~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l  117 (573)
                      ..++.....|..|+-++ ++.||+++...+.|-+++...+..+++-...-..|.+|.+++ .+.++++|.+. .|.+++.
T Consensus        55 ~fpvp~G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dp  131 (353)
T COG4257          55 EFPVPNGSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDP  131 (353)
T ss_pred             eeccCCCCCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecC
Confidence            44555666788888884 789999999999999999987776665433337999999997 67899999877 7888887


Q ss_pred             CCCceeEec----cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952          118 DGTNRKTLK----TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       118 dg~~~~~l~----~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~  193 (573)
                      .....+.+-    ..-.+-...++|+ .|.|+||..  .+.-.|.+..-...+++-  ...-..|+||++- .++.||++
T Consensus       132 kt~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q--~G~yGrLdPa~~~i~vfp--aPqG~gpyGi~at-pdGsvwya  205 (353)
T COG4257         132 KTLEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQ--IGAYGRLDPARNVISVFP--APQGGGPYGICAT-PDGSVWYA  205 (353)
T ss_pred             cccceEEeecccccCCCcccceeeCC-CccEEEeec--cccceecCcccCceeeec--cCCCCCCcceEEC-CCCcEEEE
Confidence            554444432    1233456778998 789999874  333445555544555554  4456789999998 57899999


Q ss_pred             eCCCCeEEEEeCCCCcEEEEEeCC-ccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceE-EEcccCCCceeeeeee
Q psy952          194 DAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYR-VLRNTTHRPYDIHVYH  270 (573)
Q Consensus       194 D~~~~~I~~~~~dG~~~~~l~~~~-~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~-~l~~~~~~p~~i~v~~  270 (573)
                      ....+.|.+++.-....+++..-. .......|-.+ .++++.|+|.++++++++..+..-.. -|......|+.+.|..
T Consensus       206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~  285 (353)
T COG4257         206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR  285 (353)
T ss_pred             eccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc
Confidence            988899999987544555444311 01222344443 47899999999999999876655332 2333345677776654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.97  E-value=6.3e-07  Score=95.57  Aligned_cols=226  Identities=10%  Similarity=0.059  Sum_probs=150.0

Q ss_pred             cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952           26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY  103 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY  103 (573)
                      .|+.++.+|.+...+......+....|.+.+++|+|+...  ...|+.++++++..+.+.... ......++.+.++.|+
T Consensus       199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La  277 (448)
T PRK04792        199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLA  277 (448)
T ss_pred             EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEE
Confidence            6777788888766665554556678899999999887543  347999999876655443221 2234567888888898


Q ss_pred             EEeCCC--CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCce
Q psy952          104 WLDRHS--KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNA  180 (573)
Q Consensus       104 ~td~~~--~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~g  180 (573)
                      ++....  ..|+++++++...+.+..........+++|...+|+++.. +....|+++++++...+.+.  .. .....+
T Consensus       278 ~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt--~~-g~~~~~  354 (448)
T PRK04792        278 LVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT--FE-GEQNLG  354 (448)
T ss_pred             EEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe--cC-CCCCcC
Confidence            864333  3699999988776666544344566788998888877753 23568999999876655554  22 222345


Q ss_pred             EEEeccCCeEEEEeCCCC--eEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCC--ceEEEeccCCcceEEE
Q psy952          181 LTLDYFTERLYWADAHLD--YIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTK--SINRADKFNGRDYRVL  256 (573)
Q Consensus       181 laiD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~--~I~~~~~~~g~~~~~l  256 (573)
                      .++.++++.||++....+  .|+.+++++...+.+........| +++..+..|+++....+  .|+.++ .+|...+.+
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~-~~G~~~~~l  432 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVS-IDGRFKARL  432 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEE-CCCCceEEC
Confidence            688888999998865433  788899988877665543211233 45556777877654333  366666 467666655


Q ss_pred             c
Q psy952          257 R  257 (573)
Q Consensus       257 ~  257 (573)
                      .
T Consensus       433 ~  433 (448)
T PRK04792        433 P  433 (448)
T ss_pred             c
Confidence            3

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.94  E-value=1.7e-06  Score=84.75  Aligned_cols=227  Identities=13%  Similarity=0.125  Sum_probs=152.8

Q ss_pred             cccEEEEEcCCC--c--eeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCC-cceEEEcC---CCCCccee
Q psy952           24 KYYVRNMSLDAT--Q--YSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGST-EKERVIRH---DSHGLEGL   93 (573)
Q Consensus        24 ~~~I~~i~l~g~--~--~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~-~~~~i~~~---~~~~p~gl   93 (573)
                      ...|+++.+++.  .  ...++..+.+|.-|++++..+.||.....  .+.|..+.+|.. ..-+++..   ....|.-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            457888888733  2  23345678889999999999999999876  677777777652 22223321   12456899


Q ss_pred             EEeecCCcEEEEeCCCCeEEEEEc--CCCceeEe--ccC----------CCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952           94 AVDWVGRKLYWLDRHSKQLDVAEL--DGTNRKTL--KTA----------IQDPRGITLHPGIGYVYFSSWNLQAYIGKIG  159 (573)
Q Consensus        94 avD~~~~~LY~td~~~~~I~~~~l--dg~~~~~l--~~~----------~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~  159 (573)
                      ++|..++.||.++...+.|.|..+  +|....++  +..          -.++...-++|.+.+|+..|-+ ..+|...+
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~Dri~~y~  173 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-TDRIFLYD  173 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-CceEEEEE
Confidence            999999999999999999998876  45444332  111          1236788899999999999987 44565555


Q ss_pred             cc-CCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC--cEEEEEe-----CCc--cceeEEEee--
Q psy952          160 MD-GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGK--HKHIVIS-----GQK--VPHVFALTL--  227 (573)
Q Consensus       160 ld-G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~--~~~~l~~-----~~~--~~~p~~ia~--  227 (573)
                      ++ |.....-......-..|+-|++.+..+..|++..-+++|....+++.  ..+.+-.     ...  .....+|.+  
T Consensus       174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            54 43321111012445678999999999999999999999999888873  2222221     110  123344544  


Q ss_pred             eCCeEEEecCCCCceE--EEeccCCc
Q psy952          228 FEDHIYWTDWNTKSIN--RADKFNGR  251 (573)
Q Consensus       228 ~~~~lywtd~~~~~I~--~~~~~~g~  251 (573)
                      ++.+||.++.+.++|.  +++..+|.
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~  279 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGK  279 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCE
Confidence            6788999999988764  55555554

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.93  E-value=4.3e-07  Score=94.82  Aligned_cols=158  Identities=17%  Similarity=0.229  Sum_probs=112.7

Q ss_pred             CceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE------Ec-CCCCCcceeEEeec------CCc
Q psy952           35 TQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV------IR-HDSHGLEGLAVDWV------GRK  101 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i------~~-~~~~~p~glavD~~------~~~  101 (573)
                      -..+.++.++..|.+|+|.+ +++||++....++|++++.++...+.+      +. .+...+.|||+++.      ++.
T Consensus        20 f~~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~   98 (454)
T TIGR03606        20 FDKKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPY   98 (454)
T ss_pred             cEEEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcE
Confidence            34566778899999999987 679999998788999998765433222      11 24567899999853      467


Q ss_pred             EEEEeC---------CCCeEEEEEcCCC-----ceeEeccCC-----CCcceEEEeCCCceEEEEecCC-----------
Q psy952          102 LYWLDR---------HSKQLDVAELDGT-----NRKTLKTAI-----QDPRGITLHPGIGYVYFSSWNL-----------  151 (573)
Q Consensus       102 LY~td~---------~~~~I~~~~ldg~-----~~~~l~~~~-----~~P~~Iavdp~~g~LYwtd~~~-----------  151 (573)
                      ||++-+         ...+|.++.++..     ..++|+..+     ..-..|+++| .|+||++-...           
T Consensus        99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~  177 (454)
T TIGR03606        99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLP  177 (454)
T ss_pred             EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCc
Confidence            999742         2457888887632     224454332     2367899999 67899974211           


Q ss_pred             --------------------cCeEEEEeccCCC----------cEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952          152 --------------------QAYIGKIGMDGSN----------FTRILTHEDDIAWPNALTLDYFTERLYWADAHL  197 (573)
Q Consensus       152 --------------------~~~I~r~~ldG~~----------~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~  197 (573)
                                          .++|.|++.||+.          +..|.  .-++..|.||++|+ +++||.+|.+.
T Consensus       178 ~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIy--A~G~RNp~Gla~dp-~G~Lw~~e~Gp  250 (454)
T TIGR03606       178 NQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIF--TYGHRNPQGLAFTP-DGTLYASEQGP  250 (454)
T ss_pred             chhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEE--EEeccccceeEECC-CCCEEEEecCC
Confidence                                2379999999973          23455  57899999999998 79999998764

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4499|consensus

Probab=98.88  E-value=2e-07  Score=85.80  Aligned_cols=193  Identities=14%  Similarity=0.204  Sum_probs=120.8

Q ss_pred             EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-E---------EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952           48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-R---------VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL  117 (573)
Q Consensus        48 ~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~---------i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l  117 (573)
                      .|..|+..++.|||+|+..+.|.|.+....... .         ++..-...|...++-          -+ .+....++
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~----------~G-~kf~i~nw   86 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVG----------CG-SKFVIVNW   86 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEe----------ec-ceEEEEEc
Confidence            577899999999999998877777665432211 1         111112334433332          11 23444555


Q ss_pred             CCCceeEec-cC---------CCCcceEEEeCCCceEEEEecCC--------cCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952          118 DGTNRKTLK-TA---------IQDPRGITLHPGIGYVYFSSWNL--------QAYIGKIGMDGSNFTRILTHEDDIAWPN  179 (573)
Q Consensus       118 dg~~~~~l~-~~---------~~~P~~Iavdp~~g~LYwtd~~~--------~~~I~r~~ldG~~~~~l~~~~~~l~~P~  179 (573)
                      +|.....++ ..         -.+-+.--|||..++ |.-....        ...+ +..+.|...+.+.   ..+..||
T Consensus        87 d~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~L-y~~~~~h~v~~i~---~~v~IsN  161 (310)
T KOG4499|consen   87 DGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGEL-YSWLAGHQVELIW---NCVGISN  161 (310)
T ss_pred             ccccceeeeeeeccccCchHHhcccccCccCCCCce-eeeeeccccccccccccEE-EEeccCCCceeee---hhccCCc
Confidence            554322211 11         112445567884444 5432221        1233 3344444455554   6788899


Q ss_pred             eEEEeccCCeEEEEeCCCCeEEEEeCC--C---CcEEEEEeCC-----ccceeEEEeee-CCeEEEecCCCCceEEEecc
Q psy952          180 ALTLDYFTERLYWADAHLDYIASVDLD--G---KHKHIVISGQ-----KVPHVFALTLF-EDHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~~~~I~~~~~d--G---~~~~~l~~~~-----~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~  248 (573)
                      ||+.|.+.+++|++|+.+-.|...++|  +   +++++|+.-.     ...-|.|++++ ++.||++-|..++|+++++.
T Consensus       162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~  241 (310)
T KOG4499|consen  162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT  241 (310)
T ss_pred             cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence            999999999999999999999777755  2   5666666411     13568999995 68999999999999999999


Q ss_pred             CCcceEEE
Q psy952          249 NGRDYRVL  256 (573)
Q Consensus       249 ~g~~~~~l  256 (573)
                      +|+....+
T Consensus       242 tGK~L~ei  249 (310)
T KOG4499|consen  242 TGKILLEI  249 (310)
T ss_pred             CCcEEEEE
Confidence            99866554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=98.87  E-value=6.4e-07  Score=84.48  Aligned_cols=218  Identities=12%  Similarity=0.078  Sum_probs=145.9

Q ss_pred             ccEEEEEcCCC-ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC---CCCCcceeEEeecCC
Q psy952           25 YYVRNMSLDAT-QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH---DSHGLEGLAVDWVGR  100 (573)
Q Consensus        25 ~~I~~i~l~g~-~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~---~~~~p~glavD~~~~  100 (573)
                      +.|-+++.... ..+.++.....|.+|.+++ ++..|++|... .|.|++.+....+.+-..   .-...+...||. .+
T Consensus        83 gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~-~G  159 (353)
T COG4257          83 GAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDP-WG  159 (353)
T ss_pred             ccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCC-Cc
Confidence            56777777544 3445566667799999996 78899999877 899998866555444221   224556678885 67


Q ss_pred             cEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCC-CCC
Q psy952          101 KLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDI-AWP  178 (573)
Q Consensus       101 ~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l-~~P  178 (573)
                      +|+||.+ .+---+++.-....+++- .....|+||.+.| +|.+|++... ...|.|++.-....+++.. .+.+ ..-
T Consensus       160 ~lWFt~q-~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atp-dGsvwyasla-gnaiaridp~~~~aev~p~-P~~~~~gs  235 (353)
T COG4257         160 NLWFTGQ-IGAYGRLDPARNVISVFPAPQGGGPYGICATP-DGSVWYASLA-GNAIARIDPFAGHAEVVPQ-PNALKAGS  235 (353)
T ss_pred             cEEEeec-cccceecCcccCceeeeccCCCCCCcceEECC-CCcEEEEecc-ccceEEcccccCCcceecC-CCcccccc
Confidence            8988875 333335555444545544 3445699999999 7889998753 4567777654334333331 1221 122


Q ss_pred             ceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEE-EEeCCccceeEEEeeeC-CeEEEecCCCCceEEEeccCCc
Q psy952          179 NALTLDYFTERLYWADAHLDYIASVDLDGKHKHI-VISGQKVPHVFALTLFE-DHIYWTDWNTKSINRADKFNGR  251 (573)
Q Consensus       179 ~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~-l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~~~~~~~g~  251 (573)
                      ..|-.| .-++++.++++++.+++++..-..=.. -+.+. -.+|++|-|+. ++++.+|+..+.|.|++..+-+
T Consensus       236 Rriwsd-pig~~wittwg~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD~~grVW~sea~agai~rfdpeta~  308 (353)
T COG4257         236 RRIWSD-PIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVDRHGRVWLSEADAGAIGRFDPETAR  308 (353)
T ss_pred             cccccC-ccCcEEEeccCCceeeEeCcccccceeeeCCCC-CCCcceeeeccCCcEEeeccccCceeecCcccce
Confidence            345556 468899999999999999987544222 12233 57899999975 6677779999999999876643

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.87  E-value=1e-06  Score=87.80  Aligned_cols=186  Identities=18%  Similarity=0.230  Sum_probs=120.6

Q ss_pred             ceEEEEEEcCCCEEEEEECCC------------CeEEEEEcCCCcc-eEE-EcCC----CCCcceeEEeecC-----CcE
Q psy952           46 NVVAMDFHYKENRFYFADVAA------------KTIYRSRVGSTEK-ERV-IRHD----SHGLEGLAVDWVG-----RKL  102 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~------------~~I~~~~~~g~~~-~~i-~~~~----~~~p~glavD~~~-----~~L  102 (573)
                      ++.++.+| ..++||+.|.+.            .+|..+++..... .++ +...    -.....|+||...     +.+
T Consensus         2 sV~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a   80 (287)
T PF03022_consen    2 SVQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA   80 (287)
T ss_dssp             -EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred             cccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence            35677888 478888888653            3788888875432 222 2212    2456779999754     479


Q ss_pred             EEEeCCCCeEEEEEcCC-CceeEeccC-------------------CCCcceEEEeC---CCceEEEEecCCcCeEEEEe
Q psy952          103 YWLDRHSKQLDVAELDG-TNRKTLKTA-------------------IQDPRGITLHP---GIGYVYFSSWNLQAYIGKIG  159 (573)
Q Consensus       103 Y~td~~~~~I~~~~ldg-~~~~~l~~~-------------------~~~P~~Iavdp---~~g~LYwtd~~~~~~I~r~~  159 (573)
                      |+||.+...|.|+++.. ...+++...                   .....|||+.|   ..++|||.-.. ..+++++.
T Consensus        81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-s~~ly~v~  159 (287)
T PF03022_consen   81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-SRKLYRVP  159 (287)
T ss_dssp             EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEE
T ss_pred             EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-CCcEEEEE
Confidence            99999999999999864 444444310                   01146788876   45689999743 45677776


Q ss_pred             cc----CC---------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC----CcEEEEEeCCc-cce
Q psy952          160 MD----GS---------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG----KHKHIVISGQK-VPH  221 (573)
Q Consensus       160 ld----G~---------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG----~~~~~l~~~~~-~~~  221 (573)
                      ..    .+         ..+.+.   .......|+++|. ++.||+++...+.|.+.+.++    .+.++|+...+ +..
T Consensus       160 T~~L~~~~~~~~~~~~~~v~~lG---~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~  235 (287)
T PF03022_consen  160 TSVLRDPSLSDAQALASQVQDLG---DKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQW  235 (287)
T ss_dssp             HHHHCSTT--HHH-HHHT-EEEE---E---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSS
T ss_pred             HHHhhCccccccccccccceecc---ccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeec
Confidence            42    11         122232   2223457999995 999999999999999999998    56677777655 889


Q ss_pred             eEEEeeeC---CeEEEecC
Q psy952          222 VFALTLFE---DHIYWTDW  237 (573)
Q Consensus       222 p~~ia~~~---~~lywtd~  237 (573)
                      |.+|++..   ++||+.-.
T Consensus       236 pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  236 PDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EEEEEE-T--TS-EEEEE-
T ss_pred             cceeeeccccCceEEEEEC
Confidence            99999977   88998753

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.86  E-value=1e-06  Score=89.35  Aligned_cols=205  Identities=17%  Similarity=0.195  Sum_probs=128.6

Q ss_pred             CCEEEEEECC----CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC---------CCCeEEEEEcCCCce
Q psy952           56 ENRFYFADVA----AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR---------HSKQLDVAELDGTNR  122 (573)
Q Consensus        56 ~~~ly~~d~~----~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~---------~~~~I~~~~ldg~~~  122 (573)
                      ..++|++|..    .++|+.++.+.......+..+ ..|.++ +.+.++.||++.+         ..+.|.++++.....
T Consensus        12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~   89 (352)
T TIGR02658        12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP   89 (352)
T ss_pred             CCEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence            5678998886    378999988765544445555 589997 9999999999998         788999999875443


Q ss_pred             e-Eecc-------CCCCcceEEEeCCCceEEEEecCCcCeEEEEec------------------------------cCCC
Q psy952          123 K-TLKT-------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM------------------------------DGSN  164 (573)
Q Consensus       123 ~-~l~~-------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l------------------------------dG~~  164 (573)
                      . .|..       ....|..++|+|..++||++++.....+.++++                              ||+.
T Consensus        90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~  169 (352)
T TIGR02658        90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL  169 (352)
T ss_pred             EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence            3 3321       244566999999999999998652333333332                              4443


Q ss_pred             cE---------EEEecCCCC---------CCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe------CCc--
Q psy952          165 FT---------RILTHEDDI---------AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS------GQK--  218 (573)
Q Consensus       165 ~~---------~l~~~~~~l---------~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~------~~~--  218 (573)
                      .+         ...  ...+         ..|   .+.+.++++||.... +.|+.+++.+........      ...  
T Consensus       170 ~~v~~d~~g~~~~~--~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~  243 (352)
T TIGR02658       170 AKVGYGTKGNPKIK--PTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD  243 (352)
T ss_pred             EEEEecCCCceEEe--eeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccc
Confidence            33         111  0111         233   223335666666666 999999987654332211      100  


Q ss_pred             cceeEE---Eee--eCCeEEEe-cCC--------CCceEEEeccCCcceEEEcccCCCceeeeee
Q psy952          219 VPHVFA---LTL--FEDHIYWT-DWN--------TKSINRADKFNGRDYRVLRNTTHRPYDIHVY  269 (573)
Q Consensus       219 ~~~p~~---ia~--~~~~lywt-d~~--------~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~  269 (573)
                      --+|.|   +++  .+++||++ ...        .+.|..++..+++....+..+ ..|.+|++-
T Consensus       244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS  307 (352)
T TIGR02658       244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVS  307 (352)
T ss_pred             ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEEC
Confidence            012333   555  57899994 322        257999998888777666543 366666653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.86  E-value=1.5e-09  Score=69.70  Aligned_cols=32  Identities=50%  Similarity=1.217  Sum_probs=29.7

Q ss_pred             cCCCceeeCCCCceecCCcCcCCCCCCCCCCCC
Q psy952          525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE  557 (573)
Q Consensus       525 C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe  557 (573)
                      |...+|+|.++ .|||..|+|||..||+|+|||
T Consensus         2 C~~~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNG-RCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCC-CEECchhhCCCcCcCcCCCCC
Confidence            55679999988 899999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.86  E-value=5.4e-09  Score=71.33  Aligned_cols=42  Identities=29%  Similarity=0.763  Sum_probs=38.3

Q ss_pred             ceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEec
Q psy952          142 GYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY  185 (573)
Q Consensus       142 g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~  185 (573)
                      ++|||||++..++|++++|||+.+++++  ...+..|.|||||+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi--~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVI--SDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEE--ESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEE--ECCCCCcCEEEECC
Confidence            5899999986669999999999999999  78899999999984

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.84  E-value=8.4e-07  Score=85.72  Aligned_cols=176  Identities=16%  Similarity=0.244  Sum_probs=103.8

Q ss_pred             cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC--Cc--ce---EE--Ec--CCCCCcc
Q psy952           24 KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS--TE--KE---RV--IR--HDSHGLE   91 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g--~~--~~---~i--~~--~~~~~p~   91 (573)
                      ...|+.++++|.... +.+.+++.+.||+|- .++++.+++-..+.|+.+.++.  ..  ..   .+  -.  .+....+
T Consensus        43 ~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~E  121 (248)
T PF06977_consen   43 PGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFE  121 (248)
T ss_dssp             TTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--E
T ss_pred             CCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceE
Confidence            357888888876543 446677889999996 5677777887788898888733  21  11   11  11  1234589


Q ss_pred             eeEEeecCCcEEEEeCCC-CeEEEEEc--CCCceeEec--------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952           92 GLAVDWVGRKLYWLDRHS-KQLDVAEL--DGTNRKTLK--------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM  160 (573)
Q Consensus        92 glavD~~~~~LY~td~~~-~~I~~~~l--dg~~~~~l~--------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l  160 (573)
                      |||+|..+++||++.... ..|+.++.  .+....+..        ..+.+|.+|++||.++.||+... ....|...+.
T Consensus       122 Gla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~-es~~l~~~d~  200 (248)
T PF06977_consen  122 GLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSD-ESRLLLELDR  200 (248)
T ss_dssp             EEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEET-TTTEEEEE-T
T ss_pred             EEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEEC-CCCeEEEECC
Confidence            999999999999986433 35666665  222222211        14567999999999999999974 4778999999


Q ss_pred             cCCCcEEEEecC------CCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952          161 DGSNFTRILTHE------DDIAWPNALTLDYFTERLYWADAHLDYIASV  203 (573)
Q Consensus       161 dG~~~~~l~~~~------~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~  203 (573)
                      +|.....+.-..      ..+..|.|||+|+ +++||++.- -+..+++
T Consensus       201 ~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE-pNlfy~f  247 (248)
T PF06977_consen  201 QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE-PNLFYRF  247 (248)
T ss_dssp             T--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET-TTEEEEE
T ss_pred             CCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC-CceEEEe
Confidence            998655544101      3467899999995 789999874 4455554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=2.6e-06  Score=90.75  Aligned_cols=227  Identities=12%  Similarity=0.122  Sum_probs=147.6

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ..|+.++++|.+...+......+..++|.+.+++|+++...  ...|++++++++..+.+.... .....+++.+.+++|
T Consensus       184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~~l  262 (433)
T PRK04922        184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGRRL  262 (433)
T ss_pred             EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCCCEE
Confidence            35777888887666555444456788999999999988654  347999999876655443222 233456788888888


Q ss_pred             EEEeC--CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEe-cCCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952          103 YWLDR--HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS-WNLQAYIGKIGMDGSNFTRILTHEDDIAWPN  179 (573)
Q Consensus       103 Y~td~--~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~  179 (573)
                      +++-.  +...|+++++.+...+.+..........+++|...+|+++. ......|+++++++...+.+.  ... ....
T Consensus       263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt--~~g-~~~~  339 (433)
T PRK04922        263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT--FQG-NYNA  339 (433)
T ss_pred             EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee--cCC-CCcc
Confidence            87643  33479999998877665554333345678899877777764 223467999998876655554  222 2344


Q ss_pred             eEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecC--CCCceEEEeccCCcceEE
Q psy952          180 ALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW--NTKSINRADKFNGRDYRV  255 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~--~~~~I~~~~~~~g~~~~~  255 (573)
                      .+++.++++.|+++....  ..|+.+++++...+.+..+.....| ..+.++..|+++..  ....|+.++. +|...+.
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~  417 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESP-SFAPNGSMVLYATREGGRGVLAAVST-DGRVRQR  417 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence            678888899999876433  3689999987776655543211222 34445667776633  2345777764 5555554


Q ss_pred             Ec
Q psy952          256 LR  257 (573)
Q Consensus       256 l~  257 (573)
                      +.
T Consensus       418 l~  419 (433)
T PRK04922        418 LV  419 (433)
T ss_pred             cc
Confidence            43

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=6.2e-06  Score=86.87  Aligned_cols=224  Identities=9%  Similarity=0.031  Sum_probs=146.7

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCE-EEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCc
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENR-FYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK  101 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~-ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~  101 (573)
                      ..|+.++.+|.+...+.... ......|.+..++ +|++...  ...|+++++.++..+.+.... ......++.+.+++
T Consensus       169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-g~~~~~~~SPDG~~  246 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-GMLVVSDVSKDGSK  246 (419)
T ss_pred             ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-CcEEeeEECCCCCE
Confidence            57889999998776555543 5667889988875 7776554  468999999887776665322 22223445566778


Q ss_pred             EEEEeC--CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCC
Q psy952          102 LYWLDR--HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWP  178 (573)
Q Consensus       102 LY~td~--~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P  178 (573)
                      |+++..  +...|+++++++...+.|......-......|....|||+.. ...+.|++++++|...+.+.  ...... 
T Consensus       247 la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~~g~~~-  323 (419)
T PRK04043        247 LLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--FHGKNN-  323 (419)
T ss_pred             EEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--cCCCcC-
Confidence            887654  345899999988776655432211223368887778888763 33568999999988776655  232222 


Q ss_pred             ceEEEeccCCeEEEEeCCC--------CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCC--CCceEEEecc
Q psy952          179 NALTLDYFTERLYWADAHL--------DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWN--TKSINRADKF  248 (573)
Q Consensus       179 ~glaiD~~~~~LYw~D~~~--------~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~--~~~I~~~~~~  248 (573)
                        ..+++++++|.++-...        ..|+.+++++...+.|.... ....-..+.++..|+++...  ...|..++ .
T Consensus       324 --~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~-l  399 (419)
T PRK04043        324 --SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIR-L  399 (419)
T ss_pred             --ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEe-c
Confidence              37888899887775432        47999999988877776543 22223355567777776432  23466776 4


Q ss_pred             CCcceEEEc
Q psy952          249 NGRDYRVLR  257 (573)
Q Consensus       249 ~g~~~~~l~  257 (573)
                      +|.....+.
T Consensus       400 ~g~~~~~l~  408 (419)
T PRK04043        400 NYNKSFLFP  408 (419)
T ss_pred             CCCeeEEee
Confidence            666555443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.79  E-value=7.1e-06  Score=86.95  Aligned_cols=226  Identities=14%  Similarity=0.094  Sum_probs=146.1

Q ss_pred             cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC--CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952           26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA--KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY  103 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY  103 (573)
                      .|+.++.+|.....+..........+|.+.+++|+|+....  ..|+.+++.++....+.... .....+++.+.++.||
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-~~~~~~~~spDg~~l~  249 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-GMNGAPAFSPDGSKLA  249 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEEE
Confidence            58888888776666554444467788999999999987543  57999998766544443221 2345577877778898


Q ss_pred             EEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCce
Q psy952          104 WLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNA  180 (573)
Q Consensus       104 ~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~g  180 (573)
                      ++...  ...|++.++.+...+.+..........++.|...+|+++.. +....|+++++++...+.+.   ........
T Consensus       250 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~---~~~~~~~~  326 (417)
T TIGR02800       250 VSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT---FRGGYNAS  326 (417)
T ss_pred             EEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee---cCCCCccC
Confidence            87543  34699999987766555533222345577887777877643 33458999999887665554   22334557


Q ss_pred             EEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCC-ceEEEeccCCcceEEE
Q psy952          181 LTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTK-SINRADKFNGRDYRVL  256 (573)
Q Consensus       181 laiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~-~I~~~~~~~g~~~~~l  256 (573)
                      +++.+.+.+|+++....  .+|..+++++...+.+........| .++.++..|+++....+ .+..+...+|.....+
T Consensus       327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p-~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~  404 (417)
T TIGR02800       327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESP-SFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL  404 (417)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCc-eECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence            78888888999987643  3789999988766665543212222 34456777887755432 3333444566555444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.79  E-value=4.4e-06  Score=89.03  Aligned_cols=226  Identities=15%  Similarity=0.083  Sum_probs=148.2

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ..|+.++.+|.+...+......+..+.|.+.+++|+++...  ...|+.+++.++..+.+.... ....+.++.+.+++|
T Consensus       182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~l  260 (435)
T PRK05137        182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-GMTFAPRFSPDGRKV  260 (435)
T ss_pred             eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-CcccCcEECCCCCEE
Confidence            37888888888776665555567889999988888887543  468999999877665443222 234566777778888


Q ss_pred             EEEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEe-cCCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952          103 YWLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS-WNLQAYIGKIGMDGSNFTRILTHEDDIAWPN  179 (573)
Q Consensus       103 Y~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~  179 (573)
                      +++-..  ...|+++++++...+.|..........++.|...+|+++. ......|++++++|...+.+.  ... ..-.
T Consensus       261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt--~~~-~~~~  337 (435)
T PRK05137        261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS--FGG-GRYS  337 (435)
T ss_pred             EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee--cCC-Cccc
Confidence            776533  3469999998877666654433455678888777777664 333568999999988766665  221 1223


Q ss_pred             eEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCC--C---CceEEEeccCCcc
Q psy952          180 ALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWN--T---KSINRADKFNGRD  252 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~--~---~~I~~~~~~~g~~  252 (573)
                      ..++.+++++|+++....  ..|..++++|...+.+..+. .......+-++..||++-..  .   ..|+.++. +|..
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl-~g~~  415 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL-TGRN  415 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC-CCCc
Confidence            467788889998876433  47899999887776654432 11112233356677775332  1   36888875 4444


Q ss_pred             eEEE
Q psy952          253 YRVL  256 (573)
Q Consensus       253 ~~~l  256 (573)
                      .+.+
T Consensus       416 ~~~l  419 (435)
T PRK05137        416 EREV  419 (435)
T ss_pred             eEEc
Confidence            4444

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.79  E-value=1.3e-06  Score=83.69  Aligned_cols=200  Identities=13%  Similarity=0.164  Sum_probs=141.6

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEE-EeCCCCeEEEEEcCCCce
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYW-LDRHSKQLDVAELDGTNR  122 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~-td~~~~~I~~~~ldg~~~  122 (573)
                      ..++.+|+|++.++.||-+-.....|..+.++|....++-..+++.|++|++  ++++.|+ +|...++++.+.++-...
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd~~t~  162 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFTVDADTT  162 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEEEcCCcc
Confidence            3458899999999999999877789999999998888887788999999987  6777777 566677888877764422


Q ss_pred             eE--------eccC---CCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe--cCCC----CCCCceEEEec
Q psy952          123 KT--------LKTA---IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT--HEDD----IAWPNALTLDY  185 (573)
Q Consensus       123 ~~--------l~~~---~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~--~~~~----l~~P~glaiD~  185 (573)
                      ..        |...   -..-.|||-||..+.||++--.....|+...+.-....+-+.  ....    +..-+|+.+|+
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            11        1111   112679999999999999976556678777754322111110  0001    23347999999


Q ss_pred             cCCeEEEEeCCCCeEEEEeCCCCcEEEEEe--C-----CccceeEEEeee-CCeEEEecCCCCceEEEe
Q psy952          186 FTERLYWADAHLDYIASVDLDGKHKHIVIS--G-----QKVPHVFALTLF-EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       186 ~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~--~-----~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~  246 (573)
                      .++.|++-....+.+..++.+|..+..+.-  +     ..+++|-|||++ ++.||++- ..+..+++.
T Consensus       243 ~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS-EPnlfy~F~  310 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS-EPNLFYRFT  310 (316)
T ss_pred             CCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe-cCCcceecc
Confidence            999999998888999999999987655532  1     127889999996 56788763 233444443

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=7.1e-06  Score=87.12  Aligned_cols=227  Identities=12%  Similarity=0.094  Sum_probs=149.4

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEEC--CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV--AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ..|+.++.+|.+...+.........++|.+.+++|.++..  ....|+.++++++..+.+.... .....+++.+.+++|
T Consensus       179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~L  257 (429)
T PRK03629        179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSKL  257 (429)
T ss_pred             eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCEE
Confidence            3688899998876665555556778999999988887643  2457999999876655444221 234457888888899


Q ss_pred             EEEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEE-ecCCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952          103 YWLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFS-SWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN  179 (573)
Q Consensus       103 Y~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwt-d~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~  179 (573)
                      +++...  ...|+++++++...+.+..........++.|....|+++ +.+....|+++++++...+.+.   .......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt---~~~~~~~  334 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT---WEGSQNQ  334 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee---cCCCCcc
Confidence            987543  336999999887766665444456778899987777555 4333568999999987665554   2222334


Q ss_pred             eEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCC-C-ceEEEeccCCcceEE
Q psy952          180 ALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT-K-SINRADKFNGRDYRV  255 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~-~-~I~~~~~~~g~~~~~  255 (573)
                      ..++.+++++|+++....  ..|+.+++++...+.|.... ......++-++..|+++.... . .|+.++ .+|...+.
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~-~~G~~~~~  412 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF-LDETPSIAPNGTMVIYSSSQGMGSVLNLVS-TDGRFKAR  412 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC-CCCCceECCCCCEEEEEEcCCCceEEEEEE-CCCCCeEE
Confidence            677888888888875433  46888999887766655321 112223445666677664332 2 345555 46766665


Q ss_pred             Ec
Q psy952          256 LR  257 (573)
Q Consensus       256 l~  257 (573)
                      |.
T Consensus       413 l~  414 (429)
T PRK03629        413 LP  414 (429)
T ss_pred             Cc
Confidence            54

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.78  E-value=9.1e-06  Score=86.54  Aligned_cols=225  Identities=12%  Similarity=0.084  Sum_probs=145.9

Q ss_pred             cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952           26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY  103 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY  103 (573)
                      .|+.++.+|.+...+......+..+.|.+.+++|+++...  ...|++++++++..+.+.... ......++.+.+++|+
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g~~~~~~~SpDG~~la  258 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-GLNGAPAWSPDGSKLA  258 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-CCcCCeEECCCCCEEE
Confidence            4777788887765555554556788999999999776543  347999999877665543222 2333567777788888


Q ss_pred             EEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCce
Q psy952          104 WLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNA  180 (573)
Q Consensus       104 ~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~g  180 (573)
                      ++-..  ...|+++++++...+.|..........+++|....||++.. .....|+++++++...+.+.  ... .....
T Consensus       259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt--~~~-~~~~~  335 (430)
T PRK00178        259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT--FVG-NYNAR  335 (430)
T ss_pred             EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCC-CCccc
Confidence            76533  34799999988776655543333455678887777877642 23568999998876655554  121 22234


Q ss_pred             EEEeccCCeEEEEeCCCC--eEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCC--CceEEEeccCCcceEEE
Q psy952          181 LTLDYFTERLYWADAHLD--YIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADKFNGRDYRVL  256 (573)
Q Consensus       181 laiD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~~~g~~~~~l  256 (573)
                      .++.++++.|+++....+  .|+.+++++...+.+........| .++..+..|+++....  ..|+.++. +|...+.+
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l  413 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESP-SVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLPL  413 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence            577888999998865433  688999988777666543211233 4555677888875433  45676664 55554444

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.75  E-value=1.2e-05  Score=85.40  Aligned_cols=227  Identities=11%  Similarity=0.080  Sum_probs=144.3

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ..|+.++.+|.+...+......+..++|.+.+++|+++...  ...|+.+++.++....+.... ......++.+.+++|
T Consensus       176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~l  254 (427)
T PRK02889        176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGRTL  254 (427)
T ss_pred             cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEE
Confidence            46888888887765554444456688999989898887643  347999999876655443222 234567788888889


Q ss_pred             EEEeC--CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEe-cCCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952          103 YWLDR--HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS-WNLQAYIGKIGMDGSNFTRILTHEDDIAWPN  179 (573)
Q Consensus       103 Y~td~--~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~  179 (573)
                      +++-.  +...|+++++++...+.|..........+++|...+|+++. .+....|+++++++...+.+.  ... ....
T Consensus       255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt--~~g-~~~~  331 (427)
T PRK02889        255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT--FTG-SYNT  331 (427)
T ss_pred             EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe--cCC-CCcC
Confidence            87643  33478899988776665544333345567899877777664 233568999998876655544  222 2223


Q ss_pred             eEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEec-CC-CCceEEEeccCCcceEE
Q psy952          180 ALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTD-WN-TKSINRADKFNGRDYRV  255 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd-~~-~~~I~~~~~~~g~~~~~  255 (573)
                      ..++.+++++|+++....  ..|+.+++++...+.+.... ....-..+-++..||++- .. ...|+.++. +|...+.
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~  409 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQR  409 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEE
Confidence            567888889998876443  36889998877766655432 121123344566666653 33 233666664 6665555


Q ss_pred             Ec
Q psy952          256 LR  257 (573)
Q Consensus       256 l~  257 (573)
                      +.
T Consensus       410 l~  411 (427)
T PRK02889        410 LS  411 (427)
T ss_pred             ee
Confidence            53

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.72  E-value=7.9e-06  Score=84.54  Aligned_cols=247  Identities=11%  Similarity=0.064  Sum_probs=140.3

Q ss_pred             CEEEEEec-ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-C------C
Q psy952           17 PWLIFSNK-YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-S------H   88 (573)
Q Consensus        17 ~~l~~s~~-~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-~------~   88 (573)
                      .+++++++ ..|.+|++...+....+.....+.++++.+.+++||+++...+.+..++.........+..+ +      .
T Consensus        49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~  128 (369)
T PF02239_consen   49 RYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPES  128 (369)
T ss_dssp             SEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS--
T ss_pred             CEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCC
Confidence            46777764 68999999877654445556779999999999999999999999999987664433333221 1      2


Q ss_pred             CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce--eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR--KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~--~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      ++.+|...+.....+++-...++|++++......  ...+.....|.+..+||..+++|.+... ..+|..+++......
T Consensus       129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-sn~i~viD~~~~k~v  207 (369)
T PF02239_consen  129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-SNKIAVIDTKTGKLV  207 (369)
T ss_dssp             -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-GTEEEEEETTTTEEE
T ss_pred             CceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc-cceeEEEeeccceEE
Confidence            3456655544444455567789999999765322  2233455679999999988888886432 223333333221111


Q ss_pred             E------------------------------------EEecCCC-----------------CCCCceEEEeccCCeEEEE
Q psy952          167 R------------------------------------ILTHEDD-----------------IAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       167 ~------------------------------------l~~~~~~-----------------l~~P~glaiD~~~~~LYw~  193 (573)
                      .                                    ++. ...                 ...|..+...|.+.+||+.
T Consensus       208 ~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig-~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd  286 (369)
T PF02239_consen  208 ALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG-TDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD  286 (369)
T ss_dssp             EEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE---TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred             EEeeccccccccccccccCCCcceEEeeccccceeccccc-CCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence            1                                    111 000                 1123445666666666665


Q ss_pred             ---eCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCC-ceEEEeccCCcceEEEcccCCCceeee
Q psy952          194 ---DAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTK-SINRADKFNGRDYRVLRNTTHRPYDIH  267 (573)
Q Consensus       194 ---D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~-~I~~~~~~~g~~~~~l~~~~~~p~~i~  267 (573)
                         ....+.|..++..-.....-+....-..+..+.+  ++.++|++.|..+ +|..++..+.+....+.  ...|.|+-
T Consensus       287 ~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G~f  364 (369)
T PF02239_consen  287 TFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP--VPTPTGKF  364 (369)
T ss_dssp             -TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE----SEEEEE
T ss_pred             ccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE--eeCCCeEe
Confidence               3445678888876553211111100112556665  5778999999998 99999988888877776  66788754

...

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.70  E-value=4.8e-08  Score=66.63  Aligned_cols=41  Identities=32%  Similarity=0.663  Sum_probs=39.1

Q ss_pred             CEEEEEECCCC-eEEEEEcCCCcceEEEcCCCCCcceeEEee
Q psy952           57 NRFYFADVAAK-TIYRSRVGSTEKERVIRHDSHGLEGLAVDW   97 (573)
Q Consensus        57 ~~ly~~d~~~~-~I~~~~~~g~~~~~i~~~~~~~p~glavD~   97 (573)
                      ++|||+|.... .|.+++++|+..++++...+..|.||||||
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            58999999999 999999999999999999999999999996

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.70  E-value=8.2e-09  Score=67.89  Aligned_cols=35  Identities=57%  Similarity=1.142  Sum_probs=32.0

Q ss_pred             CCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       409 ~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      .|..+ +|+|.++.||+..|+||+..||.|+|||.+
T Consensus         2 ~C~~~-~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~   36 (37)
T PF00057_consen    2 TCPPG-EFRCGNGQCIPKSWVCDGIPDCPDGSDEQN   36 (37)
T ss_dssp             SSSTT-EEEETTSSEEEGGGTTSSSCSSSSSTTTSS
T ss_pred             cCcCC-eeEcCCCCEEChHHcCCCCCCCCCCccccc
Confidence            46667 999999999999999999999999999964

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.68  E-value=8.7e-06  Score=84.23  Aligned_cols=217  Identities=14%  Similarity=0.065  Sum_probs=134.7

Q ss_pred             CEEEEEe--cccEEEEEcCCCceeecccCCcc-eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSLVHQDLLN-VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL   93 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~-~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl   93 (573)
                      .+++++.  .+.|..|+.+..+....+..... +.++.+.+.++++|+++. .+.|.++++.......-+..+ ..|.++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G-~~~~~i   83 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG-GNPRGI   83 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC-CCcceE
Confidence            3444454  57899999887655433443344 456778887889999985 579999999766544344455 589999


Q ss_pred             EEeecCCcEEEEeCCCCeEEEEEcCCCce-eEecc-C----CC--CcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc
Q psy952           94 AVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKT-A----IQ--DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF  165 (573)
Q Consensus        94 avD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~-~----~~--~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~  165 (573)
                      ++.+.++.||+++...+.|.+++...... +.+-. .    ..  .+.+|...|.+ ..|+......+.|+.++......
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEETTTSSC
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEeccccc
Confidence            99999999999999999999998765433 33321 1    12  24466666644 44555445578899988665432


Q ss_pred             EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEe--e-eCCeEEEecC
Q psy952          166 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALT--L-FEDHIYWTDW  237 (573)
Q Consensus       166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia--~-~~~~lywtd~  237 (573)
                      ..+.. ...-..|.+..+|+.+.++|.+-...++|..++........++.....++|..++  . .+...+|+-.
T Consensus       163 ~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~  236 (369)
T PF02239_consen  163 LKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS  236 (369)
T ss_dssp             EEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred             cceee-ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence            22110 2344678999999988889998888889999998876655554432255553333  2 3444666543

...

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=98.68  E-value=1.1e-08  Score=66.61  Aligned_cols=34  Identities=59%  Similarity=1.333  Sum_probs=30.7

Q ss_pred             CCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          410 CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       410 C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      |.++ +|+|.++.|||..++|||..||.|+|||..
T Consensus         1 C~~~-~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~   34 (35)
T cd00112           1 CPPN-EFRCANGRCIPSSWVCDGEDDCGDGSDEEN   34 (35)
T ss_pred             CCCC-eEEcCCCCeeCHHHcCCCccCCCCCccccc
Confidence            3455 899999999999999999999999999964

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=98.64  E-value=8.7e-06  Score=78.59  Aligned_cols=215  Identities=17%  Similarity=0.196  Sum_probs=142.3

Q ss_pred             ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC-----CCcceEEEc-C------CCCCcceeEEeecCC------
Q psy952           39 LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG-----STEKERVIR-H------DSHGLEGLAVDWVGR------  100 (573)
Q Consensus        39 ~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~-----g~~~~~i~~-~------~~~~p~glavD~~~~------  100 (573)
                      .+-+.+.++.||++.+ .+.+|++|...+....++.+     |.....++. .      ....|.|+.+.....      
T Consensus        17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~   95 (336)
T TIGR03118        17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE   95 (336)
T ss_pred             ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence            3456789999999997 66889999988888888876     433222222 1      135799999873222      


Q ss_pred             -------cEEEEeCCCCeEEEEEc--CCC---ceeEecc---CCCCcceEEEeCC--CceEEEEecCCcCeEEEEeccCC
Q psy952          101 -------KLYWLDRHSKQLDVAEL--DGT---NRKTLKT---AIQDPRGITLHPG--IGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus       101 -------~LY~td~~~~~I~~~~l--dg~---~~~~l~~---~~~~P~~Iavdp~--~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                             .||.+  +.++|..-+.  +-.   ...+++.   ...-=+||||-..  ..+||-+|.. +.+|.+.  |++
T Consensus        96 g~~~~a~Fif~t--EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~-~g~IDVF--d~~  170 (336)
T TIGR03118        96 GITGPSRFLFVT--EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR-QGRIDVF--KGS  170 (336)
T ss_pred             CcccceeEEEEe--CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC-CCceEEe--cCc
Confidence                   13333  3455654442  222   1112222   1223568888743  5789999974 7888877  444


Q ss_pred             CcEEEEecCCC--------CCCCceEEEeccCCeEEEEeC-------------CCCeEEEEeCCCCcEEEEEeCCcccee
Q psy952          164 NFTRILTHEDD--------IAWPNALTLDYFTERLYWADA-------------HLDYIASVDLDGKHKHIVISGQKVPHV  222 (573)
Q Consensus       164 ~~~~l~~~~~~--------l~~P~glaiD~~~~~LYw~D~-------------~~~~I~~~~~dG~~~~~l~~~~~~~~p  222 (573)
                      ..++.+  ...        -..|.+|..  .+++||++=+             +.+.|-.++++|...+.+.++..|..|
T Consensus       171 f~~~~~--~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaP  246 (336)
T TIGR03118       171 FRPPPL--PGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAP  246 (336)
T ss_pred             cccccC--CCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCC
Confidence            443322  111        123555554  4899999833             345899999999999988876669999


Q ss_pred             EEEee-------eCCeEEEecCCCCceEEEeccCCcceEEEcccCCCc
Q psy952          223 FALTL-------FEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRP  263 (573)
Q Consensus       223 ~~ia~-------~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p  263 (573)
                      .||++       +.+.|.+.+.+.++|-.++..+|+-+-.|......|
T Consensus       247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p  294 (336)
T TIGR03118       247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP  294 (336)
T ss_pred             ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence            99997       467899999999999999988888766665544444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.62  E-value=0.00012  Score=71.33  Aligned_cols=242  Identities=14%  Similarity=0.062  Sum_probs=144.2

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCceeecccCC-cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQDL-LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~-~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      +|........+|+.+. .+.|+.+++............ ..+..+.+.+.++.|+.+. ..+.|+.+++........+..
T Consensus        13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~~~~   91 (289)
T cd00200          13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGECVRTLTG   91 (289)
T ss_pred             EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCcccceEEEec
Confidence            4444433335666665 567888888755433322222 3345888987665666554 467888888876433223332


Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      ....+..+++... +.++++....+.|.+.++. +.....+......+..++++|.+.+|+...  ....|...++....
T Consensus        92 ~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~i~i~d~~~~~  168 (289)
T cd00200          92 HTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--QDGTIKLWDLRTGK  168 (289)
T ss_pred             cCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc--CCCcEEEEEccccc
Confidence            3346777877764 5666666667889999987 333333333444588999999755555544  24567777776333


Q ss_pred             cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC-CeEEEecCCCCceE
Q psy952          165 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE-DHIYWTDWNTKSIN  243 (573)
Q Consensus       165 ~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~  243 (573)
                      ....+  ...-.....+++.+.+..|+.+.. .+.|...++............ ...+..+++.. +.++++-...+.|.
T Consensus       169 ~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~  244 (289)
T cd00200         169 CVATL--TGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTIR  244 (289)
T ss_pred             cceeE--ecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhc-CCceEEEEEcCCCcEEEEEcCCCcEE
Confidence            22222  222235678898876667777665 778888888754333222221 23556777754 55666655577787


Q ss_pred             EEeccCCcceEEEc
Q psy952          244 RADKFNGRDYRVLR  257 (573)
Q Consensus       244 ~~~~~~g~~~~~l~  257 (573)
                      ..+..++.....+.
T Consensus       245 i~~~~~~~~~~~~~  258 (289)
T cd00200         245 VWDLRTGECVQTLS  258 (289)
T ss_pred             EEEcCCceeEEEcc
Confidence            77765555555444

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.56  E-value=7.7e-06  Score=81.53  Aligned_cols=154  Identities=21%  Similarity=0.316  Sum_probs=99.2

Q ss_pred             CCcceEEEEEEcCC-----CEEEEEECCCCeEEEEEcCCCcceEEEcCC-------------------CCCcceeEEee-
Q psy952           43 DLLNVVAMDFHYKE-----NRFYFADVAAKTIYRSRVGSTEKERVIRHD-------------------SHGLEGLAVDW-   97 (573)
Q Consensus        43 ~~~~~~~v~~d~~~-----~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-------------------~~~p~glavD~-   97 (573)
                      .......|++|...     +.+|++|.....|.++++.......+....                   .....|||+.+ 
T Consensus        59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~  138 (287)
T PF03022_consen   59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI  138 (287)
T ss_dssp             TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred             cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence            44567888899855     589999999888999998764333232211                   12356677765 


Q ss_pred             --cCCcEEEEeCCCCeEEEEEcC----CCc---------eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952           98 --VGRKLYWLDRHSKQLDVAELD----GTN---------RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG  162 (573)
Q Consensus        98 --~~~~LY~td~~~~~I~~~~ld----g~~---------~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG  162 (573)
                        .++.|||.-....+++++...    ...         .+.+........|+++|+ +|.||+++.. ...|.+.+.++
T Consensus       139 ~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~-~~aI~~w~~~~  216 (287)
T PF03022_consen  139 SPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVE-QNAIGCWDPDG  216 (287)
T ss_dssp             STTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECC-CTEEEEEETTT
T ss_pred             CCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCC-CCeEEEEeCCC
Confidence              335799998777788887642    211         112222224568999999 9999999975 67899999998


Q ss_pred             ----CCcEEEEecCCCCCCCceEEEec-cCCeEEEEeCCCC
Q psy952          163 ----SNFTRILTHEDDIAWPNALTLDY-FTERLYWADAHLD  198 (573)
Q Consensus       163 ----~~~~~l~~~~~~l~~P~glaiD~-~~~~LYw~D~~~~  198 (573)
                          .+..+|+.....|.||.+|+|+. .++.||+......
T Consensus       217 ~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~  257 (287)
T PF03022_consen  217 PYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQ  257 (287)
T ss_dssp             SB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--
T ss_pred             CcCccchheeEEcCceeeccceeeeccccCceEEEEECcch
Confidence                45566665344499999999994 2689999875443

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.52  E-value=6.8e-08  Score=62.06  Aligned_cols=32  Identities=59%  Similarity=1.265  Sum_probs=29.6

Q ss_pred             CCCCCceecCCCcccCCCcccCCCCCCCCCCCC
Q psy952          410 CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE  442 (573)
Q Consensus       410 C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE  442 (573)
                      |... +|+|.++.|||..++||+++||.|+|||
T Consensus         2 C~~~-~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPG-EFQCDNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCC-eEECCCCCEECchhhCCCcCcCcCCCCC
Confidence            4555 8999999999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.47  E-value=1.6e-07  Score=83.92  Aligned_cols=79  Identities=34%  Similarity=0.539  Sum_probs=60.0

Q ss_pred             CCCcCCCCCCCccc-cCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccccCCCCCCCcCCCceee
Q psy952          454 KGWERCPGKTNYRC-IPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKC  532 (573)
Q Consensus       454 ~~~~~C~~~~~~~c-~~~~~~Cdg~~dC~d~sDe~~~~C~~c~~~~~Cd~~~dC~dg~~~de~~~~C~~~~~C~~~~f~C  532 (573)
                      .+.|.|..  +..- |+..++.|+.-||+|||||+         +                        ..-|..+.|.|
T Consensus        35 ~~~f~Cl~--~~~~~I~~~~iNDdyCDC~DGSDEP---------G------------------------TsAC~~~~FyC   79 (176)
T PF12999_consen   35 NGKFTCLD--GSKIVIPFSQINDDYCDCPDGSDEP---------G------------------------TSACSNGKFYC   79 (176)
T ss_pred             CCceEecC--CCCceecHHHccCcceeCCCCCCcc---------c------------------------cccCcCceEee
Confidence            45688875  2233 78888999999999988882         1                        12345568999


Q ss_pred             CCCC---ceecCCcCcCCCCC---CCCCCCCCCCCCCCCCCC
Q psy952          533 ANTN---ICVEPYWLCDGDND---CGDMSDEDPLHCQQRTCP  568 (573)
Q Consensus       533 ~~~~---~Ci~~~~~Cdg~~d---C~d~sDe~~~~c~~~~c~  568 (573)
                      .|.+   .-||.++|=||+=|   |=|||||....|++ +|.
T Consensus        80 ~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~~~C~N-~C~  120 (176)
T PF12999_consen   80 ENKGHIPRYIPSSRVNDGICDYDICCDGSDESGGKCPN-TCA  120 (176)
T ss_pred             ccCCCCCceeehhhhcCCcCcccccCCCCCCCCCCCcc-HHH
Confidence            8864   78999999999999   99999997667875 353

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=0.00015  Score=77.19  Aligned_cols=223  Identities=12%  Similarity=0.099  Sum_probs=139.7

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ..|+..+.+|.+...+......+..+.|.+.+++|+++...  ...|+.+++.++..+.+.... .....+++.+.++.|
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~L  262 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRL  262 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEE
Confidence            46777788887765544444457789999999999887543  347999999876554443221 223457787778888


Q ss_pred             EEEeCCCC--eEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952          103 YWLDRHSK--QLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPN  179 (573)
Q Consensus       103 Y~td~~~~--~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~  179 (573)
                      +++-...+  .|+++++++...+.+..........++.|....|+++.. .....|++++.++...+.+.  ...    .
T Consensus       263 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--~~~----~  336 (429)
T PRK01742        263 AFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--GRG----Y  336 (429)
T ss_pred             EEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--CCC----C
Confidence            88753333  578888887766666544444667889998777777642 33568999888877654432  221    2


Q ss_pred             eEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCC-CCceEEEeccCCcceEEEc
Q psy952          180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWN-TKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~-~~~I~~~~~~~g~~~~~l~  257 (573)
                      .+++.++++.|+++..  ..|..+++.+...+.+.... .......+..+..|+++... ...+..+...+|...+.|.
T Consensus       337 ~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~  412 (429)
T PRK01742        337 SAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP  412 (429)
T ss_pred             CccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence            3567778888888754  55777888766555443321 11112234456667776443 2333333335676666554

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.44  E-value=1.9e-07  Score=83.36  Aligned_cols=73  Identities=41%  Similarity=0.645  Sum_probs=59.9

Q ss_pred             ceecCCC-cc-cCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCC-CccccCCccccCCCCC---CCCCCCCCC
Q psy952          415 EFACRNG-HC-IPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKT-NYRCIPKWLFCDGKDD---CRDGSDELP  488 (573)
Q Consensus       415 ~f~C~~g-~c-i~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~-~~~c~~~~~~Cdg~~d---C~d~sDe~~  488 (573)
                      .|+|.+| += |+.+++.|+.-||.|||||..    ...|..+.|.|.+.+ ...-||.+++-||+-|   |-|||||..
T Consensus        37 ~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPG----TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~  112 (176)
T PF12999_consen   37 KFTCLDGSKIVIPFSQINDDYCDCPDGSDEPG----TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDESG  112 (176)
T ss_pred             ceEecCCCCceecHHHccCcceeCCCCCCccc----cccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCCCC
Confidence            7999988 34 899999999999999999975    335888899998732 1346889999999999   999999954


Q ss_pred             CCC
Q psy952          489 QNC  491 (573)
Q Consensus       489 ~~C  491 (573)
                      ..|
T Consensus       113 ~~C  115 (176)
T PF12999_consen  113 GKC  115 (176)
T ss_pred             CCC
Confidence            445

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.42  E-value=0.00027  Score=74.95  Aligned_cols=224  Identities=8%  Similarity=0.047  Sum_probs=136.1

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCE---EEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENR---FYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR  100 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~---ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~  100 (573)
                      ..|+.++.+|.+...+..........+|.+.++.   +|++... ...|+.++++|+..+.+.... ......++.+.++
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSPDG~  243 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-GNQLMPTFSPRKK  243 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-CCccceEECCCCC
Confidence            3788999999877665444333455678887764   3455443 458999999988776665322 2334567777788


Q ss_pred             cEEEEeCC--CCeEEEE--EcCC---CceeEeccC-CCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCC--cEEEE
Q psy952          101 KLYWLDRH--SKQLDVA--ELDG---TNRKTLKTA-IQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSN--FTRIL  169 (573)
Q Consensus       101 ~LY~td~~--~~~I~~~--~ldg---~~~~~l~~~-~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~--~~~l~  169 (573)
                      +|.|+-..  ...|++.  ++.+   ...+.+... .......++.|....|+|+.. .....|+++.+++..  .+.+.
T Consensus       244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt  323 (428)
T PRK01029        244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT  323 (428)
T ss_pred             EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence            88887633  3356554  4432   222333322 223456789998777777643 335679998886432  33332


Q ss_pred             ecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecC--CCCceE
Q psy952          170 THEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDW--NTKSIN  243 (573)
Q Consensus       170 ~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~--~~~~I~  243 (573)
                         .........++.+++++|+++...  ...|+.+++++...+.+....  ......++  ++..||++-.  ....|+
T Consensus       324 ---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        324 ---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP--ENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             ---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC--CCccceEECCCCCEEEEEECCCCCceEE
Confidence               222233466788889989887543  347999999988877765432  12233444  4566776532  345688


Q ss_pred             EEeccCCcceE
Q psy952          244 RADKFNGRDYR  254 (573)
Q Consensus       244 ~~~~~~g~~~~  254 (573)
                      .++..+++...
T Consensus       399 ~vdl~~g~~~~  409 (428)
T PRK01029        399 LISLITKKTRK  409 (428)
T ss_pred             EEECCCCCEEE
Confidence            88865554433

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.42  E-value=2.6e-05  Score=81.68  Aligned_cols=155  Identities=17%  Similarity=0.211  Sum_probs=105.5

Q ss_pred             EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec------c--CCCCcceEEEeCC------CceEEEE
Q psy952           82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK------T--AIQDPRGITLHPG------IGYVYFS  147 (573)
Q Consensus        82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~------~--~~~~P~~Iavdp~------~g~LYwt  147 (573)
                      ++.++|..|.+|++.+ .++||++....++|.+++.++...+.+.      .  +...+.+||++|.      +++||++
T Consensus        24 ~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs  102 (454)
T TIGR03606        24 VLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS  102 (454)
T ss_pred             EEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence            4567899999999987 4689999987789999887654433221      1  2344899999975      4678887


Q ss_pred             ecC--------CcCeEEEEeccCC-----CcEEEEecC--CCCCCCceEEEeccCCeEEEE--eC---------------
Q psy952          148 SWN--------LQAYIGKIGMDGS-----NFTRILTHE--DDIAWPNALTLDYFTERLYWA--DA---------------  195 (573)
Q Consensus       148 d~~--------~~~~I~r~~ldG~-----~~~~l~~~~--~~l~~P~glaiD~~~~~LYw~--D~---------------  195 (573)
                      -..        ...+|.|+.++..     ..++|+...  ...+.-..|++++ +++||++  |.               
T Consensus       103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ  181 (454)
T TIGR03606       103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQ  181 (454)
T ss_pred             EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhc
Confidence            421        2457999988632     234454201  1123445789986 5689996  22               


Q ss_pred             ---------------CCCeEEEEeCCCCc-----------EEEEEeCCccceeEEEeee-CCeEEEecCCCC
Q psy952          196 ---------------HLDYIASVDLDGKH-----------KHIVISGQKVPHVFALTLF-EDHIYWTDWNTK  240 (573)
Q Consensus       196 ---------------~~~~I~~~~~dG~~-----------~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~  240 (573)
                                     ..++|.|++.||+.           .++...+  +.+|.+|+++ .+.||.+|-+..
T Consensus       182 ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G--~RNp~Gla~dp~G~Lw~~e~Gp~  251 (454)
T TIGR03606       182 HTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYG--HRNPQGLAFTPDGTLYASEQGPN  251 (454)
T ss_pred             cccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEe--ccccceeEECCCCCEEEEecCCC
Confidence                           13489999999962           2444445  7899999996 678999887653

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.42  E-value=1.4e-06  Score=69.57  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             ceeEEeecCCcEEEEeCC-----------------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcC
Q psy952           91 EGLAVDWVGRKLYWLDRH-----------------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQA  153 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~-----------------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~  153 (573)
                      ++|+|+..++.|||||+.                 +|++.+.++.....++|+.+|..|+|||+++....|++++.. ..
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~-~~   79 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG-RY   79 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG-GT
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc-Cc
Confidence            368999777999999964                 278999999999999999999999999999999999999965 67


Q ss_pred             eEEEEeccCC
Q psy952          154 YIGKIGMDGS  163 (573)
Q Consensus       154 ~I~r~~ldG~  163 (573)
                      +|.|..+.|.
T Consensus        80 Ri~rywl~Gp   89 (89)
T PF03088_consen   80 RILRYWLKGP   89 (89)
T ss_dssp             EEEEEESSST
T ss_pred             eEEEEEEeCC
Confidence            9999998873

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.39  E-value=7.6e-05  Score=79.68  Aligned_cols=185  Identities=11%  Similarity=0.061  Sum_probs=121.4

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC--CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA--KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ..|+.+++.+.....+.........++|.+.+++|+++....  ..|++++++++..+.+... .......++.+.++.|
T Consensus       242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~-~~~~~~p~wSpDG~~I  320 (448)
T PRK04792        242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH-RAIDTEPSWHPDGKSL  320 (448)
T ss_pred             cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC-CCCccceEECCCCCEE
Confidence            368899988765544432222234678999899898864333  3699999987765554432 2344556777778888


Q ss_pred             EEEeC--CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952          103 YWLDR--HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPN  179 (573)
Q Consensus       103 Y~td~--~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~  179 (573)
                      +++..  +...|+++++++...+.|........+.++.|...+||++... ....|+++++++...+.+.  ....  ..
T Consensus       321 ~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~~~~--d~  396 (448)
T PRK04792        321 IFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT--STRL--DE  396 (448)
T ss_pred             EEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc--CCCC--CC
Confidence            88753  3357999999866655553222234456889988899888643 2347899999887665554  2222  12


Q ss_pred             eEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEE
Q psy952          180 ALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVI  214 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~  214 (573)
                      ..++.+.++.|+++....  ..|+.++.+|...+.+.
T Consensus       397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~  433 (448)
T PRK04792        397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP  433 (448)
T ss_pred             CceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence            336777888888876543  35888899988776654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.39  E-value=8.4e-05  Score=79.23  Aligned_cols=185  Identities=18%  Similarity=0.100  Sum_probs=123.5

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ..|+.+++.+.....+........+.+|.+.+++|+++-..  ...|+.++++++....+.. ........++.+.++.|
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-~~~~~~~~~~spDG~~i  304 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-SPAIDTSPSYSPDGSQI  304 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC-CCCccCceeEcCCCCEE
Confidence            57888898776554443323345577899888888776433  3579999998876655443 22234456777777878


Q ss_pred             EEEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952          103 YWLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPN  179 (573)
Q Consensus       103 Y~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~  179 (573)
                      +++...  ...|++++++|...+.+......-...++.|..++|+++... ....|...+++|...+.+.  ..  ....
T Consensus       305 ~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~--~~~~  380 (435)
T PRK05137        305 VFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT--SG--FLVE  380 (435)
T ss_pred             EEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc--CC--CCCC
Confidence            776532  347999999987766665332233456788988888887632 2357888898887765544  22  1345


Q ss_pred             eEEEeccCCeEEEEeCCC-----CeEEEEeCCCCcEEEEE
Q psy952          180 ALTLDYFTERLYWADAHL-----DYIASVDLDGKHKHIVI  214 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~~-----~~I~~~~~dG~~~~~l~  214 (573)
                      .+++.+.++.||++-...     ..|+.++++|...+.+.
T Consensus       381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence            678888888888864422     46999999988776554

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.35  E-value=1.1e-06  Score=60.44  Aligned_cols=38  Identities=39%  Similarity=0.817  Sum_probs=35.7

Q ss_pred             CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc
Q psy952          172 EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH  209 (573)
Q Consensus       172 ~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~  209 (573)
                      ...+..|+||++|+.+++|||+|.....|++++++|+.
T Consensus         5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~   42 (43)
T smart00135        5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN   42 (43)
T ss_pred             ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence            46899999999999999999999999999999999975

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.32  E-value=0.00057  Score=66.85  Aligned_cols=207  Identities=11%  Similarity=0.037  Sum_probs=131.6

Q ss_pred             CEEEEEe--cccEEEEEcC-CCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEc----------CCCc-----
Q psy952           17 PWLIFSN--KYYVRNMSLD-ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV----------GSTE-----   78 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~-g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~----------~g~~-----   78 (573)
                      -.|.++.  .+++..+.++ .....+....+..+.||+..  .++||++-..  .|+++..          .+..     
T Consensus        18 ~Sla~sTYQagkL~~ig~~~~g~l~~~~r~F~r~MGl~~~--~~~l~~~t~~--qiw~f~~~~n~l~~~~~~~~~D~~yv   93 (335)
T TIGR03032        18 LSLAVTTYQAGKLFFIGLQPNGELDVFERTFPRPMGLAVS--PQSLTLGTRY--QLWRFANVDNLLPAGQTHPGYDRLYV   93 (335)
T ss_pred             eEEEEEeeecceEEEEEeCCCCcEEEEeeccCccceeeee--CCeEEEEEcc--eeEEcccccccccccccCCCCCeEEe
Confidence            3456664  3567767655 33466666778889999886  6889997643  5666611          1111     


Q ss_pred             ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE----eccC-----CCCcceEEEeCCCceEEEEec
Q psy952           79 KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT----LKTA-----IQDPRGITLHPGIGYVYFSSW  149 (573)
Q Consensus        79 ~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~----l~~~-----~~~P~~Iavdp~~g~LYwtd~  149 (573)
                      ++....++--....||+  ..+.|++.++.-.-+-.++..-+.+..    +++.     --+-+|||+.. ..--|+|-.
T Consensus        94 Pr~~~~TGdidiHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~  170 (335)
T TIGR03032        94 PRASYVTGDIDAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTAL  170 (335)
T ss_pred             eeeeeeccCcchhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-CeEEEEEEe
Confidence            11112233345667777  567888888777777777666555432    3332     23478999975 556777764


Q ss_pred             CCc--CeEEEEec-cCC------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccc
Q psy952          150 NLQ--AYIGKIGM-DGS------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVP  220 (573)
Q Consensus       150 ~~~--~~I~r~~l-dG~------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~  220 (573)
                      +..  +.-+|-.. +|.      .-++++   +++..|.+--..  +++||+.|++++.|.+++++.+..+.+..-  -.
T Consensus       171 ~~sD~~~gWR~~~~~gG~vidv~s~evl~---~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~v--pG  243 (335)
T TIGR03032       171 SQSDVADGWREGRRDGGCVIDIPSGEVVA---SGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFL--PG  243 (335)
T ss_pred             eccCCcccccccccCCeEEEEeCCCCEEE---cCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEEC--CC
Confidence            421  22222221 111      123343   678888887776  899999999999999999985555555543  34


Q ss_pred             eeEEEeeeCCeEEEecC
Q psy952          221 HVFALTLFEDHIYWTDW  237 (573)
Q Consensus       221 ~p~~ia~~~~~lywtd~  237 (573)
                      .|.||++.++.+|++-.
T Consensus       244 ~~rGL~f~G~llvVgmS  260 (335)
T TIGR03032       244 FTRGLAFAGDFAFVGLS  260 (335)
T ss_pred             CCcccceeCCEEEEEec
Confidence            89999999888888744

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=0.00016  Score=77.05  Aligned_cols=193  Identities=14%  Similarity=0.090  Sum_probs=124.7

Q ss_pred             EEEEEe----cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952           18 WLIFSN----KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLE   91 (573)
Q Consensus        18 ~l~~s~----~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~   91 (573)
                      .|+|..    ...|+++++.+.....+........+++|.+.+++|+++-..  ...|+.++++++....+.. ......
T Consensus       217 ~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~  295 (433)
T PRK04922        217 KLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDT  295 (433)
T ss_pred             EEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-CCCCcc
Confidence            455543    246888998766554443222233467899988888876432  3479999998776554433 222334


Q ss_pred             eeEEeecCCcEEEEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEE
Q psy952           92 GLAVDWVGRKLYWLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRI  168 (573)
Q Consensus        92 glavD~~~~~LY~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l  168 (573)
                      ..++.+.++.|+++...  ...|+++++++...+.+.........++++|...+|+++... ....|+..++++...+.+
T Consensus       296 ~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L  375 (433)
T PRK04922        296 EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL  375 (433)
T ss_pred             ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence            56777777888876532  346999998876655554332335578999988899887632 234788889877665544


Q ss_pred             EecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCCCCcEEEEEe
Q psy952          169 LTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLDGKHKHIVIS  215 (573)
Q Consensus       169 ~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~l~~  215 (573)
                      .  ...  .....++.+.+..|+++...  ...|+.++++|...+.+..
T Consensus       376 t--~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~  420 (433)
T PRK04922        376 T--PGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS  420 (433)
T ss_pred             C--CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence            3  221  23355778778888877543  4579999999877666543

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.29  E-value=3e-06  Score=67.70  Aligned_cols=72  Identities=19%  Similarity=0.227  Sum_probs=58.2

Q ss_pred             ceEEEeCCCceEEEEecCC----------------cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952          133 RGITLHPGIGYVYFSSWNL----------------QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH  196 (573)
Q Consensus       133 ~~Iavdp~~g~LYwtd~~~----------------~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~  196 (573)
                      .+|+|++..|.|||||.+.                .+++.+.++.....+++.   ++|..|||+++.+++..|++++..
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~---~~L~fpNGVals~d~~~vlv~Et~   77 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL---DGLYFPNGVALSPDESFVLVAETG   77 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE---EEESSEEEEEE-TTSSEEEEEEGG
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh---hCCCccCeEEEcCCCCEEEEEecc
Confidence            4789999779999999742                358999999888777777   789999999999999999999999


Q ss_pred             CCeEEEEeCCC
Q psy952          197 LDYIASVDLDG  207 (573)
Q Consensus       197 ~~~I~~~~~dG  207 (573)
                      ..+|.++-+.|
T Consensus        78 ~~Ri~rywl~G   88 (89)
T PF03088_consen   78 RYRILRYWLKG   88 (89)
T ss_dssp             GTEEEEEESSS
T ss_pred             CceEEEEEEeC
Confidence            99999998887

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.29  E-value=1.9e-06  Score=59.15  Aligned_cols=41  Identities=41%  Similarity=0.771  Sum_probs=36.9

Q ss_pred             EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952           81 RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        81 ~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~  121 (573)
                      +++..++..|.|||+||.+++|||+|...+.|.+++++|..
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~   42 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN   42 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence            35556789999999999999999999999999999999875

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.25  E-value=0.00031  Score=74.08  Aligned_cols=189  Identities=9%  Similarity=-0.007  Sum_probs=122.9

Q ss_pred             CCEEEEEECC---CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCc-EEEEeCC--CCeEEEEEcCCCceeEeccCC
Q psy952           56 ENRFYFADVA---AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK-LYWLDRH--SKQLDVAELDGTNRKTLKTAI  129 (573)
Q Consensus        56 ~~~ly~~d~~---~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~-LY~td~~--~~~I~~~~ldg~~~~~l~~~~  129 (573)
                      +..+|++...   ...|+.++.+|.+.+++...+  ......+.+.+++ +|++...  ...|++.++.+..++.|...-
T Consensus       155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~  232 (419)
T PRK04043        155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ  232 (419)
T ss_pred             eeEEEEEEccCCCcceEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC
Confidence            6788888732   458999999999877666543  2233445555664 7776543  468999999887777766422


Q ss_pred             CCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC--CeEEEEeCC
Q psy952          130 QDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL--DYIASVDLD  206 (573)
Q Consensus       130 ~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~--~~I~~~~~d  206 (573)
                      ......++.|....|.++.. .....|+.+++++...+.|.  .... .-....+.+++.+||++....  ..|++++++
T Consensus       233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT--~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~  309 (419)
T PRK04043        233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT--NYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN  309 (419)
T ss_pred             CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc--cCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence            22334568887777877653 23578999999888766654  2211 112336778888999886543  379999999


Q ss_pred             CCcEEEEEeCCccceeEEEeeeCCeEEEecCCC--------CceEEEeccCCc
Q psy952          207 GKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT--------KSINRADKFNGR  251 (573)
Q Consensus       207 G~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~--------~~I~~~~~~~g~  251 (573)
                      |+..+.+.... ...+ .+..++++|.++-...        ..|+.++..+|.
T Consensus       310 ~g~~~rlt~~g-~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        310 SGSVEQVVFHG-KNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             CCCeEeCccCC-CcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence            88875555432 2233 5666777776664332        367777765554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.21  E-value=0.0015  Score=63.61  Aligned_cols=217  Identities=15%  Similarity=0.075  Sum_probs=126.1

Q ss_pred             EEEEEe-cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952           18 WLIFSN-KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAV   95 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glav   95 (573)
                      +|+.+. ...|+.+++..... ..+......+..+.+.+. +.++++....+.|..+++........+......+..+++
T Consensus        65 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~  143 (289)
T cd00200          65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF  143 (289)
T ss_pred             EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence            455444 56788888875332 222223335788999876 556666666788999998743333233323346788888


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCC-ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGT-NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD  174 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~-~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~  174 (573)
                      ++.+ .++++-...+.|.+.++... ....+......+..|+++|....|+.+..  ...|...++........+  ...
T Consensus       144 ~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~--~~~  218 (289)
T cd00200         144 SPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTL--RGH  218 (289)
T ss_pred             cCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC--CCcEEEEECCCCceecch--hhc
Confidence            8764 44444445678999988743 33333333346889999997667777653  566777776543222222  122


Q ss_pred             CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCC-eEEEecCCCCce
Q psy952          175 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFED-HIYWTDWNTKSI  242 (573)
Q Consensus       175 l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~-~lywtd~~~~~I  242 (573)
                      -..+..+++++. +.++++....+.|...++........+... ...+.++++..+ .++++-...+.|
T Consensus       219 ~~~i~~~~~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i  285 (289)
T cd00200         219 ENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGSADGTI  285 (289)
T ss_pred             CCceEEEEEcCC-CcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEecCCCeE
Confidence            235678888865 666666656788888887743332222221 234566776542 344443333333

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.21  E-value=0.00016  Score=69.69  Aligned_cols=167  Identities=14%  Similarity=0.192  Sum_probs=112.1

Q ss_pred             ccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE------E-Ec---CCCCCccee
Q psy952           25 YYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER------V-IR---HDSHGLEGL   93 (573)
Q Consensus        25 ~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~------i-~~---~~~~~p~gl   93 (573)
                      -.|..+++.|.-. ++++.+++.|.+|+|- .++..-++|...++++.+.++-.....      + +.   .....-+||
T Consensus       108 ~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGl  186 (316)
T COG3204         108 AAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGL  186 (316)
T ss_pred             ceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceee
Confidence            4677788888655 4667788889999987 456666677777788887776432111      1 11   113467899


Q ss_pred             EEeecCCcEEEEeCCC-CeEEEEEcCCCceeE--ec--c-----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           94 AVDWVGRKLYWLDRHS-KQLDVAELDGTNRKT--LK--T-----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        94 avD~~~~~LY~td~~~-~~I~~~~ldg~~~~~--l~--~-----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      |.|+..+.||++-..+ -.|+..+..-....+  ..  +     -+.+..|+.+++.++.|++-.. ....+...+++|.
T Consensus       187 A~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~-ESr~l~Evd~~G~  265 (316)
T COG3204         187 AWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD-ESRRLLEVDLSGE  265 (316)
T ss_pred             ecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec-CCceEEEEecCCC
Confidence            9999999999997543 245544432211111  11  1     1345789999999999998864 3567888888888


Q ss_pred             CcEEEEe------cCCCCCCCceEEEeccCCeEEEEe
Q psy952          164 NFTRILT------HEDDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       164 ~~~~l~~------~~~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      .+..+..      ...++..|.|||+| ..+.||++.
T Consensus       266 ~~~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvS  301 (316)
T COG3204         266 VIELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVS  301 (316)
T ss_pred             eeeeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEe
Confidence            6555432      24567889999999 688899875

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.17  E-value=0.00051  Score=72.76  Aligned_cols=191  Identities=13%  Similarity=0.053  Sum_probs=122.3

Q ss_pred             EEEEEec----ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952           18 WLIFSNK----YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLE   91 (573)
Q Consensus        18 ~l~~s~~----~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~   91 (573)
                      +|+|+..    ..|+++++.+.....+........+++|.+.++.||++...  ...|+.+++++...+.+.... ....
T Consensus       203 ~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~  281 (417)
T TIGR02800       203 KLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDT  281 (417)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCC
Confidence            4555432    46888888766544433322334568899888889887543  347999999876555443322 2223


Q ss_pred             eeEEeecCCcEEEEeC--CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEE
Q psy952           92 GLAVDWVGRKLYWLDR--HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRI  168 (573)
Q Consensus        92 glavD~~~~~LY~td~--~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l  168 (573)
                      ..++.+.++.|+++..  ....|+++++++...+.+.........++++|...+|+++.... ...|..+++++...+.+
T Consensus       282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l  361 (417)
T TIGR02800       282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVL  361 (417)
T ss_pred             CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEc
Confidence            4566666778877653  23479999998776655554445567788999888899987432 34788888887655544


Q ss_pred             EecCCCCCCCceEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEE
Q psy952          169 LTHEDDIAWPNALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIV  213 (573)
Q Consensus       169 ~~~~~~l~~P~glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l  213 (573)
                      .  ...  .....++.+.++.|+++....  ..++.++.+|...+.+
T Consensus       362 ~--~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~  404 (417)
T TIGR02800       362 T--DTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL  404 (417)
T ss_pred             c--CCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence            4  221  223446777788898876644  3577777777665444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.001  Score=70.79  Aligned_cols=192  Identities=11%  Similarity=0.052  Sum_probs=122.8

Q ss_pred             CCEEEEEECC----CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC--CCCeEEEEEcCCCceeEeccCC
Q psy952           56 ENRFYFADVA----AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR--HSKQLDVAELDGTNRKTLKTAI  129 (573)
Q Consensus        56 ~~~ly~~d~~----~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~--~~~~I~~~~ldg~~~~~l~~~~  129 (573)
                      +..+|++...    ...|+.++.+|.....+.... ......++.+.++.|.|+..  ....|++.++++...+.+....
T Consensus       164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~-~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~  242 (429)
T PRK03629        164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP  242 (429)
T ss_pred             CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCC-CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC
Confidence            5556666532    237999999998877665433 45567788888888877642  3457999999877666555322


Q ss_pred             CCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCC
Q psy952          130 QDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLD  206 (573)
Q Consensus       130 ~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~d  206 (573)
                      .....++++|....|+++... ....|+..++++...+.+.   ..-......++.+++++|+++-..  ...|+.++++
T Consensus       243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt---~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~  319 (429)
T PRK03629        243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN  319 (429)
T ss_pred             CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc---CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC
Confidence            334568899988889987532 2457999999877665554   222234567888888888665432  3479999999


Q ss_pred             CCcEEEEEeCCccceeEEEeeeCCeEEEecCC--CCceEEEeccCCc
Q psy952          207 GKHKHIVISGQKVPHVFALTLFEDHIYWTDWN--TKSINRADKFNGR  251 (573)
Q Consensus       207 G~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~--~~~I~~~~~~~g~  251 (573)
                      +...+.+...........+..++.+|+++...  ...|+.++..+|.
T Consensus       320 ~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        320 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             CCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            87766654432111112233456677665433  2357777765554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.14  E-value=0.00065  Score=72.19  Aligned_cols=193  Identities=11%  Similarity=0.046  Sum_probs=120.4

Q ss_pred             CCEEEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC--CCeEEEEEcCCCceeEeccCCCCc
Q psy952           56 ENRFYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH--SKQLDVAELDGTNRKTLKTAIQDP  132 (573)
Q Consensus        56 ~~~ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~--~~~I~~~~ldg~~~~~l~~~~~~P  132 (573)
                      +.-+|++... ...|+.++.+|...+.+.... ......++.+.++.|+++...  ...|++.++.+...+.+.......
T Consensus       164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~  242 (427)
T PRK02889        164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN  242 (427)
T ss_pred             cEEEEEEccCCccEEEEECCCCCCceEeccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc
Confidence            4455665432 357899999887766665433 344566777778888877643  346999999877665554322234


Q ss_pred             ceEEEeCCCceEEEEe-cCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC--CCCeEEEEeCCCCc
Q psy952          133 RGITLHPGIGYVYFSS-WNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA--HLDYIASVDLDGKH  209 (573)
Q Consensus       133 ~~Iavdp~~g~LYwtd-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~~dG~~  209 (573)
                      ...++.|....|+++- ......|+++++++...+.+.   ..-......++.+++.+|+++..  +...|+.+++++..
T Consensus       243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT---QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC---CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence            5788999888888763 233568999999887765554   21122345678888888887643  34478899988766


Q ss_pred             EEEEEeCCccceeEEEeeeCCeEEEecCCC--CceEEEeccCCcc
Q psy952          210 KHIVISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADKFNGRD  252 (573)
Q Consensus       210 ~~~l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~~~g~~  252 (573)
                      .+.+...........+..++.+|+++....  ..|+..+..++..
T Consensus       320 ~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~  364 (427)
T PRK02889        320 AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV  364 (427)
T ss_pred             eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence            555443211111223444677787765433  3577777655543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.13  E-value=0.0009  Score=71.24  Aligned_cols=192  Identities=12%  Similarity=0.072  Sum_probs=120.3

Q ss_pred             CCEEEEEECCC-----CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC--CCeEEEEEcCCCceeEeccC
Q psy952           56 ENRFYFADVAA-----KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH--SKQLDVAELDGTNRKTLKTA  128 (573)
Q Consensus        56 ~~~ly~~d~~~-----~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~--~~~I~~~~ldg~~~~~l~~~  128 (573)
                      +..+|++....     .+|+.++.+|.....+...+ ......++.+.++.|+++...  ...|++.++++...+.+...
T Consensus       163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~  241 (430)
T PRK00178        163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSR-EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF  241 (430)
T ss_pred             eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCC-CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC
Confidence            45666654322     25888888887766665443 344566777778888776533  35799999987766655432


Q ss_pred             CCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeC
Q psy952          129 IQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDL  205 (573)
Q Consensus       129 ~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~  205 (573)
                      -......++.|...+|+++-.. ....|++.++++...+.+.   ..-......++.+++++||++...  ...|+.+++
T Consensus       242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~  318 (430)
T PRK00178        242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT---NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV  318 (430)
T ss_pred             CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcc---cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            2233467889987788876432 3468999999887766554   222223456777788888877543  347999998


Q ss_pred             CCCcEEEEEeCCccceeEEEeeeCCeEEEecCCC--CceEEEeccCCc
Q psy952          206 DGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADKFNGR  251 (573)
Q Consensus       206 dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~~~g~  251 (573)
                      ++...+.+...........+..++++|+++....  ..|+.++..+|.
T Consensus       319 ~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        319 NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             CCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence            8776655543221122223445677888875433  247777765554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=98.12  E-value=0.00028  Score=68.40  Aligned_cols=182  Identities=11%  Similarity=0.105  Sum_probs=111.6

Q ss_pred             EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-----CCceeEec--c------CCCCcceEEEeCCCc------
Q psy952           82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-----GTNRKTLK--T------AIQDPRGITLHPGIG------  142 (573)
Q Consensus        82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-----g~~~~~l~--~------~~~~P~~Iavdp~~g------  142 (573)
                      .+...+..|.||++.+ ++.++++|..++.....+.+     |.....++  .      ....|.||++....+      
T Consensus        17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~   95 (336)
T TIGR03118        17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE   95 (336)
T ss_pred             ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence            3445688999999987 56888899989888888877     43322222  1      234699999985443      


Q ss_pred             -------eEEEEecCCcCeEEEEe--ccCC---CcEEEEecCCCCCCCceEEEecc--CCeEEEEeCCCCeEEEEeCCCC
Q psy952          143 -------YVYFSSWNLQAYIGKIG--MDGS---NFTRILTHEDDIAWPNALTLDYF--TERLYWADAHLDYIASVDLDGK  208 (573)
Q Consensus       143 -------~LYwtd~~~~~~I~r~~--ldG~---~~~~l~~~~~~l~~P~glaiD~~--~~~LYw~D~~~~~I~~~~~dG~  208 (573)
                             +||.|+.+   .|.--.  ++-.   ...+++........-.||||-..  ..+||-+|...++|.+++-.  
T Consensus        96 g~~~~a~Fif~tEdG---TisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~--  170 (336)
T TIGR03118        96 GITGPSRFLFVTEDG---TLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS--  170 (336)
T ss_pred             CcccceeEEEEeCCc---eEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc--
Confidence                   36666533   332222  2222   11223311112333468888744  68999999999999998543  


Q ss_pred             cEEEEEeCC----c---cceeEEEeeeCCeEEEecCCC-------------CceEEEeccCCcceEEEcc--cCCCceee
Q psy952          209 HKHIVISGQ----K---VPHVFALTLFEDHIYWTDWNT-------------KSINRADKFNGRDYRVLRN--TTHRPYDI  266 (573)
Q Consensus       209 ~~~~l~~~~----~---~~~p~~ia~~~~~lywtd~~~-------------~~I~~~~~~~g~~~~~l~~--~~~~p~~i  266 (573)
                      ..++.+.+.    .   -..|++|...+++||+|=...             +.|-+++ .+|..++.+..  .+..|.+|
T Consensus       171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd-~~G~l~~r~as~g~LNaPWG~  249 (336)
T TIGR03118       171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFT-LNGQLLRRVASSGRLNAPWGL  249 (336)
T ss_pred             cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEc-CCCcEEEEeccCCcccCCcee
Confidence            332222211    0   236899999999999983322             3455554 46666665533  37789998


Q ss_pred             eeee
Q psy952          267 HVYH  270 (573)
Q Consensus       267 ~v~~  270 (573)
                      ++-.
T Consensus       250 a~AP  253 (336)
T TIGR03118       250 AIAP  253 (336)
T ss_pred             eeCh
Confidence            8743

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.11  E-value=0.0015  Score=69.36  Aligned_cols=188  Identities=9%  Similarity=0.040  Sum_probs=119.3

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEE--EcCC---CcceEEEcCCCCCcceeEEee
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRS--RVGS---TEKERVIRHDSHGLEGLAVDW   97 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~--~~~g---~~~~~i~~~~~~~p~glavD~   97 (573)
                      ..|+.+++++.....+...-....+.+|.+.+++|.|+-..  ...|+..  ++.+   +....+...........++.+
T Consensus       211 ~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP  290 (428)
T PRK01029        211 PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP  290 (428)
T ss_pred             ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC
Confidence            47999999877655554333344567899989898887532  2356654  4432   233334433223334567877


Q ss_pred             cCCcEEEEeCC--CCeEEEEEcCC--CceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecC
Q psy952           98 VGRKLYWLDRH--SKQLDVAELDG--TNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHE  172 (573)
Q Consensus        98 ~~~~LY~td~~--~~~I~~~~ldg--~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~  172 (573)
                      .++.|+|+...  ...|+++++++  ...+.+..........+..|...+|+++... ....|++.++++...+.+.  .
T Consensus       291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt--~  368 (428)
T PRK01029        291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT--T  368 (428)
T ss_pred             CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc--C
Confidence            78888776532  34788888864  3233333333344677899988888887532 2457999999888776665  2


Q ss_pred             CCCCCCceEEEeccCCeEEEEeC--CCCeEEEEeCCCCcEEEEEe
Q psy952          173 DDIAWPNALTLDYFTERLYWADA--HLDYIASVDLDGKHKHIVIS  215 (573)
Q Consensus       173 ~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~l~~  215 (573)
                      . .......++.+.+..||++..  +...|+.++++|...+.+..
T Consensus       369 ~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~  412 (428)
T PRK01029        369 S-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI  412 (428)
T ss_pred             C-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            2 223456778877888887644  34579999999877766654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.99  E-value=0.0022  Score=65.41  Aligned_cols=193  Identities=20%  Similarity=0.212  Sum_probs=100.1

Q ss_pred             CCCEEEEE-e-cccEEEEEcCCCceeecccCCcceEEEEEEc--CCCE---EEEEECCC--Ce--EEEEEcCCCcceEE-
Q psy952           15 IKPWLIFS-N-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHY--KENR---FYFADVAA--KT--IYRSRVGSTEKERV-   82 (573)
Q Consensus        15 ~~~~l~~s-~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~--~~~~---ly~~d~~~--~~--I~~~~~~g~~~~~i-   82 (573)
                      +...|+++ + ...++.++|+|..+..+..+--+-+.|.|+.  .+++   +..++...  ++  |++++.+....+.+ 
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~  145 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT  145 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence            33444444 3 4679999999987655432222222333321  2222   24445432  33  45555432222222 


Q ss_pred             -----EcCCCCCcceeEEee--cCCcEEEE-eCCCCeEEEEEcC----CCceeEec---cCCCCcceEEEeCCCceEEEE
Q psy952           83 -----IRHDSHGLEGLAVDW--VGRKLYWL-DRHSKQLDVAELD----GTNRKTLK---TAIQDPRGITLHPGIGYVYFS  147 (573)
Q Consensus        83 -----~~~~~~~p~glavD~--~~~~LY~t-d~~~~~I~~~~ld----g~~~~~l~---~~~~~P~~Iavdp~~g~LYwt  147 (573)
                           +...+..|.||++-.  ..+.+|.. ....+.++...|.    |.....++   .....|.|+++|...|+||+.
T Consensus       146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvg  225 (381)
T PF02333_consen  146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVG  225 (381)
T ss_dssp             BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEE
T ss_pred             CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEe
Confidence                 223456788999853  45666654 3344677665552    33222333   233579999999999999999


Q ss_pred             ecCCcCeEEEEecc---CCCcEEEEe-cCCCC-CCCceEEEecc---CCeEEEEeCCCCeEEEEeCCCCc
Q psy952          148 SWNLQAYIGKIGMD---GSNFTRILT-HEDDI-AWPNALTLDYF---TERLYWADAHLDYIASVDLDGKH  209 (573)
Q Consensus       148 d~~~~~~I~r~~ld---G~~~~~l~~-~~~~l-~~P~glaiD~~---~~~LYw~D~~~~~I~~~~~dG~~  209 (573)
                      +  ....|++...+   +..++.+.. ....| .-..||+|-+.   .++|.+++.+.+....++..+.+
T Consensus       226 E--E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~  293 (381)
T PF02333_consen  226 E--EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN  293 (381)
T ss_dssp             E--TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred             c--CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence            9  35689999887   333443321 01223 23468888532   35677777777776666666543

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4499|consensus

Probab=97.96  E-value=0.003  Score=58.84  Aligned_cols=118  Identities=19%  Similarity=0.176  Sum_probs=79.4

Q ss_pred             EcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-----CCCcEEEEec----CCCCCCCceEEEecc
Q psy952          116 ELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-----GSNFTRILTH----EDDIAWPNALTLDYF  186 (573)
Q Consensus       116 ~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-----G~~~~~l~~~----~~~l~~P~glaiD~~  186 (573)
                      .+-|..++.+...+.-|+||+-|.....+|++|. .+..|...+.|     -+++++|+..    ...-..|.|++|| .
T Consensus       144 ~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs-ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-~  221 (310)
T KOG4499|consen  144 WLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS-LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-T  221 (310)
T ss_pred             eccCCCceeeehhccCCccccccccCcEEEEEcc-CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-c
Confidence            3445555566667777999999999999999995 35667555533     2456676642    1234568999999 5


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC---CeEEEec
Q psy952          187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE---DHIYWTD  236 (573)
Q Consensus       187 ~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~---~~lywtd  236 (573)
                      ++.||+|-+..++|.++++....+-.-+.-. .++..+.++-+   +.+|+|-
T Consensus       222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             CCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecCCCccEEEEEe
Confidence            9999999999999999998755542222211 34455666543   3467764

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.95  E-value=0.0015  Score=67.11  Aligned_cols=160  Identities=15%  Similarity=0.096  Sum_probs=100.4

Q ss_pred             CCCcceeEEeecCCcEEEEeCCC-------------CeEEEEE--------cCCCceeEeccCCCCcceEEEeCCCceEE
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRHS-------------KQLDVAE--------LDGTNRKTLKTAIQDPRGITLHPGIGYVY  145 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~~-------------~~I~~~~--------ldg~~~~~l~~~~~~P~~Iavdp~~g~LY  145 (573)
                      .+.-..|++++.+ +||++-...             ++|.+.+        .++...++...++.+|.|++++|.+|.||
T Consensus       176 ~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw  254 (399)
T COG2133         176 HHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALW  254 (399)
T ss_pred             CcCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEE
Confidence            3455679999876 999985333             3444433        44445455556889999999999999999


Q ss_pred             EEecCC---cC-----eE-----------E-------EEeccCCCcEEEEe---cCCCCCCCceEEEeccC------CeE
Q psy952          146 FSSWNL---QA-----YI-----------G-------KIGMDGSNFTRILT---HEDDIAWPNALTLDYFT------ERL  190 (573)
Q Consensus       146 wtd~~~---~~-----~I-----------~-------r~~ldG~~~~~l~~---~~~~l~~P~glaiD~~~------~~L  190 (573)
                      .++.+.   .+     .|           +       +..+++.....++.   .......|.||++-.-+      +.|
T Consensus       255 ~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~l  334 (399)
T COG2133         255 TTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDL  334 (399)
T ss_pred             EEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcE
Confidence            999764   11     11           1       11112111111110   01122346788886222      689


Q ss_pred             EEEeCCCCeEEEEeCCCCcEEE---EEeCCccceeEEEee-eCCeEEEecCC-CCceEEEec
Q psy952          191 YWADAHLDYIASVDLDGKHKHI---VISGQKVPHVFALTL-FEDHIYWTDWN-TKSINRADK  247 (573)
Q Consensus       191 Yw~D~~~~~I~~~~~dG~~~~~---l~~~~~~~~p~~ia~-~~~~lywtd~~-~~~I~~~~~  247 (573)
                      |++.-+.-.+.+.+++|..+.+   ++....-.+|.+|++ .++.||+++-. +++|+|+..
T Consensus       335 fV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~  396 (399)
T COG2133         335 FVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGDGRILRVSY  396 (399)
T ss_pred             EEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCCCeEEEecC
Confidence            9988777778889999974322   233211358999998 46788888665 779999863

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.88  E-value=0.0031  Score=67.06  Aligned_cols=189  Identities=13%  Similarity=0.091  Sum_probs=118.9

Q ss_pred             CCEEEEEECCC----CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC--CCeEEEEEcCCCceeEeccCC
Q psy952           56 ENRFYFADVAA----KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH--SKQLDVAELDGTNRKTLKTAI  129 (573)
Q Consensus        56 ~~~ly~~d~~~----~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~--~~~I~~~~ldg~~~~~l~~~~  129 (573)
                      +.-.|++....    ..|+.++.+|.....+.... .....+++.+.+++|+++...  ...|++.++.+...+.+....
T Consensus       169 ~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~-~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~  247 (429)
T PRK01742        169 TRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS-QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR  247 (429)
T ss_pred             CEEEEEEEEcCCCceEEEEEECCCCCCceEeccCC-CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC
Confidence            33446665432    47888889988766554322 456778888888888887533  357999999876655554221


Q ss_pred             CCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC--CCCeEEEEeCC
Q psy952          130 QDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA--HLDYIASVDLD  206 (573)
Q Consensus       130 ~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~~d  206 (573)
                      ..-..+++.|...+|+++.. .....|+..++++...+.+.   ..-......++.+++.+|+++..  +.-.|+.++.+
T Consensus       248 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~  324 (429)
T PRK01742        248 GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT---SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS  324 (429)
T ss_pred             CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec---cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence            22346789998788888743 22457899998877665554   22223456788888888887643  34478888888


Q ss_pred             CCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcce
Q psy952          207 GKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDY  253 (573)
Q Consensus       207 G~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~  253 (573)
                      +...+.+ ...  .....+..++.+|+++..  ..|.+.+..+|..+
T Consensus       325 ~~~~~~l-~~~--~~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~  366 (429)
T PRK01742        325 GGGASLV-GGR--GYSAQISADGKTLVMING--DNVVKQDLTSGSTE  366 (429)
T ss_pred             CCCeEEe-cCC--CCCccCCCCCCEEEEEcC--CCEEEEECCCCCeE
Confidence            8766554 221  111123335667766643  45666776666543

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.74  E-value=0.023  Score=54.97  Aligned_cols=217  Identities=12%  Similarity=0.115  Sum_probs=120.4

Q ss_pred             CCCEEEEEe-cccEEEEEcCCCceeecccC--C-cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           15 IKPWLIFSN-KYYVRNMSLDATQYSLVHQD--L-LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        15 ~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~--~-~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      .+.++++++ ...|+.+++.......+...  . +...++  +..++.+|++|...+ +..+++.....-++ ......|
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddg-fLivdvsdpssP~l-agrya~~  170 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDG-FLIVDVSDPSSPQL-AGRYALP  170 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCc-EEEEECCCCCCcee-eeeeccC
Confidence            345777776 35677777764432222111  1 233444  445899999998765 44455543322222 2222233


Q ss_pred             ----ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCC---CcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           91 ----EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQ---DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        91 ----~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~---~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                          +.++|  .++.-|++....| +...+.......+|+....   ..+++.+.  ..+.|.++..  ..+.-.+.++.
T Consensus       171 ~~d~~~v~I--SGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vs--dnr~y~vvy~--egvlivd~s~~  243 (370)
T COG5276         171 GGDTHDVAI--SGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVS--DNRAYLVVYD--EGVLIVDVSGP  243 (370)
T ss_pred             CCCceeEEE--ecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEec--CCeeEEEEcc--cceEEEecCCC
Confidence                34566  4788999986544 5566666655566663221   23444444  4677877753  23555566666


Q ss_pred             CcEEEEecCCCCCCCceE-EEeccCCeEEEEeCCCC--eEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCC
Q psy952          164 NFTRILTHEDDIAWPNAL-TLDYFTERLYWADAHLD--YIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTK  240 (573)
Q Consensus       164 ~~~~l~~~~~~l~~P~gl-aiD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~  240 (573)
                      ...+++. .-.-..|.++ ++-..+++.|++|...+  .|-..+..+....--.... -.+..||.++++++|++|..++
T Consensus       244 ssp~~~g-syet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~-g~~a~gi~ay~~y~yiadkn~g  321 (370)
T COG5276         244 SSPTVFG-SYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTA-GYQAAGIRAYGNYNYIADKNTG  321 (370)
T ss_pred             CCceEee-ccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCC-CccccceEEecCeeEeccCCce
Confidence            5445442 2233445444 23345899999997654  2333333332221111111 2367899999999999998877


Q ss_pred             ceEE
Q psy952          241 SINR  244 (573)
Q Consensus       241 ~I~~  244 (573)
                      .|.-
T Consensus       322 ~vV~  325 (370)
T COG5276         322 AVVD  325 (370)
T ss_pred             EEEe
Confidence            7643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.74  E-value=0.032  Score=53.98  Aligned_cols=180  Identities=18%  Similarity=0.176  Sum_probs=111.1

Q ss_pred             CEEEEEec----ccEEEEEcCCCce--eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           17 PWLIFSNK----YYVRNMSLDATQY--SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        17 ~~l~~s~~----~~I~~i~l~g~~~--~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      ..|+-+..    ..|+++++...++  ...++.--...||++-  +++||..-+..+..++++.+.-....-+.-. ..-
T Consensus        56 g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EG  132 (264)
T PF05096_consen   56 GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEG  132 (264)
T ss_dssp             TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS-
T ss_pred             CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEecC-Ccc
Confidence            35555553    5899999986654  2334444457888887  8899999999999999999753322112211 467


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEec-c----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLK-T----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~-~----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      .||+.|  +..||.+|. ..+|...++..-. .+.+. .    .+..-+-|..-  +|.||---|. ...|.++++.-..
T Consensus       133 WGLt~d--g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~-td~I~~Idp~tG~  206 (264)
T PF05096_consen  133 WGLTSD--GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQ-TDRIVRIDPETGK  206 (264)
T ss_dssp             -EEEEC--SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETT-SSEEEEEETTT-B
T ss_pred             eEEEcC--CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCC-CCeEEEEeCCCCe
Confidence            899976  778999985 5689988876432 22221 1    22233344443  6888766664 7789999987665


Q ss_pred             cEEEEec--------CC-----CCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952          165 FTRILTH--------ED-----DIAWPNALTLDYFTERLYWADAHLDYIASVDL  205 (573)
Q Consensus       165 ~~~l~~~--------~~-----~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~  205 (573)
                      ....+..        ..     ....-||||.|+..++||++--.=.+++.+.+
T Consensus       207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l  260 (264)
T PF05096_consen  207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL  260 (264)
T ss_dssp             EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred             EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence            5555430        00     12234899999999999998766677777654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=97.69  E-value=0.021  Score=53.94  Aligned_cols=240  Identities=16%  Similarity=0.179  Sum_probs=124.4

Q ss_pred             CCCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcC--CCEEEE---EECCCCeEEEEEcCCC--cceE----
Q psy952           15 IKPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYK--ENRFYF---ADVAAKTIYRSRVGST--EKER----   81 (573)
Q Consensus        15 ~~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~--~~~ly~---~d~~~~~I~~~~~~g~--~~~~----   81 (573)
                      |+..++++.  ...+++++|+|.++..+..+--+-+.|-|+..  .+.|=+   +|.....|..+.+++.  ..+.    
T Consensus        65 P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~sitD~  144 (364)
T COG4247          65 PDKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESITDS  144 (364)
T ss_pred             cCcceEEEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeeccCC
Confidence            444455544  35788999999876544332222222222211  111211   2333445555444442  2222    


Q ss_pred             --EEcCCCCCcceeEEee--cCCcE--EEEeCCCCeEEEEEc----CCCceeEeccCC---CCcceEEEeCCCceEEEEe
Q psy952           82 --VIRHDSHGLEGLAVDW--VGRKL--YWLDRHSKQLDVAEL----DGTNRKTLKTAI---QDPRGITLHPGIGYVYFSS  148 (573)
Q Consensus        82 --i~~~~~~~p~glavD~--~~~~L--Y~td~~~~~I~~~~l----dg~~~~~l~~~~---~~P~~Iavdp~~g~LYwtd  148 (573)
                        ..++++..|.||++-.  .++-.  |+++ ..+.|..+.|    +|.....++..+   ....|++.|-+.|.||+++
T Consensus       145 n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIae  223 (364)
T COG4247         145 NAPYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAE  223 (364)
T ss_pred             CCccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEee
Confidence              2344577899999853  33333  3444 3467766665    233333344322   3478999999999999998


Q ss_pred             cCCcCeEEEEecc---CCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-CccceeEE
Q psy952          149 WNLQAYIGKIGMD---GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFA  224 (573)
Q Consensus       149 ~~~~~~I~r~~ld---G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~~~~~p~~  224 (573)
                        ..-.|++...+   |...+.|-    .+..-..|+-|..+=.||+...+.+.+.. ...|.+....+.. ......-+
T Consensus       224 --EdvaiWK~~Aep~~G~~g~~id----r~~d~~~LtdDvEGltiYy~pnGkGYL~a-SSQGnNtya~y~ReG~N~YVgs  296 (364)
T COG4247         224 --EDVAIWKYEAEPNRGNTGRLID----RIKDLSYLTDDVEGLTIYYGPNGKGYLLA-SSQGNNTYAAYTREGNNDYVGS  296 (364)
T ss_pred             --ccceeeecccCCCCCCccchhh----hhcCchhhcccccccEEEEcCCCcEEEEE-ecCCCceEEEEEeeCCCceEEE
Confidence              35578887765   33333322    22222456666666778887766665433 3345444433331 10111111


Q ss_pred             EeeeCCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeeec
Q psy952          225 LTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP  271 (573)
Q Consensus       225 ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~  271 (573)
                      ..+-         .++.|-.+...+|..+.-+..+...||++-|-+.
T Consensus       297 F~vt---------~n~~iDg~setDG~DV~~~~LGa~~p~G~FVaQD  334 (364)
T COG4247         297 FGVT---------NNGAIDGVSETDGADVVNVPLGANFPFGLFVAQD  334 (364)
T ss_pred             Eeec---------cCCccccccccCCcceeccccCCCCcceeEEecc
Confidence            2211         1244555555566666555556677888776553

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.68  E-value=0.0024  Score=65.57  Aligned_cols=160  Identities=16%  Similarity=0.143  Sum_probs=101.1

Q ss_pred             CcceEEEEEEcCCCEEEEEECCC-------------CeEEEEEcCCC-------cceEEEcCCCCCcceeEEeecCCcEE
Q psy952           44 LLNVVAMDFHYKENRFYFADVAA-------------KTIYRSRVGST-------EKERVIRHDSHGLEGLAVDWVGRKLY  103 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~-------------~~I~~~~~~g~-------~~~~i~~~~~~~p~glavD~~~~~LY  103 (573)
                      .++-..|+|++.+ +||++--..             ++|.+++.++.       ....|.+.++..|.||++++.++.||
T Consensus       176 ~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw  254 (399)
T COG2133         176 HHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALW  254 (399)
T ss_pred             CcCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEE
Confidence            4456689999866 999974322             56666665553       12336667889999999999999999


Q ss_pred             EEeCCCCeE------EEE---------------EcCCC------ceeEecc------CCCCcceEEEeCC------CceE
Q psy952          104 WLDRHSKQL------DVA---------------ELDGT------NRKTLKT------AIQDPRGITLHPG------IGYV  144 (573)
Q Consensus       104 ~td~~~~~I------~~~---------------~ldg~------~~~~l~~------~~~~P~~Iavdp~------~g~L  144 (573)
                      .++.+...+      .+.               +.+|.      ....++.      .-.-|.||++-.-      ++.|
T Consensus       255 ~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~l  334 (399)
T COG2133         255 TTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDL  334 (399)
T ss_pred             EEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcE
Confidence            999766222      111               01111      1111111      1122688888742      2678


Q ss_pred             EEEecCCcCeEEEEeccCCCc---EEEEecCCCCCCCceEEEeccCCeEEEEeCC-CCeEEEEeCCC
Q psy952          145 YFSSWNLQAYIGKIGMDGSNF---TRILTHEDDIAWPNALTLDYFTERLYWADAH-LDYIASVDLDG  207 (573)
Q Consensus       145 Ywtd~~~~~~I~r~~ldG~~~---~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~-~~~I~~~~~dG  207 (573)
                      |++..+. ..+.+...+|..+   +.++. ...-..|.++++.+ ++-||+++.. .++|+|+.+.+
T Consensus       335 fV~~hgs-w~~~~~~~~g~~~~~~~~fl~-~d~~gR~~dV~v~~-DGallv~~D~~~g~i~Rv~~~~  398 (399)
T COG2133         335 FVGAHGS-WPVLRLRPDGNYKVVLTGFLS-GDLGGRPRDVAVAP-DGALLVLTDQGDGRILRVSYAG  398 (399)
T ss_pred             EEEeecc-eeEEEeccCCCcceEEEEEEe-cCCCCcccceEECC-CCeEEEeecCCCCeEEEecCCC
Confidence            8887553 3577788888833   33441 11225899999995 5666666555 77999998765

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.54  E-value=0.03  Score=57.27  Aligned_cols=172  Identities=15%  Similarity=0.102  Sum_probs=111.7

Q ss_pred             EEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEee
Q psy952           18 WLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDW   97 (573)
Q Consensus        18 ~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~   97 (573)
                      ++.+.++...+.+...+.- .+.+..-..+.-.-+-...+.+.+.......|..++.+|+..+.+ ..+++.+..|+++.
T Consensus       334 ~ia~VSRGkaFi~~~~~~~-~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~  411 (668)
T COG4946         334 YIALVSRGKAFIMRPWDGY-SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSP  411 (668)
T ss_pred             EEEEEecCcEEEECCCCCe-eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcC
Confidence            3444445555555544332 222211112332233333445666666666899999988876654 45789999999998


Q ss_pred             cCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCC--cCeEEEEeccCCCcEEEEecCCC
Q psy952           98 VGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNL--QAYIGKIGMDGSNFTRILTHEDD  174 (573)
Q Consensus        98 ~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~--~~~I~r~~ldG~~~~~l~~~~~~  174 (573)
                      .+..+-+++ .+..|++++++....+.+- +.-.-..+++++|..++|-++-...  ...|...+|+|...-.+.   +.
T Consensus       412 dGK~~vvaN-dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT---T~  487 (668)
T COG4946         412 DGKKVVVAN-DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT---TP  487 (668)
T ss_pred             CCcEEEEEc-CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec---CC
Confidence            777788887 4568999999988877665 3334478888999877776664321  457889999987654444   33


Q ss_pred             CCCCceEEEeccCCeEEEEeC
Q psy952          175 IAWPNALTLDYFTERLYWADA  195 (573)
Q Consensus       175 l~~P~glaiD~~~~~LYw~D~  195 (573)
                      -..-.+-|+|+++..||+-..
T Consensus       488 ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         488 TAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             cccccCcccCCCCcEEEEEec
Confidence            333445689999999999653

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.54  E-value=0.013  Score=60.00  Aligned_cols=194  Identities=19%  Similarity=0.240  Sum_probs=102.8

Q ss_pred             EEEEE---cCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEee---cCC----cEEEEeCC--CCeEEEEE
Q psy952           49 AMDFH---YKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDW---VGR----KLYWLDRH--SKQLDVAE  116 (573)
Q Consensus        49 ~v~~d---~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~---~~~----~LY~td~~--~~~I~~~~  116 (573)
                      +|-++   +....|+-++.. +-++.++|+|.....+-   ..+++.+.+-.   +++    .+..++..  .++|.++.
T Consensus        58 AIWvnp~dp~kSlIigTdK~-~GL~VYdL~Gk~lq~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~  133 (381)
T PF02333_consen   58 AIWVNPADPAKSLIIGTDKK-GGLYVYDLDGKELQSLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR  133 (381)
T ss_dssp             EEE--SS-GGG-EEEEEETT-TEEEEEETTS-EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred             cEecCCCCcccceEEEEeCC-CCEEEEcCCCcEEEeec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence            44444   334455556654 46889999998766442   23555444321   112    23455543  35666655


Q ss_pred             cCCC--ceeEe-------ccCCCCcceEEE--eCCCceEEEEecCCcCeEEEEec--cCCC--cEEEEecCCCCCCCceE
Q psy952          117 LDGT--NRKTL-------KTAIQDPRGITL--HPGIGYVYFSSWNLQAYIGKIGM--DGSN--FTRILTHEDDIAWPNAL  181 (573)
Q Consensus       117 ldg~--~~~~l-------~~~~~~P~~Iav--dp~~g~LYwtd~~~~~~I~r~~l--dG~~--~~~l~~~~~~l~~P~gl  181 (573)
                      +++.  ..+.+       .+.+..|+||++  ++..|.+|..-.+..+.++...|  ++..  .-.++.....-..|.|+
T Consensus       134 id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGC  213 (381)
T PF02333_consen  134 IDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGC  213 (381)
T ss_dssp             EETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEE
T ss_pred             ecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEE
Confidence            5532  22222       235566999998  45567666554334455554444  3432  22233112233468899


Q ss_pred             EEeccCCeEEEEeCCCCeEEEEeCC---CCcEEEEEe--CC-ccceeEEEeee-----CCeEEEecCCCCceEEEec
Q psy952          182 TLDYFTERLYWADAHLDYIASVDLD---GKHKHIVIS--GQ-KVPHVFALTLF-----EDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       182 aiD~~~~~LYw~D~~~~~I~~~~~d---G~~~~~l~~--~~-~~~~p~~ia~~-----~~~lywtd~~~~~I~~~~~  247 (573)
                      ++|...++||+++... -|++++.+   +..++.+..  +. .....-||+++     .++|.+++.+.++....+.
T Consensus       214 VVDDe~g~LYvgEE~~-GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  214 VVDDETGRLYVGEEDV-GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             EEETTTTEEEEEETTT-EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             EEecccCCEEEecCcc-EEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence            9999999999999764 68998876   344555533  21 23567899985     2579999988887666654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.49  E-value=0.0039  Score=67.13  Aligned_cols=182  Identities=8%  Similarity=-0.002  Sum_probs=104.0

Q ss_pred             CCEEEEEECCCCeEEEEEcCCCcceEEEc-CCCCCcceeEEe--ecCCc-----------------EEEEeCCCCeEEEE
Q psy952           56 ENRFYFADVAAKTIYRSRVGSTEKERVIR-HDSHGLEGLAVD--WVGRK-----------------LYWLDRHSKQLDVA  115 (573)
Q Consensus        56 ~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-~~~~~p~glavD--~~~~~-----------------LY~td~~~~~I~~~  115 (573)
                      ..+||+-|..+.+|-|++++--....|+. .+.....|+.+.  +.+++                 |+.+....+.+.++
T Consensus       141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI  220 (635)
T PRK02888        141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV  220 (635)
T ss_pred             eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence            67899999999999999998754444443 344566666665  23333                 33333334556666


Q ss_pred             EcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC--cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952          116 ELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL--QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       116 ~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~--~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~  193 (573)
                      +.+...+..-+.-..+|+.++++|..+++|+|....  ...+..++..-....+++      .++...++-..++..|+.
T Consensus       221 D~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf------ni~~iea~vkdGK~~~V~  294 (635)
T PRK02888        221 DAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF------NIARIEEAVKAGKFKTIG  294 (635)
T ss_pred             ECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE------chHHHHHhhhCCCEEEEC
Confidence            555322211111223799999999999999996322  223333322211111222      222212222245566652


Q ss_pred             eCCCCeEEEEeCCC-----CcE-EEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccC
Q psy952          194 DAHLDYIASVDLDG-----KHK-HIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       194 D~~~~~I~~~~~dG-----~~~-~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~  249 (573)
                         .++|..++...     ... ..|..+   ..|.||++  ++.++|++...+..|..++...
T Consensus       295 ---gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k  352 (635)
T PRK02888        295 ---GSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK  352 (635)
T ss_pred             ---CCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence               46677776543     222 223333   36777776  6789999999999998887543

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.48  E-value=0.018  Score=60.57  Aligned_cols=225  Identities=13%  Similarity=0.109  Sum_probs=123.4

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC---CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCc
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA---KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK  101 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~---~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~  101 (573)
                      ..|+..+-+|.+...+.........-++-+...+|.+.....   .+|+.++++.+....++... ..-...++-+.+++
T Consensus       173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~  251 (425)
T COG0823         173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSK  251 (425)
T ss_pred             ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-CccCCccCCCCCCE
Confidence            455666666655544444333344445555566655554432   35888899887777666533 22233455556777


Q ss_pred             EEEEeCCC--CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEE-ecCCcCeEEEEeccCCCcEEEEecCCCCCCC
Q psy952          102 LYWLDRHS--KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFS-SWNLQAYIGKIGMDGSNFTRILTHEDDIAWP  178 (573)
Q Consensus       102 LY~td~~~--~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwt-d~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P  178 (573)
                      |.++-...  -.|++++++++....|......=..=.+.|...+|+++ |.+..+.|++++++|+..+.+.   ......
T Consensus       252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT---~~~~~~  328 (425)
T COG0823         252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT---FSGGGN  328 (425)
T ss_pred             EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee---ccCCCC
Confidence            77766443  47999999998866644322111133456666777666 4445779999999999876655   222222


Q ss_pred             ceEEEeccCCeEEEEeCCCCe--EEEEeCCCCc-EEEEEeCCccceeEEEeeeCCe-EEEecCCCCceEEEeccCCcceE
Q psy952          179 NALTLDYFTERLYWADAHLDY--IASVDLDGKH-KHIVISGQKVPHVFALTLFEDH-IYWTDWNTKSINRADKFNGRDYR  254 (573)
Q Consensus       179 ~glaiD~~~~~LYw~D~~~~~--I~~~~~dG~~-~~~l~~~~~~~~p~~ia~~~~~-lywtd~~~~~I~~~~~~~g~~~~  254 (573)
                      .--.+.+++.+|-+.....+.  |...++.... .+.+.... ...+-..+..+.. +|.+....+.+...-..+|....
T Consensus       329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~-~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~  407 (425)
T COG0823         329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY-LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR  407 (425)
T ss_pred             cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc-cCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence            233455566666665543343  5555543222 33333332 3334444444443 34444444554444344555443

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.44  E-value=0.015  Score=62.65  Aligned_cols=194  Identities=12%  Similarity=0.077  Sum_probs=115.1

Q ss_pred             cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC---------------------------------------
Q psy952           26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA---------------------------------------   66 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~---------------------------------------   66 (573)
                      .+..|+.+.......+..-.+|..+++++.++.+|++..+.                                       
T Consensus       216 ~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g  295 (635)
T PRK02888        216 LFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG  295 (635)
T ss_pred             EEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence            44555555433322222234788889999888888885211                                       


Q ss_pred             CeEEEEEcCC-----CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc---------eeEec---cCC
Q psy952           67 KTIYRSRVGS-----TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN---------RKTLK---TAI  129 (573)
Q Consensus        67 ~~I~~~~~~g-----~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~---------~~~l~---~~~  129 (573)
                      +++..++...     ......+..+ .+|.||++.+.+++||++....+.|.++++....         +.+++   .-.
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            2233333222     1122223333 6999999999999999999999999999986522         12233   234


Q ss_pred             CCcceEEEeCCCceEEEEecCCcCeEEEEecc-------CCCcEEEEecCCC------CCCCceEEEeccCCeEEEEeCC
Q psy952          130 QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-------GSNFTRILTHEDD------IAWPNALTLDYFTERLYWADAH  196 (573)
Q Consensus       130 ~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-------G~~~~~l~~~~~~------l~~P~glaiD~~~~~LYw~D~~  196 (573)
                      ..|...++|+ +|+.|.|-.- .+.|.+-+++       |.....++.....      +..+.|=+.++++++|+...-.
T Consensus       375 lGPLHTaFDg-~G~aytslf~-dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~  452 (635)
T PRK02888        375 LGPLHTAFDG-RGNAYTTLFL-DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF  452 (635)
T ss_pred             CCcceEEECC-CCCEEEeEee-cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc
Confidence            4699999998 5789888643 4566666655       3332233321112      2233444557777777665432


Q ss_pred             C------------CeEEEEeCCCCcEEEEEeCCcccee
Q psy952          197 L------------DYIASVDLDGKHKHIVISGQKVPHV  222 (573)
Q Consensus       197 ~------------~~I~~~~~dG~~~~~l~~~~~~~~p  222 (573)
                      .            ..-..+++.|...++|.....++.|
T Consensus       453 skdrfl~vgpl~pen~qlidIsgdkM~lv~d~p~~~EP  490 (635)
T PRK02888        453 SKDRFLPVGPLHPENDQLIDISGDKMKLVHDGPTFAEP  490 (635)
T ss_pred             ccccccCCCCCCCCcceeEEccCCeeEEEecCCCCCCC
Confidence            1            1345567788888887765434555

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.43  E-value=0.021  Score=58.32  Aligned_cols=129  Identities=14%  Similarity=0.120  Sum_probs=92.7

Q ss_pred             EEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceE
Q psy952          102 LYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNAL  181 (573)
Q Consensus       102 LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~gl  181 (573)
                      +-+.......|.+.+.+|...+.+..++.+..++++++...++-+++  ....|+.++++..+.+.+-  .+.-....++
T Consensus       374 ~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN--dr~el~vididngnv~~id--kS~~~lItdf  449 (668)
T COG4946         374 DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN--DRFELWVIDIDNGNVRLID--KSEYGLITDF  449 (668)
T ss_pred             eEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc--CceEEEEEEecCCCeeEec--ccccceeEEE
Confidence            33444455689999999999999999999999999999777788887  4678999999988877765  3444445677


Q ss_pred             EEeccCCeEEEEeC---CCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEec
Q psy952          182 TLDYFTERLYWADA---HLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTD  236 (573)
Q Consensus       182 aiD~~~~~LYw~D~---~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd  236 (573)
                      ++.+...+|-++=.   ....|..++++|....-+.+.  ..+-++-|+  ++.+||+--
T Consensus       450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             EEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCCCCcEEEEEe
Confidence            77766666644422   245788899998766554443  345566665  456788753

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.32  E-value=0.18  Score=48.85  Aligned_cols=196  Identities=13%  Similarity=0.047  Sum_probs=120.6

Q ss_pred             cCCcceEEEEEEcCCCEEEEEECCCC--eEEEEEcCCCcce-EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC
Q psy952           42 QDLLNVVAMDFHYKENRFYFADVAAK--TIYRSRVGSTEKE-RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD  118 (573)
Q Consensus        42 ~~~~~~~~v~~d~~~~~ly~~d~~~~--~I~~~~~~g~~~~-~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld  118 (573)
                      .......|+.|+ .++.||-+.-..+  +|++++++++... ..--..-..-+||++  .+++||..-...+...+.+.+
T Consensus        42 d~~aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~--~~d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   42 DPTAFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI--LGDKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             -TT-EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE--ETTEEEEEESSSSEEEEEETT
T ss_pred             CCcccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE--ECCEEEEEEecCCeEEEEccc
Confidence            344456799995 3789999876544  8999999876432 222222246788888  489999999989999999987


Q ss_pred             CCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc-EEE-Ee-cCCCCCCCceEEEeccCCeEEEEeC
Q psy952          119 GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF-TRI-LT-HEDDIAWPNALTLDYFTERLYWADA  195 (573)
Q Consensus       119 g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~-~~l-~~-~~~~l~~P~glaiD~~~~~LYw~D~  195 (573)
                      .-....-++-.....||+-|  ...||.+|.  ..+|+..+...-.. +.+ |. ....+..-|-|..  .++.||---+
T Consensus       119 tl~~~~~~~y~~EGWGLt~d--g~~Li~SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~--i~G~IyANVW  192 (264)
T PF05096_consen  119 TLKKIGTFPYPGEGWGLTSD--GKRLIMSDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY--INGKIYANVW  192 (264)
T ss_dssp             TTEEEEEEE-SSS--EEEEC--SSCEEEE-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE--ETTEEEEEET
T ss_pred             cceEEEEEecCCcceEEEcC--CCEEEEECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEE--EcCEEEEEeC
Confidence            54332222223467899976  568999994  56788777653222 211 21 0111223344554  4899999999


Q ss_pred             CCCeEEEEeCCCCcEEEEEeCCc--------------cceeEEEeee--CCeEEEecCCCCceEEEe
Q psy952          196 HLDYIASVDLDGKHKHIVISGQK--------------VPHVFALTLF--EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       196 ~~~~I~~~~~dG~~~~~l~~~~~--------------~~~p~~ia~~--~~~lywtd~~~~~I~~~~  246 (573)
                      ..+.|.++++..+.+.-++.-..              ..-..|||.+  .+++|+|--.-..++.+.
T Consensus       193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~  259 (264)
T PF05096_consen  193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVK  259 (264)
T ss_dssp             TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEE
T ss_pred             CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEE
Confidence            99999999998777766553100              1235799984  578999966666777664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.27  E-value=0.00018  Score=46.80  Aligned_cols=29  Identities=10%  Similarity=0.082  Sum_probs=24.3

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ++|+|+|++.+   .+++| ||.||.|..|+++
T Consensus         6 GgC~h~C~~~~---g~~~C~C~~Gy~L~~D~~t   35 (36)
T PF14670_consen    6 GGCSHICVNTP---GSYRCSCPPGYKLAEDGRT   35 (36)
T ss_dssp             GGSSSEEEEET---TSEEEE-STTEEE-TTSSS
T ss_pred             CCcCCCCccCC---CceEeECCCCCEECcCCCC
Confidence            79999999998   57999 9999999998764

...

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.18  E-value=0.087  Score=53.75  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=97.7

Q ss_pred             cCCcceEEEEEEcCCCEEEEEECCCCe------EEEEEcCC--C---cce-----EEEcC-C--C----CCcceeEEeec
Q psy952           42 QDLLNVVAMDFHYKENRFYFADVAAKT------IYRSRVGS--T---EKE-----RVIRH-D--S----HGLEGLAVDWV   98 (573)
Q Consensus        42 ~~~~~~~~v~~d~~~~~ly~~d~~~~~------I~~~~~~g--~---~~~-----~i~~~-~--~----~~p~glavD~~   98 (573)
                      ..++...||+|++..+. ||+=...+.      ++++.+..  .   ..+     .+... +  +    ..++||++ ..
T Consensus        17 ~~~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~   94 (326)
T PF13449_consen   17 IPFGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PP   94 (326)
T ss_pred             CccCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ec
Confidence            45667889999975554 444333333      77766654  1   111     01111 1  1    27789999 57


Q ss_pred             CCcEEEEeCCC------CeEEEEEcCCCceeEe-c-cCC-------------CCcceEEEeCCCceEEEEecCC------
Q psy952           99 GRKLYWLDRHS------KQLDVAELDGTNRKTL-K-TAI-------------QDPRGITLHPGIGYVYFSSWNL------  151 (573)
Q Consensus        99 ~~~LY~td~~~------~~I~~~~ldg~~~~~l-~-~~~-------------~~P~~Iavdp~~g~LYwtd~~~------  151 (573)
                      .+.+||++...      ..|.+++++|...+.+ + ..+             ....+||+.|....||.+..+.      
T Consensus        95 ~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   95 DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP  174 (326)
T ss_pred             CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence            89999999988      9999999999886665 2 111             1278999999877688775431      


Q ss_pred             -c-------CeEEEEecc--CCCcEEEEecCC------CCCCCceEEEeccCCeEEEEeCC-------CCeEEEEeCCC
Q psy952          152 -Q-------AYIGKIGMD--GSNFTRILTHED------DIAWPNALTLDYFTERLYWADAH-------LDYIASVDLDG  207 (573)
Q Consensus       152 -~-------~~I~r~~ld--G~~~~~l~~~~~------~l~~P~glaiD~~~~~LYw~D~~-------~~~I~~~~~dG  207 (573)
                       .       .+|.+.+..  |.....++...+      ....+..|+.- .+++||+.+..       ..+|+.+++.+
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvLER~~~~~~~~~~ri~~v~l~~  252 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVLERDFSPGTGNYKRIYRVDLSD  252 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEEEccCCCCccceEEEEEEEccc
Confidence             1       346666654  212222221122      23344444443 36778888765       23677887764

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.14  E-value=0.053  Score=53.39  Aligned_cols=177  Identities=19%  Similarity=0.144  Sum_probs=102.1

Q ss_pred             EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEE----c------CCCceeEe------ccCCCCcceEEEeCCCceEE
Q psy952           82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAE----L------DGTNRKTL------KTAIQDPRGITLHPGIGYVY  145 (573)
Q Consensus        82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~----l------dg~~~~~l------~~~~~~P~~Iavdp~~g~LY  145 (573)
                      +....+.+|-||++.  .++||.+-.  ..|+++.    +      .+..-+..      .++--+...||+  ..+.++
T Consensus        43 ~~~r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~--~~~~l~  116 (335)
T TIGR03032        43 VFERTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL--GAGRLL  116 (335)
T ss_pred             EEeeccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee--cCCcEE
Confidence            333456789999985  688998863  4576661    1      12111111      145556788888  345666


Q ss_pred             EEecCCcCeEEEEeccCCCc----EEEEe--cCCCCCCCceEEEeccCCeEEEEeCCCC---eEEEEe-CCCC------c
Q psy952          146 FSSWNLQAYIGKIGMDGSNF----TRILT--HEDDIAWPNALTLDYFTERLYWADAHLD---YIASVD-LDGK------H  209 (573)
Q Consensus       146 wtd~~~~~~I~r~~ldG~~~----~~l~~--~~~~l~~P~glaiD~~~~~LYw~D~~~~---~I~~~~-~dG~------~  209 (573)
                      +.+. .-+-+-..+.+.+..    ..+++  ..++-=.=||||++ .++--|++--...   .=+|-+ .+|+      .
T Consensus       117 fVNT-~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s  194 (335)
T TIGR03032       117 FVNT-LFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPS  194 (335)
T ss_pred             EEEC-cceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCC
Confidence            6663 234555555554432    22331  01221234899997 3444565532211   111211 1222      1


Q ss_pred             EEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeee
Q psy952          210 KHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVY  269 (573)
Q Consensus       210 ~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~  269 (573)
                      .++++++  +..|.+.-+++++||+.|++++.|.++++.+|+...+ ......|.||...
T Consensus       195 ~evl~~G--LsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~V-a~vpG~~rGL~f~  251 (335)
T TIGR03032       195 GEVVASG--LSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPV-AFLPGFTRGLAFA  251 (335)
T ss_pred             CCEEEcC--ccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEE-EECCCCCccccee
Confidence            2445555  7788999999999999999999999999777865554 3334567776654

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.10  E-value=0.0011  Score=40.74  Aligned_cols=28  Identities=18%  Similarity=0.383  Sum_probs=24.8

Q ss_pred             CCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952          175 IAWPNALTLDYFTERLYWADAHLDYIASV  203 (573)
Q Consensus       175 l~~P~glaiD~~~~~LYw~D~~~~~I~~~  203 (573)
                      +..|.||+++ .++.||++|.++++|..+
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence            4679999999 899999999999998764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.04  E-value=0.33  Score=46.60  Aligned_cols=180  Identities=14%  Similarity=0.148  Sum_probs=100.3

Q ss_pred             CCEEEEEECCCCeEEEEEcC-CCcceEEE-cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEE-cCCCceeEe-cc----
Q psy952           56 ENRFYFADVAAKTIYRSRVG-STEKERVI-RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAE-LDGTNRKTL-KT----  127 (573)
Q Consensus        56 ~~~ly~~d~~~~~I~~~~~~-g~~~~~i~-~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~-ldg~~~~~l-~~----  127 (573)
                      +++||+++ ..+.|+.++.. |...-.+- ...+..+  .++  .++.||+... .++|..++ .+|...-.+ ..    
T Consensus        36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~--~~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~~~~  109 (238)
T PF13360_consen   36 GGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVV--DGGRVYVGTS-DGSLYALDAKTGKVLWSIYLTSSPP  109 (238)
T ss_dssp             TTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEE--ETTEEEEEET-TSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred             CCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eee--cccccccccc-eeeeEecccCCcceeeeeccccccc
Confidence            77888874 55678888874 43221111 1111122  123  4788888874 34888888 456555442 21    


Q ss_pred             -CCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-CCCcEEEEecCCCCCC--------CceEEEeccCCeEEEEeCCC
Q psy952          128 -AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GSNFTRILTHEDDIAW--------PNALTLDYFTERLYWADAHL  197 (573)
Q Consensus       128 -~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~~~~~l~~~~~~l~~--------P~glaiD~~~~~LYw~D~~~  197 (573)
                       .+..+...+++  .+.+|+...  ...|..+++. |...-...........        ...+.++  +++||++....
T Consensus       110 ~~~~~~~~~~~~--~~~~~~~~~--~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g  183 (238)
T PF13360_consen  110 AGVRSSSSPAVD--GDRLYVGTS--SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DGRVYVSSGDG  183 (238)
T ss_dssp             CSTB--SEEEEE--TTEEEEEET--CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TTEEEEECCTS
T ss_pred             cccccccCceEe--cCEEEEEec--cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CCEEEEEcCCC
Confidence             12334555555  567777763  4577777754 4322222100000000        1223333  56999987655


Q ss_pred             CeEEEEeCCCCcEEEEEeCCccceeEE-EeeeCCeEEEecCCCCceEEEeccCCcc
Q psy952          198 DYIASVDLDGKHKHIVISGQKVPHVFA-LTLFEDHIYWTDWNTKSINRADKFNGRD  252 (573)
Q Consensus       198 ~~I~~~~~dG~~~~~l~~~~~~~~p~~-ia~~~~~lywtd~~~~~I~~~~~~~g~~  252 (573)
                      . +..++.....+. . ... ...+.+ +...++.||+++ ..+.|+.+++.+|+.
T Consensus       184 ~-~~~~d~~tg~~~-w-~~~-~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  184 R-VVAVDLATGEKL-W-SKP-ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKV  234 (238)
T ss_dssp             S-EEEEETTTTEEE-E-EEC-SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred             e-EEEEECCCCCEE-E-Eec-CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence            4 555577766544 3 322 345555 667889999999 789999999988864

...

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.04  E-value=0.0014  Score=40.20  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=24.8

Q ss_pred             CCCcceeEEeecCCcEEEEeCCCCeEEEE
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVA  115 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~~~~I~~~  115 (573)
                      +..|.|||+| ..++||++|..+++|.++
T Consensus         1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence            3579999999 789999999999999874

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.17  Score=49.15  Aligned_cols=216  Identities=12%  Similarity=0.067  Sum_probs=110.7

Q ss_pred             CEEEEEe-cccEEEEEcCCCceeecccCCcceEE--EEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952           17 PWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVA--MDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL   93 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~--v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl   93 (573)
                      .++++++ .+.+..+++......++......+.+  -++...+++-|++....+ +..+++.....-+++..--..|.--
T Consensus       139 n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~  217 (370)
T COG5276         139 NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTY  217 (370)
T ss_pred             CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceE
Confidence            3556665 45566666654433333222111211  123344788899887765 4445554332223333222233333


Q ss_pred             EEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-c-CCCCcceE---EEeCCCceEEEEecCC-cCeEEEEeccCCCcEE
Q psy952           94 AVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-T-AIQDPRGI---TLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTR  167 (573)
Q Consensus        94 avD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~-~~~~P~~I---avdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~  167 (573)
                      .+-...++.|.++...+ +...+.++....+++ + ...+|.++   +|.  ..+.|+++... -+.|...+..+.....
T Consensus       218 sv~vsdnr~y~vvy~eg-vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~s  294 (370)
T COG5276         218 SVSVSDNRAYLVVYDEG-VLIVDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSS  294 (370)
T ss_pred             EEEecCCeeEEEEcccc-eEEEecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhc
Confidence            33445788999997665 445566665544444 2 44556666   553  57899998532 2334444443333222


Q ss_pred             EEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEe-CCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCce
Q psy952          168 ILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVD-LDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSI  242 (573)
Q Consensus       168 l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I  242 (573)
                      -.  ...-....||.+-  ++.+|++|..++.|.-+. ..-.+.+. .... .....++.+....+|.+||..+..
T Consensus       295 s~--~t~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~m~~~~-g~~t-i~~s~~v~~~~q~~y~~d~~~gl~  364 (370)
T COG5276         295 SL--DTAGYQAAGIRAY--GNYNYIADKNTGAVVDASPPSMMDKRP-GRPT-IGQSCDVSVDTQIIYSTDYNGGLS  364 (370)
T ss_pred             cc--cCCCccccceEEe--cCeeEeccCCceEEEeCCChhhccccc-Ccce-EeeecceEEEeeEEEEeecCCCEE
Confidence            11  1222234577765  899999998776543322 11111100 0000 123345555556899999887654

>KOG0273|consensus

Probab=96.71  E-value=0.92  Score=46.75  Aligned_cols=152  Identities=13%  Similarity=0.105  Sum_probs=100.4

Q ss_pred             CCCceeeCCCCCCEEEEEe-cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE
Q psy952            5 DESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI   83 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~   83 (573)
                      .+.||.+....-.+|..+. ...++.+..+|.....+...-+.+.+|-+...+.+|.=.+.. +.+..++.-.+.....+
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD-~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVD-GTTILWDAHTGTVKQQF  314 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCC-ccEEEEeccCceEEEee
Confidence            4677887775556777665 456777778888766666666668899998766666555544 45555554333333333


Q ss_pred             cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE-eccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEec
Q psy952           84 RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT-LKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGM  160 (573)
Q Consensus        84 ~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~-l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~l  160 (573)
                        .+....+|.|||+++.=|.+-...+.|.|..+++..... +...-....+|-.+| +|.|.-+-.. ..-+|+.+.-
T Consensus       315 --~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~  390 (524)
T KOG0273|consen  315 --EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQ  390 (524)
T ss_pred             --eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCC
Confidence              234555899999999999999999999999998766533 434445578888898 5555555422 1335555433

>KOG0315|consensus

Probab=96.65  E-value=0.63  Score=44.15  Aligned_cols=205  Identities=14%  Similarity=0.092  Sum_probs=117.8

Q ss_pred             CCEEEEEecccEEEEEcCCCceee--cccC-CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcce
Q psy952           16 KPWLIFSNKYYVRNMSLDATQYSL--VHQD-LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEG   92 (573)
Q Consensus        16 ~~~l~~s~~~~I~~i~l~g~~~~~--~~~~-~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~g   92 (573)
                      ..+|..+....|+.+++...+...  .+.+ -+++.+|.|.. .++-.++....+.+...++.......++... .-+..
T Consensus        52 k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~  129 (311)
T KOG0315|consen   52 KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNT  129 (311)
T ss_pred             cchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC-CCcce
Confidence            456666667789999998765422  2233 36789999996 4555556677888888887664433344333 56677


Q ss_pred             eEEeecCCcEEEEeCCCCeEEEEEcCCC-ceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC-CCcEEEE
Q psy952           93 LAVDWVGRKLYWLDRHSKQLDVAELDGT-NRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG-SNFTRIL  169 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~~I~~~~ldg~-~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG-~~~~~l~  169 (573)
                      +.+.+....|+..|. .+.|.+-+|... ....++ +.....+.|+|+|...+|--++  ..+..++-.|-+ .....|.
T Consensus       130 vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n--nkG~cyvW~l~~~~~~s~l~  206 (311)
T KOG0315|consen  130 VVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN--NKGNCYVWRLLNHQTASELE  206 (311)
T ss_pred             EEecCCcceEEeecC-CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec--CCccEEEEEccCCCccccce
Confidence            888888888988885 568999898765 334455 4556688999999544443333  234444443332 2222222


Q ss_pred             ecCCCCCCCc--e--EEEeccCCeEEEEeCCCCeEEEEeCCCC-cEEEEEeCCccceeEEEeee
Q psy952          170 THEDDIAWPN--A--LTLDYFTERLYWADAHLDYIASVDLDGK-HKHIVISGQKVPHVFALTLF  228 (573)
Q Consensus       170 ~~~~~l~~P~--g--laiD~~~~~LYw~D~~~~~I~~~~~dG~-~~~~l~~~~~~~~p~~ia~~  228 (573)
                      - ...+..-+  +  .-+.| +.+...+-+....+...+.++. ..+..+.+. ...--+-++-
T Consensus       207 P-~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS  267 (311)
T KOG0315|consen  207 P-VHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFS  267 (311)
T ss_pred             E-hhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeec
Confidence            0 11222112  2  23333 3444444455566666677776 333334432 2344555553

>KOG0279|consensus

Probab=96.61  E-value=0.73  Score=44.41  Aligned_cols=205  Identities=12%  Similarity=0.048  Sum_probs=131.8

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT  124 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~  124 (573)
                      ..+..++..+ .+..+++-...+.++..++.++.....+...-..+.++||+..++.| ++-+...+|...+.-|...-+
T Consensus        64 H~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t  141 (315)
T KOG0279|consen   64 HFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYT  141 (315)
T ss_pred             eEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEE
Confidence            3466777775 56666676777889999998865544444344688899999765555 677777889888888877777


Q ss_pred             eccC--CCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952          125 LKTA--IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS  202 (573)
Q Consensus       125 l~~~--~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  202 (573)
                      +...  -....-+.+.|.....|+...+....+..-++++-..+.-.  ...-..-+.+++.+ ++.|...-...+.++.
T Consensus       142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~--~gh~~~v~t~~vSp-DGslcasGgkdg~~~L  218 (315)
T KOG0279|consen  142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF--IGHSGYVNTVTVSP-DGSLCASGGKDGEAML  218 (315)
T ss_pred             EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc--ccccccEEEEEECC-CCCEEecCCCCceEEE
Confidence            7654  45578888999765666665454566666677765543322  23334457888885 4556555556677888


Q ss_pred             EeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          203 VDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       203 ~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      -+++-+..  +..-.......++++..++++..-....+|..-+..++..+..|
T Consensus       219 wdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l  270 (315)
T KOG0279|consen  219 WDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL  270 (315)
T ss_pred             EEccCCce--eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence            88874433  22211134556777666665555555556766666666544444

>KOG1446|consensus

Probab=96.57  E-value=0.85  Score=44.63  Aligned_cols=203  Identities=11%  Similarity=0.096  Sum_probs=120.6

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC-CcceEEEcCCCCCcceeEE-eecCCcEEEEeCCCCeEEEEEcC-CC
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS-TEKERVIRHDSHGLEGLAV-DWVGRKLYWLDRHSKQLDVAELD-GT  120 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~i~~~~~~~p~glav-D~~~~~LY~td~~~~~I~~~~ld-g~  120 (573)
                      -..+.+|+|+..+..|.. -.....|+.++... ....+|.... ..+.-+-+ ...+..||=+......|.-.+|. ..
T Consensus        14 ~~~i~sl~fs~~G~~lit-ss~dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLIT-SSEDDSLRLYDSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             CCceeEEEecCCCCEEEE-ecCCCeEEEEEcCCCceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence            456889999965555544 45566788888654 4444443332 23333333 23344455555556788888874 45


Q ss_pred             ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeE
Q psy952          121 NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI  200 (573)
Q Consensus       121 ~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  200 (573)
                      ..+.+...-....+|.+.|.+ -.|.+-. ....|.--++.-.+-+.++    .+..+.-.|+|+ +|.||.+-.+...|
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~-d~FlS~S-~D~tvrLWDlR~~~cqg~l----~~~~~pi~AfDp-~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKD-DTFLSSS-LDKTVRLWDLRVKKCQGLL----NLSGRPIAAFDP-EGLIFALANGSELI  164 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCC-CeEEecc-cCCeEEeeEecCCCCceEE----ecCCCcceeECC-CCcEEEEecCCCeE
Confidence            555555666778999999955 7777763 2445665666555555555    344455678895 56666666666678


Q ss_pred             EEEeCC----CCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          201 ASVDLD----GKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       201 ~~~~~d----G~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      ..+|+.    |......+.......-..|.+  ++..|.++. ..+.|+.++.++|.....+
T Consensus       165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~tf  225 (311)
T KOG1446|consen  165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTVKSTF  225 (311)
T ss_pred             EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEeeeE
Confidence            777753    222332232122345566666  345566665 4566888888888855444

>KOG2397|consensus

Probab=96.56  E-value=0.0022  Score=65.79  Aligned_cols=71  Identities=37%  Similarity=0.550  Sum_probs=58.5

Q ss_pred             ceecCCC-cccCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCC-CccccCCccccCCCCCCCCCCCCCCC
Q psy952          415 EFACRNG-HCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKT-NYRCIPKWLFCDGKDDCRDGSDELPQ  489 (573)
Q Consensus       415 ~f~C~~g-~ci~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~-~~~c~~~~~~Cdg~~dC~d~sDe~~~  489 (573)
                      .|.|.+| .=|+..++-|+.-||.|||||..    +..|..+.|+|.+.+ ...=||.+.+=||+.||-|||||...
T Consensus        44 ~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPG----tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~S  116 (480)
T KOG2397|consen   44 MFKCLDGSKTISFSQLNDDSCDCLDGSDEPG----TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLS  116 (480)
T ss_pred             ceeeccCCcccCHHHhccccccCCCCCCCCc----cccCCCCceeeeecCCCceeeechhccCcccccccCCCCccC
Confidence            7999988 78999999999999999999964    345889999998621 22357778889999999999999644

>KOG0291|consensus

Probab=96.55  E-value=1.6  Score=47.69  Aligned_cols=147  Identities=9%  Similarity=0.014  Sum_probs=97.4

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCce
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNR  122 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~  122 (573)
                      +..+..|+|.+ ++.+..+....++|..++...+--.+.+......+.++.+-. .++..++-+..|+|...++. ..+-
T Consensus       350 ~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNf  427 (893)
T KOG0291|consen  350 SDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNF  427 (893)
T ss_pred             ccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccccee
Confidence            34578899986 677778888889999999876544334444556788888874 55666666777888887774 3444


Q ss_pred             eEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCC
Q psy952          123 KTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAH  196 (573)
Q Consensus       123 ~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~  196 (573)
                      +++. ....+-.-||+||. |.|..+-.-..-.|..-++-.....-++   .+-..| .+|++++.+..|+-+.|.
T Consensus       428 RTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiL---sGHEgPVs~l~f~~~~~~LaS~SWD  499 (893)
T KOG0291|consen  428 RTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDIL---SGHEGPVSGLSFSPDGSLLASGSWD  499 (893)
T ss_pred             eeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehh---cCCCCcceeeEEccccCeEEecccc
Confidence            4444 34445678999994 5555554334557777776543333333   444555 589999888877766553

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.52  E-value=0.22  Score=52.54  Aligned_cols=163  Identities=13%  Similarity=0.106  Sum_probs=96.1

Q ss_pred             EEEEEEcCCCEEEEEEC----CCCeEEEEEcCCCcceEEEcCC--CCCcceeEEeecCCcEEEEe---CCCCeEEEEEcC
Q psy952           48 VAMDFHYKENRFYFADV----AAKTIYRSRVGSTEKERVIRHD--SHGLEGLAVDWVGRKLYWLD---RHSKQLDVAELD  118 (573)
Q Consensus        48 ~~v~~d~~~~~ly~~d~----~~~~I~~~~~~g~~~~~i~~~~--~~~p~glavD~~~~~LY~td---~~~~~I~~~~ld  118 (573)
                      .++........+|++..    ....|+..+.+|.....+....  +..|.   .-+.+..|.+..   ....+|++.+++
T Consensus       150 t~~~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~---ws~~~~~~~y~~f~~~~~~~i~~~~l~  226 (425)
T COG0823         150 TGIKGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPA---WSPDGKKLAYVSFELGGCPRIYYLDLN  226 (425)
T ss_pred             cCCcceecceEEEEeecccCCCCceEEEEccCCcceeEecccCcceeccc---cCcCCCceEEEEEecCCCceEEEEecc
Confidence            34444444556665554    3346777777765444333222  11121   111233332222   222468899998


Q ss_pred             CCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952          119 GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL  197 (573)
Q Consensus       119 g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~  197 (573)
                      ...+.++++-..+-...++.|...+|.++-.. ....|+.+++++.....|.. ...+..  .=.+.+++.+||++....
T Consensus       227 ~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~--~Ps~spdG~~ivf~Sdr~  303 (425)
T COG0823         227 TGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINT--SPSWSPDGSKIVFTSDRG  303 (425)
T ss_pred             CCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCcccc--CccCCCCCCEEEEEeCCC
Confidence            88877777533344455677777777776543 36789999999998666542 222222  334567788888876554


Q ss_pred             C--eEEEEeCCCCcEEEEEeC
Q psy952          198 D--YIASVDLDGKHKHIVISG  216 (573)
Q Consensus       198 ~--~I~~~~~dG~~~~~l~~~  216 (573)
                      +  .|++++.+|+..+.+...
T Consensus       304 G~p~I~~~~~~g~~~~riT~~  324 (425)
T COG0823         304 GRPQIYLYDLEGSQVTRLTFS  324 (425)
T ss_pred             CCcceEEECCCCCceeEeecc
Confidence            4  699999999987666543

>KOG0285|consensus

Probab=96.43  E-value=0.53  Score=46.84  Aligned_cols=192  Identities=15%  Similarity=0.147  Sum_probs=110.7

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-  121 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-  121 (573)
                      .++.+..||+|+. +..|.+....+.|..+++..+.....+...+..++|++|....-.||-+- ..+.|---+|.-.. 
T Consensus       150 HlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~VKCwDLe~nkv  227 (460)
T KOG0285|consen  150 HLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQVKCWDLEYNKV  227 (460)
T ss_pred             ccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-CCCeeEEEechhhhh
Confidence            3566899999985 77788888889999999987766655555578999999987666665553 34566667775433 


Q ss_pred             eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeE
Q psy952          122 RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYI  200 (573)
Q Consensus       122 ~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I  200 (573)
                      .+.....+...+.|+++|.-..|+ |- ++...|..-+|........+   .+-..| ..+...+.+..||-. +....|
T Consensus       228 IR~YhGHlS~V~~L~lhPTldvl~-t~-grDst~RvWDiRtr~~V~~l---~GH~~~V~~V~~~~~dpqvit~-S~D~tv  301 (460)
T KOG0285|consen  228 IRHYHGHLSGVYCLDLHPTLDVLV-TG-GRDSTIRVWDIRTRASVHVL---SGHTNPVASVMCQPTDPQVITG-SHDSTV  301 (460)
T ss_pred             HHHhccccceeEEEeccccceeEE-ec-CCcceEEEeeecccceEEEe---cCCCCcceeEEeecCCCceEEe-cCCceE
Confidence            222335788899999999666554 43 23455555555444332222   233333 234444445555533 344455


Q ss_pred             EEEeCC-CCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEE
Q psy952          201 ASVDLD-GKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR  244 (573)
Q Consensus       201 ~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~  244 (573)
                      ..-++. |....++...  -....+|++.-....++-...+.|..
T Consensus       302 rlWDl~agkt~~tlt~h--kksvral~lhP~e~~fASas~dnik~  344 (460)
T KOG0285|consen  302 RLWDLRAGKTMITLTHH--KKSVRALCLHPKENLFASASPDNIKQ  344 (460)
T ss_pred             EEeeeccCceeEeeecc--cceeeEEecCCchhhhhccCCcccee
Confidence            554543 3223333322  23455566543332233333334433

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.38  E-value=1.3  Score=48.89  Aligned_cols=190  Identities=11%  Similarity=0.053  Sum_probs=105.1

Q ss_pred             cceEEEEEEcCCCEEEEEEC-------CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC----------
Q psy952           45 LNVVAMDFHYKENRFYFADV-------AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR----------  107 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~-------~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~----------  107 (573)
                      ..+..+++.+.++++.++..       ....|+.+...+.. ..+....  ....-.+++.++.|++...          
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence            45677888888888777652       23478888875544 3343221  1223345555565655532          


Q ss_pred             -CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEE---EeccCCCcEEEEe---cCCCCCC-Cc
Q psy952          108 -HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGK---IGMDGSNFTRILT---HEDDIAW-PN  179 (573)
Q Consensus       108 -~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r---~~ldG~~~~~l~~---~~~~l~~-P~  179 (573)
                       ..+.|++..+++...+.  ..-..+..+++.|...+|.+.-.   .+|+.   ...++.. ..+..   ....+.. +.
T Consensus       427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~  500 (591)
T PRK13616        427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAV  500 (591)
T ss_pred             CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCc-eeecccEEeecccCCccc
Confidence             23455555555433322  11224888999998888877762   35554   2323332 22310   0233333 35


Q ss_pred             eEEEeccCCeEEEEeCC-CCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952          180 ALTLDYFTERLYWADAH-LDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~-~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~  246 (573)
                      .++.- .++.|++.-.. ...++++.+||...+.+..+.......+|+-..+.||++|...  +....
T Consensus       501 ~l~W~-~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g--~~~l~  565 (591)
T PRK13616        501 SLDWR-TGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARA--VLQLP  565 (591)
T ss_pred             cceEe-cCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCc--eEEec
Confidence            55554 45557766443 3469999999988765433321333456666667899997543  44443

>KOG0266|consensus

Probab=96.30  E-value=1.5  Score=46.97  Aligned_cols=124  Identities=17%  Similarity=0.199  Sum_probs=84.5

Q ss_pred             ecccEEEEEc-CC-CceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC
Q psy952           23 NKYYVRNMSL-DA-TQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR  100 (573)
Q Consensus        23 ~~~~I~~i~l-~g-~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~  100 (573)
                      ....|+..++ +. ..+..+......+.+++|.+.. .++++-...+.|+..++.+......+...-..+.++++... +
T Consensus       223 ~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d-~  300 (456)
T KOG0266|consen  223 DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD-G  300 (456)
T ss_pred             CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC-C
Confidence            3567777777 33 3334444444557899999987 88888888889999999875444444444568889999864 5


Q ss_pred             cEEEEeCCCCeEEEEEcCCCce--eEeccCCCCc---ceEEEeCCCceEEEEe
Q psy952          101 KLYWLDRHSKQLDVAELDGTNR--KTLKTAIQDP---RGITLHPGIGYVYFSS  148 (573)
Q Consensus       101 ~LY~td~~~~~I~~~~ldg~~~--~~l~~~~~~P---~~Iavdp~~g~LYwtd  148 (573)
                      +++++-+..+.|.+.++.+...  ..++.....|   ..+.++|...+|+..-
T Consensus       301 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  301 NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS  353 (456)
T ss_pred             CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence            5556656788999999987773  2334444445   7888888665655543

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=96.30  E-value=0.33  Score=49.49  Aligned_cols=106  Identities=21%  Similarity=0.237  Sum_probs=67.3

Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCe------EEEEEcCCC-----ceeE-----ecc----CC----CCcceEEEeCCC
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQ------LDVAELDGT-----NRKT-----LKT----AI----QDPRGITLHPGI  141 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~------I~~~~ldg~-----~~~~-----l~~----~~----~~P~~Iavdp~~  141 (573)
                      .++...||+++. .+..||+-+.++.      ++.+.++..     ....     |..    .+    .++.||++ +..
T Consensus        18 ~~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~   95 (326)
T PF13449_consen   18 PFGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPD   95 (326)
T ss_pred             ccCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecC
Confidence            356778898886 3445565444444      666665541     1111     111    11    26889999 668


Q ss_pred             ceEEEEecCCc------CeEEEEeccCCCcEEEEecCCCC-------------CCCceEEEeccCCeEEEEeC
Q psy952          142 GYVYFSSWNLQ------AYIGKIGMDGSNFTRILTHEDDI-------------AWPNALTLDYFTERLYWADA  195 (573)
Q Consensus       142 g~LYwtd~~~~------~~I~r~~ldG~~~~~l~~~~~~l-------------~~P~glaiD~~~~~LYw~D~  195 (573)
                      |.+||++-+ .      +.|.+++++|.....+.. ...+             ....|||+.+++.+||.+-.
T Consensus        96 g~~~is~E~-~~~~~~~p~I~~~~~~G~~~~~~~v-P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   96 GSFWISSEG-GRTGGIPPRIRRFDLDGRVIRRFPV-PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             CCEEEEeCC-ccCCCCCCEEEEECCCCcccceEcc-ccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            999999854 5      899999999988666521 2222             12248999988887888743

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.30  E-value=1.3  Score=44.58  Aligned_cols=183  Identities=15%  Similarity=0.103  Sum_probs=105.7

Q ss_pred             CCCEEEEEe---cccEEEEEcCCCceeec--ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC--
Q psy952           15 IKPWLIFSN---KYYVRNMSLDATQYSLV--HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS--   87 (573)
Q Consensus        15 ~~~~l~~s~---~~~I~~i~l~g~~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~--   87 (573)
                      ...||++.+   ..+|.++++...++...  .++-    .+.|=..+.. |.+--..|++..+.++....+....+.+  
T Consensus       105 dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~  179 (342)
T PF06433_consen  105 DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPSGNRG-FSMLCGDGSLLTVTLDADGKEAQKSTKVFD  179 (342)
T ss_dssp             TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEEETTE-EEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred             CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEecCCCc-eEEEecCCceEEEEECCCCCEeEeeccccC
Confidence            445777766   36788888887765322  2221    2223333344 5566678888888887433322211111  


Q ss_pred             --CCc--ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc----------CCCCcc---eEEEeCCCceEEEEecC
Q psy952           88 --HGL--EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT----------AIQDPR---GITLHPGIGYVYFSSWN  150 (573)
Q Consensus        88 --~~p--~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~----------~~~~P~---~Iavdp~~g~LYwtd~~  150 (573)
                        ..|  ..=+++..++++||+.. .|.|+.+++.|...+....          .-..|-   -+|+++..+.||+....
T Consensus       180 ~~~dp~f~~~~~~~~~~~~~F~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~  258 (342)
T PF06433_consen  180 PDDDPLFEHPAYSRDGGRLYFVSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ  258 (342)
T ss_dssp             TTTS-B-S--EEETTTTEEEEEBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred             CCCcccccccceECCCCeEEEEec-CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence              111  11123335668888764 6899999999887654321          111243   49999999999998631


Q ss_pred             C--------cCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCC-eEEEEeCCCCeEEEEeCCC
Q psy952          151 L--------QAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTE-RLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       151 ~--------~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~-~LYw~D~~~~~I~~~~~dG  207 (573)
                      .        ...|+.+++.-..+..-+    .|..| .+|+|..+.. +||-++...+.|..++.-.
T Consensus       259 g~~gsHKdpgteVWv~D~~t~krv~Ri----~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t  321 (342)
T PF06433_consen  259 GGEGSHKDPGTEVWVYDLKTHKRVARI----PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT  321 (342)
T ss_dssp             --TT-TTS-EEEEEEEETTTTEEEEEE----EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred             CCCCCccCCceEEEEEECCCCeEEEEE----eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence            1        126888877655444333    22223 3677765544 6676777777888887653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.29  E-value=1.9  Score=45.53  Aligned_cols=219  Identities=16%  Similarity=0.259  Sum_probs=115.5

Q ss_pred             ccEEEEEcCCCceeecccCCcce--EEEEEEcCCCEEEEEECCC----------CeEEEEEcCCCcce--EEEcCCCCCc
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNV--VAMDFHYKENRFYFADVAA----------KTIYRSRVGSTEKE--RVIRHDSHGL   90 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~--~~v~~d~~~~~ly~~d~~~----------~~I~~~~~~g~~~~--~i~~~~~~~p   90 (573)
                      ..|+.+++.+....  ...+..+  .+|.|...+..||++....          ..|++..+.....+  .|+. ....+
T Consensus       150 ~~l~v~Dl~tg~~l--~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe-~~~~~  226 (414)
T PF02897_consen  150 YTLRVFDLETGKFL--PDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFE-EPDEP  226 (414)
T ss_dssp             EEEEEEETTTTEEE--EEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--TTCT
T ss_pred             EEEEEEECCCCcCc--CCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEe-ecCCC
Confidence            35777777655321  1122222  2388988878898887533          35888888654433  3443 32333


Q ss_pred             c---eeEEeecCCcEEEEeC--CC-CeEEEEEcCCC-----ceeEeccCCCCcceEEEeCCCceEEE-EecC-CcCeEEE
Q psy952           91 E---GLAVDWVGRKLYWLDR--HS-KQLDVAELDGT-----NRKTLKTAIQDPRGITLHPGIGYVYF-SSWN-LQAYIGK  157 (573)
Q Consensus        91 ~---glavD~~~~~LY~td~--~~-~~I~~~~ldg~-----~~~~l~~~~~~P~~Iavdp~~g~LYw-td~~-~~~~I~r  157 (573)
                      .   ++.+...++.|++.-.  .. ..|+++++...     ..+.|......-...+-+. ++.+|+ |+.+ ...+|.+
T Consensus       227 ~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~  305 (414)
T PF02897_consen  227 FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVA  305 (414)
T ss_dssp             TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEE
T ss_pred             cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEE
Confidence            3   5666666777776542  23 46888888764     3333444333333333333 555554 5543 2568999


Q ss_pred             EeccCCCc----EEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCC-CCcEEEEEeCCccceeEEEee--e
Q psy952          158 IGMDGSNF----TRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLD-GKHKHIVISGQKVPHVFALTL--F  228 (573)
Q Consensus       158 ~~ldG~~~----~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~--~  228 (573)
                      ++++....    .+++. ...-..-.++.+  .+++|++....  ..+|..++++ +.....+.... .....++..  .
T Consensus       306 ~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~  381 (414)
T PF02897_consen  306 VDLADPSPAEWWTVLIP-EDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFD  381 (414)
T ss_dssp             EETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT
T ss_pred             ecccccccccceeEEcC-CCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCC
Confidence            99887652    34551 111112345555  47888877554  3478889998 54444443322 233334432  3


Q ss_pred             CCeEEEe--cCC-CCceEEEeccCCc
Q psy952          229 EDHIYWT--DWN-TKSINRADKFNGR  251 (573)
Q Consensus       229 ~~~lywt--d~~-~~~I~~~~~~~g~  251 (573)
                      ++.++++  .+. -..|++++..+++
T Consensus       382 ~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  382 SDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             -SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             CCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            4445443  332 2457777766554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.26  E-value=1.5  Score=44.15  Aligned_cols=205  Identities=14%  Similarity=0.139  Sum_probs=115.2

Q ss_pred             EEEEEcCCCEEEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC--CCceeE-
Q psy952           49 AMDFHYKENRFYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD--GTNRKT-  124 (573)
Q Consensus        49 ~v~~d~~~~~ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld--g~~~~~-  124 (573)
                      -+++...++.+|+.+.. ..+|-.+++.....-..+    ..|--.-+-+.++.=|.+-=+.|++..+.|+  |+..+. 
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei----~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI----DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE----EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee----cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            44666678999999975 568999999765432222    1222211222232234444456788877776  443321 


Q ss_pred             --eccCCCCcc--eEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC--------CCCCc---eEEEeccCCe
Q psy952          125 --LKTAIQDPR--GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD--------IAWPN---ALTLDYFTER  189 (573)
Q Consensus       125 --l~~~~~~P~--~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~--------l~~P~---glaiD~~~~~  189 (573)
                        +......|.  .=++....+.+||...  .+.|+.+++.|...+.... -+-        -=.|.   -+|++...++
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy--~G~v~~~dlsg~~~~~~~~-~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSY--EGNVYSADLSGDSAKFGKP-WSLLTDAEKADGWRPGGWQLIAYHAASGR  251 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBT--TSEEEEEEETTSSEEEEEE-EESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEec--CCEEEEEeccCCcccccCc-ccccCccccccCcCCcceeeeeeccccCe
Confidence              111222221  1123344667887763  6789999999887554331 000        11243   3899999999


Q ss_pred             EEEEeCC----C-----CeEEEEeCCCCcEEEEEeCCccceeE-EEeeeCC---eEEEecCCCCceEEEeccCCcceEEE
Q psy952          190 LYWADAH----L-----DYIASVDLDGKHKHIVISGQKVPHVF-ALTLFED---HIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       190 LYw~D~~----~-----~~I~~~~~dG~~~~~l~~~~~~~~p~-~ia~~~~---~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      ||+.--.    .     ..|+.+++....|..-+.   +.+|. +|++-.+   .||-++...+.|...+..+|+.+..+
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~---l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP---LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE---EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe---CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            9997321    1     158888887655432222   34554 7777432   57777888889999999999888877


Q ss_pred             cccCCCc
Q psy952          257 RNTTHRP  263 (573)
Q Consensus       257 ~~~~~~p  263 (573)
                      ...-..|
T Consensus       329 ~~lG~~~  335 (342)
T PF06433_consen  329 EQLGETP  335 (342)
T ss_dssp             ---SSS-
T ss_pred             hccCCCc
Confidence            6533333

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PTZ00421 coronin; Provisional

Probab=96.26  E-value=2.2  Score=46.06  Aligned_cols=224  Identities=12%  Similarity=0.004  Sum_probs=118.2

Q ss_pred             cccEEEEEcCCCc--------eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952           24 KYYVRNMSLDATQ--------YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAV   95 (573)
Q Consensus        24 ~~~I~~i~l~g~~--------~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glav   95 (573)
                      ...|+..++....        ...+......+..|+|++..+.++++-...+.|..+++........+......+.+|++
T Consensus        97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~  176 (493)
T PTZ00421         97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW  176 (493)
T ss_pred             CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence            4667777765321        11111223457789999877667777677788999998755433333333346788888


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCC-CCcceEEEeCCCceEEEEecC--CcCeEEEEeccCCC-cEEEEe
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAI-QDPRGITLHPGIGYVYFSSWN--LQAYIGKIGMDGSN-FTRILT  170 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~-~~P~~Iavdp~~g~LYwtd~~--~~~~I~r~~ldG~~-~~~l~~  170 (573)
                      .+. +.++++-...+.|.+.++.... ...+.... .....+...+..+.|+.+-..  ....|...++.... ...+..
T Consensus       177 spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~  255 (493)
T PTZ00421        177 NLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD  255 (493)
T ss_pred             ECC-CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence            764 5566666677899999986433 22232211 112334455545555544321  23455555554222 111110


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCcccee-EEEeeeCCeEEEecCCCCceEEEeccC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHV-FALTLFEDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p-~~ia~~~~~lywtd~~~~~I~~~~~~~  249 (573)
                       ........-..+|+....||.+-.+.+.|...++............ ...| .|+++.-.+.  .|.....|.|+-|.+
T Consensus       256 -~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~  331 (493)
T PTZ00421        256 -LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKWS--LDTRKCEIARFYALT  331 (493)
T ss_pred             -cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccccc--ccccceeeeEEEEec
Confidence             0111111223567777788887666788888888654433322211 1222 4555433221  244445566665555


Q ss_pred             Ccc
Q psy952          250 GRD  252 (573)
Q Consensus       250 g~~  252 (573)
                      .+.
T Consensus       332 ~~~  334 (493)
T PTZ00421        332 YHS  334 (493)
T ss_pred             CCe
Confidence            443

>KOG1219|consensus

Probab=96.21  E-value=0.098  Score=62.93  Aligned_cols=88  Identities=20%  Similarity=0.521  Sum_probs=61.9

Q ss_pred             cccccccCccceee-eccceeecCCCCCCCcccCCccccCCCeeeec--ceeeCCcCCCCCCCCCCCCCC---CccccCC
Q psy952          279 AWLTAHRGSTTVAD-MIRSVYLGSGNKENSTCSSSQFRCNNGKCIDY--HLVCNKESDCEDDSDEPLHCN---VDECAKV  352 (573)
Q Consensus       279 lCl~~~~~~~~~~C-Cp~~~~l~~d~~~~~~C~~~~~~C~~g~Ci~~--~~~cd~~~~c~d~sde~~~c~---~~~C~~~  352 (573)
                      .|...+  +.+|+| ||..|...+-......|.+++.. ..|.|||.  .|.|++    +.+-.+. .|.   +++|.. 
T Consensus      3877 ~C~~~~--~ggy~CkCpsqysG~~CEi~~epC~snPC~-~GgtCip~~n~f~CnC----~~gyTG~-~Ce~~Gi~eCs~- 3947 (4289)
T KOG1219|consen 3877 TCISQP--KGGYKCKCPSQYSGNHCEIDLEPCASNPCL-TGGTCIPFYNGFLCNC----PNGYTGK-RCEARGISECSK- 3947 (4289)
T ss_pred             EecCCC--CCceEEeCcccccCcccccccccccCCCCC-CCCEEEecCCCeeEeC----CCCccCc-eeeccccccccc-
Confidence            455444  467999 99999876555557778776632 46789997  788964    4443333 443   456744 


Q ss_pred             CCCccCC--ccccCCCCccccCCCCce
Q psy952          353 ETNQCGH--KCVDTLTGYYCECNTGYK  377 (573)
Q Consensus       353 ~~~~C~~--~C~~~~~~~~C~C~~~f~  377 (573)
                        ..|.+  .|.+..++|.|.|.++|.
T Consensus      3948 --n~C~~gg~C~n~~gsf~CncT~g~~ 3972 (4289)
T KOG1219|consen 3948 --NVCGTGGQCINIPGSFHCNCTPGIL 3972 (4289)
T ss_pred             --ccccCCceeeccCCceEeccChhHh
Confidence              56777  899999999999998876

>KOG0285|consensus

Probab=96.20  E-value=1.3  Score=44.28  Aligned_cols=238  Identities=16%  Similarity=0.126  Sum_probs=138.6

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      .|.+.+-...++.-+. .+.|..+++...++.+.+. ....+.+|++....-+||-+- ..+.|.-++|.-...-.-...
T Consensus       155 r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~VKCwDLe~nkvIR~YhG  233 (460)
T KOG0285|consen  155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQVKCWDLEYNKVIRHYHG  233 (460)
T ss_pred             EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-CCCeeEEEechhhhhHHHhcc
Confidence            4777664445554433 5688899998887766666 355688999997777776553 456788888864432111223


Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-CCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-CC
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GS  163 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~  163 (573)
                      .+..+..|++.+.-+.| +|-.....|.+-++........+. .-.....+...|.+..+|-..  ....|.--++. |.
T Consensus       234 HlS~V~~L~lhPTldvl-~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S--~D~tvrlWDl~agk  310 (460)
T KOG0285|consen  234 HLSGVYCLDLHPTLDVL-VTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS--HDSTVRLWDLRAGK  310 (460)
T ss_pred             ccceeEEEeccccceeE-EecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec--CCceEEEeeeccCc
Confidence            46788889888755544 555555567776766554433333 222344555555444554332  12333333322 33


Q ss_pred             CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC-CCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCce
Q psy952          164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL-DGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSI  242 (573)
Q Consensus       164 ~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~-dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I  242 (573)
                      ...++.   ..-....+|++.|. ..+| |.+..+.|....+ .|...+. +++. ......|++.++.+|++-..++.|
T Consensus       311 t~~tlt---~hkksvral~lhP~-e~~f-ASas~dnik~w~~p~g~f~~n-lsgh-~~iintl~~nsD~v~~~G~dng~~  383 (460)
T KOG0285|consen  311 TMITLT---HHKKSVRALCLHPK-ENLF-ASASPDNIKQWKLPEGEFLQN-LSGH-NAIINTLSVNSDGVLVSGGDNGSI  383 (460)
T ss_pred             eeEeee---cccceeeEEecCCc-hhhh-hccCCccceeccCCccchhhc-cccc-cceeeeeeeccCceEEEcCCceEE
Confidence            333333   22223467787753 3344 4455566666554 3443333 2222 335567788889999998888888


Q ss_pred             EEEeccCCcceEEE
Q psy952          243 NRADKFNGRDYRVL  256 (573)
Q Consensus       243 ~~~~~~~g~~~~~l  256 (573)
                      ..-+..+|-+.+.+
T Consensus       384 ~fwdwksg~nyQ~~  397 (460)
T KOG0285|consen  384 MFWDWKSGHNYQRG  397 (460)
T ss_pred             EEEecCcCcccccc
Confidence            87777777665544

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=96.19  E-value=0.19  Score=54.54  Aligned_cols=141  Identities=20%  Similarity=0.227  Sum_probs=81.2

Q ss_pred             eEEEEE---EcCCCEEEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCC-
Q psy952           47 VVAMDF---HYKENRFYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGT-  120 (573)
Q Consensus        47 ~~~v~~---d~~~~~ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~-  120 (573)
                      -.++++   ++.+..+|.+|-. .+.|||+-.+......-.      -....+ -..+.||++... .+.++-+.|.-. 
T Consensus       246 HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~~~~~~~~~------~~~~~l-l~~GtLyaak~~~~g~~~Wv~L~~~~  318 (524)
T PF05787_consen  246 HEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSDKPWDPGDR------AANRDL-LDEGTLYAAKFNQDGTGEWVPLGHGQ  318 (524)
T ss_pred             ccceeEEeecCCeEEEEEEecCCCCeEEEEecCCCCCCccc------chhhhh-hhCCEeceEEECCCCcEEEEECCCcc
Confidence            346666   7777889999754 568898877653221000      000000 024556655422 233443443211 


Q ss_pred             -----------ceeEe-----------ccCCCCcceEEEeCCCceEEEEecCCc------------------CeEEEEec
Q psy952          121 -----------NRKTL-----------KTAIQDPRGITLHPGIGYVYFSSWNLQ------------------AYIGKIGM  160 (573)
Q Consensus       121 -----------~~~~l-----------~~~~~~P~~Iavdp~~g~LYwtd~~~~------------------~~I~r~~l  160 (573)
                                 ...++           .+.+.+|.+|+++|.++.||++.....                  +.|+|...
T Consensus       319 ~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~  398 (524)
T PF05787_consen  319 GGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDP  398 (524)
T ss_pred             cccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecc
Confidence                       01111           135677999999999999999964322                  47999988


Q ss_pred             cCC-------CcEEEEe--c-------------CCCCCCCceEEEeccCCeEEEEeC
Q psy952          161 DGS-------NFTRILT--H-------------EDDIAWPNALTLDYFTERLYWADA  195 (573)
Q Consensus       161 dG~-------~~~~l~~--~-------------~~~l~~P~glaiD~~~~~LYw~D~  195 (573)
                      ++.       .-.+++.  .             ...+..|.+|++|+ .++||+..-
T Consensus       399 ~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~-~G~LwI~eD  454 (524)
T PF05787_consen  399 DGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDP-DGNLWIQED  454 (524)
T ss_pred             cCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECC-CCCEEEEeC
Confidence            765       2222221  0             23477899999996 567777653

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.16  E-value=1  Score=46.13  Aligned_cols=216  Identities=13%  Similarity=0.069  Sum_probs=97.6

Q ss_pred             EEEEEe---cccEEEEEcCCCceeecccCC-cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc-ce
Q psy952           18 WLIFSN---KYYVRNMSLDATQYSLVHQDL-LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL-EG   92 (573)
Q Consensus        18 ~l~~s~---~~~I~~i~l~g~~~~~~~~~~-~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p-~g   92 (573)
                      +|+.++   ...++.++|.....+.+..+. .+..|..+.+.+..|||.. ....|+++++++...++|....-... .|
T Consensus        50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~g  128 (386)
T PF14583_consen   50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYG  128 (386)
T ss_dssp             EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEE
T ss_pred             EEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEEEECCccccccc
Confidence            444454   468999999988776664432 2233455667889988765 33589999998876555543221111 11


Q ss_pred             e-EEeecCCcEEEEe----------------------CCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCce-EEEEe
Q psy952           93 L-AVDWVGRKLYWLD----------------------RHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGY-VYFSS  148 (573)
Q Consensus        93 l-avD~~~~~LY~td----------------------~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~-LYwtd  148 (573)
                      - .++. ...+++.-                      ....+|..+++.+..+++++..-.+..-+-..|.... |-+.-
T Consensus       129 t~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCH  207 (386)
T PF14583_consen  129 TWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCH  207 (386)
T ss_dssp             EEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE
T ss_pred             ceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEec
Confidence            1 1121 12222211                      0124789999998888888865444445555554433 22322


Q ss_pred             cC---C-cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC-C---CCeEEEEeCCCCcEEEEEeCCccc
Q psy952          149 WN---L-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA-H---LDYIASVDLDGKHKHIVISGQKVP  220 (573)
Q Consensus       149 ~~---~-~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~-~---~~~I~~~~~dG~~~~~l~~~~~~~  220 (573)
                      -|   . ..+|+.++.||++.+.+.. .....+-.-=...+++.+|++... .   ...|..++++...++.+....   
T Consensus       208 EGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---  283 (386)
T PF14583_consen  208 EGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP---  283 (386)
T ss_dssp             -S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----
T ss_pred             cCCcceeceEEEEEEcCCCcceeeec-CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---
Confidence            12   2 3599999999999877652 111100000111233444444222 1   124777777765555544321   


Q ss_pred             eeEEEee-eCCeEEEecCCC
Q psy952          221 HVFALTL-FEDHIYWTDWNT  239 (573)
Q Consensus       221 ~p~~ia~-~~~~lywtd~~~  239 (573)
                      .-.-+.. .++.|++.|...
T Consensus       284 ~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  284 WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             SEEEEEE-TTSSEEEEEE--
T ss_pred             ceeeeEEcCCCCEEEecCCC
Confidence            1111222 467788887654

>PTZ00421 coronin; Provisional

Probab=95.95  E-value=3.1  Score=44.95  Aligned_cols=116  Identities=7%  Similarity=0.016  Sum_probs=74.9

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-------ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEE
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-------KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAE  116 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~  116 (573)
                      ...+.+|+|++.++.++++-...+.|..+++....       ....+...-..+..|++.+..++++++-...+.|.+.+
T Consensus        75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD  154 (493)
T PTZ00421         75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD  154 (493)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence            34578999998666666666677888888875431       11122222356778888877767777777788899999


Q ss_pred             cCCCcee-EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952          117 LDGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus       117 ldg~~~~-~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      +...... .+........+|+++|. |.++++-. ....|...++.
T Consensus       155 l~tg~~~~~l~~h~~~V~sla~spd-G~lLatgs-~Dg~IrIwD~r  198 (493)
T PTZ00421        155 VERGKAVEVIKCHSDQITSLEWNLD-GSLLCTTS-KDKKLNIIDPR  198 (493)
T ss_pred             CCCCeEEEEEcCCCCceEEEEEECC-CCEEEEec-CCCEEEEEECC
Confidence            8754433 33234445789999995 45555542 35566666654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=0.96  Score=41.93  Aligned_cols=180  Identities=17%  Similarity=0.148  Sum_probs=86.7

Q ss_pred             EEEEEe----cccEEEEEcCCCceee--ccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-CCC
Q psy952           18 WLIFSN----KYYVRNMSLDATQYSL--VHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-SHG   89 (573)
Q Consensus        18 ~l~~s~----~~~I~~i~l~g~~~~~--~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-~~~   89 (573)
                      +++.+.    ...|++.+|.+.+...  .+. .-..-.|+.  ..++.+|..-+..+.-++++.+.-.  .+-... -+.
T Consensus        57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit--~~gd~~y~LTw~egvaf~~d~~t~~--~lg~~~y~Ge  132 (262)
T COG3823          57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT--KLGDYFYQLTWKEGVAFKYDADTLE--ELGRFSYEGE  132 (262)
T ss_pred             EEEEeccccccceeEEEeccCceEEEEeecCCcccccccee--eccceEEEEEeccceeEEEChHHhh--hhcccccCCc
Confidence            455444    3578888887554321  111 111123333  3466777777777766776665321  111101 123


Q ss_pred             cceeEEeecCCcEEEEeCCCCeEEEEEcCC--CceeEecc----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           90 LEGLAVDWVGRKLYWLDRHSKQLDVAELDG--TNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        90 p~glavD~~~~~LY~td~~~~~I~~~~ldg--~~~~~l~~----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      =.||+.|  ..+|..+| ++..++..++..  ...++.++    .+.+-+-  +-...|.||---|- ..+|.|+..+-.
T Consensus       133 GWgLt~d--~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE--LE~VdG~lyANVw~-t~~I~rI~p~sG  206 (262)
T COG3823         133 GWGLTSD--DKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE--LEWVDGELYANVWQ-TTRIARIDPDSG  206 (262)
T ss_pred             ceeeecC--CcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccc--eeeeccEEEEeeee-ecceEEEcCCCC
Confidence            4566666  34454444 233343333221  00111110    1111111  12234666644442 456777777644


Q ss_pred             CcEEEEe----------cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952          164 NFTRILT----------HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       164 ~~~~l~~----------~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      .....+.          .......+||||.++..+++|++--.-..+..+.+++
T Consensus       207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~~  260 (262)
T COG3823         207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLDE  260 (262)
T ss_pred             cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEEecC
Confidence            3333221          0223446899999999999999865555555555443

>KOG1446|consensus

Probab=95.81  E-value=2.1  Score=41.96  Aligned_cols=237  Identities=15%  Similarity=0.107  Sum_probs=133.5

Q ss_pred             CEEEEEe-cccEEEEEcC-CCceeecccCCcceEEEEEEcCCCE-EEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952           17 PWLIFSN-KYYVRNMSLD-ATQYSLVHQDLLNVVAMDFHYKENR-FYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL   93 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~-g~~~~~~~~~~~~~~~v~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl   93 (573)
                      .+|+.+. ...|+.++.. |.+...+...-..+.-+-|-..... ||=+...+..|+-+++.....-..+...-..+.+|
T Consensus        27 ~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL  106 (311)
T KOG1446|consen   27 LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSL  106 (311)
T ss_pred             CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEE
Confidence            4555544 4477777764 5554444332222333344444444 44444456678887775543333333334688899


Q ss_pred             EEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEec---cCCCcEEEEe
Q psy952           94 AVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM---DGSNFTRILT  170 (573)
Q Consensus        94 avD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l---dG~~~~~l~~  170 (573)
                      .+-+.+ ..|.+-+..+.|..-++.-.....++.. ..+--+|+|| .|.+|.+-.+.. .|.-.++   |..-.+++.-
T Consensus       107 ~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp-~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i  182 (311)
T KOG1446|consen  107 SVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDP-EGLIFALANGSE-LIKLYDLRSFDKGPFTTFSI  182 (311)
T ss_pred             EecCCC-CeEEecccCCeEEeeEecCCCCceEEec-CCCcceeECC-CCcEEEEecCCC-eEEEEEecccCCCCceeEcc
Confidence            999876 7888887777888888875544444432 3355678999 678877765432 5554443   3333333321


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEe-CCCCcEEEEEeCC-ccceeEEEee-eCCeEEEecCCCCceEEEec
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVD-LDGKHKHIVISGQ-KVPHVFALTL-FEDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~l~~~~-~~~~p~~ia~-~~~~lywtd~~~~~I~~~~~  247 (573)
                      .......-+.|.+.+.++.|.++.. .+.|+.++ ++|.....+.... ...-|.+-++ -++..+.+-...++|..-+.
T Consensus       183 ~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~  261 (311)
T KOG1446|consen  183 TDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL  261 (311)
T ss_pred             CCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence            1233444467888877777776654 34444444 5676554443211 0223433333 35555556567788887777


Q ss_pred             cCCcceEEEcc
Q psy952          248 FNGRDYRVLRN  258 (573)
Q Consensus       248 ~~g~~~~~l~~  258 (573)
                      .+|..+.++..
T Consensus       262 ~tg~~v~~~~~  272 (311)
T KOG1446|consen  262 ETGKKVAVLRG  272 (311)
T ss_pred             CCCcEeeEecC
Confidence            88877766654

>PHA02713 hypothetical protein; Provisional

Probab=95.77  E-value=2.1  Score=47.16  Aligned_cols=210  Identities=7%  Similarity=0.067  Sum_probs=104.9

Q ss_pred             EEEEEcCCCceeecccCCc--ceEEEEEEcCCCEEEEEECC------CCeEEEEEcCCCcceEEEcCCCCCcc-eeEEee
Q psy952           27 VRNMSLDATQYSLVHQDLL--NVVAMDFHYKENRFYFADVA------AKTIYRSRVGSTEKERVIRHDSHGLE-GLAVDW   97 (573)
Q Consensus        27 I~~i~l~g~~~~~~~~~~~--~~~~v~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~i~~~~~~~p~-glavD~   97 (573)
                      +.++++.......+.+...  ...+++.  .++.||++...      ...++++++.......+.  .+..|+ +.++-.
T Consensus       274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~--l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~--~m~~~R~~~~~~~  349 (557)
T PHA02713        274 ILVYNINTMEYSVISTIPNHIINYASAI--VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP--PMIKNRCRFSLAV  349 (557)
T ss_pred             EEEEeCCCCeEEECCCCCccccceEEEE--ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC--CCcchhhceeEEE
Confidence            5556665544433322111  1124443  37899998542      145788887655443322  222232 222233


Q ss_pred             cCCcEEEEeCC-----CCeEEEEEcCCCceeEeccCCCCcc-eEEEeCCCceEEEEecCC--------------------
Q psy952           98 VGRKLYWLDRH-----SKQLDVAELDGTNRKTLKTAIQDPR-GITLHPGIGYVYFSSWNL--------------------  151 (573)
Q Consensus        98 ~~~~LY~td~~-----~~~I~~~~ldg~~~~~l~~~~~~P~-~Iavdp~~g~LYwtd~~~--------------------  151 (573)
                      .+++||+.-..     ...++++++....-..+. .+..|+ +.++-..+|.||+.-...                    
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP-DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECC-CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence            57999998643     245888887654433322 222222 111112368999975221                    


Q ss_pred             --cCeEEEEeccCCCcEEEEecCCCCCCC---ceEEEeccCCeEEEEeCCC------CeEEEEeCCC-CcEEEEEeCCcc
Q psy952          152 --QAYIGKIGMDGSNFTRILTHEDDIAWP---NALTLDYFTERLYWADAHL------DYIASVDLDG-KHKHIVISGQKV  219 (573)
Q Consensus       152 --~~~I~r~~ldG~~~~~l~~~~~~l~~P---~glaiD~~~~~LYw~D~~~------~~I~~~~~dG-~~~~~l~~~~~~  219 (573)
                        ...+++.++.-..=..+    ..+..|   .++++  .+++||+.-...      ..|+++++.. ..=+.+..-..-
T Consensus       429 ~~~~~ve~YDP~td~W~~v----~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~  502 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETL----PNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR  502 (557)
T ss_pred             cccceEEEECCCCCeEeec----CCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence              12455555543221111    222222   24443  378999985322      3477888776 232322221101


Q ss_pred             ceeEEEeeeCCeEEEecCCCC--ceEEEec
Q psy952          220 PHVFALTLFEDHIYWTDWNTK--SINRADK  247 (573)
Q Consensus       220 ~~p~~ia~~~~~lywtd~~~~--~I~~~~~  247 (573)
                      ..-.++++.+++||++-...+  .|.+.|.
T Consensus       503 r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        503 LSALHTILHDNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             cccceeEEECCEEEEEeeecceeehhhcCc
Confidence            123688889999999854333  3444443

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.76  E-value=0.03  Score=44.54  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=30.3

Q ss_pred             CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952          172 EDDIAWPNALTLDYFTERLYWADAHLDYIASVDL  205 (573)
Q Consensus       172 ~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~  205 (573)
                      .+++..|+||++++..+.||+++...+.|..+..
T Consensus        50 a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~   83 (86)
T PF01731_consen   50 ASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR   83 (86)
T ss_pred             eccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence            3789999999999999999999999998887754

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=95.67  E-value=0.0055  Score=39.90  Aligned_cols=31  Identities=48%  Similarity=1.070  Sum_probs=25.8

Q ss_pred             CCCccCCccccCCCCccccCCCCceecCCCc
Q psy952          353 ETNQCGHKCVDTLTGYYCECNTGYKLLEDGK  383 (573)
Q Consensus       353 ~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~  383 (573)
                      ++..|++.|.+..+++.|+|+.+|++..+++
T Consensus         4 ~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~   34 (36)
T PF14670_consen    4 NNGGCSHICVNTPGSYRCSCPPGYKLAEDGR   34 (36)
T ss_dssp             GGGGSSSEEEEETTSEEEE-STTEEE-TTSS
T ss_pred             CCCCcCCCCccCCCceEeECCCCCEECcCCC
Confidence            5678999999999999999999999988765

...

>KOG0268|consensus

Probab=95.63  E-value=0.26  Score=49.05  Aligned_cols=156  Identities=10%  Similarity=0.099  Sum_probs=94.3

Q ss_pred             CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      ......+.+.++.-.|.-+-...+.|..+|+.......-+.-...+++|+..| +++.|++-. ....|+..+|--..+.
T Consensus       187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~-ED~nlY~~DmR~l~~p  264 (433)
T KOG0268|consen  187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAAN-EDHNLYTYDMRNLSRP  264 (433)
T ss_pred             CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeecc-ccccceehhhhhhccc
Confidence            33445566666666666666666778888875443322222334689999999 899998863 3566887777544433


Q ss_pred             EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEE-Ee--cCCCCceE
Q psy952          167 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIY-WT--DWNTKSIN  243 (573)
Q Consensus       167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~ly-wt--d~~~~~I~  243 (573)
                      +-+- ..-......+.+. ..|.=|++-+....|..+..+.+..+-++...+..+.+++.+--+.-| ++  |-++-+++
T Consensus       265 ~~v~-~dhvsAV~dVdfs-ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW  342 (433)
T KOG0268|consen  265 LNVH-KDHVSAVMDVDFS-PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLW  342 (433)
T ss_pred             chhh-cccceeEEEeccC-CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeee
Confidence            3220 1111111233333 356667787788889999988777776666555789999998544333 33  33344444


Q ss_pred             EEe
Q psy952          244 RAD  246 (573)
Q Consensus       244 ~~~  246 (573)
                      +++
T Consensus       343 ka~  345 (433)
T KOG0268|consen  343 KAK  345 (433)
T ss_pred             ecc
Confidence            443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.60  E-value=6  Score=45.71  Aligned_cols=196  Identities=11%  Similarity=0.007  Sum_probs=107.1

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-----cc--eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-----EK--ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL  117 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-----~~--~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l  117 (573)
                      ..+.+|+|++.++ ++.+-...+.|..+++...     ..  ..+...+...+.++++.+..+.+..+-...+.|.+.++
T Consensus       484 ~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~  562 (793)
T PLN00181        484 NLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV  562 (793)
T ss_pred             CcEEEEEECCCCC-EEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence            3478899997554 4555556677888776431     10  01111112345566665544555555556788888888


Q ss_pred             CCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952          118 DGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH  196 (573)
Q Consensus       118 dg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~  196 (573)
                      ..... ..+........+|+++|..+.++++-. ....|...++........+  .. ......+.+.+..+.++++-..
T Consensus       563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-~Dg~v~iWd~~~~~~~~~~--~~-~~~v~~v~~~~~~g~~latgs~  638 (793)
T PLN00181        563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-DDGSVKLWSINQGVSIGTI--KT-KANICCVQFPSESGRSLAFGSA  638 (793)
T ss_pred             CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-CCCEEEEEECCCCcEEEEE--ec-CCCeEEEEEeCCCCCEEEEEeC
Confidence            75433 333334455789999986777776653 3556666666533322222  11 1233455554455666666667


Q ss_pred             CCeEEEEeCCCCcE-EEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952          197 LDYIASVDLDGKHK-HIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       197 ~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~  246 (573)
                      .+.|...++..... .....+. ......|.+..+..+++-...+.|...+
T Consensus       639 dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~~~~~lvs~s~D~~ikiWd  688 (793)
T PLN00181        639 DHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLKLWD  688 (793)
T ss_pred             CCeEEEEECCCCCccceEecCC-CCCEEEEEEeCCCEEEEEECCCEEEEEe
Confidence            78888888754332 1112221 1234455555555555544555555444

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=95.49  E-value=0.12  Score=55.94  Aligned_cols=66  Identities=18%  Similarity=0.163  Sum_probs=46.9

Q ss_pred             cCCcceEEEEEEcCCCEEEEEECCC-------------------CeEEEEEcCCC-------cceEEEc-----------
Q psy952           42 QDLLNVVAMDFHYKENRFYFADVAA-------------------KTIYRSRVGST-------EKERVIR-----------   84 (573)
Q Consensus        42 ~~~~~~~~v~~d~~~~~ly~~d~~~-------------------~~I~~~~~~g~-------~~~~i~~-----------   84 (573)
                      ..+.++.+|++++.++.||++-...                   +.|+|+...+.       ..+.++.           
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            3567799999999999999986433                   48999998765       2233222           


Q ss_pred             ------CCCCCcceeEEeecCCcEEEE-eCC
Q psy952           85 ------HDSHGLEGLAVDWVGRKLYWL-DRH  108 (573)
Q Consensus        85 ------~~~~~p~glavD~~~~~LY~t-d~~  108 (573)
                            ..+..|.+|+||.. ++||+. |..
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~-G~LwI~eD~~  456 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPD-GNLWIQEDGG  456 (524)
T ss_pred             cCcccCCCcCCCCceEECCC-CCEEEEeCCC
Confidence                  12679999999985 556664 443

>KOG4441|consensus

Probab=95.36  E-value=1.7  Score=47.86  Aligned_cols=183  Identities=10%  Similarity=0.108  Sum_probs=112.3

Q ss_pred             eEEEEEEcCCCEEEEEECCC------CeEEEEEcCCCcceEEEcCCCCCc-ceeEEeecCCcEEEEeCCC-----CeEEE
Q psy952           47 VVAMDFHYKENRFYFADVAA------KTIYRSRVGSTEKERVIRHDSHGL-EGLAVDWVGRKLYWLDRHS-----KQLDV  114 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~------~~I~~~~~~g~~~~~i~~~~~~~p-~glavD~~~~~LY~td~~~-----~~I~~  114 (573)
                      ..++++-  ++.||++--.+      ..+++++........+.  .+..+ .++++-...+.||..-...     ..|++
T Consensus       325 ~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a--~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~  400 (571)
T KOG4441|consen  325 RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA--PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVEC  400 (571)
T ss_pred             cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccC--CccCccccceeEEECCEEEEEeccccccccccEEE
Confidence            3455554  78999986544      46788888766554432  22222 2445555789999986433     46888


Q ss_pred             EEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC-----cCeEEEEeccCCCcEEEEecCCCCCCCc-eEEEeccCC
Q psy952          115 AELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL-----QAYIGKIGMDGSNFTRILTHEDDIAWPN-ALTLDYFTE  188 (573)
Q Consensus       115 ~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-----~~~I~r~~ldG~~~~~l~~~~~~l~~P~-glaiD~~~~  188 (573)
                      .+.....-..+..-...-.+.++-..+|.||.+-...     -.++++.+.....=+.+    ..+..+. ++.+-..++
T Consensus       401 YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~----~~M~~~R~~~g~a~~~~  476 (571)
T KOG4441|consen  401 YDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI----APMNTRRSGFGVAVLNG  476 (571)
T ss_pred             ecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec----CCcccccccceEEEECC
Confidence            8888766555543333334555555689999986322     24677776654432222    2333332 333444599


Q ss_pred             eEEEEeCC-----CCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecC
Q psy952          189 RLYWADAH-----LDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW  237 (573)
Q Consensus       189 ~LYw~D~~-----~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~  237 (573)
                      +||+.-..     ...|+++++....-..+..-..-....|+++.++.||+.-.
T Consensus       477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG  530 (571)
T KOG4441|consen  477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG  530 (571)
T ss_pred             EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence            99998443     34588999887766666432213345788999999999854

>PLN00181 protein SPA1-RELATED; Provisional

Probab=95.35  E-value=7.3  Score=45.04  Aligned_cols=156  Identities=3%  Similarity=-0.065  Sum_probs=90.5

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT  124 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~  124 (573)
                      ..+.+++|++..+.+..+-...+.|..+++........+......+.+|++.+..+.++++-...+.|.+.++.......
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence            44678888876555556666678888888875443333333335677888876677888888888899999886443222


Q ss_pred             eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc--EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952          125 LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF--TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS  202 (573)
Q Consensus       125 l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~--~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  202 (573)
                      .+........+++.+..+.++.+-. ..+.|...++.....  ..+.   ..-.....+.+.  .+..+++-...+.|..
T Consensus       613 ~~~~~~~v~~v~~~~~~g~~latgs-~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~--~~~~lvs~s~D~~iki  686 (793)
T PLN00181        613 TIKTKANICCVQFPSESGRSLAFGS-ADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFV--DSSTLVSSSTDNTLKL  686 (793)
T ss_pred             EEecCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEECCCCCccceEec---CCCCCEEEEEEe--CCCEEEEEECCCEEEE
Confidence            2222234566666655666666553 355677666643321  1222   111122345553  3444445455666666


Q ss_pred             EeCC
Q psy952          203 VDLD  206 (573)
Q Consensus       203 ~~~d  206 (573)
                      .++.
T Consensus       687 Wd~~  690 (793)
T PLN00181        687 WDLS  690 (793)
T ss_pred             EeCC
Confidence            6654

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=95.25  E-value=2.5  Score=40.42  Aligned_cols=107  Identities=20%  Similarity=0.289  Sum_probs=62.9

Q ss_pred             EeCCCCeEEEEEcCCCce--eEec-------cCCCCcceEEEe--CCCceEEEEecCCcCeEEEEec-c---CCCcEEEE
Q psy952          105 LDRHSKQLDVAELDGTNR--KTLK-------TAIQDPRGITLH--PGIGYVYFSSWNLQAYIGKIGM-D---GSNFTRIL  169 (573)
Q Consensus       105 td~~~~~I~~~~ldg~~~--~~l~-------~~~~~P~~Iavd--p~~g~LYwtd~~~~~~I~r~~l-d---G~~~~~l~  169 (573)
                      +|..+..|.++..++..+  +.+.       +++..|.|+++.  |..|-+|+--.+..+.|....+ |   |.....++
T Consensus       119 SdR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~v  198 (364)
T COG4247         119 SDRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLV  198 (364)
T ss_pred             ccccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceee
Confidence            345566777776665432  2222       466779999985  5556566544344566665554 2   33333333


Q ss_pred             ecCCCCCCC---ceEEEeccCCeEEEEeCCCCeEEEEeCC---CCcEEEEEe
Q psy952          170 THEDDIAWP---NALTLDYFTERLYWADAHLDYIASVDLD---GKHKHIVIS  215 (573)
Q Consensus       170 ~~~~~l~~P---~glaiD~~~~~LYw~D~~~~~I~~~~~d---G~~~~~l~~  215 (573)
                         ..+..|   .|+..|-..+.||+++.. -.||.+..+   |...++|.+
T Consensus       199 ---R~fk~~tQTEG~VaDdEtG~LYIaeEd-vaiWK~~Aep~~G~~g~~idr  246 (364)
T COG4247         199 ---RQFKIPTQTEGMVADDETGFLYIAEED-VAIWKYEAEPNRGNTGRLIDR  246 (364)
T ss_pred             ---EeeecCCcccceeeccccceEEEeecc-ceeeecccCCCCCCccchhhh
Confidence               233333   599999999999999753 457776654   444454443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.23  E-value=3  Score=39.87  Aligned_cols=175  Identities=13%  Similarity=0.084  Sum_probs=81.9

Q ss_pred             CEEEEE-ecccEEEEEcCCCce--eeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC-CCcceEE-EcC--C--
Q psy952           17 PWLIFS-NKYYVRNMSLDATQY--SLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG-STEKERV-IRH--D--   86 (573)
Q Consensus        17 ~~l~~s-~~~~I~~i~l~g~~~--~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~i-~~~--~--   86 (573)
                      ..|+++ ..+.|+.++....+.  +.... .+..+  ...  ..+.||+.... +.|+.+++. |...-.+ ...  .  
T Consensus        37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~--~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PVV--DGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EEE--ETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--eee--cccccccccce-eeeEecccCCcceeeeeccccccccc
Confidence            455555 567888888743332  11111 11222  122  36777777633 378888743 3332221 111  1  


Q ss_pred             CCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEec-cC--CCC--------cceEEEeCCCceEEEEecCCcCe
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLK-TA--IQD--------PRGITLHPGIGYVYFSSWNLQAY  154 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~-~~--~~~--------P~~Iavdp~~g~LYwtd~~~~~~  154 (573)
                      +..+..++++  ++.||+... .+.|..+++. |..+-... ..  ...        ...+.++  .+.||++...  ..
T Consensus       112 ~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~--g~  184 (238)
T PF13360_consen  112 VRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DGRVYVSSGD--GR  184 (238)
T ss_dssp             TB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TTEEEEECCT--SS
T ss_pred             cccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CCEEEEEcCC--Ce
Confidence            1223334443  677777765 5678888865 43322221 11  000        1122222  4577777632  22


Q ss_pred             EEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc
Q psy952          155 IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH  209 (573)
Q Consensus       155 I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~  209 (573)
                      +..+++....+.  ..  ..+..+.++ ....++.||+.+ ..++|..+++....
T Consensus       185 ~~~~d~~tg~~~--w~--~~~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  185 VVAVDLATGEKL--WS--KPISGIYSL-PSVDGGTLYVTS-SDGRLYALDLKTGK  233 (238)
T ss_dssp             EEEEETTTTEEE--EE--ECSS-ECEC-EECCCTEEEEEE-TTTEEEEEETTTTE
T ss_pred             EEEEECCCCCEE--EE--ecCCCccCC-ceeeCCEEEEEe-CCCEEEEEECCCCC
Confidence            333344433322  21  123333332 233577777777 56777777765543

...

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=95.13  E-value=1.1  Score=43.64  Aligned_cols=146  Identities=14%  Similarity=0.075  Sum_probs=81.7

Q ss_pred             CCEEEEEECCCCeEEEEEcCCCcce-EEEcCC--C----------CCcceeEEeecCCc-EEEEeCCCCeEEEEEcCCCc
Q psy952           56 ENRFYFADVAAKTIYRSRVGSTEKE-RVIRHD--S----------HGLEGLAVDWVGRK-LYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        56 ~~~ly~~d~~~~~I~~~~~~g~~~~-~i~~~~--~----------~~p~glavD~~~~~-LY~td~~~~~I~~~~ldg~~  121 (573)
                      ++.||+--.....|.|+++...... .....+  .          ..-..+|+|..+=. ||-+....+.|.+..||-..
T Consensus        78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~t  157 (250)
T PF02191_consen   78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPET  157 (250)
T ss_pred             CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCccc
Confidence            6889999888899999999876544 222111  1          12256899843211 34445556679888888655


Q ss_pred             eeEec---cCCCCcceEEEeCCCceEEEEecCCc--CeE-EEEecc-CCCcEEEEecCCCCCCCceEEEeccCCeEEEEe
Q psy952          122 RKTLK---TAIQDPRGITLHPGIGYVYFSSWNLQ--AYI-GKIGMD-GSNFTRILTHEDDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       122 ~~~l~---~~~~~P~~Iavdp~~g~LYwtd~~~~--~~I-~r~~ld-G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      ..+..   +.+..+..-..--.=|.||.++....  .+| ...++. +....+-+.-.........|..+|.+++||.=|
T Consensus       158 L~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd  237 (250)
T PF02191_consen  158 LSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD  237 (250)
T ss_pred             CceEEEEEeccCchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence            44432   33433321111112589999986532  233 233333 211111110023334456799999999999977


Q ss_pred             CCCCeEE
Q psy952          195 AHLDYIA  201 (573)
Q Consensus       195 ~~~~~I~  201 (573)
                      .+.-.++
T Consensus       238 ~G~~v~Y  244 (250)
T PF02191_consen  238 NGYQVTY  244 (250)
T ss_pred             CCeEEEE
Confidence            5443333

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.12  E-value=1.7  Score=44.77  Aligned_cols=160  Identities=10%  Similarity=0.136  Sum_probs=90.1

Q ss_pred             cEEEEEcCCCcee-ec-----ccCCcceEEEEEEcCCCEEEEE--ECCCC--eEEEEEcCCCcceEEEcC---C-CCCcc
Q psy952           26 YVRNMSLDATQYS-LV-----HQDLLNVVAMDFHYKENRFYFA--DVAAK--TIYRSRVGSTEKERVIRH---D-SHGLE   91 (573)
Q Consensus        26 ~I~~i~l~g~~~~-~~-----~~~~~~~~~v~~d~~~~~ly~~--d~~~~--~I~~~~~~g~~~~~i~~~---~-~~~p~   91 (573)
                      .|..+++.+.... +.     ......+..+.|...+++|++.  +...+  .|..+++..+..++++..   + +....
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence            4555666654432 11     1233346677787666645544  44443  456666655444444322   1 22223


Q ss_pred             eeEEe-ecCCcEEEEeCCC--CeEEEEEcCCCceeEeccCCCCc-ceEEEeCCCceEEEEecC---CcCeEEEEecc-CC
Q psy952           92 GLAVD-WVGRKLYWLDRHS--KQLDVAELDGTNRKTLKTAIQDP-RGITLHPGIGYVYFSSWN---LQAYIGKIGMD-GS  163 (573)
Q Consensus        92 glavD-~~~~~LY~td~~~--~~I~~~~ldg~~~~~l~~~~~~P-~~Iavdp~~g~LYwtd~~---~~~~I~r~~ld-G~  163 (573)
                      .+.+- ..++.++|.-...  .+|..++++|...+.|..+-... .-+++|+.++.||++-..   ....|++++++ |.
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~  318 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG  318 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence            33332 3455555554333  48999999998877665554444 357889999999999754   25689999999 66


Q ss_pred             CcEEEEecCCCCCCCc-eEEEeccCCe
Q psy952          164 NFTRILTHEDDIAWPN-ALTLDYFTER  189 (573)
Q Consensus       164 ~~~~l~~~~~~l~~P~-glaiD~~~~~  189 (573)
                      ..+.|.    ...... .+++.+.++.
T Consensus       319 ~~~~LT----~~~~~~~~~~~Spdg~y  341 (353)
T PF00930_consen  319 EPKCLT----CEDGDHYSASFSPDGKY  341 (353)
T ss_dssp             EEEESS----TTSSTTEEEEE-TTSSE
T ss_pred             CeEecc----CCCCCceEEEECCCCCE
Confidence            655543    222233 6677654443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0289|consensus

Probab=95.02  E-value=4.9  Score=41.25  Aligned_cols=197  Identities=12%  Similarity=0.042  Sum_probs=113.7

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR  122 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~  122 (573)
                      -..+.++..++.+.+|.|++...--++.---.|....++... .--....++|.+ .+.||-+-...+.|.+.++.....
T Consensus       303 ~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~  381 (506)
T KOG0289|consen  303 EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTN  381 (506)
T ss_pred             cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccc
Confidence            344678999999999999876654444333344443333221 112356677875 678999988888888888865442


Q ss_pred             e-EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC-CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeE
Q psy952          123 K-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG-SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI  200 (573)
Q Consensus       123 ~-~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG-~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  200 (573)
                      . .+-..-.....|++.. +||...+... ...|.--+|.- .+.+++.  .......+.+.+|..+..|-.+ ...-+|
T Consensus       382 ~a~Fpght~~vk~i~FsE-NGY~Lat~ad-d~~V~lwDLRKl~n~kt~~--l~~~~~v~s~~fD~SGt~L~~~-g~~l~V  456 (506)
T KOG0289|consen  382 VAKFPGHTGPVKAISFSE-NGYWLATAAD-DGSVKLWDLRKLKNFKTIQ--LDEKKEVNSLSFDQSGTYLGIA-GSDLQV  456 (506)
T ss_pred             cccCCCCCCceeEEEecc-CceEEEEEec-CCeEEEEEehhhcccceee--ccccccceeEEEcCCCCeEEee-cceeEE
Confidence            2 2223344478899986 7877776633 33354444432 1344444  3444456789999777666655 333355


Q ss_pred             EEEeCCCCcEEEEEe-CCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952          201 ASVDLDGKHKHIVIS-GQKVPHVFALTLFEDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       201 ~~~~~dG~~~~~l~~-~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~  246 (573)
                      +.+......=+.+.. ........++.+-+...|..+....+++++-
T Consensus       457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  457 YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             EEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            555543333222222 1112234566666666777777777776553

>KOG4328|consensus

Probab=94.99  E-value=1.8  Score=44.60  Aligned_cols=157  Identities=16%  Similarity=0.148  Sum_probs=90.8

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC--CCCCcceeEEeecCCcEEEEeCCCCeEEEEEc--CCCc
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH--DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL--DGTN  121 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~--~~~~p~glavD~~~~~LY~td~~~~~I~~~~l--dg~~  121 (573)
                      .+.+|.|.+.+-.-+++-...|.|...++++...+.++..  .-....++.+-...+.+|+.+... ...++++  +|+.
T Consensus       236 ~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~  314 (498)
T KOG4328|consen  236 PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSE  314 (498)
T ss_pred             cccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCcc
Confidence            3567777776665555556667888888877666655544  223445666666778888887543 5555555  4443


Q ss_pred             eeEeccCCCCcceEEEeCCCceEEEEecCC-cCeEEEEe-ccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe
Q psy952          122 RKTLKTAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIG-MDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY  199 (573)
Q Consensus       122 ~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~-ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~  199 (573)
                      ...+.-.-....+|+++|...+++.|-.-+ ..+|+=+. |.+.... ++.....-...++..+.|.+++|. +....+.
T Consensus       315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~HrrsV~sAyFSPs~gtl~-TT~~D~~  392 (498)
T KOG4328|consen  315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLPHRRSVNSAYFSPSGGTLL-TTCQDNE  392 (498)
T ss_pred             chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc-ceecccccceeeeeEEcCCCCceE-eeccCCc
Confidence            333333334789999999988887775332 33465332 2232211 221012222335666777788844 4445566


Q ss_pred             EEEEeC
Q psy952          200 IASVDL  205 (573)
Q Consensus       200 I~~~~~  205 (573)
                      |..++.
T Consensus       393 IRv~ds  398 (498)
T KOG4328|consen  393 IRVFDS  398 (498)
T ss_pred             eEEeec
Confidence            666554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=94.94  E-value=1.9  Score=44.21  Aligned_cols=157  Identities=13%  Similarity=0.184  Sum_probs=76.7

Q ss_pred             CCCE-EEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc--CCC
Q psy952           55 KENR-FYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT--AIQ  130 (573)
Q Consensus        55 ~~~~-ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~--~~~  130 (573)
                      .+++ ||.++.. ...++.++|++...+.|....-....|..+-...+.||+.... ..+.+++|+....++|..  ...
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-~~l~~vdL~T~e~~~vy~~p~~~  124 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-RSLRRVDLDTLEERVVYEVPDDW  124 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-TEEEEEETTT--EEEEEE--TTE
T ss_pred             CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-CeEEEEECCcCcEEEEEECCccc
Confidence            3444 5555543 4579999998877766654322233356666778888776533 578999999877666553  222


Q ss_pred             CcceEEEeCCCceEEEE------------ecC---------CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCC-
Q psy952          131 DPRGITLHPGIGYVYFS------------SWN---------LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE-  188 (573)
Q Consensus       131 ~P~~Iavdp~~g~LYwt------------d~~---------~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~-  188 (573)
                      ...+..+-...+.+++.            +|.         ...+|.++++.+...++++.  + -.|-.-+-+.|.+. 
T Consensus       125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~-~~wlgH~~fsP~dp~  201 (386)
T PF14583_consen  125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--D-TDWLGHVQFSPTDPT  201 (386)
T ss_dssp             EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--E-SS-EEEEEEETTEEE
T ss_pred             ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--c-CccccCcccCCCCCC
Confidence            23333332223333322            110         12479999999888888873  2 22223333333332 


Q ss_pred             eEEEEe-----CCCCeEEEEeCCCCcEEEEEe
Q psy952          189 RLYWAD-----AHLDYIASVDLDGKHKHIVIS  215 (573)
Q Consensus       189 ~LYw~D-----~~~~~I~~~~~dG~~~~~l~~  215 (573)
                      .|-++-     .-..+|+.++.||++.+.+..
T Consensus       202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~  233 (386)
T PF14583_consen  202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR  233 (386)
T ss_dssp             EEEEEE-S-TTTSS-SEEEEETTS---EESS-
T ss_pred             EEEEeccCCcceeceEEEEEEcCCCcceeeec
Confidence            223322     123589999999999877654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.92  E-value=6  Score=41.71  Aligned_cols=193  Identities=12%  Similarity=0.143  Sum_probs=111.4

Q ss_pred             EEEEEcCCCEEEEE-ECCC---CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC--cEEEEeCC----------CCeE
Q psy952           49 AMDFHYKENRFYFA-DVAA---KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR--KLYWLDRH----------SKQL  112 (573)
Q Consensus        49 ~v~~d~~~~~ly~~-d~~~---~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~--~LY~td~~----------~~~I  112 (573)
                      ++.+.+.+++|-++ +...   ..|+..++.++.   ++...+..+.+-.+-|..+  .||++...          ...|
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~---~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK---FLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE---EEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCc---CcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            66777778877776 3332   257888887652   2222333333322445444  67777632          3357


Q ss_pred             EEEEcCCCcee--EeccCCCCcc---eEEEeCCCceEEEEecCC-c-CeEEEEeccCC-----CcEEEEecCCCCCCCce
Q psy952          113 DVAELDGTNRK--TLKTAIQDPR---GITLHPGIGYVYFSSWNL-Q-AYIGKIGMDGS-----NFTRILTHEDDIAWPNA  180 (573)
Q Consensus       113 ~~~~ldg~~~~--~l~~~~~~P~---~Iavdp~~g~LYwtd~~~-~-~~I~r~~ldG~-----~~~~l~~~~~~l~~P~g  180 (573)
                      ++..+......  .|......+.   ++.+.+..++|+++-... . ..|+.++++..     ..+.|.   .... ...
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~---~~~~-~~~  280 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS---PRED-GVE  280 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE---ESSS-S-E
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe---CCCC-ceE
Confidence            77788765544  4444444444   788899889999875443 3 57888888764     333333   2221 122


Q ss_pred             EEEeccCCeEEEE-eC--CCCeEEEEeCCCCc---EE-EEEeCCccceeEEEeeeCCeEEEecCCC--CceEEEecc
Q psy952          181 LTLDYFTERLYWA-DA--HLDYIASVDLDGKH---KH-IVISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADKF  248 (573)
Q Consensus       181 laiD~~~~~LYw~-D~--~~~~I~~~~~dG~~---~~-~l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~~  248 (573)
                      -.++..++.+|+. +.  ..++|.+++++...   .. +|+....-....++.+++++|++....+  .+|...+..
T Consensus       281 ~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  281 YYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             EEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence            2345568888874 32  35689999988655   23 5554331236788889999999886554  356666644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0268|consensus

Probab=94.90  E-value=0.62  Score=46.45  Aligned_cols=235  Identities=12%  Similarity=0.092  Sum_probs=129.4

Q ss_pred             CCCceeeCCCCCC-EEEEEe--cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce
Q psy952            5 DESTCKRRDSIKP-WLIFSN--KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE   80 (573)
Q Consensus         5 dg~~C~~~~~~~~-~l~~s~--~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~   80 (573)
                      ||..|-+.. +.. ..+++.  .+.|+..+|...... .+....+.+.||.++. +..+++.|  ...|.++.++|....
T Consensus        67 dGV~~lakh-p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgd--DKtvK~wk~~~~p~~  142 (433)
T KOG0268|consen   67 DGVSCLAKH-PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGD--DKTVKQWKIDGPPLH  142 (433)
T ss_pred             cccchhhcC-cchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecC--CcceeeeeccCCcce
Confidence            788898754 333 333332  467888888765432 2223345578999985 55555554  446777777776555


Q ss_pred             EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee-EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952           81 RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIG  159 (573)
Q Consensus        81 ~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~-~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~  159 (573)
                      +++...  ...||.-.| .+.+|.|-..  .|...++.-.... .+-.+......|.+.|..-.|.-+- +....|...+
T Consensus       143 tilg~s--~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~-~sDrsIvLyD  216 (433)
T KOG0268|consen  143 TILGKS--VYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC-ASDRSIVLYD  216 (433)
T ss_pred             eeeccc--ccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee-ccCCceEEEe
Confidence            555432  444554443 3456666533  3444444322221 1212333345666666554454443 2344566665


Q ss_pred             ccCCC--cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEec
Q psy952          160 MDGSN--FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTD  236 (573)
Q Consensus       160 ldG~~--~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd  236 (573)
                      +--..  .++++     -..+|+|+..| +...|++-.....++.+++.-..+-+-+..........+++ .-|.=|++-
T Consensus       217 ~R~~~Pl~KVi~-----~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg  290 (433)
T KOG0268|consen  217 LRQASPLKKVIL-----TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG  290 (433)
T ss_pred             cccCCccceeee-----eccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence            54322  22222     23689999998 88888887777788888775443322221111233344444 235567777


Q ss_pred             CCCCceEEEeccCCcceEE
Q psy952          237 WNTKSINRADKFNGRDYRV  255 (573)
Q Consensus       237 ~~~~~I~~~~~~~g~~~~~  255 (573)
                      ....+|..+....|..+.+
T Consensus       291 syDksIRIf~~~~~~SRdi  309 (433)
T KOG0268|consen  291 SYDKSIRIFPVNHGHSRDI  309 (433)
T ss_pred             cccceEEEeecCCCcchhh
Confidence            7777777666555554443

>KOG4378|consensus

Probab=94.87  E-value=2.3  Score=44.21  Aligned_cols=198  Identities=13%  Similarity=0.127  Sum_probs=116.0

Q ss_pred             CCCceeeCCCCCCEEEEEe-cccEEEEEcCCCc-eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE
Q psy952            5 DESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQ-YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV   82 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~-~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i   82 (573)
                      |...|.+......|++-.. .+.|...+|.... ...+......+.+|+|...+.+|--+. ..+-|....+......+-
T Consensus        80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~~tt~  158 (673)
T KOG4378|consen   80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQKTTT  158 (673)
T ss_pred             chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec-cCCcEEEEecccCccccc
Confidence            3445665443333333222 3444555554321 122333345688999986655443332 234455555544333322


Q ss_pred             EcCC-CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952           83 IRHD-SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIG  159 (573)
Q Consensus        83 ~~~~-~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~  159 (573)
                      +..+ -..++-|.+.+..+.|..+-+..|.|.+.+..|....--.  ..-.--+||.+.|.+..|+++- |-..+|...+
T Consensus       159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV-G~Dkki~~yD  237 (673)
T KOG4378|consen  159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV-GYDKKINIYD  237 (673)
T ss_pred             eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe-cccceEEEee
Confidence            2222 2345567778888888888888899999888886643322  2333468999999999998886 4566777776


Q ss_pred             ccCCCc-EEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE
Q psy952          160 MDGSNF-TRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYIASVDLDGKHK  210 (573)
Q Consensus       160 ldG~~~-~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~  210 (573)
                      ...... ..|+     ...| ..+++- +.+.+..+-...++|+.+++.+...
T Consensus       238 ~~s~~s~~~l~-----y~~Plstvaf~-~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  238 IRSQASTDRLT-----YSHPLSTVAFS-ECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             cccccccceee-----ecCCcceeeec-CCceEEEeecCCceEEEEecccCCC
Confidence            543221 1222     1233 466665 4666667777788999999988654

>PTZ00420 coronin; Provisional

Probab=94.86  E-value=7.6  Score=42.64  Aligned_cols=118  Identities=5%  Similarity=0.037  Sum_probs=75.8

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc--ce------EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEE
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE--KE------RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVA  115 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~------~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~  115 (573)
                      ...+..|+|.+..+.++++-...+.|..+++....  ..      ..+......+..|++.+.+..|+.+-...+.|.+.
T Consensus        74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW  153 (568)
T PTZ00420         74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW  153 (568)
T ss_pred             CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence            34578999998766677777777888888875321  11      12222235678899988777777776677889999


Q ss_pred             EcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952          116 ELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus       116 ~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      ++........+........|+++|. |.++.+.. ....|...++...
T Consensus       154 Dl~tg~~~~~i~~~~~V~Slswspd-G~lLat~s-~D~~IrIwD~Rsg  199 (568)
T PTZ00420        154 DIENEKRAFQINMPKKLSSLKWNIK-GNLLSGTC-VGKHMHIIDPRKQ  199 (568)
T ss_pred             ECCCCcEEEEEecCCcEEEEEECCC-CCEEEEEe-cCCEEEEEECCCC
Confidence            9875543222223345788999995 55555442 2455666666543

>KOG2048|consensus

Probab=94.83  E-value=4.8  Score=43.53  Aligned_cols=201  Identities=11%  Similarity=0.135  Sum_probs=120.3

Q ss_pred             CCCCCceeeCCCCCCEEEEEe--cccEEEEEcCCCceeeccc----CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC
Q psy952            3 GWDESTCKRRDSIKPWLIFSN--KYYVRNMSLDATQYSLVHQ----DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS   76 (573)
Q Consensus         3 g~dg~~C~~~~~~~~~l~~s~--~~~I~~i~l~g~~~~~~~~----~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g   76 (573)
                      +...-+|.+.......|.++.  +-.|+++..++......+.    .......+.|-...++||++......+..+.+++
T Consensus       381 ~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~  460 (691)
T KOG2048|consen  381 EKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELET  460 (691)
T ss_pred             CccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecC
Confidence            344566776653344566665  4567777776632211111    1223456667767888888877777788888876


Q ss_pred             CcceEE---EcC-CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCC-CcceEEEe-CCCceEEEEecC
Q psy952           77 TEKERV---IRH-DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQ-DPRGITLH-PGIGYVYFSSWN  150 (573)
Q Consensus        77 ~~~~~i---~~~-~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~-~P~~Iavd-p~~g~LYwtd~~  150 (573)
                      ...+.+   ..+ ....+.-|++.+.+++|-+++ ..+.|.+++|.+...+.|...+. ..++.++. +..+.|-++.. 
T Consensus       461 ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats-  538 (691)
T KOG2048|consen  461 PSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATS-  538 (691)
T ss_pred             cchhhhhccccccCCCcceeEEEcCCCCEEEEEe-ccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEec-
Confidence            433322   222 234667788888888888887 67899999999888777764433 34566666 44566766663 


Q ss_pred             CcCeEEEEeccCCCcEEEEec---------CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952          151 LQAYIGKIGMDGSNFTRILTH---------EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       151 ~~~~I~r~~ldG~~~~~l~~~---------~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                       +..++-.++..++.......         .+-...-.|+.+|+.+...+|.= ..+.+..++.++
T Consensus       539 -~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~-~a~w~~~id~~~  602 (691)
T KOG2048|consen  539 -NNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVY-DAHWSCLIDFSL  602 (691)
T ss_pred             -CCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEE-cCcEEEEEecCC
Confidence             45666666633221111100         11122336999997777666653 345566666665

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.82  E-value=3.8  Score=42.24  Aligned_cols=93  Identities=15%  Similarity=0.188  Sum_probs=57.7

Q ss_pred             cceEEEe--CCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC----CCeEEEEeC
Q psy952          132 PRGITLH--PGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH----LDYIASVDL  205 (573)
Q Consensus       132 P~~Iavd--p~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~----~~~I~~~~~  205 (573)
                      ...+.+-  ...++|++++...-.+|+.++++|...+.|.  ......-.-+.+|..+++||++-..    ...|+++++
T Consensus       237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT--~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~  314 (353)
T PF00930_consen  237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT--SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL  314 (353)
T ss_dssp             SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS---SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred             ecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc--cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence            3445443  3344555555333568999999998765443  2322222357889999999998765    458999999


Q ss_pred             C-CCcEEEEEeCCccceeEEEeee
Q psy952          206 D-GKHKHIVISGQKVPHVFALTLF  228 (573)
Q Consensus       206 d-G~~~~~l~~~~~~~~p~~ia~~  228 (573)
                      + |...+.|.... ..+ +.+++.
T Consensus       315 ~~~~~~~~LT~~~-~~~-~~~~~S  336 (353)
T PF00930_consen  315 DSGGEPKCLTCED-GDH-YSASFS  336 (353)
T ss_dssp             TETTEEEESSTTS-STT-EEEEE-
T ss_pred             CCCCCeEeccCCC-CCc-eEEEEC
Confidence            9 77776665543 233 455553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG0318|consensus

Probab=94.81  E-value=6.3  Score=41.48  Aligned_cols=188  Identities=12%  Similarity=0.083  Sum_probs=109.0

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE-cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI-RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~-~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~  121 (573)
                      ..+.+.+|++.+.+..||=.+ ..+.|...+...+....+. ...-..+.+|+... .+.||- -...+++.+.++.+..
T Consensus       319 HnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~-~~~~~t-~g~Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  319 HNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE-SGELFT-IGWDDTLRVISLKDNG  395 (603)
T ss_pred             cccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecC-CCcEEE-EecCCeEEEEecccCc
Confidence            345688999998776666554 5678888887654433343 22235778888763 355544 4456788888875433


Q ss_pred             e--eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe
Q psy952          122 R--KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY  199 (573)
Q Consensus       122 ~--~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~  199 (573)
                      .  ...+.-..+|.+||+.+..+.+.++..+   .|.... +... ...+   .-...|.++|+.+....+-+. ...++
T Consensus       396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~---~iv~l~-~~~~-~~~~---~~~y~~s~vAv~~~~~~vaVG-G~Dgk  466 (603)
T KOG0318|consen  396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACIS---DIVLLQ-DQTK-VSSI---PIGYESSAVAVSPDGSEVAVG-GQDGK  466 (603)
T ss_pred             ccccceeecCCCceeEEEcCCCCEEEEEecC---cEEEEe-cCCc-ceee---ccccccceEEEcCCCCEEEEe-cccce
Confidence            2  2233455679999999977788777632   233322 1111 1111   234568899998766555443 34567


Q ss_pred             EEEEeCCCCcEEEEEe-CCccceeEEEeee--CCeEEEecCCCCce
Q psy952          200 IASVDLDGKHKHIVIS-GQKVPHVFALTLF--EDHIYWTDWNTKSI  242 (573)
Q Consensus       200 I~~~~~dG~~~~~l~~-~~~~~~p~~ia~~--~~~lywtd~~~~~I  242 (573)
                      |..+.+.|........ ......+..|++-  +.+|-.+|.....|
T Consensus       467 vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv  512 (603)
T KOG0318|consen  467 VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV  512 (603)
T ss_pred             EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE
Confidence            8888888865432221 1112345566663  34455556554433

>KOG2397|consensus

Probab=94.78  E-value=0.034  Score=57.41  Aligned_cols=44  Identities=34%  Similarity=0.598  Sum_probs=34.3

Q ss_pred             CcCCCceeeCCCC---ceecCCcCcCCCCCCCCCCCCCCC--CCCCCCCC
Q psy952          524 TCPPHHLKCANTN---ICVEPYWLCDGDNDCGDMSDEDPL--HCQQRTCP  568 (573)
Q Consensus       524 ~C~~~~f~C~~~~---~Ci~~~~~Cdg~~dC~d~sDe~~~--~c~~~~c~  568 (573)
                      .|..+.|+|.|.+   .=||.+.+=||+-||-|||||...  .|++ +|.
T Consensus        77 ACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~Sgv~c~n-tC~  125 (480)
T KOG2397|consen   77 ACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLSGVDCPN-TCI  125 (480)
T ss_pred             cCCCCceeeeecCCCceeeechhccCcccccccCCCCccCCCCCcc-hHH
Confidence            4567889997642   578999999999999999999865  5654 453

>KOG3509|consensus

Probab=94.68  E-value=0.036  Score=62.63  Aligned_cols=106  Identities=31%  Similarity=0.633  Sum_probs=84.5

Q ss_pred             ccCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCCCccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q psy952          423 CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNG  502 (573)
Q Consensus       423 ci~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d~sDe~~~~C~~c~~~~~Cd~  502 (573)
                      |......|++..+|.+.+|+.+..+....+.+.+++|.   ++++.-..+.||....|..++++  .+|.          
T Consensus         3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~----------   67 (964)
T KOG3509|consen    3 CVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCN---NPRCVQPEALLDADSTCGPNSTP--SGCN----------   67 (964)
T ss_pred             hhhhhhhhccchhhHhhcccCCCccccccCCcchhccC---CccccCchhhhccccccCCCCCc--CCcc----------
Confidence            55667789999999999999876666677888999998   67888888899999889888755  2220          


Q ss_pred             CCCCCCCCCCcccccCCCCCCCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCC
Q psy952          503 VNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED  558 (573)
Q Consensus       503 ~~dC~dg~~~de~~~~C~~~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~  558 (573)
                                -+     +....|.+.++.|.+-.+|.+.+..|||.+||.|+++|.
T Consensus        68 ----------~~-----~~~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~  108 (964)
T KOG3509|consen   68 ----------AK-----PSASDCKPTETQCRDRLRCNPQSFQCDGTNDCKDGSDEV  108 (964)
T ss_pred             ----------cc-----ccccccCCcccccccchhcCCccccccCCCCCCccchhc
Confidence                      00     023346788899998879999999999999999999997

>PTZ00420 coronin; Provisional

Probab=94.65  E-value=8.5  Score=42.25  Aligned_cols=220  Identities=10%  Similarity=0.032  Sum_probs=113.9

Q ss_pred             cccEEEEEcCCCc--ee-------ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           24 KYYVRNMSLDATQ--YS-------LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        24 ~~~I~~i~l~g~~--~~-------~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      ...|+..++....  ..       .+......+..|+|++....|+.+-...+.|..+++........+... ..+..|+
T Consensus        96 DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~~V~Sls  174 (568)
T PTZ00420         96 DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-KKLSSLK  174 (568)
T ss_pred             CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-CcEEEEE
Confidence            4677777775321  11       111223457899999987777777667788999998754432222222 4677888


Q ss_pred             EeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCC--cceEEE---eCCCceEEEEecCC--cCeEEEEeccCCC-c
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQD--PRGITL---HPGIGYVYFSSWNL--QAYIGKIGMDGSN-F  165 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~--P~~Iav---dp~~g~LYwtd~~~--~~~I~r~~ldG~~-~  165 (573)
                      +++.+ .++.+-...+.|.+.++..... ..+......  -+.+.+   .+..++|.-+....  ...|..-++.... .
T Consensus       175 wspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p  253 (568)
T PTZ00420        175 WNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA  253 (568)
T ss_pred             ECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence            88754 4555555567899999875432 222221111  111221   24445555444321  1235544544211 1


Q ss_pred             EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCcccee-EEEeeeCCeEEEecCCCCceEE
Q psy952          166 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHV-FALTLFEDHIYWTDWNTKSINR  244 (573)
Q Consensus       166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p-~~ia~~~~~lywtd~~~~~I~~  244 (573)
                      ...+. ...-..+--...|+..+.||++-.+.+.|..+++.......+.... ...| .|+++.-.+.  .|.....|.|
T Consensus       254 l~~~~-ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~--~dv~~cEi~R  329 (568)
T PTZ00420        254 LVTMS-IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI--CDVYKCEIGR  329 (568)
T ss_pred             eEEEE-ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc--cCchhhhHhH
Confidence            11110 1111111112557778999999888899999888654444333321 2222 4566544332  2333344555


Q ss_pred             EeccC
Q psy952          245 ADKFN  249 (573)
Q Consensus       245 ~~~~~  249 (573)
                      +-+.+
T Consensus       330 ~~kl~  334 (568)
T PTZ00420        330 VYKNE  334 (568)
T ss_pred             Hhhhc
Confidence            44443

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=94.65  E-value=0.021  Score=33.37  Aligned_cols=24  Identities=54%  Similarity=1.241  Sum_probs=19.9

Q ss_pred             CccccCCCCceecCCCcccccccc
Q psy952          367 GYYCECNTGYKLLEDGKACTDIDE  390 (573)
Q Consensus       367 ~~~C~C~~~f~c~~~~~c~~~~~~  390 (573)
                      +|.|.|+.||++..+++.|.|++|
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCCC
Confidence            478999999999887777887765

>KOG4328|consensus

Probab=94.63  E-value=1.6  Score=44.96  Aligned_cols=198  Identities=11%  Similarity=0.085  Sum_probs=109.0

Q ss_pred             CcceEEEEEEcCCC-EEEEEECCCCeEEEEEcCCC--cce-EEE-cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC
Q psy952           44 LLNVVAMDFHYKEN-RFYFADVAAKTIYRSRVGST--EKE-RVI-RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD  118 (573)
Q Consensus        44 ~~~~~~v~~d~~~~-~ly~~d~~~~~I~~~~~~g~--~~~-~i~-~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld  118 (573)
                      .+.+..|+|++..+ +|..+....|.|...++++.  ... +++ ...-..+.+|.+-+.+-.-+++-+..|.|.-.++.
T Consensus       186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~  265 (498)
T KOG4328|consen  186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE  265 (498)
T ss_pred             ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence            45688999999998 77777777789999998642  222 222 22223456677766555444444556777777777


Q ss_pred             CCceeEecc---CCCCcceEEEeCCCceEEEEe-cCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEe
Q psy952          119 GTNRKTLKT---AIQDPRGITLHPGIGYVYFSS-WNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       119 g~~~~~l~~---~~~~P~~Iavdp~~g~LYwtd-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      +...+++++   .-..-.++-+..+++.+|+.+ ++ .-.+.-..++|+....+.  .... ...+|++.|....++.+-
T Consensus       266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~--lh~k-KI~sv~~NP~~p~~laT~  341 (498)
T KOG4328|consen  266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLR--LHKK-KITSVALNPVCPWFLATA  341 (498)
T ss_pred             chhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhh--hhhc-ccceeecCCCCchheeec
Confidence            766555553   222345555666666666554 44 334444556676544433  1221 568999998888777766


Q ss_pred             CCCC--eEEEEeCCCCcEEEEEeCCccceeEEEeee---CCeEEEecCCCCceEEEe
Q psy952          195 AHLD--YIASVDLDGKHKHIVISGQKVPHVFALTLF---EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       195 ~~~~--~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~---~~~lywtd~~~~~I~~~~  246 (573)
                      ...+  +|+=++-=+....-++......++..-|.|   ++. .+|.-....|...+
T Consensus       342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~d  397 (498)
T KOG4328|consen  342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFD  397 (498)
T ss_pred             ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEee
Confidence            5444  455443222222212222112234444443   455 33433445555443

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=94.47  E-value=0.02  Score=38.92  Aligned_cols=34  Identities=41%  Similarity=0.997  Sum_probs=27.9

Q ss_pred             CccccCCCCCccCC--ccccCCCCccccCCCCceecC
Q psy952          346 VDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLE  380 (573)
Q Consensus       346 ~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~c~~  380 (573)
                      ++||.. ....|..  .|.|+.|+|.|.|+.+|+...
T Consensus         2 idEC~~-~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~   37 (42)
T PF07645_consen    2 IDECAE-GPHNCPENGTCVNTEGSYSCSCPPGYELND   37 (42)
T ss_dssp             SSTTTT-TSSSSSTTSEEEEETTEEEEEESTTEEECT
T ss_pred             ccccCC-CCCcCCCCCEEEcCCCCEEeeCCCCcEECC
Confidence            677877 5577874  899999999999999998543

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.34  E-value=0.15  Score=34.12  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             cCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEe
Q psy952           98 VGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLH  138 (573)
Q Consensus        98 ~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavd  138 (573)
                      .+++||+++...+.|.++++.......-+.....|++|+++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            36789999999999999998654433333445789999874

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0270|consensus

Probab=94.24  E-value=6.5  Score=40.48  Aligned_cols=146  Identities=12%  Similarity=0.046  Sum_probs=92.7

Q ss_pred             EEEEEe--cccEEEEEcCCCceeecc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC---CcceEEEcCCCCCcc
Q psy952           18 WLIFSN--KYYVRNMSLDATQYSLVH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS---TEKERVIRHDSHGLE   91 (573)
Q Consensus        18 ~l~~s~--~~~I~~i~l~g~~~~~~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g---~~~~~i~~~~~~~p~   91 (573)
                      -||++.  ...|...+++..+....+ ...+.+..|+|++.+..+.++....+++...+...   ...+ +-  -.+.++
T Consensus       257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~-wk--~~g~VE  333 (463)
T KOG0270|consen  257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE-WK--FDGEVE  333 (463)
T ss_pred             eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce-EE--eccceE
Confidence            344443  367777888765544333 34567889999999999999888888887777642   1111 11  124677


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCC--CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDG--TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR  167 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg--~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~  167 (573)
                      -++.++..-+.|+.-...|.++-+++..  .-.-++...-....||.+.+..-.|..|.. ....+..-++++...+.
T Consensus       334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s-~d~~Vklw~~~~~~~~~  410 (463)
T KOG0270|consen  334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS-TDKVVKLWKFDVDSPKS  410 (463)
T ss_pred             EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc-ccceEEEEeecCCCCcc
Confidence            7888887777777777777777777643  333334444445788888887777777753 34444444555554433

>KOG0291|consensus

Probab=94.08  E-value=11  Score=41.43  Aligned_cols=208  Identities=10%  Similarity=0.022  Sum_probs=119.3

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT  124 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~  124 (573)
                      ..+.+.+|++ +-.|.+++..++.++.+.+-+-..--.+..+-..+..+++...++.|-+.-+..+.+.|-...... -+
T Consensus       266 ~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-YV  343 (893)
T KOG0291|consen  266 SKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-YV  343 (893)
T ss_pred             cceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-ee
Confidence            3456666764 344555666666665555543221111222224666777777777777777777788777765432 12


Q ss_pred             ec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952          125 LK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS  202 (573)
Q Consensus       125 l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  202 (573)
                      +-  ........|++.| .|.+..|- +..++|..-++.-..-.+-+  ++.-....++.+. ..++..++-+-.++|..
T Consensus       344 lKQQgH~~~i~~l~YSp-Dgq~iaTG-~eDgKVKvWn~~SgfC~vTF--teHts~Vt~v~f~-~~g~~llssSLDGtVRA  418 (893)
T KOG0291|consen  344 LKQQGHSDRITSLAYSP-DGQLIATG-AEDGKVKVWNTQSGFCFVTF--TEHTSGVTAVQFT-ARGNVLLSSSLDGTVRA  418 (893)
T ss_pred             eeccccccceeeEEECC-CCcEEEec-cCCCcEEEEeccCceEEEEe--ccCCCceEEEEEE-ecCCEEEEeecCCeEEe
Confidence            22  3466678999999 45555554 34667776666544433333  3444445677776 44555555555666666


Q ss_pred             EeCC-CCcEEEEEeCCccceeEEEeee--CCeEEEecCCCCceEEEeccCCcceEEEcccC
Q psy952          203 VDLD-GKHKHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNGRDYRVLRNTT  260 (573)
Q Consensus       203 ~~~d-G~~~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~  260 (573)
                      .|+. +.+-+++.... -.+..-||++  ++-+.-.....-.|+..+..+|+...+|....
T Consensus       419 wDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE  478 (893)
T KOG0291|consen  419 WDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE  478 (893)
T ss_pred             eeecccceeeeecCCC-ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC
Confidence            6653 23334433221 2234567775  44444456666678888888898777775543

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.00  E-value=4.5  Score=44.71  Aligned_cols=160  Identities=10%  Similarity=0.120  Sum_probs=88.2

Q ss_pred             cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC-----------CCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA-----------AKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~-----------~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      .|+.++..+.. ..+..+. ......|++..+.||++...           .+.|+.+.+++.....  .. -..+..|+
T Consensus       380 ~Lwv~~~gg~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~-~g~Issl~  454 (591)
T PRK13616        380 SLWVGPLGGVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RV-PGPISELQ  454 (591)
T ss_pred             EEEEEeCCCcc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--cc-CCCcCeEE
Confidence            56666664443 2222221 23445688776777766322           2456655565543332  11 13578888


Q ss_pred             EeecCCcEEEEeCCCCeEEE---EEcCCCceeE-----eccCCCC-cceEEEeCCCceEEEEecCCcCeEEEEeccCCCc
Q psy952           95 VDWVGRKLYWLDRHSKQLDV---AELDGTNRKT-----LKTAIQD-PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF  165 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~---~~ldg~~~~~-----l~~~~~~-P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~  165 (573)
                      +-+.+.+|.+.-.  ++|++   ...++...+.     |...+.. +..++=-. .+.|++...+....++++.+||...
T Consensus       455 wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~V~~~~~~~~v~~v~vDG~~~  531 (591)
T PRK13616        455 LSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT-GDSLVVGRSDPEHPVWYVNLDGSNS  531 (591)
T ss_pred             ECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceEec-CCEEEEEecCCCCceEEEecCCccc
Confidence            8888888877653  56776   4433333222     2234443 35554333 3446666544456789999999886


Q ss_pred             EEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952          166 TRILTHEDDIAWPNALTLDYFTERLYWADAH  196 (573)
Q Consensus       166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~  196 (573)
                      +.+.  ..++..| ..+|......||++|..
T Consensus       532 ~~~~--~~n~~~~-v~~vaa~~~~iyv~~~~  559 (591)
T PRK13616        532 DALP--SRNLSAP-VVAVAASPSTVYVTDAR  559 (591)
T ss_pred             cccC--CCCccCc-eEEEecCCceEEEEcCC
Confidence            6533  3444444 34444445679988754

>KOG0286|consensus

Probab=93.96  E-value=6.7  Score=38.33  Aligned_cols=157  Identities=13%  Similarity=0.097  Sum_probs=91.9

Q ss_pred             CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEeccCCCCcceEEEeCCCceEE
Q psy952           67 KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLKTAIQDPRGITLHPGIGYVY  145 (573)
Q Consensus        67 ~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~~~~~~P~~Iavdp~~g~LY  145 (573)
                      ......++..+.....+......+-+|++-+...+.|++-.-......-++. |..+..+...-...+.|.+.| .|+-|
T Consensus       166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~af  244 (343)
T KOG0286|consen  166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAF  244 (343)
T ss_pred             ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCee
Confidence            3444555554444444444456788888888789999997665555555543 455566666777889999999 78888


Q ss_pred             EEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEE
Q psy952          146 FSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFAL  225 (573)
Q Consensus       146 wtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~i  225 (573)
                      .|-. ..+...-.++.......+......+...+++++. ..+||.++-.....+.+-+.--..+.-++.+. -.+...|
T Consensus       245 atGS-DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl  321 (343)
T KOG0286|consen  245 ATGS-DDATCRLYDLRADQELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCL  321 (343)
T ss_pred             eecC-CCceeEEEeecCCcEEeeeccCcccCCceeEEEc-ccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEE
Confidence            8863 3555555555543333333222333444688887 56777776555555555443333333333332 2344444


Q ss_pred             ee
Q psy952          226 TL  227 (573)
Q Consensus       226 a~  227 (573)
                      .+
T Consensus       322 ~~  323 (343)
T KOG0286|consen  322 GV  323 (343)
T ss_pred             EE
Confidence            44

>KOG0270|consensus

Probab=93.93  E-value=8.7  Score=39.60  Aligned_cols=155  Identities=12%  Similarity=0.102  Sum_probs=99.0

Q ss_pred             EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC---Cc---
Q psy952           48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG---TN---  121 (573)
Q Consensus        48 ~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg---~~---  121 (573)
                      .+|++......|..+-.....|...+++......++...-..+..|++.+....+..+-+..+++...+..-   ..   
T Consensus       247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w  326 (463)
T KOG0270|consen  247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW  326 (463)
T ss_pred             HHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence            467777777788888888889999999987776666644478888999888888888887778887777641   11   


Q ss_pred             -----eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952          122 -----RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH  196 (573)
Q Consensus       122 -----~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~  196 (573)
                           ++.+.-....|..+.+....|.|||.|.+..         |.-.-.+.....   ...||.+......|..+...
T Consensus       327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~---------~~~vwt~~AHd~---~ISgl~~n~~~p~~l~t~s~  394 (463)
T KOG0270|consen  327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP---------GKPVWTLKAHDD---EISGLSVNIQTPGLLSTAST  394 (463)
T ss_pred             EeccceEEEEecCCCceeEEEecCCceEEeeecCCC---------CCceeEEEeccC---CcceEEecCCCCcceeeccc
Confidence                 1112223334566666666777777775432         111122221122   23577777666677777666


Q ss_pred             CCeEEEEeCCCCcEEEEE
Q psy952          197 LDYIASVDLDGKHKHIVI  214 (573)
Q Consensus       197 ~~~I~~~~~dG~~~~~l~  214 (573)
                      .+.+..-++++.+.+.+.
T Consensus       395 d~~Vklw~~~~~~~~~v~  412 (463)
T KOG0270|consen  395 DKVVKLWKFDVDSPKSVK  412 (463)
T ss_pred             cceEEEEeecCCCCcccc
Confidence            666666666666654444

>KOG0266|consensus

Probab=93.86  E-value=11  Score=40.43  Aligned_cols=202  Identities=13%  Similarity=0.143  Sum_probs=114.2

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEc-CC-CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC-Cc
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRV-GS-TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG-TN  121 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~-~g-~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg-~~  121 (573)
                      ..+..++|-+.. .+.++-.....|+..++ +. ....++. .....+..++|.+.+ +++++-...+.|.+-++.+ ..
T Consensus       204 ~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~  280 (456)
T KOG0266|consen  204 RGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC  280 (456)
T ss_pred             cceeeeEECCCC-cEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE
Confidence            347789998744 45556566677777777 33 3334333 334678999999988 7888877888999988875 45


Q ss_pred             eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE--EEEecCCCCCC--C-ceEEEeccCCeEEEEeCC
Q psy952          122 RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT--RILTHEDDIAW--P-NALTLDYFTERLYWADAH  196 (573)
Q Consensus       122 ~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~--~l~~~~~~l~~--P-~glaiD~~~~~LYw~D~~  196 (573)
                      .++|...-....++++.+. +.++++- +....|...++......  ..+   .....  | .-+.+++ +++..|+-..
T Consensus       281 ~~~l~~hs~~is~~~f~~d-~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~fsp-~~~~ll~~~~  354 (456)
T KOG0266|consen  281 VRKLKGHSDGISGLAFSPD-GNLLVSA-SYDGTIRVWDLETGSKLCLKLL---SGAENSAPVTSVQFSP-NGKYLLSASL  354 (456)
T ss_pred             EEeeeccCCceEEEEECCC-CCEEEEc-CCCccEEEEECCCCceeeeecc---cCCCCCCceeEEEECC-CCcEEEEecC
Confidence            5555555556788999984 5555555 33667777777665522  222   22222  3 4555554 4444444445


Q ss_pred             CCeEEEEeCCCCcEEEEEeCCccc--eeEEEeee-CCeEEEecCCCCceEEEeccCCcceEE
Q psy952          197 LDYIASVDLDGKHKHIVISGQKVP--HVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRV  255 (573)
Q Consensus       197 ~~~I~~~~~dG~~~~~l~~~~~~~--~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~  255 (573)
                      .+.+...++..........+....  -.+..... ++.+..+-.....|+..+..++..+..
T Consensus       355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~  416 (456)
T KOG0266|consen  355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR  416 (456)
T ss_pred             CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh
Confidence            556666666633222222211011  12222222 344444444555666666555443333

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=93.81  E-value=6.6  Score=42.89  Aligned_cols=50  Identities=16%  Similarity=0.089  Sum_probs=27.8

Q ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEe
Q psy952           49 AMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD  106 (573)
Q Consensus        49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td  106 (573)
                      .++||++.+.|||.--+..-     ..+..+   -..++..-.=||+|..++++-|.-
T Consensus       238 ~~s~D~~~~lvy~~tGnp~p-----~~~~~r---~gdnl~~~s~vAld~~TG~~~W~~  287 (527)
T TIGR03075       238 TGSYDPETNLIYFGTGNPSP-----WNSHLR---PGDNLYTSSIVARDPDTGKIKWHY  287 (527)
T ss_pred             ceeEcCCCCeEEEeCCCCCC-----CCCCCC---CCCCccceeEEEEccccCCEEEee
Confidence            56899999999986533211     111111   011122223377888888888864

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG4378|consensus

Probab=93.70  E-value=6.4  Score=41.16  Aligned_cols=194  Identities=8%  Similarity=0.025  Sum_probs=112.3

Q ss_pred             CCEEEEEECCCC-eEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEe-CCCCeEEEEEcCCCceeEec--cCCCC
Q psy952           56 ENRFYFADVAAK-TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD-RHSKQLDVAELDGTNRKTLK--TAIQD  131 (573)
Q Consensus        56 ~~~ly~~d~~~~-~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td-~~~~~I~~~~ldg~~~~~l~--~~~~~  131 (573)
                      ...+|....+.+ .+..+++...-....+......+.++.+.|...  |++. +..|.|.+..+....+.+-+  .....
T Consensus        89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~De--yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs  166 (673)
T KOG4378|consen   89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDE--YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS  166 (673)
T ss_pred             hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcc--eeEEeccCCcEEEEecccCccccceecCCCCe
Confidence            445787766544 444455553222223333345677777776544  4443 33456777776655544433  22334


Q ss_pred             cceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE
Q psy952          132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYIASVDLDGKHK  210 (573)
Q Consensus       132 P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~  210 (573)
                      .|-|-.+|.++.|..+- +..+.+...+..|.....-.  .+.-..| .||.+.+.+..|+++-....+|..++......
T Consensus       167 vRll~ys~skr~lL~~a-sd~G~VtlwDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s  243 (673)
T KOG4378|consen  167 VRLLRYSPSKRFLLSIA-SDKGAVTLWDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS  243 (673)
T ss_pred             EEEeecccccceeeEee-ccCCeEEEEeccCCCcccch--hhhccCCcCcceecCCccceEEEecccceEEEeecccccc
Confidence            56777788787777665 34566666666665543333  3334455 59999999999999998888999888763222


Q ss_pred             EEEEeCCccceeE-EEeee-CCeEEEecCCCCceEEEeccCC-cceEEEc
Q psy952          211 HIVISGQKVPHVF-ALTLF-EDHIYWTDWNTKSINRADKFNG-RDYRVLR  257 (573)
Q Consensus       211 ~~l~~~~~~~~p~-~ia~~-~~~lywtd~~~~~I~~~~~~~g-~~~~~l~  257 (573)
                      ..-+.   ..+|+ .|++- .+.+..+-..+++|+..+...- ..+.++.
T Consensus       244 ~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s  290 (673)
T KOG4378|consen  244 TDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS  290 (673)
T ss_pred             cceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee
Confidence            11111   23564 45553 4556666666777777664332 2344443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=93.43  E-value=6.7  Score=36.60  Aligned_cols=130  Identities=9%  Similarity=0.077  Sum_probs=77.9

Q ss_pred             CCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC-CCCeEEEEEcCCCceeEeccCCCCcce
Q psy952           56 ENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR-HSKQLDVAELDGTNRKTLKTAIQDPRG  134 (573)
Q Consensus        56 ~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~-~~~~I~~~~ldg~~~~~l~~~~~~P~~  134 (573)
                      +++-|+..   ..|++++..+.....+-...-..+..++..+.++.+.+... ....|...++.+.....+..  .....
T Consensus        31 ~~ks~~~~---~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~--~~~n~  105 (194)
T PF08662_consen   31 SGKSYYGE---FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT--QPRNT  105 (194)
T ss_pred             CcceEEee---EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC--CCceE
Confidence            44445433   35777776665554443222234778888888888776643 34578888887555444432  23567


Q ss_pred             EEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEe
Q psy952          135 ITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       135 Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      |..+|...+|..+..+. .+.|...++.  ..+.+.  .........++.+|++..|..+.
T Consensus       106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~--~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  106 ISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKKKIS--TFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             EEECCCCCEEEEEEccCCCcEEEEEECC--CCEEee--ccccCcEEEEEEcCCCCEEEEEE
Confidence            99999777777776443 3557666665  444444  23333456777777666665554

>KOG0281|consensus

Probab=93.20  E-value=0.8  Score=45.37  Aligned_cols=193  Identities=15%  Similarity=0.101  Sum_probs=114.6

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCce
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNR  122 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~  122 (573)
                      ...+.-|.||-   ...++....+.|...+.+...-..++....+.+--|.+|   ++|.++-+...+|.+-+.+ |...
T Consensus       197 skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  197 SKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             CCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchh
Confidence            34455666652   233444455566666665433222333333455555555   4588888888888888875 5556


Q ss_pred             eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC----cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952          123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN----FTRILTHEDDIAWPNALTLDYFTERLYWADAHLD  198 (573)
Q Consensus       123 ~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~----~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~  198 (573)
                      ++++..-...-++.+.  +|+|.-..  ....|.+-+|+...    +.+++   ......+-  +|++ .++.++-++..
T Consensus       271 ~tlihHceaVLhlrf~--ng~mvtcS--kDrsiaVWdm~sps~it~rrVLv---GHrAaVNv--Vdfd-~kyIVsASgDR  340 (499)
T KOG0281|consen  271 NTLIHHCEAVLHLRFS--NGYMVTCS--KDRSIAVWDMASPTDITLRRVLV---GHRAAVNV--VDFD-DKYIVSASGDR  340 (499)
T ss_pred             hHHhhhcceeEEEEEe--CCEEEEec--CCceeEEEeccCchHHHHHHHHh---hhhhheee--eccc-cceEEEecCCc
Confidence            6677666667788776  46654333  35567777776544    23333   22222333  4433 44556666677


Q ss_pred             eEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          199 YIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       199 ~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      +|..-+.+...-..++    ..|-.|||-  +.+++.++-...++|...+...|.-.++|
T Consensus       341 TikvW~~st~efvRtl----~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvL  396 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTL----NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL  396 (499)
T ss_pred             eEEEEeccceeeehhh----hcccccceehhccCeEEEecCCCceEEEEeccccHHHHHH
Confidence            7777666544332222    236677775  78999999988889888887777644443

>smart00284 OLF Olfactomedin-like domains

Probab=93.00  E-value=5.3  Score=38.81  Aligned_cols=140  Identities=13%  Similarity=0.153  Sum_probs=78.8

Q ss_pred             CCEEEEEECCCCeEEEEEcCCCcce--EEEcC-C----------CCCcceeEEeecCC-cEEEEeCCCCeEEEEEcCCCc
Q psy952           56 ENRFYFADVAAKTIYRSRVGSTEKE--RVIRH-D----------SHGLEGLAVDWVGR-KLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        56 ~~~ly~~d~~~~~I~~~~~~g~~~~--~i~~~-~----------~~~p~glavD~~~~-~LY~td~~~~~I~~~~ldg~~  121 (573)
                      ++.||+.-.....|.|+++......  .++.. +          -..-..||+|..+= -||-|....+.|.+..|+-..
T Consensus        83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~t  162 (255)
T smart00284       83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPAT  162 (255)
T ss_pred             CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCccc
Confidence            5899998888889999999876543  33321 1          11224688885332 245556667889998888655


Q ss_pred             eeEec---cCCCCcc-eEEEeCCCceEEEEecCC--cCeEE-EEeccCCCcEEE-EecCCCCCCCceEEEeccCCeEEEE
Q psy952          122 RKTLK---TAIQDPR-GITLHPGIGYVYFSSWNL--QAYIG-KIGMDGSNFTRI-LTHEDDIAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       122 ~~~l~---~~~~~P~-~Iavdp~~g~LYwtd~~~--~~~I~-r~~ldG~~~~~l-~~~~~~l~~P~glaiD~~~~~LYw~  193 (573)
                      ..+..   +....+. +=|+- .=|.||.++...  ..+|. ..+........+ +.-......-..|...|.+++||.=
T Consensus       163 L~ve~tW~T~~~k~sa~naFm-vCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~w  241 (255)
T smart00284      163 LTIENTWITTYNKRSASNAFM-ICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAW  241 (255)
T ss_pred             ceEEEEEEcCCCcccccccEE-EeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEE
Confidence            54433   2333222 11222 158999998522  33443 334443322211 1001112222458888999999986


Q ss_pred             eCC
Q psy952          194 DAH  196 (573)
Q Consensus       194 D~~  196 (573)
                      |.+
T Consensus       242 dng  244 (255)
T smart00284      242 NNG  244 (255)
T ss_pred             eCC
Confidence            643

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=92.93  E-value=13  Score=38.53  Aligned_cols=61  Identities=15%  Similarity=0.181  Sum_probs=40.6

Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcc
Q psy952          187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD  252 (573)
Q Consensus       187 ~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~  252 (573)
                      +++||++.. .+.++.++........-..   ......+++.+++||+.. ..+.|+.+++.+|+.
T Consensus       241 ~~~vy~~~~-~g~l~a~d~~tG~~~W~~~---~~~~~~p~~~~~~vyv~~-~~G~l~~~d~~tG~~  301 (377)
T TIGR03300       241 GGQVYAVSY-QGRVAALDLRSGRVLWKRD---ASSYQGPAVDDNRLYVTD-ADGVVVALDRRSGSE  301 (377)
T ss_pred             CCEEEEEEc-CCEEEEEECCCCcEEEeec---cCCccCceEeCCEEEEEC-CCCeEEEEECCCCcE
Confidence            678998764 4678888875333222111   233445667889999986 457899999878764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.91  E-value=11  Score=37.62  Aligned_cols=158  Identities=13%  Similarity=0.065  Sum_probs=92.1

Q ss_pred             EEeecCCcEEEEe----CCCCeEEEEEcCCCceeE--eccCCCCcceEEEeCCCceEEEEecCC--c-------------
Q psy952           94 AVDWVGRKLYWLD----RHSKQLDVAELDGTNRKT--LKTAIQDPRGITLHPGIGYVYFSSWNL--Q-------------  152 (573)
Q Consensus        94 avD~~~~~LY~td----~~~~~I~~~~ldg~~~~~--l~~~~~~P~~Iavdp~~g~LYwtd~~~--~-------------  152 (573)
                      +|...++.||.|+    .+.+.|.|.+.....+++  +-+....|..|.+.|....|.+++.+.  .             
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM  136 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM  136 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence            3555688899986    456899999998555443  336677899999999777999998652  1             


Q ss_pred             -CeEEEE-eccCCCcEEEEecCCCC--CCCceEEEeccCCeEEEEeCCCC-------eEEEEeCCCCcEEEEEeCC----
Q psy952          153 -AYIGKI-GMDGSNFTRILTHEDDI--AWPNALTLDYFTERLYWADAHLD-------YIASVDLDGKHKHIVISGQ----  217 (573)
Q Consensus       153 -~~I~r~-~ldG~~~~~l~~~~~~l--~~P~glaiD~~~~~LYw~D~~~~-------~I~~~~~dG~~~~~l~~~~----  217 (573)
                       +.|..+ ..+|....... ....+  ..-.-|+++. .+.++++....+       .|...+.++. .+.+....    
T Consensus       137 ~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~  213 (305)
T PF07433_consen  137 QPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWR  213 (305)
T ss_pred             CCceEEEecCCCceeeeee-cCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHH
Confidence             122222 22233222211 01111  1235678874 566666644332       2333333332 22221110    


Q ss_pred             -ccceeEEEeeeC--CeEEEecCCCCceEEEeccCCcceE
Q psy952          218 -KVPHVFALTLFE--DHIYWTDWNTKSINRADKFNGRDYR  254 (573)
Q Consensus       218 -~~~~p~~ia~~~--~~lywtd~~~~~I~~~~~~~g~~~~  254 (573)
                       .-.+.-+|++..  +.+.+|-...+.+...+..+|..+.
T Consensus       214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence             024566788854  4688999898999888877776444

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.81  E-value=0.48  Score=31.61  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=30.2

Q ss_pred             CCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEe
Q psy952           55 KENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVD   96 (573)
Q Consensus        55 ~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD   96 (573)
                      .+++||+++...+.|..+++........+..+ ..|.+|+++
T Consensus         2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~   42 (42)
T TIGR02276         2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence            57889999999999999998654433334444 689998874

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG1539|consensus

Probab=92.72  E-value=17  Score=40.53  Aligned_cols=156  Identities=17%  Similarity=0.057  Sum_probs=84.2

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc---CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR---HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT  120 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~---~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~  120 (573)
                      ..++.+|+++.=++..|+ ....+.|-++++.++-...-..   ..-..+.|||+|-.+ ++.++-...|.+..-++.+.
T Consensus       448 ~~~~~av~vs~CGNF~~I-G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k  525 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFI-GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKK  525 (910)
T ss_pred             CcceEEEEEeccCceEEE-eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCc
Confidence            355788888877766665 4567789999997653322221   112578999999654 45565555666766666655


Q ss_pred             ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeE
Q psy952          121 NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI  200 (573)
Q Consensus       121 ~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  200 (573)
                      ....-+.-...+.+|..+-..+.+-.+-  ..-.|..+++--......+  ...-..-+.+++.+++++|..+. ..++|
T Consensus       526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~--ddf~I~vvD~~t~kvvR~f--~gh~nritd~~FS~DgrWlisas-mD~tI  600 (910)
T KOG1539|consen  526 VLKKSLRLGSSITGIVYHRVSDLLAIAL--DDFSIRVVDVVTRKVVREF--WGHGNRITDMTFSPDGRWLISAS-MDSTI  600 (910)
T ss_pred             ceeeeeccCCCcceeeeeehhhhhhhhc--CceeEEEEEchhhhhhHHh--hccccceeeeEeCCCCcEEEEee-cCCcE
Confidence            4211111112234444433322221111  1234444443221111111  12334457899998888777765 44667


Q ss_pred             EEEeCC
Q psy952          201 ASVDLD  206 (573)
Q Consensus       201 ~~~~~d  206 (573)
                      ...|+-
T Consensus       601 r~wDlp  606 (910)
T KOG1539|consen  601 RTWDLP  606 (910)
T ss_pred             EEEecc
Confidence            776654

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=92.67  E-value=0.32  Score=38.69  Aligned_cols=43  Identities=14%  Similarity=0.148  Sum_probs=36.6

Q ss_pred             CCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC
Q psy952           33 DATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG   75 (573)
Q Consensus        33 ~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~   75 (573)
                      ++++...++.++..|.||++++.++.||+++...+.|+.+...
T Consensus        42 d~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~   84 (86)
T PF01731_consen   42 DGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH   84 (86)
T ss_pred             eCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence            4455667788899999999999999999999999999887753

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0277|consensus

Probab=92.67  E-value=9.9  Score=36.49  Aligned_cols=165  Identities=10%  Similarity=0.116  Sum_probs=92.4

Q ss_pred             CCCCCCCceeeCCCCCCEEEEEe--------cccEEEEEcC-CCceeec--ccCCcceEEEEEEcCCCEEEEEECCCCeE
Q psy952            1 MPGWDESTCKRRDSIKPWLIFSN--------KYYVRNMSLD-ATQYSLV--HQDLLNVVAMDFHYKENRFYFADVAAKTI   69 (573)
Q Consensus         1 ~~g~dg~~C~~~~~~~~~l~~s~--------~~~I~~i~l~-g~~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I   69 (573)
                      +||+.|-+=+-..-.+..|.+|.        ..+|+.++++ +......  ........+|++......+.++-.+.+++
T Consensus         6 tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSL   85 (311)
T KOG0277|consen    6 TPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSL   85 (311)
T ss_pred             cCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceE
Confidence            57887777766554555566554        3466777764 2222211  22234467888888777777777888888


Q ss_pred             EEEEcCCCcceEEEcCCCCCcceeEEee--cCCcEEEEeCCCCeEEEEEcCC-CceeEeccCCCCcceEEEeCCCceEEE
Q psy952           70 YRSRVGSTEKERVIRHDSHGLEGLAVDW--VGRKLYWLDRHSKQLDVAELDG-TNRKTLKTAIQDPRGITLHPGIGYVYF  146 (573)
Q Consensus        70 ~~~~~~g~~~~~i~~~~~~~p~glavD~--~~~~LY~td~~~~~I~~~~ldg-~~~~~l~~~~~~P~~Iavdp~~g~LYw  146 (573)
                      +..++.-.. ..|..-.-+.-+=.++||  +.+..+++.+..++|..-+.+- ..+.++...-.-..+.+.+|....||-
T Consensus        86 rl~d~~~~s-~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa  164 (311)
T KOG0277|consen   86 RLFDLTMPS-KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFA  164 (311)
T ss_pred             EEeccCCCC-cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEE
Confidence            877743221 122211112333345554  5677888888888776555442 233333333333666777777777776


Q ss_pred             EecCC-cCeEEEEeccCCCcE
Q psy952          147 SSWNL-QAYIGKIGMDGSNFT  166 (573)
Q Consensus       147 td~~~-~~~I~r~~ldG~~~~  166 (573)
                      +-.+. .-+|+-+...|+...
T Consensus       165 s~Sgd~~l~lwdvr~~gk~~~  185 (311)
T KOG0277|consen  165 SASGDGTLRLWDVRSPGKFMS  185 (311)
T ss_pred             EccCCceEEEEEecCCCceeE
Confidence            65442 234554444454433

>KOG2106|consensus

Probab=92.07  E-value=16  Score=38.49  Aligned_cols=55  Identities=9%  Similarity=-0.008  Sum_probs=32.7

Q ss_pred             EEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEE
Q psy952           18 WLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR   73 (573)
Q Consensus        18 ~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~   73 (573)
                      +++-+.++.|..-.+...-...+.-......|++.++ ...+|.+-...+.+...+
T Consensus       342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~  396 (626)
T KOG2106|consen  342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN  396 (626)
T ss_pred             EEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc
Confidence            5555667888877776542222222233578999987 455666665555554444

>KOG0293|consensus

Probab=92.06  E-value=16  Score=37.48  Aligned_cols=203  Identities=11%  Similarity=0.087  Sum_probs=115.1

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK  123 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~  123 (573)
                      ..+..|.|.|...+|.-.. ....+...+.+.+........++ ..+...+--+.+ .=+++-+..+.|...++||....
T Consensus       270 ~~V~yi~wSPDdryLlaCg-~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~  347 (519)
T KOG0293|consen  270 QPVSYIMWSPDDRYLLACG-FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILG  347 (519)
T ss_pred             CceEEEEECCCCCeEEecC-chHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhh
Confidence            3456788888777665443 23357777777665544444331 244444444433 33677777889999999997633


Q ss_pred             Eec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952          124 TLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS  202 (573)
Q Consensus       124 ~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  202 (573)
                      .-- ........||+.+...+|+...  ...+|.-.+.....-+.++.   .-..-..+.|. .++++..+.-....|..
T Consensus       348 ~W~gvr~~~v~dlait~Dgk~vl~v~--~d~~i~l~~~e~~~dr~lis---e~~~its~~iS-~d~k~~LvnL~~qei~L  421 (519)
T KOG0293|consen  348 NWEGVRDPKVHDLAITYDGKYVLLVT--VDKKIRLYNREARVDRGLIS---EEQPITSFSIS-KDGKLALVNLQDQEIHL  421 (519)
T ss_pred             cccccccceeEEEEEcCCCcEEEEEe--cccceeeechhhhhhhcccc---ccCceeEEEEc-CCCcEEEEEcccCeeEE
Confidence            221 1234467999999888888776  35566666655444333441   11223577776 56777777777777777


Q ss_pred             EeCCCCcEEEEE--eCCccceeEEEe-eeC---CeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          203 VDLDGKHKHIVI--SGQKVPHVFALT-LFE---DHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       203 ~~~dG~~~~~l~--~~~~~~~p~~ia-~~~---~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      -++.  ..+++.  .+... .-+-|- -|+   +.+.-+-...+.|+.-++.+|+...+|..
T Consensus       422 WDl~--e~~lv~kY~Ghkq-~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG  480 (519)
T KOG0293|consen  422 WDLE--ENKLVRKYFGHKQ-GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG  480 (519)
T ss_pred             eecc--hhhHHHHhhcccc-cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence            6665  111111  11101 111111 122   23444455666777777777776666544

>KOG0282|consensus

Probab=91.91  E-value=7.7  Score=40.39  Aligned_cols=195  Identities=11%  Similarity=0.051  Sum_probs=102.2

Q ss_pred             CCCceeeCCCCCCEEEEEe--cccEEEEEcCC--CceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce
Q psy952            5 DESTCKRRDSIKPWLIFSN--KYYVRNMSLDA--TQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE   80 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~--~~~I~~i~l~g--~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~   80 (573)
                      +|.++...--....|+.+.  ...|+...+-+  .-++.....-..+..+.|.. .+.-|.+-.-...|.-.+++.+...
T Consensus       215 kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~  293 (503)
T KOG0282|consen  215 KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVL  293 (503)
T ss_pred             cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccceEE
Confidence            4555554432244555554  35566555533  22222211122245666664 4444444444556666666655443


Q ss_pred             EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcC-eEEEE
Q psy952           81 RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQA-YIGKI  158 (573)
Q Consensus        81 ~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~-~I~r~  158 (573)
                      .-+..+ ..|.-+.+.+.+.++|++-...++|...+..... +......+.....|.+-+ .|.=|++...... +|+-.
T Consensus       294 ~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~  371 (503)
T KOG0282|consen  294 SRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWEN  371 (503)
T ss_pred             EEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEc
Confidence            334333 4677778887788999999888999888875433 222334666677788776 4445555422211 22211


Q ss_pred             eccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC
Q psy952          159 GMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD  206 (573)
Q Consensus       159 ~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d  206 (573)
                      .. +...+.++  ......--.|++. .++..+.+....+.|..+...
T Consensus       372 ~~-~v~ik~i~--~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~ifs~~  415 (503)
T KOG0282|consen  372 RI-PVPIKNIA--DPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIFSTV  415 (503)
T ss_pred             CC-Cccchhhc--chhhccCcceecC-CCCCeehhhccCceEEEEecc
Confidence            11 11112222  1222222246665 456667777777777776543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=91.81  E-value=2.6  Score=39.16  Aligned_cols=66  Identities=15%  Similarity=0.210  Sum_probs=43.3

Q ss_pred             EeecCCcEEEEeCCCCeEEEEEcCCCceeEec--c-----------CCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--T-----------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~-----------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      +.|+.+.||---..+.+|.+++++...+...+  +           ...-++|||.+|..+++|+|-. .-+.+.-+.++
T Consensus       181 LE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK-~wp~lfEVk~~  259 (262)
T COG3823         181 LEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK-LWPLLFEVKLD  259 (262)
T ss_pred             eeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC-cCceeEEEEec
Confidence            34667777765555678888888755544322  1           2223899999999999999963 24555555444

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.70  E-value=15  Score=36.58  Aligned_cols=224  Identities=11%  Similarity=0.047  Sum_probs=131.6

Q ss_pred             CCEEEEEec--ccEEEEEcCCCcee-eccc-CCcceEE-EEEEcCCCEEEEEEC----CCCeEEEEEcCCCcc--eEEEc
Q psy952           16 KPWLIFSNK--YYVRNMSLDATQYS-LVHQ-DLLNVVA-MDFHYKENRFYFADV----AAKTIYRSRVGSTEK--ERVIR   84 (573)
Q Consensus        16 ~~~l~~s~~--~~I~~i~l~g~~~~-~~~~-~~~~~~~-v~~d~~~~~ly~~d~----~~~~I~~~~~~g~~~--~~i~~   84 (573)
                      ...++|+.+  ....+++..+.... .+.. ......| -+|.+....||-+..    ..+.|.+++...+..  ..+-+
T Consensus        17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s   96 (305)
T PF07433_consen   17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS   96 (305)
T ss_pred             CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence            457778875  56777888655443 2222 2222222 347888888999854    357899999873322  22333


Q ss_pred             CCCCCcceeEEeecCCcEEEEeCCC------C-----------eEEEE-EcCCCceeE--ecc--CCCCcceEEEeCCCc
Q psy952           85 HDSHGLEGLAVDWVGRKLYWLDRHS------K-----------QLDVA-ELDGTNRKT--LKT--AIQDPRGITLHPGIG  142 (573)
Q Consensus        85 ~~~~~p~glavD~~~~~LY~td~~~------~-----------~I~~~-~ldg~~~~~--l~~--~~~~P~~Iavdp~~g  142 (573)
                      .+ -.|.-|.+.+.+..|-+++.+-      +           .+..+ ..+|.....  |-.  .....|.||+++ .|
T Consensus        97 ~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G  174 (305)
T PF07433_consen   97 HG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DG  174 (305)
T ss_pred             CC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CC
Confidence            44 4799999998888999987431      1           12223 223443333  111  223589999998 57


Q ss_pred             eEEEEecCC------cCeEEEEeccCCCcEEEEecCC----CC-CCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEE
Q psy952          143 YVYFSSWNL------QAYIGKIGMDGSNFTRILTHED----DI-AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH  211 (573)
Q Consensus       143 ~LYwtd~~~------~~~I~r~~ldG~~~~~l~~~~~----~l-~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~  211 (573)
                      .+.+...-.      .+-|.....++. .+.+-. ..    .+ ..--.|+++...+.+.++....+.+...+.....  
T Consensus       175 ~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~-p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~--  250 (305)
T PF07433_consen  175 TVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPA-PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR--  250 (305)
T ss_pred             cEEEEEecCCCCCccCCeEEEEcCCCc-ceeccC-ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC--
Confidence            777765321      234444444433 222210 11    11 2334799997778888998888888888654332  


Q ss_pred             EEEeCCccceeEEEeeeCCeEEEecCCCCceEEEec
Q psy952          212 IVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       212 ~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~  247 (573)
                      .+.... ++...||+...+.+.||. +.+.|.+...
T Consensus       251 ~~~~~~-l~D~cGva~~~~~f~~ss-G~G~~~~~~~  284 (305)
T PF07433_consen  251 LLGSVP-LPDACGVAPTDDGFLVSS-GQGQLIRLSP  284 (305)
T ss_pred             Eeeccc-cCceeeeeecCCceEEeC-CCccEEEccC
Confidence            233222 678899998777744554 5667766653

>KOG0315|consensus

Probab=91.64  E-value=13  Score=35.61  Aligned_cols=182  Identities=11%  Similarity=0.069  Sum_probs=113.2

Q ss_pred             CCEEEEEec--ccEEEEEcC-CCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC--CCCCc
Q psy952           16 KPWLIFSNK--YYVRNMSLD-ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH--DSHGL   90 (573)
Q Consensus        16 ~~~l~~s~~--~~I~~i~l~-g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~--~~~~p   90 (573)
                      .+.||++..  +.|+-..+. |.=...+-..-..+..|.+-+..+.|-.  .....|+.++++.++...+.+-  .-+.+
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAa--a~~qhvRlyD~~S~np~Pv~t~e~h~kNV   86 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAA--AGNQHVRLYDLNSNNPNPVATFEGHTKNV   86 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhh--ccCCeeEEEEccCCCCCceeEEeccCCce
Confidence            345666553  567666554 4333444344456778888776655544  3556788888887765444322  23577


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRIL  169 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~  169 (573)
                      ..+.|...++.+| |-+..+.+.+-++.......+.+...-.+.|.++|..+.|+..|.  .+.|..-++.... ...++
T Consensus        87 taVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq--sg~irvWDl~~~~c~~~li  163 (311)
T KOG0315|consen   87 TAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ--SGNIRVWDLGENSCTHELI  163 (311)
T ss_pred             EEEEEeecCeEEE-ecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC--CCcEEEEEccCCccccccC
Confidence            7888886665555 556778777777766554445554456789999999999999995  4566666664332 23344


Q ss_pred             ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952          170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL  205 (573)
Q Consensus       170 ~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~  205 (573)
                        .+....-..|++++++.+|--+. ..+..+.-++
T Consensus       164 --Pe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l  196 (311)
T KOG0315|consen  164 --PEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRL  196 (311)
T ss_pred             --CCCCcceeeEEEcCCCcEEEEec-CCccEEEEEc
Confidence              45556667899997666554443 4444444443

>KOG0286|consensus

Probab=91.52  E-value=15  Score=36.03  Aligned_cols=209  Identities=13%  Similarity=0.128  Sum_probs=116.7

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCC-eEEEEEcC---CCc-ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAK-TIYRSRVG---STE-KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL  117 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~-~I~~~~~~---g~~-~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l  117 (573)
                      .-..+...||.|.++.|--....+. .||.+...   |.. +...+...-.......|  +.+...+|-++..+...-++
T Consensus        96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f--~dD~~ilT~SGD~TCalWDi  173 (343)
T KOG0286|consen   96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF--LDDNHILTGSGDMTCALWDI  173 (343)
T ss_pred             CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEE--cCCCceEecCCCceEEEEEc
Confidence            3455778888887766554443332 45555532   111 11112111122333333  22445566666666666666


Q ss_pred             CCCc-eeEeccCCCCcceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC
Q psy952          118 DGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA  195 (573)
Q Consensus       118 dg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~  195 (573)
                      .... ..++........+|+|.|.+++.|++-.-. ..+|+=+ .+|.-++.+...+.++   +.+.+- .++.-|.+-+
T Consensus       174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~-R~~~c~qtF~ghesDI---Nsv~ff-P~G~afatGS  248 (343)
T KOG0286|consen  174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV-RSGQCVQTFEGHESDI---NSVRFF-PSGDAFATGS  248 (343)
T ss_pred             ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec-cCcceeEeeccccccc---ceEEEc-cCCCeeeecC
Confidence            5443 444556777899999999999999996432 3344433 2345555555323333   566654 3455566666


Q ss_pred             CCCeEEEEeCCCCcEEEEEeCC-ccceeEEEee-eCCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          196 HLDYIASVDLDGKHKHIVISGQ-KVPHVFALTL-FEDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       196 ~~~~I~~~~~dG~~~~~l~~~~-~~~~p~~ia~-~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      .......+++.......+++.. ......++++ ..++|.++-.....+.+=+...++.+.+|..
T Consensus       249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G  313 (343)
T KOG0286|consen  249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG  313 (343)
T ss_pred             CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec
Confidence            6777777777654444444422 1334467776 4677777766666666666566665555543

>KOG0293|consensus

Probab=91.47  E-value=16  Score=37.54  Aligned_cols=73  Identities=11%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG  119 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg  119 (573)
                      ..+...+|-+...+ |++....+.|...++||......-......+..||+-+.+..||.... ..+|..++...
T Consensus       313 ~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~-d~~i~l~~~e~  385 (519)
T KOG0293|consen  313 FSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV-DKKIRLYNREA  385 (519)
T ss_pred             CCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec-ccceeeechhh
Confidence            34678888875544 777777889999999997544333333457788998888888887763 34565555544

>KOG0646|consensus

Probab=91.39  E-value=20  Score=37.28  Aligned_cols=196  Identities=12%  Similarity=0.044  Sum_probs=102.0

Q ss_pred             eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC------CC
Q psy952           47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD------GT  120 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld------g~  120 (573)
                      +.+|+-++ .+...++....+.||-..+..+..-.++......+.-|.|- ..+.+++|-+..+.|.+-.+-      ..
T Consensus        84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~  161 (476)
T KOG0646|consen   84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADND  161 (476)
T ss_pred             eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccC
Confidence            45777665 45555555567789999987765433344344556666665 467788888777777654331      11


Q ss_pred             -ceeEe---ccCCCCcceEEEeC--CCceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952          121 -NRKTL---KTAIQDPRGITLHP--GIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       121 -~~~~l---~~~~~~P~~Iavdp--~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~~P~glaiD~~~~~LYw~  193 (573)
                       ..+.+   ........+|.+.+  .+.+||-+..  ...|...++.+.. ...++    .-..++++++|+.+.++|+.
T Consensus       162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~--D~t~k~wdlS~g~LLlti~----fp~si~av~lDpae~~~yiG  235 (476)
T KOG0646|consen  162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE--DRTIKLWDLSLGVLLLTIT----FPSSIKAVALDPAERVVYIG  235 (476)
T ss_pred             CCccceeeeccCcceeEEEEecCCCccceEEEecC--CceEEEEEeccceeeEEEe----cCCcceeEEEcccccEEEec
Confidence             11111   12222244444443  2345554432  2223333333221 11111    12345799999988888876


Q ss_pred             eCCCCeEEEEeCCCCc-----------------EEEEEeCCccceeEEEee-eCCeEEEecCCCCceEEEeccCCc
Q psy952          194 DAHLDYIASVDLDGKH-----------------KHIVISGQKVPHVFALTL-FEDHIYWTDWNTKSINRADKFNGR  251 (573)
Q Consensus       194 D~~~~~I~~~~~dG~~-----------------~~~l~~~~~~~~p~~ia~-~~~~lywtd~~~~~I~~~~~~~g~  251 (573)
                      . ..+.|+..++.+..                 +..+..+..-....-|++ .++.|..+-...+.|..-+..+-.
T Consensus       236 t-~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q  310 (476)
T KOG0646|consen  236 T-EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ  310 (476)
T ss_pred             C-CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence            4 45677777665432                 111211110013344566 566777776666666655544433

>KOG1274|consensus

Probab=91.25  E-value=30  Score=39.10  Aligned_cols=148  Identities=11%  Similarity=0.059  Sum_probs=92.5

Q ss_pred             eEEEEEEcCCCEEEEEECCCCeEEEEEcCC--CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952           47 VVAMDFHYKENRFYFADVAAKTIYRSRVGS--TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT  124 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~  124 (573)
                      ...|.||+.+..|+..+... .|.+++...  ..+++|-..+ ..+.++|.+   .+.|.+-+..+.|.++..+......
T Consensus        16 ~t~i~~d~~gefi~tcgsdg-~ir~~~~~sd~e~P~ti~~~g-~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~   90 (933)
T KOG1274|consen   16 LTLICYDPDGEFICTCGSDG-DIRKWKTNSDEEEPETIDISG-ELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDT   90 (933)
T ss_pred             eEEEEEcCCCCEEEEecCCC-ceEEeecCCcccCCchhhccC-ceeEEEeec---ccceEEeeccceEEEeeCCCCCccc
Confidence            57889999999888887543 466555433  3445444233 355666664   3467777888999999988777666


Q ss_pred             eccCCCC-cceEEEeCCCceEEEEecCCcCeEEEEecc-CCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeEE
Q psy952          125 LKTAIQD-PRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYIA  201 (573)
Q Consensus       125 l~~~~~~-P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I~  201 (573)
                      |+..+.- .+.++|+. .|.+..+- +..-.|...+++ ++..+++    ..+..| .+|.+|+.+..|-++ ..+|.|.
T Consensus        91 iL~Rftlp~r~~~v~g-~g~~iaag-sdD~~vK~~~~~D~s~~~~l----rgh~apVl~l~~~p~~~fLAvs-s~dG~v~  163 (933)
T KOG1274|consen   91 ILARFTLPIRDLAVSG-SGKMIAAG-SDDTAVKLLNLDDSSQEKVL----RGHDAPVLQLSYDPKGNFLAVS-SCDGKVQ  163 (933)
T ss_pred             eeeeeeccceEEEEec-CCcEEEee-cCceeEEEEeccccchheee----cccCCceeeeeEcCCCCEEEEE-ecCceEE
Confidence            6655544 57788887 45554444 234456666655 4444443    344455 478888655555444 3566777


Q ss_pred             EEeCC
Q psy952          202 SVDLD  206 (573)
Q Consensus       202 ~~~~d  206 (573)
                      ..+++
T Consensus       164 iw~~~  168 (933)
T KOG1274|consen  164 IWDLQ  168 (933)
T ss_pred             EEEcc
Confidence            77665

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=91.05  E-value=21  Score=36.94  Aligned_cols=106  Identities=16%  Similarity=0.150  Sum_probs=60.9

Q ss_pred             CceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccc
Q psy952          141 IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVP  220 (573)
Q Consensus       141 ~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~  220 (573)
                      .+.||++..  ...++..++....  ++.  ......+..++++  +++||+.+ ..+.|..++.+......-.....-.
T Consensus       241 ~~~vy~~~~--~g~l~a~d~~tG~--~~W--~~~~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~~~~~  311 (377)
T TIGR03300       241 GGQVYAVSY--QGRVAALDLRSGR--VLW--KRDASSYQGPAVD--DNRLYVTD-ADGVVVALDRRSGSELWKNDELKYR  311 (377)
T ss_pred             CCEEEEEEc--CCEEEEEECCCCc--EEE--eeccCCccCceEe--CCEEEEEC-CCCeEEEEECCCCcEEEccccccCC
Confidence            578888774  4567777764222  222  1223334455555  78999986 4678889888543321111110001


Q ss_pred             eeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          221 HVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       221 ~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      ...+.++.++.||..+ .++.|+.++..+|+....+
T Consensus       312 ~~ssp~i~g~~l~~~~-~~G~l~~~d~~tG~~~~~~  346 (377)
T TIGR03300       312 QLTAPAVVGGYLVVGD-FEGYLHWLSREDGSFVARL  346 (377)
T ss_pred             ccccCEEECCEEEEEe-CCCEEEEEECCCCCEEEEE
Confidence            1123345688899886 4578888888888765443

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=91.01  E-value=26  Score=37.91  Aligned_cols=30  Identities=10%  Similarity=0.145  Sum_probs=22.0

Q ss_pred             EEeeeCCeEEEecCCCCceEEEeccCCcceE
Q psy952          224 ALTLFEDHIYWTDWNTKSINRADKFNGRDYR  254 (573)
Q Consensus       224 ~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~  254 (573)
                      .+++.++.||+.+ ..+.|+.+++.+|+.+-
T Consensus       401 ~~~~~g~~v~~g~-~dG~l~ald~~tG~~lW  430 (488)
T cd00216         401 SLATAGNLVFAGA-ADGYFRAFDATTGKELW  430 (488)
T ss_pred             ceEecCCeEEEEC-CCCeEEEEECCCCceee
Confidence            3556778888877 56788888888887553

The alignment model contains an 8-bladed beta-propeller.

>KOG0650|consensus

Probab=91.01  E-value=8.7  Score=41.17  Aligned_cols=72  Identities=13%  Similarity=0.230  Sum_probs=51.7

Q ss_pred             CCcceEEEeCCCceEEEEecCCcCeEEEEeccCC-CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC
Q psy952          130 QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS-NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGK  208 (573)
Q Consensus       130 ~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~-~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~  208 (573)
                      ..|..+.++|..-+||++..   ..|...++.-. ..+.+.   ++..|-..|+|++.+++|+... ..+++-.+++|-+
T Consensus       567 G~vq~v~FHPs~p~lfVaTq---~~vRiYdL~kqelvKkL~---tg~kwiS~msihp~GDnli~gs-~d~k~~WfDldls  639 (733)
T KOG0650|consen  567 GLVQRVKFHPSKPYLFVATQ---RSVRIYDLSKQELVKKLL---TGSKWISSMSIHPNGDNLILGS-YDKKMCWFDLDLS  639 (733)
T ss_pred             CceeEEEecCCCceEEEEec---cceEEEehhHHHHHHHHh---cCCeeeeeeeecCCCCeEEEec-CCCeeEEEEcccC
Confidence            34889999999999999983   33444444322 223333   6778889999999888888764 5677888888854

>KOG0279|consensus

Probab=90.85  E-value=17  Score=35.43  Aligned_cols=204  Identities=14%  Similarity=0.094  Sum_probs=125.0

Q ss_pred             eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-----eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC-
Q psy952           47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-----ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT-  120 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~-  120 (573)
                      +.+++.-.....+|++-.....|...++...+.     ...+...-+.+.++++-. .++.+++-+..+.+..-++.+. 
T Consensus        18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~   96 (315)
T KOG0279|consen   18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGE   96 (315)
T ss_pred             EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCc
Confidence            455665555556666666666666666654321     112222245677788764 4566777777788888898764 


Q ss_pred             ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC-CCCCceEEEeccCCeEEEEeCCC-C
Q psy952          121 NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD-IAWPNALTLDYFTERLYWADAHL-D  198 (573)
Q Consensus       121 ~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~-l~~P~glaiD~~~~~LYw~D~~~-~  198 (573)
                      ..+.+........++||++.+..| ++-. +...|.-.+.-|.-..++.  ... -.|.+-+.+.|.+...|++.... +
T Consensus        97 ~t~~f~GH~~dVlsva~s~dn~qi-vSGS-rDkTiklwnt~g~ck~t~~--~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk  172 (315)
T KOG0279|consen   97 STRRFVGHTKDVLSVAFSTDNRQI-VSGS-RDKTIKLWNTLGVCKYTIH--EDSHREWVSCVRFSPNESNPIIVSASWDK  172 (315)
T ss_pred             EEEEEEecCCceEEEEecCCCcee-ecCC-CcceeeeeeecccEEEEEe--cCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence            444555677788999999966554 4442 3456766666666655665  333 67778888888776666666654 4


Q ss_pred             eEEEEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          199 YIASVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       199 ~I~~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      .+..-++++-..+.-..+. ......+++ .++.|-.+-.+.+.++--+...++....+
T Consensus       173 tvKvWnl~~~~l~~~~~gh-~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl  230 (315)
T KOG0279|consen  173 TVKVWNLRNCQLRTTFIGH-SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL  230 (315)
T ss_pred             eEEEEccCCcchhhccccc-cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence            5666677775544333232 345556666 34556555555666666666666654443

>KOG1407|consensus

Probab=90.79  E-value=16  Score=35.20  Aligned_cols=208  Identities=10%  Similarity=0.133  Sum_probs=108.9

Q ss_pred             eeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-
Q psy952            9 CKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-   87 (573)
Q Consensus         9 C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-   87 (573)
                      |.+ +.+..|...+....|++.+.-.......+..-..-+-+.|-+.++++-+.+... .|.-++....  ..+....+ 
T Consensus        72 w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD-~it~id~r~~--~~~~~~~~~  147 (313)
T KOG1407|consen   72 WDP-KHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDD-RITFIDARTY--KIVNEEQFK  147 (313)
T ss_pred             eCC-CCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc-cEEEEEeccc--ceeehhccc
Confidence            443 345556665667788888886555444333333334566777777777766544 3443333221  11111111 


Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      ....-++.. ..+.|||...+.|.|+++......+ ..|-....+-.-|.+||.++++  +-.+..+.+.--+++-..-.
T Consensus       148 ~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gryf--A~GsADAlvSLWD~~ELiC~  224 (313)
T KOG1407|consen  148 FEVNEISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYF--ATGSADALVSLWDVDELICE  224 (313)
T ss_pred             ceeeeeeec-CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceE--eeccccceeeccChhHhhhh
Confidence            233445554 6788999999999999988653222 2233344566789999965543  32222222222223322222


Q ss_pred             EEEecCCCCCCCc-eEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCCccceeEEEeeeCC
Q psy952          167 RILTHEDDIAWPN-ALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQKVPHVFALTLFED  230 (573)
Q Consensus       167 ~l~~~~~~l~~P~-glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~~  230 (573)
                      ..+   +.+.||. .|.+.+. +++.-+-+....|-.+... |.....|....   .-+.+|....
T Consensus       225 R~i---sRldwpVRTlSFS~d-g~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk  283 (313)
T KOG1407|consen  225 RCI---SRLDWPVRTLSFSHD-GRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPK  283 (313)
T ss_pred             eee---ccccCceEEEEeccC-cceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCC
Confidence            233   5788884 6777754 4444333444556555554 44344443321   2355665543

>KOG3509|consensus

Probab=90.44  E-value=0.39  Score=54.65  Aligned_cols=79  Identities=33%  Similarity=0.759  Sum_probs=64.2

Q ss_pred             CCCCCCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCCCccC--CcCCCCCCcCCCCCCCccccCCccccCCCCCCCC
Q psy952          405 CHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCR--QRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRD  482 (573)
Q Consensus       405 C~~~~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~~~C~--~~~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d  482 (573)
                      +..+.++++ +|+|.++++.-.-+.||....|+.++.+....+.  ...|.+.++.|..  ..++.+.+..|+|.++|.+
T Consensus        27 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~--~~~~~~~~~~~~g~~~~~~  103 (964)
T KOG3509|consen   27 AIGSACSPN-EFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRD--RLRCNPQSFQCDGTNDCKD  103 (964)
T ss_pred             cccccCCcc-hhccCCccccCchhhhccccccCCCCCcCCccccccccccCCccccccc--chhcCCccccccCCCCCCc
Confidence            334567788 9999999999999999999999999966552222  2347788899985  3478889999999999999


Q ss_pred             CCCC
Q psy952          483 GSDE  486 (573)
Q Consensus       483 ~sDe  486 (573)
                      +++|
T Consensus       104 ~~~~  107 (964)
T KOG3509|consen  104 GSDE  107 (964)
T ss_pred             cchh
Confidence            9999

>KOG4649|consensus

Probab=90.38  E-value=18  Score=34.98  Aligned_cols=125  Identities=13%  Similarity=0.066  Sum_probs=69.3

Q ss_pred             eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCC-eEEEEEcCCCceeEe
Q psy952           47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSK-QLDVAELDGTNRKTL  125 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~-~I~~~~ldg~~~~~l  125 (573)
                      -.-.++|++.++|||-.+-..+|.-..        ++...+     +.+--.++.|||.+..+| .|+.+..-+....  
T Consensus        33 ~~~~avd~~sG~~~We~ilg~RiE~sa--------~vvgdf-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~--   97 (354)
T KOG4649|consen   33 GIVIAVDPQSGNLIWEAILGVRIECSA--------IVVGDF-----VVLGCYSGGLYFLCVKTGSQIWNFVILETVKV--   97 (354)
T ss_pred             ceEEEecCCCCcEEeehhhCceeeeee--------EEECCE-----EEEEEccCcEEEEEecchhheeeeeehhhhcc--
Confidence            345678899999999876655554321        222221     555667899999998777 6666554432210  


Q ss_pred             ccCCCCcceEEEeCCCceEEEE---------ecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952          126 KTAIQDPRGITLHPGIGYVYFS---------SWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH  196 (573)
Q Consensus       126 ~~~~~~P~~Iavdp~~g~LYwt---------d~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~  196 (573)
                              .-.+|+..|.||..         |..+...|++....|+.   +          .+-+|++-.+.||+|-. 
T Consensus        98 --------~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~---f----------~sP~i~~g~~sly~a~t-  155 (354)
T KOG4649|consen   98 --------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT---F----------VSPVIAPGDGSLYAAIT-  155 (354)
T ss_pred             --------ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce---e----------ccceecCCCceEEEEec-
Confidence                    11244445555544         33333344443333321   1          12356766788998864 


Q ss_pred             CCeEEEEeCCCC
Q psy952          197 LDYIASVDLDGK  208 (573)
Q Consensus       197 ~~~I~~~~~dG~  208 (573)
                      .+.+.++...-.
T Consensus       156 ~G~vlavt~~~~  167 (354)
T KOG4649|consen  156 AGAVLAVTKNPY  167 (354)
T ss_pred             cceEEEEccCCC
Confidence            455555555433

>KOG0289|consensus

Probab=90.25  E-value=25  Score=36.39  Aligned_cols=178  Identities=10%  Similarity=0.065  Sum_probs=96.4

Q ss_pred             CEEEEEecccEEEEEc--CCCceeecccC--CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcce
Q psy952           17 PWLIFSNKYYVRNMSL--DATQYSLVHQD--LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEG   92 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l--~g~~~~~~~~~--~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~g   92 (573)
                      .||+.++...-+.+..  +|..+..+...  .-.....+|++ ++.||-+-..++.|..+++.......-+...-+.+..
T Consensus       316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~  394 (506)
T KOG0289|consen  316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA  394 (506)
T ss_pred             cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence            5777766544444433  35555544332  22367888996 8899999999999999998764422222223356778


Q ss_pred             eEEeecCCcEEEEeCCCCeEEEEEcCCC-ceeEe-ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC-CCcEEEE
Q psy952           93 LAVDWVGRKLYWLDRHSKQLDVAELDGT-NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG-SNFTRIL  169 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~~I~~~~ldg~-~~~~l-~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG-~~~~~l~  169 (573)
                      |+|.. +|+...+....+.|...||.-. +.+++ +........+.+|....+|-..  +..-.|+...-.- +......
T Consensus       395 i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~--g~~l~Vy~~~k~~k~W~~~~~  471 (506)
T KOG0289|consen  395 ISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA--GSDLQVYICKKKTKSWTEIKE  471 (506)
T ss_pred             EEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee--cceeEEEEEecccccceeeeh
Confidence            88852 3333334445566777776532 22222 3444457889999866666544  3333444443222 1222211


Q ss_pred             ecCCCCC-CCceEEEeccCCeEEEEeCCCCeEEE
Q psy952          170 THEDDIA-WPNALTLDYFTERLYWADAHLDYIAS  202 (573)
Q Consensus       170 ~~~~~l~-~P~glaiD~~~~~LYw~D~~~~~I~~  202 (573)
                        ..... ..+++.+-  +.-.|.++...++|.+
T Consensus       472 --~~~~sg~st~v~Fg--~~aq~l~s~smd~~l~  501 (506)
T KOG0289|consen  472 --LADHSGLSTGVRFG--EHAQYLASTSMDAILR  501 (506)
T ss_pred             --hhhcccccceeeec--ccceEEeeccchhheE
Confidence              11221 23344433  5556666665555533

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=90.17  E-value=32  Score=37.60  Aligned_cols=20  Identities=15%  Similarity=0.323  Sum_probs=15.9

Q ss_pred             CcceEEEeCCCceEEEEecC
Q psy952          131 DPRGITLHPGIGYVYFSSWN  150 (573)
Q Consensus       131 ~P~~Iavdp~~g~LYwtd~~  150 (573)
                      +=.++|+||.++.||+-...
T Consensus       388 ~W~~~A~Dp~~g~~yvp~~~  407 (527)
T TIGR03075       388 NWQPMAYSPKTGLFYVPANE  407 (527)
T ss_pred             CCCCceECCCCCEEEEeccc
Confidence            34579999999999988643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=90.10  E-value=27  Score=36.54  Aligned_cols=104  Identities=16%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             CceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccc
Q psy952          141 IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVP  220 (573)
Q Consensus       141 ~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~  220 (573)
                      .+.||++..  ...+..+++....  ++-  ...+..+..++++  +++||+... .++|+.++.......--.....-.
T Consensus       256 ~~~vy~~~~--~g~l~ald~~tG~--~~W--~~~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~  326 (394)
T PRK11138        256 GGVVYALAY--NGNLVALDLRSGQ--IVW--KREYGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGVELWSQSDLLHR  326 (394)
T ss_pred             CCEEEEEEc--CCeEEEEECCCCC--EEE--eecCCCccCcEEE--CCEEEEEcC-CCeEEEEECCCCcEEEcccccCCC
Confidence            578888773  4567777664322  233  2233334455554  889999874 578888888644331111110001


Q ss_pred             eeEEEeeeCCeEEEecCCCCceEEEeccCCcceE
Q psy952          221 HVFALTLFEDHIYWTDWNTKSINRADKFNGRDYR  254 (573)
Q Consensus       221 ~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~  254 (573)
                      ...+.++.+++||+.+. .+.|+.++..+|+.+-
T Consensus       327 ~~~sp~v~~g~l~v~~~-~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        327 LLTAPVLYNGYLVVGDS-EGYLHWINREDGRFVA  359 (394)
T ss_pred             cccCCEEECCEEEEEeC-CCEEEEEECCCCCEEE
Confidence            12334567899998864 4678888888886543

>KOG0281|consensus

Probab=89.77  E-value=4.6  Score=40.24  Aligned_cols=208  Identities=11%  Similarity=0.090  Sum_probs=118.9

Q ss_pred             cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-eEEEcCCCCCcceeEEeecCCc
Q psy952           24 KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-ERVIRHDSHGLEGLAVDWVGRK  101 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~i~~~~~~~p~glavD~~~~~  101 (573)
                      .+.|+..+.....-. ++....+.+.-+.||.   +|.++......|...+.+.+.. .+++. .-..+-+|.|   ++.
T Consensus       216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlrf---~ng  288 (499)
T KOG0281|consen  216 DNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLRF---SNG  288 (499)
T ss_pred             cCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEEE---eCC
Confidence            355666655543322 2223344567777773   4888888888898888876543 33332 2245556665   456


Q ss_pred             EEEEeCCCCeEEEEEcCCCc----eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCC
Q psy952          102 LYWLDRHSKQLDVAELDGTN----RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIA  176 (573)
Q Consensus       102 LY~td~~~~~I~~~~ldg~~----~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~  176 (573)
                      +.+|-+..+.|.|-+++...    +++|+......+.+-+|.  . +.++-.+ ...|..-+++.-. .++|.      .
T Consensus       289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k-yIVsASg-DRTikvW~~st~efvRtl~------g  358 (499)
T KOG0281|consen  289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K-YIVSASG-DRTIKVWSTSTCEFVRTLN------G  358 (499)
T ss_pred             EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c-eEEEecC-CceEEEEeccceeeehhhh------c
Confidence            77788888899998887654    333444555555555553  3 3344333 4566666665332 22222      2


Q ss_pred             CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCC
Q psy952          177 WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       177 ~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g  250 (573)
                      .-.|||--...++|.++-+..++|...+..-+.--.++.+. ..-..-|. |+++=.++-.+.++|..-+..++
T Consensus       359 HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGH-EeLvRciR-Fd~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  359 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCIR-FDNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             ccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhch-HHhhhhee-ecCceeeeccccceEEEEecccc
Confidence            34688887789999999988899988887643322222221 01112222 34444455556666665554444

>KOG0263|consensus

Probab=89.76  E-value=24  Score=38.94  Aligned_cols=182  Identities=10%  Similarity=0.092  Sum_probs=103.2

Q ss_pred             CEEEEEec-ccEEEEEcCCCceeecccCCcce-EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           17 PWLIFSNK-YYVRNMSLDATQYSLVHQDLLNV-VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        17 ~~l~~s~~-~~I~~i~l~g~~~~~~~~~~~~~-~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      .||+-+.. ..|+-..|+.....+...+...| ..|.|.|. +.-|.+-...+.-..+..+-..+..|+...+..+.-++
T Consensus       464 rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~  542 (707)
T KOG0263|consen  464 RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVS  542 (707)
T ss_pred             cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhcccccccceEE
Confidence            45554443 46666666655444444444444 45777754 44444443444444444555566667777778888899


Q ss_pred             EeecCCcEEEEeCCCCeEEEEEc-CCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEEecC
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAEL-DGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHE  172 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~l-dg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~  172 (573)
                      |.+... .-.|.+...++..-+. .|..++++........+|++.|...+|-  ..+....|..-++.+.. ...+.   
T Consensus       543 FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La--Sg~ed~~I~iWDl~~~~~v~~l~---  616 (707)
T KOG0263|consen  543 FHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA--SGDEDGLIKIWDLANGSLVKQLK---  616 (707)
T ss_pred             ECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe--ecccCCcEEEEEcCCCcchhhhh---
Confidence            998443 3334455556665554 4555565555556678999999665553  32345566666665533 33333   


Q ss_pred             CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC
Q psy952          173 DDIAWPNALTLDYFTERLYWADAHLDYIASVDLD  206 (573)
Q Consensus       173 ~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d  206 (573)
                      ..-.....|++. .++.+.++....+.|..-++.
T Consensus       617 ~Ht~ti~SlsFS-~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  617 GHTGTIYSLSFS-RDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             cccCceeEEEEe-cCCCEEEecCCCCeEEEEEch
Confidence            112334567776 456666666666666555543

>KOG0308|consensus

Probab=89.72  E-value=19  Score=39.13  Aligned_cols=192  Identities=11%  Similarity=0.078  Sum_probs=113.1

Q ss_pred             CCCceeeCCCCCCEEEEEe--cccEEEEEcCCCce-------eecc-----cCCcceEEEEEEcCCCEEEEEECCCCeEE
Q psy952            5 DESTCKRRDSIKPWLIFSN--KYYVRNMSLDATQY-------SLVH-----QDLLNVVAMDFHYKENRFYFADVAAKTIY   70 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~--~~~I~~i~l~g~~~-------~~~~-----~~~~~~~~v~~d~~~~~ly~~d~~~~~I~   70 (573)
                      |-..|.+......+|+.+.  .+.|+..+++....       .+..     .....+.++|.. .++.++++....+-|+
T Consensus       118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N-~t~t~ivsGgtek~lr  196 (735)
T KOG0308|consen  118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLR  196 (735)
T ss_pred             chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC-CcceEEEecCcccceE
Confidence            4566777644455666554  47888888873311       1111     122346778766 4667888877777777


Q ss_pred             EEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEec
Q psy952           71 RSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSW  149 (573)
Q Consensus        71 ~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~  149 (573)
                      .++........-+...-..++.|-++..+.+|.-+ +..+.|.+-+|.-..- .+++-.-....++..+|.-..+|..+ 
T Consensus       197 ~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~-sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~-  274 (735)
T KOG0308|consen  197 LWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA-SSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG-  274 (735)
T ss_pred             EeccccccceeeeeccccceEEEEEcCCCCeEeec-CCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-
Confidence            77776543332233333577778887766666444 4567888888764332 23333333478889999888888876 


Q ss_pred             CCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952          150 NLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV  203 (573)
Q Consensus       150 ~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~  203 (573)
                       +...|+|.+|.-....+++  -..-..-.-|.++..+.-+ |+-.....|.+-
T Consensus       275 -rd~~i~~Tdl~n~~~~tli--ck~daPv~~l~~~~~~~~~-WvtTtds~I~rW  324 (735)
T KOG0308|consen  275 -RDGNIYRTDLRNPAKSTLI--CKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRW  324 (735)
T ss_pred             -CCCcEEecccCCchhheEe--ecCCCchhhhhhccccCCc-eeeeccccceec
Confidence             4678999999874434443  1211112345554334444 555555555553

>KOG0772|consensus

Probab=89.71  E-value=23  Score=37.44  Aligned_cols=199  Identities=12%  Similarity=0.097  Sum_probs=109.8

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-----ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-----KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL  117 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-----~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l  117 (573)
                      +-..+.++++|+.+-++| +..-...|..+++.|..     ...|....-+.++.|++...++.|.+.. +...+.+++-
T Consensus       166 gtk~Vsal~~Dp~GaR~~-sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs-g~aqakl~DR  243 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFV-SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS-GSAQAKLLDR  243 (641)
T ss_pred             CceEEEEeeecCCCceee-eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe-cCcceeEEcc
Confidence            334477999998665554 55555678888887743     2233344456788899987777766664 4557778888


Q ss_pred             CCCceeEeccC------CCC-------cceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEEEecCCCC--CCCceE
Q psy952          118 DGTNRKTLKTA------IQD-------PRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDI--AWPNAL  181 (573)
Q Consensus       118 dg~~~~~l~~~------~~~-------P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l~~~~~~l--~~P~gl  181 (573)
                      +|........+      +.+       ...-..+|.+...|.|-... .-+|+-.+---+..++|.....+.  ..|..-
T Consensus       244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC  323 (641)
T KOG0772|consen  244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC  323 (641)
T ss_pred             CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence            88776554432      221       22233477777778776322 235554443344455555211111  234566


Q ss_pred             EEeccCCeEEEEeCCCCeEEEEeCCCCcEE--EEEeCCccc--eeEEEee-eCCeEEEecCCCCceEE
Q psy952          182 TLDYFTERLYWADAHLDYIASVDLDGKHKH--IVISGQKVP--HVFALTL-FEDHIYWTDWNTKSINR  244 (573)
Q Consensus       182 aiD~~~~~LYw~D~~~~~I~~~~~dG~~~~--~l~~~~~~~--~p~~ia~-~~~~lywtd~~~~~I~~  244 (573)
                      ++++ ++.++-+--..+.|..-++.+..++  ..+....++  ....|++ +.+.+..+....+++..
T Consensus       324 ~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  324 AWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             ecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence            6664 4445544445677766665332222  222211122  4466666 45555556555555443

>KOG0272|consensus

Probab=89.57  E-value=27  Score=35.91  Aligned_cols=193  Identities=9%  Similarity=0.049  Sum_probs=103.9

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecC-CcEEEEeCCCCeEEEEEcCCCc-ee
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVG-RKLYWLDRHSKQLDVAELDGTN-RK  123 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~-~~LY~td~~~~~I~~~~ldg~~-~~  123 (573)
                      .|+....-...+.++.+-.-.|.....+...-.....+......+.++.+.+.. +.=..|-+..+.+....+++.. ..
T Consensus       176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~  255 (459)
T KOG0272|consen  176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ  255 (459)
T ss_pred             CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh
Confidence            354444444678888888888877777765544444444445788888888873 4444455566666666666642 22


Q ss_pred             EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEE
Q psy952          124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIA  201 (573)
Q Consensus       124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~  201 (573)
                      .|...+.....++++|...+|--+..-..-+|+=+.   +..+.+.. ...-....+|++.+ +|-|-.+-..  .++|+
T Consensus       256 ~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~---tk~ElL~Q-EGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvW  330 (459)
T KOG0272|consen  256 DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE---TKSELLLQ-EGHSKGVFSIAFQP-DGSLAATGGLDSLGRVW  330 (459)
T ss_pred             hhhcchhhheeeeecCCCceeeecccccchhhcccc---cchhhHhh-cccccccceeEecC-CCceeeccCccchhhee
Confidence            233466678899999965555333221122232111   11122221 22223335777774 4444443222  12333


Q ss_pred             EEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEe
Q psy952          202 SVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       202 ~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~  246 (573)
                        |+......+++.+. +...++|++. +|+..-|-...+.+..=+
T Consensus       331 --DlRtgr~im~L~gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWD  373 (459)
T KOG0272|consen  331 --DLRTGRCIMFLAGH-IKEILSVAFSPNGYHLATGSSDNTCKVWD  373 (459)
T ss_pred             --ecccCcEEEEeccc-ccceeeEeECCCceEEeecCCCCcEEEee
Confidence              33333333444443 6677888884 566777766555544333

>KOG0303|consensus

Probab=89.57  E-value=12  Score=38.03  Aligned_cols=159  Identities=13%  Similarity=0.107  Sum_probs=92.5

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-ee
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RK  123 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~  123 (573)
                      ..+.-|+|++.-..+..+-...+.|...++..+..-.-+. .-..+..|.+.+ .+.++.|-....+|.+.+..... +.
T Consensus       132 rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~  209 (472)
T KOG0303|consen  132 RRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVS  209 (472)
T ss_pred             eeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEee
Confidence            3456688999888888888888889888886544322222 224567778875 56677777777889998875433 22


Q ss_pred             Eec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc-EEEEecCCCCCCCceEE---EeccCCeEEEEeCCC
Q psy952          124 TLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF-TRILTHEDDIAWPNALT---LDYFTERLYWADAHL  197 (573)
Q Consensus       124 ~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~-~~l~~~~~~l~~P~gla---iD~~~~~LYw~D~~~  197 (573)
                      .-.  .+...++.|-+-  +|.|+-|-.+..+.-..+-.|-.+. +.+.  ...|..-+|+-   +|++.+.||.+--+.
T Consensus       210 e~~~heG~k~~Raifl~--~g~i~tTGfsr~seRq~aLwdp~nl~eP~~--~~elDtSnGvl~PFyD~dt~ivYl~GKGD  285 (472)
T KOG0303|consen  210 EGVAHEGAKPARAIFLA--SGKIFTTGFSRMSERQIALWDPNNLEEPIA--LQELDTSNGVLLPFYDPDTSIVYLCGKGD  285 (472)
T ss_pred             ecccccCCCcceeEEec--cCceeeeccccccccceeccCcccccCcce--eEEeccCCceEEeeecCCCCEEEEEecCC
Confidence            221  355557777775  4556666543211111111111110 0111  22333334443   367778888888777


Q ss_pred             CeEEEEeCCCCc
Q psy952          198 DYIASVDLDGKH  209 (573)
Q Consensus       198 ~~I~~~~~dG~~  209 (573)
                      +.|..+.+.-..
T Consensus       286 ~~IRYyEit~d~  297 (472)
T KOG0303|consen  286 SSIRYFEITNEP  297 (472)
T ss_pred             cceEEEEecCCC
Confidence            878777765544

>KOG0294|consensus

Probab=89.56  E-value=23  Score=35.08  Aligned_cols=222  Identities=13%  Similarity=0.080  Sum_probs=116.3

Q ss_pred             ceeeCCCCCCEEEEE-ecccEEEEEcCCC-ceeecccCCcceEEEEEEcCCCE-EEEEECCCCeEEEEEcCCCcceEE--
Q psy952            8 TCKRRDSIKPWLIFS-NKYYVRNMSLDAT-QYSLVHQDLLNVVAMDFHYKENR-FYFADVAAKTIYRSRVGSTEKERV--   82 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s-~~~~I~~i~l~g~-~~~~~~~~~~~~~~v~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~i--   82 (573)
                      +|.|..+  +|+.-. +...|+.+++... +.-.++...+.+.++-|+..... =.++-..++.|...+...  .+.+  
T Consensus        47 tavAVs~--~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~~s  122 (362)
T KOG0294|consen   47 TALAVSG--PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--WELLKS  122 (362)
T ss_pred             eEEEecc--eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC--eEEeee
Confidence            4555433  344432 2467888888654 33444555677888888765531 223444567777766642  2222  


Q ss_pred             EcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952           83 IRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG  162 (573)
Q Consensus        83 ~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG  162 (573)
                      +...-+.+.+|+|.+ .++|-.+-.+.+.+..-||-...+..+..--..+.-|..+|...+.|+.-   ..+|....++-
T Consensus       123 lK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~---~~~i~i~q~d~  198 (362)
T KOG0294|consen  123 LKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG---RNKIDIYQLDN  198 (362)
T ss_pred             ecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe---ccEEEEEeccc
Confidence            222335799999997 67788887777777766663222222222222355577777555455443   34555555553


Q ss_pred             CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCCccceeEEEeeeCC---eEEEecCC
Q psy952          163 SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQKVPHVFALTLFED---HIYWTDWN  238 (573)
Q Consensus       163 ~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~~---~lywtd~~  238 (573)
                      ......+   +.-..+.-++.. ..+.|++.- .+..|...|-| +.....+...  -.+..+|+++.+   ++.+|-..
T Consensus       199 A~v~~~i---~~~~r~l~~~~l-~~~~L~vG~-d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~~~~~~lvTaSS  271 (362)
T KOG0294|consen  199 ASVFREI---ENPKRILCATFL-DGSELLVGG-DNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTNPEHEYLVTASS  271 (362)
T ss_pred             HhHhhhh---hccccceeeeec-CCceEEEec-CCceEEEeccCCCccceeeecc--hhheeeeEEEecCCceEEEEecc
Confidence            3221111   111223344444 355666542 23566666666 3333332221  234566665433   56666655


Q ss_pred             CCceEE
Q psy952          239 TKSINR  244 (573)
Q Consensus       239 ~~~I~~  244 (573)
                      .+.|..
T Consensus       272 DG~I~v  277 (362)
T KOG0294|consen  272 DGFIKV  277 (362)
T ss_pred             CceEEE
Confidence            565543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=89.49  E-value=30  Score=36.19  Aligned_cols=134  Identities=12%  Similarity=0.122  Sum_probs=69.9

Q ss_pred             CCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCC--
Q psy952           99 GRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIA--  176 (573)
Q Consensus        99 ~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~--  176 (573)
                      ++.||++.. .+.+..+++...... -...+..+..++++  .+.||+...  ...|+.++.....  .+.. ...+.  
T Consensus       256 ~~~vy~~~~-~g~l~ald~~tG~~~-W~~~~~~~~~~~~~--~~~vy~~~~--~g~l~ald~~tG~--~~W~-~~~~~~~  326 (394)
T PRK11138        256 GGVVYALAY-NGNLVALDLRSGQIV-WKREYGSVNDFAVD--GGRIYLVDQ--NDRVYALDTRGGV--ELWS-QSDLLHR  326 (394)
T ss_pred             CCEEEEEEc-CCeEEEEECCCCCEE-EeecCCCccCcEEE--CCEEEEEcC--CCeEEEEECCCCc--EEEc-ccccCCC
Confidence            567787764 456777776432211 11122334445554  578998873  5677777775332  2221 11111  


Q ss_pred             CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE-EEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952          177 WPNALTLDYFTERLYWADAHLDYIASVDLDGKHK-HIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       177 ~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~  246 (573)
                      ...+.++.  +++||+.+. .+.|+.++.+.... ....... .....+.++.+++||+... .+.|+.+.
T Consensus       327 ~~~sp~v~--~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~~-~~~~s~P~~~~~~l~v~t~-~G~l~~~~  392 (394)
T PRK11138        327 LLTAPVLY--NGYLVVGDS-EGYLHWINREDGRFVAQQKVDS-SGFLSEPVVADDKLLIQAR-DGTVYAIT  392 (394)
T ss_pred             cccCCEEE--CCEEEEEeC-CCEEEEEECCCCCEEEEEEcCC-CcceeCCEEECCEEEEEeC-CceEEEEe
Confidence            11223332  788998864 56788887753332 2211111 1122334467889999853 45666654

>KOG4441|consensus

Probab=89.42  E-value=22  Score=39.21  Aligned_cols=163  Identities=11%  Similarity=0.087  Sum_probs=93.0

Q ss_pred             cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC-----CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC
Q psy952           26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA-----KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR  100 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~  100 (573)
                      .+.+++....+.+.+.+-...-.+++.-...+.||.+--..     ..|.+++......+.+..-. ..-.+.++=..++
T Consensus       350 ~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-~~r~~~gv~~~~g  428 (571)
T KOG4441|consen  350 SVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-TRRSGHGVAVLGG  428 (571)
T ss_pred             eEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC-cceeeeEEEEECC
Confidence            35566665555544322222222334444589999986433     36888888776666544222 2344555556789


Q ss_pred             cEEEEeC------CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC----cCeEEEEeccCCCcEEEEe
Q psy952          101 KLYWLDR------HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL----QAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus       101 ~LY~td~------~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~----~~~I~r~~ldG~~~~~l~~  170 (573)
                      +||.+-.      ...+++++++....-+.+.+-...-.+..+...++.||+.-...    ..++++.+.....-..+. 
T Consensus       429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-  507 (571)
T KOG4441|consen  429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-  507 (571)
T ss_pred             EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-
Confidence            9999864      23577888887665554443222222333444589999985321    235788877655443332 


Q ss_pred             cCCCCCCC---ceEEEeccCCeEEEEeC
Q psy952          171 HEDDIAWP---NALTLDYFTERLYWADA  195 (573)
Q Consensus       171 ~~~~l~~P---~glaiD~~~~~LYw~D~  195 (573)
                         .+..|   .|+++.  +++||+.-.
T Consensus       508 ---~m~~~rs~~g~~~~--~~~ly~vGG  530 (571)
T KOG4441|consen  508 ---PMTSPRSAVGVVVL--GGKLYAVGG  530 (571)
T ss_pred             ---cCccccccccEEEE--CCEEEEEec
Confidence               23223   356665  899998754

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.26  E-value=15  Score=38.12  Aligned_cols=144  Identities=11%  Similarity=0.050  Sum_probs=80.1

Q ss_pred             cCCcEEEEeCCCCeEEEEEcCCCceeE---ec---cCCCCcceEEEeCCCceEEEEecCCcCeEEEEec-cCCCcEEEEe
Q psy952           98 VGRKLYWLDRHSKQLDVAELDGTNRKT---LK---TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM-DGSNFTRILT  170 (573)
Q Consensus        98 ~~~~LY~td~~~~~I~~~~ldg~~~~~---l~---~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l-dG~~~~~l~~  170 (573)
                      ..+++|+. ...+.|..+++++....=   +.   ..+..|..++    .|.||+.++.  .+++..++ +|...=... 
T Consensus        67 ~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~----~G~i~~g~~~--g~~y~ld~~~G~~~W~~~-  138 (370)
T COG1520          67 GDGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS----DGKIYVGSWD--GKLYALDASTGTLVWSRN-  138 (370)
T ss_pred             eCCeEEEe-cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe----CCeEEEeccc--ceEEEEECCCCcEEEEEe-
Confidence            35777776 334567777776544221   11   1222233333    6889999864  37888888 676543332 


Q ss_pred             cCCC-CCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCC--ccceeEEEeeeCCeEEEecCC-CCceEEE
Q psy952          171 HEDD-IAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQ--KVPHVFALTLFEDHIYWTDWN-TKSINRA  245 (573)
Q Consensus       171 ~~~~-l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~--~~~~p~~ia~~~~~lywtd~~-~~~I~~~  245 (573)
                       ... +.+..+..+  .++.+|+.. ..+.++.++.+ |..+-..-...  .+....+.++.++.+|++... +..++.+
T Consensus       139 -~~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~  214 (370)
T COG1520         139 -VGGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYAL  214 (370)
T ss_pred             -cCCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEE
Confidence             222 112223333  367788764 45788888887 65543322210  122222333678888988553 4468888


Q ss_pred             eccCCcce
Q psy952          246 DKFNGRDY  253 (573)
Q Consensus       246 ~~~~g~~~  253 (573)
                      +..+|...
T Consensus       215 ~~~~G~~~  222 (370)
T COG1520         215 NAEDGTLK  222 (370)
T ss_pred             EccCCcEe
Confidence            87777654

>KOG0276|consensus

Probab=89.16  E-value=37  Score=36.86  Aligned_cols=156  Identities=12%  Similarity=0.064  Sum_probs=85.5

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR  122 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~  122 (573)
                      ...+-+|+++|.+-.+.-+ .-+|.+...+.+... ...+-...+ -++.-.|= ...+-.++-+....|.+++.+...+
T Consensus        13 SdRVKsVd~HPtePw~la~-LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfi-aRknWiv~GsDD~~IrVfnynt~ek   89 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPWILAA-LYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFI-ARKNWIVTGSDDMQIRVFNYNTGEK   89 (794)
T ss_pred             CCceeeeecCCCCceEEEe-eecCeeEEEecccceeeeeeeeccc-chhhheee-eccceEEEecCCceEEEEeccccee
Confidence            3445677777655444333 334455555544321 111211111 11222221 2345556777788999999986543


Q ss_pred             -eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952          123 -KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA  201 (573)
Q Consensus       123 -~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~  201 (573)
                       +++-......|.|||+|..-++.  ..++.-.|..-+.++......+- +..-+....+++.|.+..-|.+-.-.++|-
T Consensus        90 V~~FeAH~DyIR~iavHPt~P~vL--tsSDDm~iKlW~we~~wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVK  166 (794)
T KOG0276|consen   90 VKTFEAHSDYIRSIAVHPTLPYVL--TSSDDMTIKLWDWENEWACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVK  166 (794)
T ss_pred             eEEeeccccceeeeeecCCCCeEE--ecCCccEEEEeeccCceeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEE
Confidence             44446777799999999654433  32345566666666655333220 333445568888888887777766555444


Q ss_pred             EEeC
Q psy952          202 SVDL  205 (573)
Q Consensus       202 ~~~~  205 (573)
                      .-.+
T Consensus       167 VWsl  170 (794)
T KOG0276|consen  167 VWSL  170 (794)
T ss_pred             EEEc
Confidence            4444

>KOG4649|consensus

Probab=89.01  E-value=21  Score=34.56  Aligned_cols=139  Identities=14%  Similarity=0.079  Sum_probs=72.3

Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR  167 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~  167 (573)
                      +.-.-+|||+..++|||--.-..+|+-...       ++.++     ++|--.+|.|||.+......|+....-+.... 
T Consensus        31 Hs~~~~avd~~sG~~~We~ilg~RiE~sa~-------vvgdf-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-   97 (354)
T KOG4649|consen   31 HSGIVIAVDPQSGNLIWEAILGVRIECSAI-------VVGDF-----VVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-   97 (354)
T ss_pred             CCceEEEecCCCCcEEeehhhCceeeeeeE-------EECCE-----EEEEEccCcEEEEEecchhheeeeeehhhhcc-
Confidence            344568999999999998776677764221       11111     55666788999998765556665543332211 


Q ss_pred             EEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe----CCccceeEEEeeeCCeEEEecCCCCceE
Q psy952          168 ILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS----GQKVPHVFALTLFEDHIYWTDWNTKSIN  243 (573)
Q Consensus       168 l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~----~~~~~~p~~ia~~~~~lywtd~~~~~I~  243 (573)
                                  .-..|++++.||- -+.++..+..|+....-  +..    +..+..| .|+.-.+.||++- ..++|.
T Consensus        98 ------------~a~~d~~~glIyc-gshd~~~yalD~~~~~c--VykskcgG~~f~sP-~i~~g~~sly~a~-t~G~vl  160 (354)
T KOG4649|consen   98 ------------RAQCDFDGGLIYC-GSHDGNFYALDPKTYGC--VYKSKCGGGTFVSP-VIAPGDGSLYAAI-TAGAVL  160 (354)
T ss_pred             ------------ceEEcCCCceEEE-ecCCCcEEEecccccce--EEecccCCceeccc-eecCCCceEEEEe-ccceEE
Confidence                        1123333333332 23333444433322111  111    1101111 2333456788875 347788


Q ss_pred             EEeccCCcceEEE
Q psy952          244 RADKFNGRDYRVL  256 (573)
Q Consensus       244 ~~~~~~g~~~~~l  256 (573)
                      ++++.++...+..
T Consensus       161 avt~~~~~~~~~w  173 (354)
T KOG4649|consen  161 AVTKNPYSSTEFW  173 (354)
T ss_pred             EEccCCCCcceeh
Confidence            8888777554444

>KOG0294|consensus

Probab=88.97  E-value=26  Score=34.80  Aligned_cols=210  Identities=12%  Similarity=0.079  Sum_probs=105.7

Q ss_pred             CcceEEEEEEcCCCEEEEEEC-CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC--cEEEEeCCCCeEEEEEcCCC
Q psy952           44 LLNVVAMDFHYKENRFYFADV-AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR--KLYWLDRHSKQLDVAELDGT  120 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~-~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~--~LY~td~~~~~I~~~~ldg~  120 (573)
                      ...+.+||++.    .|++.. ....|..+++......-.+....+.+..|.++.-..  +| .+-+..|.|.+.+...-
T Consensus        43 ~~sitavAVs~----~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shL-lS~sdDG~i~iw~~~~W  117 (362)
T KOG0294|consen   43 AGSITALAVSG----PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHL-LSGSDDGHIIIWRVGSW  117 (362)
T ss_pred             ccceeEEEecc----eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhhe-eeecCCCcEEEEEcCCe
Confidence            34577888763    566554 456899999875433222222346788888875432  33 34445677777665432


Q ss_pred             c-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEec-cCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952          121 N-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM-DGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD  198 (573)
Q Consensus       121 ~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l-dG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~  198 (573)
                      . ...+-..-....+|+|+| .+.|-.+-.+ ...+..-+| .|....++-    --..|.-+.+++.+.+.|+.-  .+
T Consensus       118 ~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~-D~~lr~WNLV~Gr~a~v~~----L~~~at~v~w~~~Gd~F~v~~--~~  189 (362)
T KOG0294|consen  118 ELLKSLKAHKGQVTDLSIHP-SGKLALSVGG-DQVLRTWNLVRGRVAFVLN----LKNKATLVSWSPQGDHFVVSG--RN  189 (362)
T ss_pred             EEeeeecccccccceeEecC-CCceEEEEcC-CceeeeehhhcCccceeec----cCCcceeeEEcCCCCEEEEEe--cc
Confidence            1 122334445589999999 6777666533 333433333 343322221    123345577777666666543  45


Q ss_pred             eEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeee
Q psy952          199 YIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVY  269 (573)
Q Consensus       199 ~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~  269 (573)
                      +|..+.++-...-..+...  ..+.-+.+. ++.|++. ..+..|...+-.++.....+.....+..+|+.|
T Consensus       190 ~i~i~q~d~A~v~~~i~~~--~r~l~~~~l~~~~L~vG-~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~  258 (362)
T KOG0294|consen  190 KIDIYQLDNASVFREIENP--KRILCATFLDGSELLVG-GDNEWISLKDTDSDTPLTEFLAHENRVKDIASY  258 (362)
T ss_pred             EEEEEecccHhHhhhhhcc--ccceeeeecCCceEEEe-cCCceEEEeccCCCccceeeecchhheeeeEEE
Confidence            6666655543321111111  233444443 4445444 233455554433333333333323333344433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=88.76  E-value=25  Score=34.34  Aligned_cols=207  Identities=14%  Similarity=0.091  Sum_probs=109.5

Q ss_pred             ceEEEEEEcCCCEEEEEE--CCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEE--EcCCCc
Q psy952           46 NVVAMDFHYKENRFYFAD--VAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVA--ELDGTN  121 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d--~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~--~ldg~~  121 (573)
                      .+..+++.+..+.+.++.  .....++....++.....+...   ....-++|.. +.|+..+.......+.  ..+|..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~---~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG---SLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC---ccccccccCC-CCEEEEEcCCCceEEEEecCCCcc
Confidence            466777777777777766  5566788887765544433222   3344467865 6777776554444333  234544


Q ss_pred             eeEec--cCCC-CcceEEEeCCCceEE-EEecCCcCeEEEEec--cCCC-cEEEEe----cCCCCCCCceEEEeccCCeE
Q psy952          122 RKTLK--TAIQ-DPRGITLHPGIGYVY-FSSWNLQAYIGKIGM--DGSN-FTRILT----HEDDIAWPNALTLDYFTERL  190 (573)
Q Consensus       122 ~~~l~--~~~~-~P~~Iavdp~~g~LY-wtd~~~~~~I~r~~l--dG~~-~~~l~~----~~~~l~~P~glaiD~~~~~L  190 (573)
                      ..+.+  ..+. ....|.|.|..-+|- +...+...+|+....  ++.. ...+..    ....+.....++.-.....+
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            44333  2333 678999999765544 443233455555432  3322 222221    01223344566666444444


Q ss_pred             EEEeCCCCeEEE-EeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcccC
Q psy952          191 YWADAHLDYIAS-VDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTT  260 (573)
Q Consensus       191 Yw~D~~~~~I~~-~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~  260 (573)
                      ..+......+.. +..+|...+.+.....-....+++-....+|.++  .+.|++  ...+...+.+....
T Consensus       181 V~~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~--~~~~~~--~~~~~~W~~v~~~~  247 (253)
T PF10647_consen  181 VLGRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTD--DGGVLQ--SRSGASWREVPGGV  247 (253)
T ss_pred             EEeCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEEC--CCcEEE--CCCCCcceEccCCC
Confidence            444444444555 8888887766633210112233333456688886  345654  45666666655443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0263|consensus

Probab=88.75  E-value=43  Score=37.11  Aligned_cols=190  Identities=12%  Similarity=0.120  Sum_probs=106.6

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCC---eEEEEEcCCCce
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSK---QLDVAELDGTNR  122 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~---~I~~~~ldg~~~  122 (573)
                      .+.+..|.+.+ ++.++-.....++-..++.-.-.++....+.-+..+.|-+  +-.||+-....   +++..+.. .-.
T Consensus       453 PVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~-~Pl  528 (707)
T KOG0263|consen  453 PVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHN-KPL  528 (707)
T ss_pred             ceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccC-Cch
Confidence            36688888744 4455555666777777765444444444443444556654  34677664433   34433331 222


Q ss_pred             eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEE-eccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952          123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI-GMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA  201 (573)
Q Consensus       123 ~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~-~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~  201 (573)
                      ++++..+.+..-++++|...||. |. +....+..- ...|..++++.   ..-.....|++.+.+..|- +-...+.|.
T Consensus       529 RifaghlsDV~cv~FHPNs~Y~a-TG-SsD~tVRlWDv~~G~~VRiF~---GH~~~V~al~~Sp~Gr~La-Sg~ed~~I~  602 (707)
T KOG0263|consen  529 RIFAGHLSDVDCVSFHPNSNYVA-TG-SSDRTVRLWDVSTGNSVRIFT---GHKGPVTALAFSPCGRYLA-SGDEDGLIK  602 (707)
T ss_pred             hhhcccccccceEEECCcccccc-cC-CCCceEEEEEcCCCcEEEEec---CCCCceEEEEEcCCCceEe-ecccCCcEE
Confidence            44557888889999999655443 32 222222221 23355554443   3222335788886443332 333456777


Q ss_pred             EEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEecCCCCceEEEe
Q psy952          202 SVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       202 ~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd~~~~~I~~~~  246 (573)
                      .-++.++.+.....+. ....++|.+ .++.++++....+.|..-+
T Consensus       603 iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD  647 (707)
T KOG0263|consen  603 IWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWD  647 (707)
T ss_pred             EEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence            7777765554333333 456778887 5778888888877776443

>KOG2048|consensus

Probab=88.66  E-value=41  Score=36.75  Aligned_cols=160  Identities=14%  Similarity=0.148  Sum_probs=101.9

Q ss_pred             cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC---CCCcceeEEeecCCcEEEEeCCCCeEEEEE
Q psy952           40 VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD---SHGLEGLAVDWVGRKLYWLDRHSKQLDVAE  116 (573)
Q Consensus        40 ~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~---~~~p~glavD~~~~~LY~td~~~~~I~~~~  116 (573)
                      ..+...++.--+..+..+.|-+.-...-+|||+..++......+...   +.....|.+-..+++|++.......++.+.
T Consensus       378 ~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~e  457 (691)
T KOG2048|consen  378 FTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFE  457 (691)
T ss_pred             ecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEE
Confidence            34566677788888989999988888889999999873222222111   122333344334566666655556788888


Q ss_pred             cCCCceeEecc-----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEe-ccCCe
Q psy952          117 LDGTNRKTLKT-----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLD-YFTER  189 (573)
Q Consensus       117 ldg~~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD-~~~~~  189 (573)
                      +++...+.+..     ......-|++.|...||-.++  ..+.|...++.+.....++   ..+..+ .+.++. ...++
T Consensus       458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~--t~g~I~v~nl~~~~~~~l~---~rln~~vTa~~~~~~~~~~  532 (691)
T KOG2048|consen  458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS--TRGQIFVYNLETLESHLLK---VRLNIDVTAAAFSPFVRNR  532 (691)
T ss_pred             ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe--ccceEEEEEcccceeecch---hccCcceeeeeccccccCc
Confidence            88777666552     223367899999888888777  4678999999887766655   222221 344444 33466


Q ss_pred             EEEEeCCCCeEEEEeC
Q psy952          190 LYWADAHLDYIASVDL  205 (573)
Q Consensus       190 LYw~D~~~~~I~~~~~  205 (573)
                      |-++++. +.|+.+++
T Consensus       533 lvvats~-nQv~efdi  547 (691)
T KOG2048|consen  533 LVVATSN-NQVFEFDI  547 (691)
T ss_pred             EEEEecC-CeEEEEec
Confidence            7766653 45566665

>PF14339 DUF4394: Domain of unknown function (DUF4394)

Probab=88.58  E-value=24  Score=33.86  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=41.9

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC----C-CCcceeEEeecCCcEEEE
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD----S-HGLEGLAVDWVGRKLYWL  105 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~----~-~~p~glavD~~~~~LY~t  105 (573)
                      .....||+|-+.+++||-.. ..++||.++........+-...    + ..+.++.|.+..++|.+.
T Consensus        26 ge~l~GID~Rpa~G~LYgl~-~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv   91 (236)
T PF14339_consen   26 GESLVGIDFRPANGQLYGLG-STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV   91 (236)
T ss_pred             CCeEEEEEeecCCCCEEEEe-CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE
Confidence            35689999999999999984 4578999998766554441111    1 345666776766655554

>KOG3914|consensus

Probab=88.51  E-value=9.5  Score=38.80  Aligned_cols=160  Identities=12%  Similarity=0.039  Sum_probs=101.3

Q ss_pred             CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEec---cCCCCcceEEEeCCCceEEEEecCC-cCeEEEEecc-C
Q psy952           89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLK---TAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMD-G  162 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~---~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ld-G  162 (573)
                      .+..+.+...++.||+++... ++.++.+.++.. ..++   ..-..|.+|.+......+-+++... ...+.....+ |
T Consensus        64 a~~~~~~s~~~~llAv~~~~K-~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSK-QRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCC-ceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            344444555567788888654 455566655543 2222   2445688998888777788887432 2233333333 4


Q ss_pred             CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE-EEEEeCCccceeEEEeeeCCeEEEecCCCCc
Q psy952          163 SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK-HIVISGQKVPHVFALTLFEDHIYWTDWNTKS  241 (573)
Q Consensus       163 ~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~  241 (573)
                      ..+.++    ..+..-..+++.++...|.-+| ...+|+...+.+... +.+..+. -.....|++..+++.|+-.+.+.
T Consensus       143 ~~~~~l----GhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~~~~LlS~sGD~t  216 (390)
T KOG3914|consen  143 RCEPIL----GHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTDNYLLLSGSGDKT  216 (390)
T ss_pred             Ccchhh----hhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccchhhhcccc-HhheeeeeeccCceeeecCCCCc
Confidence            443332    3444457888988888888777 456788888877654 2222222 23467899999999999999999


Q ss_pred             eEEEeccCCcceEE
Q psy952          242 INRADKFNGRDYRV  255 (573)
Q Consensus       242 I~~~~~~~g~~~~~  255 (573)
                      |+.=+..+|+...+
T Consensus       217 lr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  217 LRLWDITSGKLLDT  230 (390)
T ss_pred             EEEEecccCCcccc
Confidence            98878778876544

>KOG0646|consensus

Probab=88.40  E-value=35  Score=35.59  Aligned_cols=151  Identities=8%  Similarity=0.080  Sum_probs=85.8

Q ss_pred             ceeeCCCCCCEEEEEe--cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC------C-
Q psy952            8 TCKRRDSIKPWLIFSN--KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS------T-   77 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~--~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g------~-   77 (573)
                      +|.+.. +.++++++.  ...|+-..+..+.+ ..+......+.-|.|. .++..+++....+.|..+.+-.      . 
T Consensus        85 ~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~  162 (476)
T KOG0646|consen   85 HALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDH  162 (476)
T ss_pred             eeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCC
Confidence            455543 556666655  57888888875543 3333445567778786 5778888888888777665421      1 


Q ss_pred             cceE--EEcCCCCCcceeEEeec--CCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcC
Q psy952           78 EKER--VIRHDSHGLEGLAVDWV--GRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQA  153 (573)
Q Consensus        78 ~~~~--i~~~~~~~p~glavD~~--~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~  153 (573)
                      .+..  ++...--.+..|.++.-  +.+||-+ +..+.|.+.++.+...-.-+.-...+.++||||....+|+-.  ..+
T Consensus       163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt--~~G  239 (476)
T KOG0646|consen  163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT--EEG  239 (476)
T ss_pred             CccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC--Ccc
Confidence            1111  11111124445555432  2344433 344566666665443211112334589999999998898865  356


Q ss_pred             eEEEEeccCC
Q psy952          154 YIGKIGMDGS  163 (573)
Q Consensus       154 ~I~r~~ldG~  163 (573)
                      .|+...+.+.
T Consensus       240 ~I~~~~~~~~  249 (476)
T KOG0646|consen  240 KIFQNLLFKL  249 (476)
T ss_pred             eEEeeehhcC
Confidence            7776666543

>KOG2139|consensus

Probab=88.10  E-value=32  Score=34.83  Aligned_cols=197  Identities=14%  Similarity=0.098  Sum_probs=111.5

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC---CCce
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD---GTNR  122 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld---g~~~  122 (573)
                      .+..|.+......|-=+......|...+.+.+....+...+++...-|-..+.+..||-+--. +...+-+..   ...+
T Consensus       197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d-avfrlw~e~q~wt~er  275 (445)
T KOG2139|consen  197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD-AVFRLWQENQSWTKER  275 (445)
T ss_pred             eeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc-ceeeeehhcccceecc
Confidence            367899987655555556677789989988776666665566666666677766666665422 212221111   2222


Q ss_pred             eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE----------EEEec------CCC----CCCCceEE
Q psy952          123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT----------RILTH------EDD----IAWPNALT  182 (573)
Q Consensus       123 ~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~----------~l~~~------~~~----l~~P~gla  182 (573)
                      -.+.++  ...+-.-+|...+|.++-.+ .+.|++...++....          .++..      ..+    -..+.-||
T Consensus       276 w~lgsg--rvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~la  352 (445)
T KOG2139|consen  276 WILGSG--RVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLA  352 (445)
T ss_pred             eeccCC--ceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceee
Confidence            222233  44555567888888888755 678888887765321          11110      011    23456799


Q ss_pred             EeccCCeEEEEeCCCC-------eEEEEeCCCCcEEEEE-eCC-ccceeEEEee----eCCeEEEecCCCCceEEEe
Q psy952          183 LDYFTERLYWADAHLD-------YIASVDLDGKHKHIVI-SGQ-KVPHVFALTL----FEDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       183 iD~~~~~LYw~D~~~~-------~I~~~~~dG~~~~~l~-~~~-~~~~p~~ia~----~~~~lywtd~~~~~I~~~~  246 (573)
                      .|+.+.+|-++=-+..       .|.+++..-+....+. -+. .-++|.-|.+    .++.|.-.-|.+++|.+..
T Consensus       353 wDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~yp  429 (445)
T KOG2139|consen  353 WDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYP  429 (445)
T ss_pred             ECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeee
Confidence            9999999888755444       2334333333222222 111 1245666654    2455666677777776654

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=87.94  E-value=4.5  Score=43.29  Aligned_cols=107  Identities=14%  Similarity=0.055  Sum_probs=65.1

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCC----------------CeEEEEEcCCC-------cceEEEcCC-------------
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAA----------------KTIYRSRVGST-------EKERVIRHD-------------   86 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~----------------~~I~~~~~~g~-------~~~~i~~~~-------------   86 (573)
                      .+..|..|++.+..+.||++..++                +.|+|+...+.       ..+.++..+             
T Consensus       415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~  494 (616)
T COG3211         415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI  494 (616)
T ss_pred             cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence            456799999999999999986543                47888877553       223232211             


Q ss_pred             ----CCCcceeEEeecCCcEEEEeCCC----CeE---EEEE-cCCCc--eeEecc--CCCCcceEEEeCCCceEEEEec
Q psy952           87 ----SHGLEGLAVDWVGRKLYWLDRHS----KQL---DVAE-LDGTN--RKTLKT--AIQDPRGITLHPGIGYVYFSSW  149 (573)
Q Consensus        87 ----~~~p~glavD~~~~~LY~td~~~----~~I---~~~~-ldg~~--~~~l~~--~~~~P~~Iavdp~~g~LYwtd~  149 (573)
                          +..|.+|+||+.++...-||...    +++   .-+. .++..  .+.++.  ......|+++.|..+.||+.-.
T Consensus       495 ~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQ  573 (616)
T COG3211         495 NANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQ  573 (616)
T ss_pred             ccccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEec
Confidence                34599999998665545566432    111   1111 22211  112222  2235679999999899998763

>KOG1036|consensus

Probab=87.84  E-value=30  Score=34.19  Aligned_cols=100  Identities=12%  Similarity=0.136  Sum_probs=65.2

Q ss_pred             CCEEEEEe-cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           16 KPWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        16 ~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      ...||++. ...++.++.+.....+.+.....+...+|.. ...+|..+ ..+.|.+++++++...++.+.. .....|.
T Consensus        25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~-~dg~vr~~Dln~~~~~~igth~-~~i~ci~  101 (323)
T KOG1036|consen   25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGG-LDGQVRRYDLNTGNEDQIGTHD-EGIRCIE  101 (323)
T ss_pred             CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEec-cCceEEEEEecCCcceeeccCC-CceEEEE
Confidence            34566665 5677777776665544444444566777763 55666655 4568999999987776555443 5666676


Q ss_pred             EeecCCcEEEEeCCCCeEEEEEcCC
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAELDG  119 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~ldg  119 (573)
                      .-+ .....++-+..++|.+.+...
T Consensus       102 ~~~-~~~~vIsgsWD~~ik~wD~R~  125 (323)
T KOG1036|consen  102 YSY-EVGCVISGSWDKTIKFWDPRN  125 (323)
T ss_pred             eec-cCCeEEEcccCccEEEEeccc
Confidence            654 345667777788888877665

>KOG0296|consensus

Probab=87.63  E-value=34  Score=34.61  Aligned_cols=115  Identities=10%  Similarity=0.032  Sum_probs=66.1

Q ss_pred             CCCceeeCCCCCCEEEEEe-cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE
Q psy952            5 DESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV   82 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i   82 (573)
                      |-.+|...+....||.-++ ...|+......... ..+......+.=|-|++ ...|+.+-...+.|+.+.+.......+
T Consensus       107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv  185 (399)
T KOG0296|consen  107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKV  185 (399)
T ss_pred             CceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeE
Confidence            5566666543333443332 34555555543322 23334555577788897 778888888899999999987555445


Q ss_pred             EcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952           83 IRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        83 ~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~  121 (573)
                      +.........=.|-+.+++|.-. ...+.|.+-++....
T Consensus       186 ~~Gh~~~ct~G~f~pdGKr~~tg-y~dgti~~Wn~ktg~  223 (399)
T KOG0296|consen  186 MSGHNSPCTCGEFIPDGKRILTG-YDDGTIIVWNPKTGQ  223 (399)
T ss_pred             ecCCCCCcccccccCCCceEEEE-ecCceEEEEecCCCc
Confidence            44332222222233345555444 457788888876544

>KOG0308|consensus

Probab=87.35  E-value=49  Score=36.12  Aligned_cols=186  Identities=12%  Similarity=0.049  Sum_probs=109.6

Q ss_pred             CEEEEEecccEEEEEcCCCc---eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc---------
Q psy952           17 PWLIFSNKYYVRNMSLDATQ---YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR---------   84 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l~g~~---~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~---------   84 (573)
                      .+|-.+....|+.+......   ...+...-..+..|+|-..++.|+.+-.-.++|+..+++....+.+..         
T Consensus        87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl  166 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL  166 (735)
T ss_pred             ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence            55555666677777664332   223334445577888877888899888888899999987542211111         


Q ss_pred             --CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952           85 --HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus        85 --~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                        .......+||... ++.++++-...+-|.+.+..... +..|...-.+.+.|.++.....+.-+.  ..+.|..-++.
T Consensus       167 ~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s--SDgtIrlWdLg  243 (735)
T KOG0308|consen  167 GSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS--SDGTIRLWDLG  243 (735)
T ss_pred             CCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC--CCceEEeeecc
Confidence              1123445566553 34566666555666666654333 233445667789999988655554333  35666666664


Q ss_pred             CCCcE-EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc
Q psy952          162 GSNFT-RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH  209 (573)
Q Consensus       162 G~~~~-~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~  209 (573)
                      -..-. +++. ....  ..+|..++.-..+|..+ ..+.|++.++....
T Consensus       244 qQrCl~T~~v-H~e~--VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~  288 (735)
T KOG0308|consen  244 QQRCLATYIV-HKEG--VWALQSSPSFTHVYSGG-RDGNIYRTDLRNPA  288 (735)
T ss_pred             ccceeeeEEe-ccCc--eEEEeeCCCcceEEecC-CCCcEEecccCCch
Confidence            33211 1211 2222  34666666667788776 45678888887643

>KOG0318|consensus

Probab=87.31  E-value=44  Score=35.53  Aligned_cols=217  Identities=12%  Similarity=0.100  Sum_probs=102.0

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC---CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC-C
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD---SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG-T  120 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~---~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg-~  120 (573)
                      +.+..|-|.+. +.+|.+-...++|+.++=..+...-.+...   -+.+.+|+--+.+.++ .|-+...++.+-+... +
T Consensus       191 kFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~-~T~SaDkt~KIWdVs~~s  268 (603)
T KOG0318|consen  191 KFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF-LTVSADKTIKIWDVSTNS  268 (603)
T ss_pred             cceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE-EEecCCceEEEEEeeccc
Confidence            34778899975 888888888889988774433332223211   2345445444333333 3333333333333222 2


Q ss_pred             ceeEec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952          121 NRKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD  198 (573)
Q Consensus       121 ~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~  198 (573)
                      ..+++.  +.+.+ .-+-+-+.++.|.-..  ..+.|--.+++-.....++  .........|++.+.+..||-++ ..+
T Consensus       269 lv~t~~~~~~v~d-qqvG~lWqkd~lItVS--l~G~in~ln~~d~~~~~~i--~GHnK~ITaLtv~~d~~~i~Sgs-yDG  342 (603)
T KOG0318|consen  269 LVSTWPMGSTVED-QQVGCLWQKDHLITVS--LSGTINYLNPSDPSVLKVI--SGHNKSITALTVSPDGKTIYSGS-YDG  342 (603)
T ss_pred             eEEEeecCCchhc-eEEEEEEeCCeEEEEE--cCcEEEEecccCCChhhee--cccccceeEEEEcCCCCEEEeec-cCc
Confidence            222222  11100 0000111122222111  1222333332221222222  23344557899988777777655 456


Q ss_pred             eEEEEeCC-CCcEEEEEeCCccceeEEEeeeC-CeEEEecCCCCceEEEeccCCc-ceEEEcccCCCceeeeeeec
Q psy952          199 YIASVDLD-GKHKHIVISGQKVPHVFALTLFE-DHIYWTDWNTKSINRADKFNGR-DYRVLRNTTHRPYDIHVYHP  271 (573)
Q Consensus       199 ~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~~~~~~~g~-~~~~l~~~~~~p~~i~v~~~  271 (573)
                      .|..-+.. |..-++..... .....+|+..+ +.||-.-| ...|.++....+. ........-.+|.++++..+
T Consensus       343 ~I~~W~~~~g~~~~~~g~~h-~nqI~~~~~~~~~~~~t~g~-Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d  416 (603)
T KOG0318|consen  343 HINSWDSGSGTSDRLAGKGH-TNQIKGMAASESGELFTIGW-DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD  416 (603)
T ss_pred             eEEEEecCCccccccccccc-cceEEEEeecCCCcEEEEec-CCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence            66655543 33333322322 45678899877 56655544 4567776532221 11112233446777776654

>KOG0276|consensus

Probab=87.22  E-value=49  Score=35.99  Aligned_cols=143  Identities=10%  Similarity=0.054  Sum_probs=84.3

Q ss_pred             CCCCceeeCCCCCCEEEEEe-cccEEEEEcCCCceeecccCC-cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE
Q psy952            4 WDESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQDL-LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER   81 (573)
Q Consensus         4 ~dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~-~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~   81 (573)
                      .|...|......+|+++.+. ...+...+.+.......+..- ..+++-.|-. +..-+++......|+.++.+...+-.
T Consensus        13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~   91 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVK   91 (794)
T ss_pred             CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccceeeE
Confidence            45666776666788888775 334444444433221111111 1123334443 34445566677889999998765544


Q ss_pred             EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE-ec-cCCCCcceEEEeCCCceEEEEe
Q psy952           82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT-LK-TAIQDPRGITLHPGIGYVYFSS  148 (573)
Q Consensus        82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~-l~-~~~~~P~~Iavdp~~g~LYwtd  148 (573)
                      .+...-..++.||+.+.. -.+.|.+....|..-+.++...-. .. ..-.....||+.|....-|.+-
T Consensus        92 ~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~  159 (794)
T KOG0276|consen   92 TFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA  159 (794)
T ss_pred             EeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence            444444688999999743 344455556677777877765433 22 3344478999999777777664

>KOG0272|consensus

Probab=87.05  E-value=40  Score=34.78  Aligned_cols=217  Identities=11%  Similarity=-0.012  Sum_probs=116.5

Q ss_pred             CCcceEEEEEEcCC-CEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCC
Q psy952           43 DLLNVVAMDFHYKE-NRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGT  120 (573)
Q Consensus        43 ~~~~~~~v~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~  120 (573)
                      ....+.+++|+|.. +.-..+-...+.+..+.+++...-.-+...+.++..++|.+.++.|--+-.. +-+|+  ++...
T Consensus       216 H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW--D~~tk  293 (459)
T KOG0272|consen  216 HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW--DLETK  293 (459)
T ss_pred             cccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhc--ccccc
Confidence            34568899999984 5445555566777777776643211123334788899999877666444321 11222  22221


Q ss_pred             ceeEec--cCCCCcceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952          121 NRKTLK--TAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL  197 (573)
Q Consensus       121 ~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~  197 (573)
                      . +.|.  ..-....+||+.+ .|-|-.|-.-+ -++|+=.. .|..... +  ...+....+++++ .+|+..-+-+..
T Consensus       294 ~-ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlR-tgr~im~-L--~gH~k~I~~V~fs-PNGy~lATgs~D  366 (459)
T KOG0272|consen  294 S-ELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLR-TGRCIMF-L--AGHIKEILSVAFS-PNGYHLATGSSD  366 (459)
T ss_pred             h-hhHhhcccccccceeEecC-CCceeeccCccchhheeecc-cCcEEEE-e--cccccceeeEeEC-CCceEEeecCCC
Confidence            1 2222  2344578999998 56776664211 22333211 1222222 2  2445555677777 466766676666


Q ss_pred             CeEEEEeCCCCcE-EEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeee
Q psy952          198 DYIASVDLDGKHK-HIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYH  270 (573)
Q Consensus       198 ~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~  270 (573)
                      +.+..-++.+... .++...  ..-...|.+  ..++..+|-...+.+..-...++...++|+......+.+.|..
T Consensus       367 nt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~  440 (459)
T KOG0272|consen  367 NTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP  440 (459)
T ss_pred             CcEEEeeecccccceecccc--cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc
Confidence            6555545544332 122111  111223333  3567777777777766555566666677766666666655543

>KOG2110|consensus

Probab=86.76  E-value=38  Score=34.36  Aligned_cols=134  Identities=7%  Similarity=0.046  Sum_probs=76.5

Q ss_pred             ccEEEEEcCCCce-eecc---cCCcceEEEEEEcCCCEEEEE-ECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecC
Q psy952           25 YYVRNMSLDATQY-SLVH---QDLLNVVAMDFHYKENRFYFA-DVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVG   99 (573)
Q Consensus        25 ~~I~~i~l~g~~~-~~~~---~~~~~~~~v~~d~~~~~ly~~-d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~   99 (573)
                      ..|+.+++..-.+ ..+.   ++.....++.+...+..|-+- ....+.|+.+++..-.....+...-.....|||+. .
T Consensus       106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~  184 (391)
T KOG2110|consen  106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-D  184 (391)
T ss_pred             ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-C
Confidence            4466666654322 1111   122224445555444344333 34568888888776444333433346788899996 5


Q ss_pred             CcEEEEeCCCCeEEE-EEc-CCCceeEeccC--CCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952          100 RKLYWLDRHSKQLDV-AEL-DGTNRKTLKTA--IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus       100 ~~LY~td~~~~~I~~-~~l-dg~~~~~l~~~--~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      |.|.-|-+..|+|.| +.. +|.....+..+  ..+...|+++|...+|-.+.  ....|....++
T Consensus       185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS--~TeTVHiFKL~  248 (391)
T KOG2110|consen  185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS--NTETVHIFKLE  248 (391)
T ss_pred             CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec--CCCeEEEEEec
Confidence            667777777776654 443 45554445433  34578999999877665554  45566666654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.53  E-value=15  Score=38.48  Aligned_cols=63  Identities=14%  Similarity=0.254  Sum_probs=33.6

Q ss_pred             cceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec---C--------------CCCCCCceEEEeccCCeEEEEe
Q psy952          132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH---E--------------DDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       132 P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~---~--------------~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      +..|.|....++||++.|. .+.|...++.-.....++..   -              .-...|.-|.+..+++||||+.
T Consensus       314 itDI~iSlDDrfLYvs~W~-~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWL-HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ---EEE-TTS-EEEEEETT-TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             eEeEEEccCCCEEEEEccc-CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            6889999999999999997 56677776655443333310   0              0112477788888899999997


Q ss_pred             C
Q psy952          195 A  195 (573)
Q Consensus       195 ~  195 (573)
                      +
T Consensus       393 S  393 (461)
T PF05694_consen  393 S  393 (461)
T ss_dssp             -
T ss_pred             e
Confidence            5

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2106|consensus

Probab=86.21  E-value=49  Score=35.01  Aligned_cols=161  Identities=16%  Similarity=0.163  Sum_probs=92.0

Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCc-
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNF-  165 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~-  165 (573)
                      +.|+-++=.  ..-||+--+ ++.|..-++.+....+.......-.|+|++|. ..+|.|-.. ..-+|++   +-... 
T Consensus       330 G~iRtv~e~--~~di~vGTt-rN~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~---~~k~~w  402 (626)
T KOG2106|consen  330 GPIRTVAEG--KGDILVGTT-RNFILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN---DHKLEW  402 (626)
T ss_pred             CCeeEEecC--CCcEEEeec-cceEEEeeecCCceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc---CCceeE
Confidence            344444432  233776654 45677777776665555544457899999994 566777521 1223333   11110 


Q ss_pred             EEEEec--CCCCCCCc-eEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeE--EEecCCCC
Q psy952          166 TRILTH--EDDIAWPN-ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHI--YWTDWNTK  240 (573)
Q Consensus       166 ~~l~~~--~~~l~~P~-glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~l--ywtd~~~~  240 (573)
                      ..++..  ...-..|. -||+-...++.++.|..+.....+..++....++.-.. ...-.+|.-.++.|  |-.+....
T Consensus       403 t~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  403 TKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             EEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCc
Confidence            011100  00112344 46666778899999988877777777755555544333 34455666667754  55677777


Q ss_pred             ceEEEeccCCcceEEE
Q psy952          241 SINRADKFNGRDYRVL  256 (573)
Q Consensus       241 ~I~~~~~~~g~~~~~l  256 (573)
                      +..++.|..|+..+.|
T Consensus       482 ~y~r~~k~~gs~ithL  497 (626)
T KOG2106|consen  482 KYSRVGKCSGSPITHL  497 (626)
T ss_pred             EEEEeeeecCceeEEe
Confidence            7888888888554443

>KOG0310|consensus

Probab=86.00  E-value=48  Score=34.75  Aligned_cols=209  Identities=8%  Similarity=0.016  Sum_probs=116.4

Q ss_pred             ccEEEEEcCCCc-eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952           25 YYVRNMSLDATQ-YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY  103 (573)
Q Consensus        25 ~~I~~i~l~g~~-~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY  103 (573)
                      ..|+.+++.... +..+......+.-+-|.+..+.++.+-.....+...++++.....-+...-..++..++-+.+++|.
T Consensus        90 G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hiv  169 (487)
T KOG0310|consen   90 GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIV  169 (487)
T ss_pred             CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEE
Confidence            456666643321 1122222233556778999999999887777777778877654323333446788899999999999


Q ss_pred             EEeCCCCeEEEEEcCCCceeEe-ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE-EEecCCCCCCCceE
Q psy952          104 WLDRHSKQLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR-ILTHEDDIAWPNAL  181 (573)
Q Consensus       104 ~td~~~~~I~~~~ldg~~~~~l-~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~-l~~~~~~l~~P~gl  181 (573)
                      +|-+..|.|...++.....+++ +....-...+..-| .|.++.+-.|  +.|.+.++-+..+.+ ..  .........|
T Consensus       170 vtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG--n~vkVWDl~~G~qll~~~--~~H~KtVTcL  244 (487)
T KOG0310|consen  170 VTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG--NSVKVWDLTTGGQLLTSM--FNHNKTVTCL  244 (487)
T ss_pred             EecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC--CeEEEEEecCCceehhhh--hcccceEEEE
Confidence            9999999998887765432221 22222223333334 5667776643  456666666333222 11  1223334567


Q ss_pred             EEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCcccee-EEEeee-CCeEEEecCCCCce
Q psy952          182 TLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHV-FALTLF-EDHIYWTDWNTKSI  242 (573)
Q Consensus       182 aiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p-~~ia~~-~~~lywtd~~~~~I  242 (573)
                      .+...+.+|+-+- -.+++-.+++  ++-+++..-. .+.| .+|++. ++...+.-..++.+
T Consensus       245 ~l~s~~~rLlS~s-LD~~VKVfd~--t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv  303 (487)
T KOG0310|consen  245 RLASDSTRLLSGS-LDRHVKVFDT--TNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLV  303 (487)
T ss_pred             EeecCCceEeecc-cccceEEEEc--cceEEEEeee-cccceeeEEecCCCceEEEeccccee
Confidence            7765566666442 2344555542  3444444422 4444 466763 34444444444443

>KOG2055|consensus

Probab=85.66  E-value=49  Score=34.54  Aligned_cols=159  Identities=11%  Similarity=0.077  Sum_probs=77.2

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-CC-cceeEEeecCCcEEEEeCCCCeEEEEEcCCC
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-HG-LEGLAVDWVGRKLYWLDRHSKQLDVAELDGT  120 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-~~-p~glavD~~~~~LY~td~~~~~I~~~~ldg~  120 (573)
                      ..+.+..|-|++....|.+++.. +.+..+.++|.....|.+-.+ .. +.-..|-+.+....++-..+.-++..+|...
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d-~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCC-CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            34568899999877777766654 456666677753332221111 11 2233344444423344334445566666544


Q ss_pred             ceeEecc--CCC--CcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCCCCceEEEeccCCeEEEEeC
Q psy952          121 NRKTLKT--AIQ--DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIAWPNALTLDYFTERLYWADA  195 (573)
Q Consensus       121 ~~~~l~~--~~~--~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~  195 (573)
                      ....+..  +..  .-+-.+|.+...+|-+  .|..+.|....+-... ...+- ...   ...+++++.++ +..|+-.
T Consensus       291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~--~G~~G~I~lLhakT~eli~s~K-ieG---~v~~~~fsSds-k~l~~~~  363 (514)
T KOG2055|consen  291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAI--AGNNGHIHLLHAKTKELITSFK-IEG---VVSDFTFSSDS-KELLASG  363 (514)
T ss_pred             ccccccCCCCcccchhheeEecCCCCeEEE--cccCceEEeehhhhhhhhheee-ecc---EEeeEEEecCC-cEEEEEc
Confidence            3333221  111  2344555554443322  2345555554432211 11110 011   12567777444 5555566


Q ss_pred             CCCeEEEEeCCCCc
Q psy952          196 HLDYIASVDLDGKH  209 (573)
Q Consensus       196 ~~~~I~~~~~dG~~  209 (573)
                      +++.|+..++.-..
T Consensus       364 ~~GeV~v~nl~~~~  377 (514)
T KOG2055|consen  364 GTGEVYVWNLRQNS  377 (514)
T ss_pred             CCceEEEEecCCcc
Confidence            67788888886543

>KOG0772|consensus

Probab=84.93  E-value=57  Score=34.64  Aligned_cols=193  Identities=12%  Similarity=0.103  Sum_probs=106.9

Q ss_pred             CCEEEEEecccEEEEEcCCCceeeccc------C-------CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC--cce
Q psy952           16 KPWLIFSNKYYVRNMSLDATQYSLVHQ------D-------LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST--EKE   80 (573)
Q Consensus        16 ~~~l~~s~~~~I~~i~l~g~~~~~~~~------~-------~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~--~~~   80 (573)
                      ..+|+++....++.++-+|....-...      .       ...+....|++.+...|++-...+.++.++++..  ..+
T Consensus       227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q  306 (641)
T KOG0772|consen  227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ  306 (641)
T ss_pred             CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence            346666666667778888865422111      1       1224456799999999999988888877777653  233


Q ss_pred             EEEcCC--C--CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec----c--CCCCcceEEEeCCCceEEEEecC
Q psy952           81 RVIRHD--S--HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK----T--AIQDPRGITLHPGIGYVYFSSWN  150 (573)
Q Consensus        81 ~i~~~~--~--~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~----~--~~~~P~~Iavdp~~g~LYwtd~~  150 (573)
                      +|....  .  -.|..-+++. .++++-+--..|.|+.-++.+..++..+    .  .......|++.+...+|. +- +
T Consensus       307 Vik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll-SR-g  383 (641)
T KOG0772|consen  307 VIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL-SR-G  383 (641)
T ss_pred             EEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh-hc-c
Confidence            332211  1  2355566765 3455555556788888777554444322    1  233678899988654442 32 2


Q ss_pred             CcCeEEEEeccCCCcEEEEe--------c------------CCCCCCCceEEEeccCCeEEEEeCC-CCeEEEEeCCCCc
Q psy952          151 LQAYIGKIGMDGSNFTRILT--------H------------EDDIAWPNALTLDYFTERLYWADAH-LDYIASVDLDGKH  209 (573)
Q Consensus       151 ~~~~I~r~~ldG~~~~~l~~--------~------------~~~l~~P~glaiD~~~~~LYw~D~~-~~~I~~~~~dG~~  209 (573)
                      ....+..-+|.-.+..+.+.        .            .++-..|++.+    .+.|||-|.. ...++.+++++..
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~----~g~L~f~d~~t~d~v~ki~i~~aS  459 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT----AGTLFFFDRMTLDTVYKIDISTAS  459 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC----CceEEEEeccceeeEEEecCCCce
Confidence            22333333333222222110        0            12333455443    4577777764 4578888888665


Q ss_pred             EEEEEe
Q psy952          210 KHIVIS  215 (573)
Q Consensus       210 ~~~l~~  215 (573)
                      +..+.-
T Consensus       460 vv~~~W  465 (641)
T KOG0772|consen  460 VVRCLW  465 (641)
T ss_pred             EEEEee
Confidence            544443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=84.80  E-value=34  Score=31.86  Aligned_cols=118  Identities=8%  Similarity=0.031  Sum_probs=71.1

Q ss_pred             ccEEEEEcCCCceeec-ccCCcceEEEEEEcCCCEEEEEEC-CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           25 YYVRNMSLDATQYSLV-HQDLLNVVAMDFHYKENRFYFADV-AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~-~~~~~~~~~v~~d~~~~~ly~~d~-~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ..|++++..+.....+ +...+.+..++|.|.++++.++.. ....|..+++++.....+   +-.....|.+.+.++.|
T Consensus        39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~---~~~~~n~i~wsP~G~~l  115 (194)
T PF08662_consen   39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF---GTQPRNTISWSPDGRFL  115 (194)
T ss_pred             EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee---cCCCceEEEECCCCCEE
Confidence            3566676655443333 223334889999999988877643 334677777764333222   22456678888888888


Q ss_pred             EEEeCC--CCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEE
Q psy952          103 YWLDRH--SKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFS  147 (573)
Q Consensus       103 Y~td~~--~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwt  147 (573)
                      ..+..+  .+.|.+.+.....  .+. ..-.....++-+|..++|..+
T Consensus       116 ~~~g~~n~~G~l~~wd~~~~~--~i~~~~~~~~t~~~WsPdGr~~~ta  161 (194)
T PF08662_consen  116 VLAGFGNLNGDLEFWDVRKKK--KISTFEHSDATDVEWSPDGRYLATA  161 (194)
T ss_pred             EEEEccCCCcEEEEEECCCCE--EeeccccCcEEEEEEcCCCCEEEEE
Confidence            877643  4678888877322  222 122235677778855555443

>KOG0319|consensus

Probab=84.51  E-value=71  Score=35.40  Aligned_cols=184  Identities=11%  Similarity=0.012  Sum_probs=101.8

Q ss_pred             CEEEEEecccEEEEEcCCCceeec---ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-EEEcCCCCCcce
Q psy952           17 PWLIFSNKYYVRNMSLDATQYSLV---HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-RVIRHDSHGLEG   92 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l~g~~~~~~---~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~i~~~~~~~p~g   92 (573)
                      .+|+-+-.+.|..+++......++   ......+.++++.+.++.||.+- .++.|..+.+..+... ......-.-...
T Consensus        32 ~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswKa~He~Pvi~  110 (775)
T KOG0319|consen   32 QHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWKAIHEAPVIT  110 (775)
T ss_pred             CEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccceEEEEEcccchHhHhHhhccCCCeEE
Confidence            344444466788888865543222   12344578899998888887765 3446666777654221 111112234567


Q ss_pred             eEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCC-cceEEEeCCCceEEEEecCCcCeEEEEeccCCCc-EEEEe
Q psy952           93 LAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQD-PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF-TRILT  170 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~-P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~-~~l~~  170 (573)
                      |++|+.+ .|.-+-...+++.|-++.+.+...-+.+... ...|.++|.-.+...........+...++.-... ..+. 
T Consensus       111 ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~-  188 (775)
T KOG0319|consen  111 MAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM-  188 (775)
T ss_pred             EEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH-
Confidence            9999866 6666666778999999998887766655333 5667777643321111112345566555542211 1111 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL  205 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~  205 (573)
                       ........+|++-.+...|+ +-.....|..-++
T Consensus       189 -~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~  221 (775)
T KOG0319|consen  189 -ILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDL  221 (775)
T ss_pred             -HhhhhheeeeeeccCCceEE-EeccCcEEEEeeh
Confidence             22334456777775543333 3333444555555

>KOG2055|consensus

Probab=83.75  E-value=60  Score=33.95  Aligned_cols=77  Identities=13%  Similarity=0.181  Sum_probs=41.3

Q ss_pred             CCCCCCceeeCCCCCCEEEEEe-cccEEEEEcCCCceeeccc-C-Ccc-eEEEEEEcCCCEEEEEECCCCeEEEEEcCCC
Q psy952            2 PGWDESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQ-D-LLN-VVAMDFHYKENRFYFADVAAKTIYRSRVGST   77 (573)
Q Consensus         2 ~g~dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~-~-~~~-~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~   77 (573)
                      |-.-|-++..--...|.||++. .+.++.+.++|..-..+-. . .+. +.-..|.+.+....++.....-+|.++|...
T Consensus       211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            3345666766555677888876 3566666777754322210 0 111 3344566555534444445556666776543


Q ss_pred             c
Q psy952           78 E   78 (573)
Q Consensus        78 ~   78 (573)
                      .
T Consensus       291 k  291 (514)
T KOG2055|consen  291 K  291 (514)
T ss_pred             c
Confidence            3

>KOG1517|consensus

Probab=82.64  E-value=52  Score=38.20  Aligned_cols=182  Identities=13%  Similarity=0.095  Sum_probs=107.9

Q ss_pred             CCCCCCCceeeCC-CCCCEEEEEec-ccEEEEEcCCCce--eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC
Q psy952            1 MPGWDESTCKRRD-SIKPWLIFSNK-YYVRNMSLDATQY--SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS   76 (573)
Q Consensus         1 ~~g~dg~~C~~~~-~~~~~l~~s~~-~~I~~i~l~g~~~--~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g   76 (573)
                      +||.+|..|...= ...++|+.+.. ..|+..+++....  .++...-.-+.+|.-|..++.++.+....|+|..++..-
T Consensus      1161 ~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~ 1240 (1387)
T KOG1517|consen 1161 LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRM 1240 (1387)
T ss_pred             CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeeccc
Confidence            4677777766422 34567777663 5566666765433  233444455888888988899999999999998888654


Q ss_pred             CcceEEE---cCC--CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccC------CCCcceEEEeCCCceEE
Q psy952           77 TEKERVI---RHD--SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTA------IQDPRGITLHPGIGYVY  145 (573)
Q Consensus        77 ~~~~~i~---~~~--~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~------~~~P~~Iavdp~~g~LY  145 (573)
                      ..+...+   ...  ...+.++.+-..+-.=.++-+..|.|+..++.+......++.      ...-.+|.|++. .-|+
T Consensus      1241 a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h-apii 1319 (1387)
T KOG1517|consen 1241 APPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH-APII 1319 (1387)
T ss_pred             CCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC-CCee
Confidence            3322111   111  112455555432222245666788999999988644443321      113677889884 4455


Q ss_pred             EEecCCcCeEEEEeccCCCcEEEEec----CCCCCCCceEEEec
Q psy952          146 FSSWNLQAYIGKIGMDGSNFTRILTH----EDDIAWPNALTLDY  185 (573)
Q Consensus       146 wtd~~~~~~I~r~~ldG~~~~~l~~~----~~~l~~P~glaiD~  185 (573)
                      -+-.  ...|...++.|....++...    ...+..+..|++.+
T Consensus      1320 AsGs--~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1320 ASGS--AQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred             eecC--cceEEEEecChhhhcccccCcccccCcCCCcceeeecc
Confidence            4442  36788888888776655421    12233345566653

>KOG1274|consensus

Probab=82.32  E-value=97  Score=35.31  Aligned_cols=197  Identities=11%  Similarity=0.112  Sum_probs=107.6

Q ss_pred             eeeCCCCCCEEEEEec-ccEEEEEcCC--CceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952            9 CKRRDSIKPWLIFSNK-YYVRNMSLDA--TQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus         9 C~~~~~~~~~l~~s~~-~~I~~i~l~g--~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      |.+.++  .||+.... ..|+.+.-..  ..+..+-.....+.+++.+.   ..|.+-...+.|.++.........|+..
T Consensus        20 ~~d~~g--efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~~~iL~R   94 (933)
T KOG1274|consen   20 CYDPDG--EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEEDTILAR   94 (933)
T ss_pred             EEcCCC--CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCCCccceeee
Confidence            555544  38877765 4455554322  22222221333455666542   2677777888999999987766655543


Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      ---..+.++|+-.+.++-. -+..-.|-+.+++ ++..+++...-....+|.++|...+|-++..  .+.+...++.-..
T Consensus        95 ftlp~r~~~v~g~g~~iaa-gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--dG~v~iw~~~~~~  171 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAA-GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--DGKVQIWDLQDGI  171 (933)
T ss_pred             eeccceEEEEecCCcEEEe-ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--CceEEEEEcccch
Confidence            2235677888854444444 3344456666764 5555555555555678888987666666652  4555555554222


Q ss_pred             -cEEEEec---CC-CCCCC-ceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEE
Q psy952          165 -FTRILTH---ED-DIAWP-NALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI  214 (573)
Q Consensus       165 -~~~l~~~---~~-~l~~P-~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~  214 (573)
                       ...+...   .+ .+..+ .-++..|+++.+-+.- ..+.|..++.+|-.....+
T Consensus       172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~f~L  226 (933)
T KOG1274|consen  172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQFKL  226 (933)
T ss_pred             hhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeheee
Confidence             1111100   01 11222 3466777767665543 3456666666665444333

>KOG0282|consensus

Probab=82.29  E-value=29  Score=36.34  Aligned_cols=130  Identities=12%  Similarity=0.064  Sum_probs=76.8

Q ss_pred             CEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEe
Q psy952           17 PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVD   96 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD   96 (573)
                      .||-.+=...|+-.+++.++...-...-..|.-|-|.+.+.++|++....++|..+++..+....-....++.+..|.|=
T Consensus       272 ~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~  351 (503)
T KOG0282|consen  272 SFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV  351 (503)
T ss_pred             eeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence            34444445667777777655444444445578899999999999999999999999987654211122235566666664


Q ss_pred             ecCCcEEEEeCCCCeEEEEEcCCCceeEec--cCCCCcceEEEeCCCceEEEEe
Q psy952           97 WVGRKLYWLDRHSKQLDVAELDGTNRKTLK--TAIQDPRGITLHPGIGYVYFSS  148 (573)
Q Consensus        97 ~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~~~P~~Iavdp~~g~LYwtd  148 (573)
                      . .++=|++-+....+.+-...-.....++  .....-..|+++| ++..+.+.
T Consensus       352 ~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQ  403 (503)
T KOG0282|consen  352 D-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQ  403 (503)
T ss_pred             c-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhh
Confidence            3 4455555555555555444332222222  2333345688888 45554443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=81.66  E-value=66  Score=36.86  Aligned_cols=101  Identities=17%  Similarity=0.097  Sum_probs=49.6

Q ss_pred             ceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC-CCeEEEEeCCCCcEE
Q psy952          133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH-LDYIASVDLDGKHKH  211 (573)
Q Consensus       133 ~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~-~~~I~~~~~dG~~~~  211 (573)
                      ..+++|+..+.+||-..+..+.+     .|..+...    .++..-.=+|||...+++-|.-.. .+-++  |+|....-
T Consensus       378 ~~~s~D~~~glvy~ptGn~~pd~-----~g~~r~~~----~n~y~~slvALD~~TGk~~W~~Q~~~hD~W--D~D~~~~p  446 (764)
T TIGR03074       378 SVASYDEKLGLVYLPMGNQTPDQ-----WGGDRTPA----DEKYSSSLVALDATTGKERWVFQTVHHDLW--DMDVPAQP  446 (764)
T ss_pred             CceEEcCCCCeEEEeCCCccccc-----cCCccccC----cccccceEEEEeCCCCceEEEecccCCccc--cccccCCc
Confidence            46789999999999653222111     13332211    122233457889888888886443 22233  34433333


Q ss_pred             EEEeC---CccceeEEEee-eCCeEEEecCCCCceEE
Q psy952          212 IVISG---QKVPHVFALTL-FEDHIYWTDWNTKSINR  244 (573)
Q Consensus       212 ~l~~~---~~~~~p~~ia~-~~~~lywtd~~~~~I~~  244 (573)
                      +|+.-   .....|.-+.. -.+++|+-|..+++...
T Consensus       447 ~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       447 SLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             eEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            33321   00112221221 24567777777666543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0292|consensus

Probab=81.47  E-value=1e+02  Score=35.12  Aligned_cols=134  Identities=13%  Similarity=0.123  Sum_probs=81.7

Q ss_pred             ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952           41 HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG  119 (573)
Q Consensus        41 ~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg  119 (573)
                      .....++.++-|++ .+.|.++....+.|..++++.. ..+++-. ...+-.-||..+ .-+||-+-...| +.|+.++-
T Consensus       247 rgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrr-endRFW~laahP-~lNLfAAgHDsG-m~VFkleR  322 (1202)
T KOG0292|consen  247 RGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRR-ENDRFWILAAHP-ELNLFAAGHDSG-MIVFKLER  322 (1202)
T ss_pred             hcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeec-cCCeEEEEEecC-CcceeeeecCCc-eEEEEEcc
Confidence            34566788999997 6678889999999999999763 3333322 234566677765 457777765443 55555543


Q ss_pred             CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec---CCCCCCCceEEEeccCCeEEEEe
Q psy952          120 TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH---EDDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       120 ~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~---~~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      .           +-..+|+-  +.||+..   ...|...++....-..+...   .+.-..|..|.+.|..+-+.++.
T Consensus       323 E-----------rpa~~v~~--n~LfYvk---d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics  384 (1202)
T KOG0292|consen  323 E-----------RPAYAVNG--NGLFYVK---DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS  384 (1202)
T ss_pred             c-----------CceEEEcC--CEEEEEc---cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence            2           33455653  4455554   34677777765333333310   01123467899998888877773

>KOG0269|consensus

Probab=81.39  E-value=68  Score=35.79  Aligned_cols=161  Identities=9%  Similarity=0.036  Sum_probs=95.8

Q ss_pred             eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-----CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952           47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-----SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-----~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~  121 (573)
                      ..+|........|-++....-.|+.++.++......+..+     +.....+.-.-...+|..|-+.+|.|.+-+|.-..
T Consensus        42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~  121 (839)
T KOG0269|consen   42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI  121 (839)
T ss_pred             cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence            3455555556666666666556666665553322222111     11222222222334556666778899999998765


Q ss_pred             eeEec----cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952          122 RKTLK----TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL  197 (573)
Q Consensus       122 ~~~l~----~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~  197 (573)
                      +..++    +.-....-+.+++..-+|.++- ++.+.|.-.+|.-.......  ...-.....+.+.+..+..|.+-...
T Consensus       122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG-SQDg~vK~~DlR~~~S~~t~--~~nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  122 RNKLLTVFNEHERSANKLDFHSTEPNILISG-SQDGTVKCWDLRSKKSKSTF--RSNSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             cchhhhHhhhhccceeeeeeccCCccEEEec-CCCceEEEEeeecccccccc--cccchhhhceeeccCCCceEEEecCC
Confidence            55543    3444577888888888888776 34566666666544333322  23444456777777778888887777


Q ss_pred             CeEEEEeCCCCcE
Q psy952          198 DYIASVDLDGKHK  210 (573)
Q Consensus       198 ~~I~~~~~dG~~~  210 (573)
                      |.+...|+.-..+
T Consensus       199 G~lqlWDlRqp~r  211 (839)
T KOG0269|consen  199 GYLQLWDLRQPDR  211 (839)
T ss_pred             ceEEEeeccCchh
Confidence            8888877765544

>PHA02713 hypothetical protein; Provisional

Probab=81.09  E-value=94  Score=34.30  Aligned_cols=161  Identities=10%  Similarity=0.010  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCcceEEEcCCCCCc---ceeEEeecCCcEEEEeCC------CCeEEEEEcCCCceeEeccCCCCcc-eEEE
Q psy952           68 TIYRSRVGSTEKERVIRHDSHGL---EGLAVDWVGRKLYWLDRH------SKQLDVAELDGTNRKTLKTAIQDPR-GITL  137 (573)
Q Consensus        68 ~I~~~~~~g~~~~~i~~~~~~~p---~glavD~~~~~LY~td~~------~~~I~~~~ldg~~~~~l~~~~~~P~-~Iav  137 (573)
                      .+.++++.......+.  .+..+   .++++  .++.||+.-..      ...++++++....-..+ ..+..|+ +.++
T Consensus       273 ~v~~yd~~~~~W~~l~--~mp~~r~~~~~a~--l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~-~~m~~~R~~~~~  347 (557)
T PHA02713        273 CILVYNINTMEYSVIS--TIPNHIINYASAI--VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL-PPMIKNRCRFSL  347 (557)
T ss_pred             CEEEEeCCCCeEEECC--CCCccccceEEEE--ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeC-CCCcchhhceeE
Confidence            4566666544433332  22222   23333  57899998542      24577888765543322 2333333 1222


Q ss_pred             eCCCceEEEEecCC----cCeEEEEeccCCCcEEEEecCCCCCCCc-eEEEeccCCeEEEEeCC----------------
Q psy952          138 HPGIGYVYFSSWNL----QAYIGKIGMDGSNFTRILTHEDDIAWPN-ALTLDYFTERLYWADAH----------------  196 (573)
Q Consensus       138 dp~~g~LYwtd~~~----~~~I~r~~ldG~~~~~l~~~~~~l~~P~-glaiD~~~~~LYw~D~~----------------  196 (573)
                      -..+|.||+.-...    ...+++.++....=..    ...+..|. +.++-..+++||+.-..                
T Consensus       348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~----~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~  423 (557)
T PHA02713        348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM----LPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSID  423 (557)
T ss_pred             EEECCEEEEECCcCCCCCCceEEEEECCCCeEEE----CCCCCcccccccEEEECCEEEEEeCCCccccccccccccccc
Confidence            22368999986321    2356777665322111    12333332 12222247999997432                


Q ss_pred             -------CCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecC
Q psy952          197 -------LDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW  237 (573)
Q Consensus       197 -------~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~  237 (573)
                             .+.++++++....=+.+..-.......++++.++.||+.-.
T Consensus       424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG  471 (557)
T PHA02713        424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCD  471 (557)
T ss_pred             ccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeC
Confidence                   23566776654332322221101223478889999999843

>KOG1445|consensus

Probab=80.97  E-value=76  Score=34.66  Aligned_cols=136  Identities=10%  Similarity=0.072  Sum_probs=79.7

Q ss_pred             cccEEEEEcC--CCceeeccc---CCcceEEEEEEcCCC-EEEEE-ECCCCeEEEEEcCCC-----cceEEEcCCCCCcc
Q psy952           24 KYYVRNMSLD--ATQYSLVHQ---DLLNVVAMDFHYKEN-RFYFA-DVAAKTIYRSRVGST-----EKERVIRHDSHGLE   91 (573)
Q Consensus        24 ~~~I~~i~l~--g~~~~~~~~---~~~~~~~v~~d~~~~-~ly~~-d~~~~~I~~~~~~g~-----~~~~i~~~~~~~p~   91 (573)
                      ...|-.+.|.  |.-..-++.   +...+..+.||+-+. +|-++ |-+.-+|+|+..+|.     ..+.++.....++.
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~  681 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT  681 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence            4566666664  332222222   344577888887654 44443 222335677776663     34556666667888


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCC-CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDG-TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg-~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      .|-+.++.-.|..+-+..-+|..-+|.. ...-.|........+||-.|..+.|- |- ...++|.+....
T Consensus       682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A-tV-cKDg~~rVy~Pr  750 (1012)
T KOG1445|consen  682 SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA-TV-CKDGTLRVYEPR  750 (1012)
T ss_pred             EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee-ee-ecCceEEEeCCC
Confidence            8888887777666666666788777753 33334555556678888888544432 21 234555555443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.71  E-value=1.1e+02  Score=35.02  Aligned_cols=29  Identities=10%  Similarity=0.141  Sum_probs=21.8

Q ss_pred             EeeeCCeEEEecCCCCceEEEeccCCcce
Q psy952          225 LTLFEDHIYWTDWNTKSINRADKFNGRDY  253 (573)
Q Consensus       225 ia~~~~~lywtd~~~~~I~~~~~~~g~~~  253 (573)
                      |+..++.+|++-...+.++.+++.+|+.+
T Consensus       687 l~TagglvF~~gt~d~~l~A~D~~tGk~l  715 (764)
T TIGR03074       687 LATAGGLVFIGATQDNYLRAYDLSTGKEL  715 (764)
T ss_pred             EEEcCCEEEEEeCCCCEEEEEECCCCcee
Confidence            55667888885445678999999898764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=80.65  E-value=21  Score=37.32  Aligned_cols=61  Identities=11%  Similarity=0.102  Sum_probs=34.6

Q ss_pred             CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-----cCC---------------CCcceEEEeCCCceEEEEe
Q psy952           89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-----TAI---------------QDPRGITLHPGIGYVYFSS  148 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-----~~~---------------~~P~~Iavdp~~g~LYwtd  148 (573)
                      -|..|.|.-..+.||++....|.|..++........++     .+.               ..|.-|.++....+||||+
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            34666666668999999999999999998654433322     111               1378888999899999997


Q ss_pred             c
Q psy952          149 W  149 (573)
Q Consensus       149 ~  149 (573)
                      +
T Consensus       393 S  393 (461)
T PF05694_consen  393 S  393 (461)
T ss_dssp             -
T ss_pred             e
Confidence            4

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=80.04  E-value=17  Score=39.01  Aligned_cols=22  Identities=18%  Similarity=0.090  Sum_probs=19.5

Q ss_pred             CCCcceeEEeecCCcEEEEeCC
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRH  108 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~  108 (573)
                      +.+|++|++.+..+.+|++...
T Consensus       416 mdRpE~i~~~p~~g~Vy~~lTN  437 (616)
T COG3211         416 MDRPEWIAVNPGTGEVYFTLTN  437 (616)
T ss_pred             ccCccceeecCCcceEEEEeCC
Confidence            6799999999999999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	573
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		3e-57
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		1e-05
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		1e-56
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		2e-47
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		7e-15
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		5e-47
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		2e-15
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		5e-47
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		2e-08
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		8e-47
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		3e-08
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		2e-46
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		1e-09
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		3e-46
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		2e-09
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		7e-46
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		3e-11
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		2e-45
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		2e-43
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		7e-41
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		7e-41
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		8e-41
1npe_A	267	Crystal Structure Of Nidogen/laminin Complex Length		3e-25
1f5y_A	85	Nmr Structure Of A Concatemer Of The First And Seco		1e-06
1xfe_A	83	Solution Structure Of The La7-Egfa Pair From The Ld		5e-06
2kny_A	80	Fusion Construct Of Cr17 From Lrp-1 And Apoe Residu		1e-04
2gtl_M	217	Lumbricus Erythrocruorin At 3.5a Resolution Length		3e-04
2knx_A	50	Solution Structure Of Complement Repeat Cr17 From L		3e-04
2fcw_B	80	Structure Of A Complex Between The Pair Of The Ldl		4e-04

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score =  219 bits (559), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 161/270 (59%), Gaps = 5/270 (1%)
Query: 5   DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
           D  +CK     +P L+F+N+  +R +    ++Y+L+  +L N +A+DFH++    +++DV
Sbjct: 77  DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV 135
Query: 65  AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
               I R+ +  +  E V+        GLAVDWV  KLYW D  + +++VA LDG +RK 
Sbjct: 136 TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195
Query: 125 LK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
           L   +++ PR I LHP  G +Y++ W     I    MDGS   R +  +  + WPN LT+
Sbjct: 196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTI 253
Query: 184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSIN 243
           DY   R+YW DA    I   +LDG H+  VIS Q +PH FA+T+FED +YWTDW+TKSIN
Sbjct: 254 DYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVFEDSLYWTDWHTKSIN 312
Query: 244 RADKFNGRDYRVLRNTTHRPYDIHVYHPLK 273
            A+KF G++  ++RN  H P DIH  HP +
Sbjct: 313 SANKFTGKNQEIIRNKLHFPMDIHTLHPQR 342

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQ 400
           +E   V    C  KC        C C+TGY+L EDG+ C D++EC E+ G CSQ
Sbjct: 3   EENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEE-GYCSQ 55

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score =  218 bits (554), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/270 (40%), Positives = 161/270 (59%), Gaps = 5/270 (1%)
Query: 5   DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV 64
           D  +CK     +P L+F+N+  +R +    ++Y+L+  +L N +A+DFH++    +++DV
Sbjct: 34  DRRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV 92
Query: 65  AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
               I R+ +  +  E V+        GLAVDWV  KLYW D  + +++VA LDG +RK 
Sbjct: 93  TLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 152
Query: 125 LK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
           L   +++ PR I LHP  G +Y++ W     I    MDGS   R +  +  + WPN LT+
Sbjct: 153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTI 210
Query: 184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSIN 243
           DY   R+YW DA    I   +LDG H+  VIS Q +PH FA+T+FED +YWTDW+TKSIN
Sbjct: 211 DYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITVFEDSLYWTDWHTKSIN 269
Query: 244 RADKFNGRDYRVLRNTTHRPYDIHVYHPLK 273
            A+KF G++  ++RN  H P DIH  HP +
Sbjct: 270 SANKFTGKNQEIIRNKLHFPMDIHTLHPQR 299

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score =  186 bits (473), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 157/271 (57%), Gaps = 9/271 (3%)
Query: 8   TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
            CK   SI  +L F+N++ VR M+LD ++Y+ +  +L NVVA+D     NR Y++D++ +
Sbjct: 370 ACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 428
Query: 68  TIYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123
            I  +++    G +  + VI  D    +GLAVDW+   +YW D     + VA+  G  RK
Sbjct: 429 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 488
Query: 124 TL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182
           TL +     PR I + P  G++Y++ W   A I K G++G +   ++T  ++I WPN +T
Sbjct: 489 TLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGIT 546
Query: 183 LDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKS 241
           LD  + RLYW D+ L  I+S+D++G ++  ++  +K + H F+L +FED ++WTD   ++
Sbjct: 547 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 606
Query: 242 INRADKFNGRDYRVLRNTTHRPYDIHVYHPL 272
           I  A++  G D  +L      P D+ ++H L
Sbjct: 607 IFSANRLTGSDVNLLAENLLSPEDMVLFHQL 637

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 79.0 bits (193), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 113/272 (41%), Gaps = 54/272 (19%)
Query: 309 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 368
           C  ++F+C +GKCI Y  VC+  ++C+D SDE     +    K     CG + V+     
Sbjct: 6   CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGR-VNRCIPQ 64
Query: 369 YCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLW 428
           +  C        DG+   D D   ++ G        C  + C +D EF C +G CI + +
Sbjct: 65  FWRC--------DGQ--VDCDNGSDEQG--------CPPKTCSQD-EFRCHDGKCISRQF 105
Query: 429 VCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELP 488
           VC           E +  C    C     +C   T   CIP+   CD   DC DGSDE P
Sbjct: 106 VCDSDRDCLDGSDEAS--CPVLTCGPASFQCNSST---CIPQLWACDNDPDCEDGSDEWP 160
Query: 489 QNC-----------PLESL------------GSVCNGVNDCKDNITSDETHARCPSNITC 525
           Q C           P  +                C+G  DCKD   SDE +    +  TC
Sbjct: 161 QRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDK--SDEENC---AVATC 215
Query: 526 PPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
            P   +C++ N C+     CD + DC DMSDE
Sbjct: 216 RPDEFQCSDGN-CIHGSRQCDREYDCKDMSDE 246

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score =  185 bits (470), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 157/271 (57%), Gaps = 9/271 (3%)
Query: 8   TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
            CK   SI  +L F+N++ VR M+LD ++Y+ +  +L NVVA+D     NR Y++D++ +
Sbjct: 388 ACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 446
Query: 68  TIYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123
            I  +++    G +  + VI  D    +GLAVDW+   +YW D     + VA+  G  RK
Sbjct: 447 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 506
Query: 124 TL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182
           TL +     PR I + P  G++Y++ W   A I K G++G +   ++T  ++I WPN +T
Sbjct: 507 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGIT 564
Query: 183 LDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKS 241
           LD  + RLYW D+ L  I+S+D++G ++  ++  +K + H F+L +FED ++WTD   ++
Sbjct: 565 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 624
Query: 242 INRADKFNGRDYRVLRNTTHRPYDIHVYHPL 272
           I  A++  G D  +L      P D+ ++H L
Sbjct: 625 IFSANRLTGSDVNLLAENLLSPEDMVLFHNL 655

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 114/279 (40%), Gaps = 54/279 (19%)
Query: 302 GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKC 361
           G      C  ++F+C +GKCI Y  VC+  ++C+D SDE     +    K     CG + 
Sbjct: 17  GTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGR- 75
Query: 362 VDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNG 421
           V+     +  C        DG+   D D   ++ G        C  + C +D EF C +G
Sbjct: 76  VNRCIPQFWRC--------DGQV--DCDNGSDEQG--------CPPKTCSQD-EFRCHDG 116
Query: 422 HCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCR 481
            CI + +VC           E +  C    C     +C   T   CIP+   CD   DC 
Sbjct: 117 KCISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCNSST---CIPQLWACDNDPDCE 171
Query: 482 DGSDELPQNC-----------PLESL------------GSVCNGVNDCKDNITSDETHAR 518
           DGSDE PQ C           P  +                C+G  DCKD   SDE +  
Sbjct: 172 DGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDK--SDEENC- 228
Query: 519 CPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
             +  TC P   +C++ N C+     CD + DC DMSDE
Sbjct: 229 --AVATCRPDEFQCSDGN-CIHGSRQCDREYDCKDMSDE 264

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score =  185 bits (470), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 11/259 (4%)
Query: 17  PWLIFSNKYYVRNMSLDATQ----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRS 72
           P L+++N+  +R   +DAT      ++V   L +  A+DF +     Y++DV+ + I R+
Sbjct: 5   PLLLYANRRDLR--LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 62
Query: 73  RVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQ 130
               TE  + V+       +GLA DW+G KLYW D  + +++V+ LDG+ RK L    + 
Sbjct: 63  EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 122
Query: 131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 190
            PR I L P  G++Y++ W     I + GMDGS  +R +    +I WPN LTLDY  ++L
Sbjct: 123 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKL 180
Query: 191 YWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
           YWADA L++I   +LDG ++  V+ G  +PH FALTLFED +YWTDW+T SI   +K+ G
Sbjct: 181 YWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTG 239
Query: 251 RDYRVLRNTTHRPYDIHVY 269
              R + +    P DIH +
Sbjct: 240 EGLREIHSDIFSPMDIHAF 258

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 117/306 (38%), Gaps = 31/306 (10%)
Query: 108 HSKQLDVAELDGTNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163
           ++ + D+  +D TN K   T     ++D   +      G +Y+S  + +A I +   + +
Sbjct: 9   YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA-IKRTEFNKT 67
Query: 164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHV 222
              + +     ++ P+ L  D+  E+LYW D+  + I   +LDG  + ++   +   P  
Sbjct: 68  ESVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 126
Query: 223 FALTLFEDHIYWTDWN-TKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP---------- 271
            AL      +YWTDW     I RA       + ++ +  + P  + + +           
Sbjct: 127 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 186
Query: 272 --------LKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCID 323
                   L GT R A +           +   +   +    +S  + +++     + I 
Sbjct: 187 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 246
Query: 324 YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTG--YYCECNTGYKLLED 381
             +    +        +P   N      ++   C H C+ +     Y C C TG KLLE+
Sbjct: 247 SDIFSPMDIHAFSQQRQP---NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 303
Query: 382 GKACTD 387
           GK C D
Sbjct: 304 GKTCKD 309

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score =  184 bits (468), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 11/259 (4%)
Query: 17  PWLIFSNKYYVRNMSLDATQ----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRS 72
           P L+++N+  +R   +DAT      ++V   L +  A+DF +     Y++DV+ + I R+
Sbjct: 2   PLLLYANRRDLR--LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 59
Query: 73  RVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQ 130
               TE  + V+       +GLA DW+G KLYW D  + +++V+ LDG+ RK L    + 
Sbjct: 60  EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 119
Query: 131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 190
            PR I L P  G++Y++ W     I + GMDGS  +R +    +I WPN LTLDY  ++L
Sbjct: 120 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKL 177
Query: 191 YWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
           YWADA L++I   +LDG ++  V+ G  +PH FALTLFED +YWTDW+T SI   +K+ G
Sbjct: 178 YWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTG 236
Query: 251 RDYRVLRNTTHRPYDIHVY 269
              R + +    P DIH +
Sbjct: 237 EGLREIHSDIFSPMDIHAF 255

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 117/306 (38%), Gaps = 31/306 (10%)
Query: 108 HSKQLDVAELDGTNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163
           ++ + D+  +D TN K   T     ++D   +      G +Y+S  + +A I +   + +
Sbjct: 6   YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA-IKRTEFNKT 64
Query: 164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHV 222
              + +     ++ P+ L  D+  E+LYW D+  + I   +LDG  + ++   +   P  
Sbjct: 65  ESVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 123
Query: 223 FALTLFEDHIYWTDWN-TKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP---------- 271
            AL      +YWTDW     I RA       + ++ +  + P  + + +           
Sbjct: 124 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 183
Query: 272 --------LKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCID 323
                   L GT R A +           +   +   +    +S  + +++     + I 
Sbjct: 184 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 243
Query: 324 YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTG--YYCECNTGYKLLED 381
             +    +        +P   N      ++   C H C+ +     Y C C TG KLLE+
Sbjct: 244 SDIFSPMDIHAFSQQRQP---NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 300
Query: 382 GKACTD 387
           GK C D
Sbjct: 301 GKTCKD 306

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 11/259 (4%)
Query: 17  PWLIFSNKYYVRNMSLDATQ----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRS 72
           P L+++N+  +R   +DAT      ++V   L +  A+DF +     Y++DV+ + I R+
Sbjct: 10  PLLLYANRRDLR--LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 67
Query: 73  RVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQ 130
               TE  + V+       +GLA DW+G KLYW D  + +++V+ LDG+ RK L    + 
Sbjct: 68  EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 127
Query: 131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 190
            PR I L P  G++Y++ W     I + GMDGS  +R +    +I WPN LTLDY  ++L
Sbjct: 128 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKL 185
Query: 191 YWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
           YWADA L++I   +LDG ++  V+ G  +PH FALTLFED +YWTDW+T SI   +K+ G
Sbjct: 186 YWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTG 244
Query: 251 RDYRVLRNTTHRPYDIHVY 269
              R + +    P DIH +
Sbjct: 245 EGLREIHSDIFSPMDIHAF 263

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 117/306 (38%), Gaps = 31/306 (10%)
Query: 108 HSKQLDVAELDGTNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163
           ++ + D+  +D TN K   T     ++D   +      G +Y+S  + +A I +   + +
Sbjct: 14  YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA-IKRTEFNKT 72
Query: 164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHV 222
              + +     ++ P+ L  D+  E+LYW D+  + I   +LDG  + ++   +   P  
Sbjct: 73  ESVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 131
Query: 223 FALTLFEDHIYWTDWN-TKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP---------- 271
            AL      +YWTDW     I RA       + ++ +  + P  + + +           
Sbjct: 132 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 191
Query: 272 --------LKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCID 323
                   L GT R A +           +   +   +    +S  + +++     + I 
Sbjct: 192 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 251
Query: 324 YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTG--YYCECNTGYKLLED 381
             +    +        +P   N      ++   C H C+ +     Y C C TG KLLE+
Sbjct: 252 SDIFSPMDIHAFSQQRQP---NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 308
Query: 382 GKACTD 387
           GK C D
Sbjct: 309 GKTCKD 314

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score =  183 bits (464), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 100/259 (38%), Positives = 151/259 (58%), Gaps = 11/259 (4%)
Query: 17  PWLIFSNKYYVRNMSLDATQ----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRS 72
           P L+++N+  +R   +DAT      ++V   L +  A+DF +     Y++DV+ + I R+
Sbjct: 2   PLLLYANRRDLR--LVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRT 59
Query: 73  RVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQ 130
               TE  + V+       +GLA DW+G KLYW D  + +++V+ LDG+ RK L    + 
Sbjct: 60  EFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELD 119
Query: 131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 190
            PR I L P  G++Y++ W     I + GMDGS  +R +    +I WPN LTLDY  ++L
Sbjct: 120 QPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS--SRFIIINSEIYWPNGLTLDYEEQKL 177
Query: 191 YWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
           YWADA L++I   +LDG ++  V+ G  +PH FALTLFED +YWTDW+T SI   +K+ G
Sbjct: 178 YWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTG 236
Query: 251 RDYRVLRNTTHRPYDIHVY 269
              R + +    P DIH +
Sbjct: 237 EGLREIHSDIFSPMDIHAF 255

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/306 (19%), Positives = 117/306 (38%), Gaps = 31/306 (10%)
Query: 108 HSKQLDVAELDGTNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163
           ++ + D+  +D TN K   T     ++D   +      G +Y+S  + +A I +   + +
Sbjct: 6   YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA-IKRTEFNKT 64
Query: 164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHV 222
              + +     ++ P+ L  D+  E+LYW D+  + I   +LDG  + ++   +   P  
Sbjct: 65  ESVQNVVVSGLLS-PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRA 123
Query: 223 FALTLFEDHIYWTDWN-TKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP---------- 271
            AL      +YWTDW     I RA       + ++ +  + P  + + +           
Sbjct: 124 IALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK 183
Query: 272 --------LKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCSSSQFRCNNGKCID 323
                   L GT R A +           +   +   +    +S  + +++     + I 
Sbjct: 184 LNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIH 243
Query: 324 YHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTG--YYCECNTGYKLLED 381
             +    +        +P   N      ++   C H C+ +     Y C C TG KLLE+
Sbjct: 244 SDIFSPMDIHAFSQQRQP---NATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 300
Query: 382 GKACTD 387
           GK C D
Sbjct: 301 GKTCKD 306

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score =  181 bits (460), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 157/271 (57%), Gaps = 9/271 (3%)
Query: 8   TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
            CK   SI  +L F+N++ VR M+LD ++Y+ +  +L NVVA+D     NR Y++D++ +
Sbjct: 116 ACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 174
Query: 68  TIYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123
            I  +++    G +  + VI  D    +GLAVDW+   +YW D     + VA+  G  RK
Sbjct: 175 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 234
Query: 124 TL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182
           TL +     PR I + P  G++Y++ W   A I K G++G +   ++T  ++I WPN +T
Sbjct: 235 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGIT 292
Query: 183 LDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKS 241
           LD  + RLYW D+ L  I+S+D++G ++  ++  +K + H F+L +FED ++WTD   ++
Sbjct: 293 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 352
Query: 242 INRADKFNGRDYRVLRNTTHRPYDIHVYHPL 272
           I  A++  G D  +L      P D+ ++H L
Sbjct: 353 IFSANRLTGSDVNLLAENLLSPEDMVLFHNL 383

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 312 SQFRCNNGKCIDYHLVCNKESDCEDDSDEPL-HCNVDECAKVETNQCGHKCVDTLTGYYC 370
           ++F+C++G+CI    VCN   DC D SDEP+  C  +EC       C H C D   GY C
Sbjct: 5   NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLD-NNGGCSHVCNDLKIGYEC 63
Query: 371 ECNTGYKLLEDGKACTDIDECIEQPGVCSQ 400
            C  G++L+   + C DIDEC + P  CSQ
Sbjct: 64  LCPDGFQLVAQ-RRCEDIDEC-QDPDTCSQ 91

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score =  180 bits (457), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 157/271 (57%), Gaps = 9/271 (3%)
Query: 8   TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
            CK   SI  +L F+N++ VR M+LD ++Y+ +  +L NVVA+D     NR Y++D++ +
Sbjct: 76  ACKAVGSIA-YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQR 134
Query: 68  TIYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123
            I  +++    G +  + VI  D    +GLAVDW+   +YW D     + VA+  G  RK
Sbjct: 135 MICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRK 194
Query: 124 TL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182
           TL +     PR I + P  G++Y++ W   A I K G++G +   ++T  ++I WPN +T
Sbjct: 195 TLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGIT 252
Query: 183 LDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKS 241
           LD  + RLYW D+ L  I+S+D++G ++  ++  +K + H F+L +FED ++WTD   ++
Sbjct: 253 LDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEA 312
Query: 242 INRADKFNGRDYRVLRNTTHRPYDIHVYHPL 272
           I  A++  G D  +L      P D+ ++H L
Sbjct: 313 IFSANRLTGSDVNLLAENLLSPEDMVLFHNL 343

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score =  173 bits (439), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 153/261 (58%), Gaps = 8/261 (3%)
Query: 18  WLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV--- 74
           +L F+N++ VR M+LD ++Y+ +  +L NVVA+D     NR Y++D++ + I  +++   
Sbjct: 3   YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA 62
Query: 75  -GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQDP 132
            G +  + VI  D    +GLAVDW+   +YW D     + VA+  G  RKTL +     P
Sbjct: 63  HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKP 122
Query: 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
           R I + P  G++Y++ W   A I K G++G +   ++T  ++I WPN +TLD  + RLYW
Sbjct: 123 RAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYW 180
Query: 193 ADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKSINRADKFNGR 251
            D+ L  I+S+D++G ++  ++  +K + H F+L +FED ++WTD   ++I  A++  G 
Sbjct: 181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240
Query: 252 DYRVLRNTTHRPYDIHVYHPL 272
           D  +L      P D+ ++H L
Sbjct: 241 DVNLLAENLLSPEDMVLFHNL 261

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score =  165 bits (417), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 148/258 (57%), Gaps = 8/258 (3%)
Query: 16  KPWLIFSNKYYVRNMSLDATQ--YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR 73
           + +L+FS +  +R +SL+      ++    +    A+DF   +NR Y+ D++ KTI R+ 
Sbjct: 6   EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 65
Query: 74  VGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDP 132
           +  +  E V+       EG+AVDW+G+ LYW D  + +++V++LDG +R+ L    +  P
Sbjct: 66  MNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP 125
Query: 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
           R + L P  G++Y++ W  +  I +  MDGS  T ++    ++   N LT+DY   RLYW
Sbjct: 126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYW 182
Query: 193 ADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252
            D   + I S ++ G ++ ++     +PH F LT ++D+IYWTDW+ +SI RA+K +G++
Sbjct: 183 TDLDTNLIESSNMLGLNREVI--ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 240
Query: 253 YRVLRNTTHRPYDIHVYH 270
             +++       DI V+H
Sbjct: 241 RTIIQGHLDYVMDILVFH 258

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score =  165 bits (417), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 148/258 (57%), Gaps = 8/258 (3%)
Query: 16  KPWLIFSNKYYVRNMSLDATQ--YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR 73
           + +L+FS +  +R +SL+      ++    +    A+DF   +NR Y+ D++ KTI R+ 
Sbjct: 4   EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 63
Query: 74  VGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDP 132
           +  +  E V+       EG+AVDW+G+ LYW D  + +++V++LDG +R+ L    +  P
Sbjct: 64  MNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP 123
Query: 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
           R + L P  G++Y++ W  +  I +  MDGS  T ++    ++   N LT+DY   RLYW
Sbjct: 124 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYW 180
Query: 193 ADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252
            D   + I S ++ G ++ ++     +PH F LT ++D+IYWTDW+ +SI RA+K +G++
Sbjct: 181 TDLDTNLIESSNMLGLNREVI--ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 238
Query: 253 YRVLRNTTHRPYDIHVYH 270
             +++       DI V+H
Sbjct: 239 RTIIQGHLDYVMDILVFH 256

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score =  164 bits (416), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 148/258 (57%), Gaps = 8/258 (3%)
Query: 16  KPWLIFSNKYYVRNMSLDATQ--YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR 73
           + +L+FS +  +R +SL+      ++    +    A+DF   +NR Y+ D++ KTI R+ 
Sbjct: 11  EAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF 70
Query: 74  VGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDP 132
           +  +  E V+       EG+AVDW+G+ LYW D  + +++V++LDG +R+ L    +  P
Sbjct: 71  MNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSP 130
Query: 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
           R + L P  G++Y++ W  +  I +  MDGS  T ++    ++   N LT+DY   RLYW
Sbjct: 131 RALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYW 187
Query: 193 ADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252
            D   + I S ++ G ++ ++     +PH F LT ++D+IYWTDW+ +SI RA+K +G++
Sbjct: 188 TDLDTNLIESSNMLGLNREVI--ADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQN 245
Query: 253 YRVLRNTTHRPYDIHVYH 270
             +++       DI V+H
Sbjct: 246 RTIIQGHLDYVMDILVFH 263

>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex Length = 267

Iteration: 1
 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 6/221 (2%)
Query: 28  RNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS 87
           RN        + +H     ++ + F   +   Y+ D++  +I R+ +   E   +IR D 
Sbjct: 19  RNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL 78
Query: 88  HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYF 146
              EG+A+D +GR ++W D    +++VA++DGT R+ L  T + +PRGI   P  G +Y+
Sbjct: 79  GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYW 138
Query: 147 SSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL 205
           + WN     I    MDG+N  R +  +D++  PN LT D F+ +L W DA       ++ 
Sbjct: 139 TDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196
Query: 206 DGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
               +  V+ G + P  FA+T +  ++Y+TDW T S+   D
Sbjct: 197 AQPGRRKVLEGLQYP--FAVTSYGKNLYYTDWKTNSVIAMD 235

>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second Ligand-Binding Modules Of The Human Ldl Receptor Length = 85

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 415 EFACRNGHCIPKLWVCXXXXXXXXXXXEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFC 474
           EF C++G CI   WVC           E    C    C  G   C G+ N RCIP++  C
Sbjct: 12  EFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVN-RCIPQFWRC 70
Query: 475 DGKDDCRDGSDE 486
           DG+ DC +GSDE
Sbjct: 71  DGQVDCDNGSDE 82

>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl Receptor Length = 83

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 312 SQFRCNNGKCIDYHLVCNKESDCEDDSDEPL-HCNVDECAKVETNQCGHKCVDTLTGYYC 370
           ++F+C++G+CI    VCN   DC D SDEP+  C  +EC       C H C D   GY C
Sbjct: 10  NKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLD-NNGGCSHVCNDLKIGYEC 68
Query: 371 ECNTGYKLL 379
            C  G++L+
Sbjct: 69  LCPDGFQLV 77

>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues 130-14 Length = 80

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
           TC P    C  T++CV   WLCDGD DC D +DE
Sbjct: 8   TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41

>pdb|2GTL|M Chain M, Lumbricus Erythrocruorin At 3.5a Resolution Length = 217

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 448 RQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLE--SLGSVCNGV 503
            + +C +    C G     CI   LFCDG+ DCRDGSDE P+ C L    +GS   G+
Sbjct: 50  EEHHCDEHESECRGDVP-ECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGL 106

>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1 Length = 50

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
           TC P    C  T++CV   WLCDGD DC D +DE
Sbjct: 6   TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 39

>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap) Length = 80

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 35/114 (30%)
Query: 450 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDN 509
           + C++   RC    + +CI +   CD   DC DGSDE   +CP+                
Sbjct: 1   KTCSQAEFRC---HDGKCISRQFVCDSDRDCLDGSDEA--SCPV---------------- 39
Query: 510 ITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ 563
                        +TC P   +C N++ C+   W CD D DC D SDE P  C+
Sbjct: 40  -------------LTCGPASFQC-NSSTCIPQLWACDNDPDCEDGSDEWPQRCR 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	573
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	2e-89
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	4e-83
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	2e-78
3v65_B	386	Low-density lipoprotein receptor-related protein;	3e-69
3v65_B	386	Low-density lipoprotein receptor-related protein;	5e-10
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-65
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-59
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	3e-06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	5e-64
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	4e-09
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	1e-04
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-63
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	6e-55
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	3e-62
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	5e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	7e-61
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-37
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	3e-32
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-26
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	4e-14
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-59
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-35
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-33
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	6e-32
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-19
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	2e-28
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	6e-06
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	1e-05
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	1e-23
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	2e-16
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	3e-11
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	2e-10
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	5e-10
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	5e-08
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	3e-23
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	4e-15
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	7e-11
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	1e-10
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	4e-10
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	4e-08
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	7e-16
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	5e-09
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	2e-14
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	2e-06
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-13
2xrc_A	565	Human complement factor I; immune system, hydrolas	6e-13
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-12
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-05
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	4e-13
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	3e-08
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	7e-07
3a7q_B	44	Low-density lipoprotein receptor-related protein;	1e-12
3a7q_B	44	Low-density lipoprotein receptor-related protein;	7e-10
3a7q_B	44	Low-density lipoprotein receptor-related protein;	1e-07
3a7q_B	44	Low-density lipoprotein receptor-related protein;	2e-07
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	3e-12
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	1e-08
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	1e-11
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	7e-10
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	5e-09
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	5e-07
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	1e-11
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	7e-09
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	1e-08
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	1e-06
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	2e-11
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	1e-10
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	7e-06
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-11
2bou_A	143	EGF-like module containing mucin-like hormone rece	7e-07
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-06
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	8e-11
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	8e-09
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	2e-06
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	6e-05
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	1e-10
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	2e-10
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	1e-09
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	3e-10
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	6e-04
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	4e-10
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	2e-07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	5e-05
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	7e-10
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	2e-09
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	3e-07
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	4e-06
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	9e-10
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	3e-06
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	1e-09
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	5e-09
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	4e-06
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	4e-05
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-09
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	6e-09
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	1e-08
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	2e-07
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	7e-07
1aut_L	114	Activated protein C; serine proteinase, plasma cal	8e-09
1aut_L	114	Activated protein C; serine proteinase, plasma cal	4e-04
1cr8_A	42	Protein (LOW density lipoprotein receptor related	9e-09
1cr8_A	42	Protein (LOW density lipoprotein receptor related	9e-08
1cr8_A	42	Protein (LOW density lipoprotein receptor related	6e-07
1cr8_A	42	Protein (LOW density lipoprotein receptor related	5e-06
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	1e-08
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	2e-08
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	1e-07
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-08
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	2e-04
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	4e-08
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	4e-08
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	5e-07
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	1e-06
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	4e-06
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	1e-07
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	6e-07
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	2e-06
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	3e-06
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	4e-05
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	1e-06
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	1e-06
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	2e-06
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	1e-05
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-06
2vh0_B	134	Activated factor XA light chain; serine protease,	2e-06
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	5e-06
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	5e-06
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	3e-05
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	9e-05
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	1e-04
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	9e-06
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	1e-05
1nzi_A	159	Complement C1S component; calcium, innate immunity	1e-05
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-04
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-04
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	1e-04
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	2e-04
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	1e-04
2wph_E	59	Coagulation factor IXA light chain; serine proteas	2e-04
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	2e-04
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	3e-04
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	5e-04
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	3e-04
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	4e-04
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	4e-04
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	6e-04
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score =  276 bits (707), Expect = 2e-89
 Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 13/262 (4%)

Query: 19  LIFSNKYYVRNMSLDATQYS------LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRS 72
           L+F+    +  + L+            +H     ++ + F   +   Y+ D++  +I R+
Sbjct: 4   LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63

Query: 73  RVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQD 131
            +   E   +IR D    EG+A+D +GR ++W D    +++VA++DGT R+ L  T + +
Sbjct: 64  SLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN 123

Query: 132 PRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 190
           PRGI   P  G +Y++ WN     I    MDG+N   +    D++  PN LT D F+ +L
Sbjct: 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ--DNLGLPNGLTFDAFSSQL 181

Query: 191 YWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
            W DA       ++     +  V+ G  + + FA+T +  ++Y+TDW T S+   D    
Sbjct: 182 CWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS 239

Query: 251 RDYRVL-RNTTHRPYDIHVYHP 271
           ++      +   R Y I +   
Sbjct: 240 KEMDTFHPHKQTRLYGITIALS 261

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score =  261 bits (668), Expect = 4e-83
 Identities = 101/375 (26%), Positives = 172/375 (45%), Gaps = 68/375 (18%)

Query: 17  PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV-- 74
            +L F+N++ VR M+LD ++Y+ +  +L NVVA+D     NR Y++D++ + I  +++  
Sbjct: 2   AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61

Query: 75  --GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQD 131
             G +  + VI  D    +GLAVDW+   +YW D     + VA+  G  RKTL +     
Sbjct: 62  AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121

Query: 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLY 191
           PR I + P  G++Y++ W   A I K G++G +   ++T  ++I WPN +TLD  + RLY
Sbjct: 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLY 179

Query: 192 WADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
           W D+ L  I+S+D++G ++  ++  +K + H F+L +FED ++WTD   ++I  A++  G
Sbjct: 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239

Query: 251 RDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCS 310
            D  +L      P D+ ++H L                                  + C 
Sbjct: 240 SDVNLLAENLLSPEDMVLFHNLTQPRGV----------------------------NWC- 270

Query: 311 SSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYC 370
             +   +NG C     +C         S                             + C
Sbjct: 271 -ERTTLSNGGC---QYLCLPAPQINPHS---------------------------PKFTC 299

Query: 371 ECNTGYKLLEDGKAC 385
            C  G  L  D ++C
Sbjct: 300 ACPDGMLLARDMRSC 314

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score =  249 bits (637), Expect = 2e-78
 Identities = 96/274 (35%), Positives = 149/274 (54%), Gaps = 7/274 (2%)

Query: 17  PWLIFSNKYYVRNMSL--DATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV 74
           P L+++N+  +R +         ++V   L +  A+DF +     Y++DV+ + I R+  
Sbjct: 5   PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF 64

Query: 75  -GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQDP 132
             +   + V+       +GLA DW+G KLYW D  + +++V+ LDG+ RK L    +  P
Sbjct: 65  NKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQP 124

Query: 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
           R I L P  G++Y++ W     I + GMDGS+   I+    +I WPN LTLDY  ++LYW
Sbjct: 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN--SEIYWPNGLTLDYEEQKLYW 182

Query: 193 ADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252
           ADA L++I   +LDG ++  V+ G  +PH FALTLFED +YWTDW+T SI   +K+ G  
Sbjct: 183 ADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241

Query: 253 YRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
            R + +    P DIH +   +            G
Sbjct: 242 LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG 275

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score =  227 bits (580), Expect = 3e-69
 Identities = 106/280 (37%), Positives = 157/280 (56%), Gaps = 4/280 (1%)

Query: 8   TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
              +    +P L+F+N+  +R +    ++Y+L+  +L N +A+DFH++    +++DV   
Sbjct: 79  RSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLD 138

Query: 68  TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-K 126
            I R+ +  +  E V+        GLAVDWV  KLYW D  + +++VA LDG +RK L  
Sbjct: 139 RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW 198

Query: 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
            +++ PR I LHP  G +Y++ W     I    MDGS    I      + WPN LT+DY 
Sbjct: 199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYA 256

Query: 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
             R+YW DA    I   +LDG H+  VIS   +PH FA+T+FED +YWTDW+TKSIN A+
Sbjct: 257 GRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWHTKSINSAN 315

Query: 247 KFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
           KF G++  ++RN  H P DIH  HP +          + G
Sbjct: 316 KFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNG 355

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 60.6 bits (146), Expect = 5e-10
 Identities = 29/134 (21%), Positives = 43/134 (32%), Gaps = 11/134 (8%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
            + C  V    C  KC        C C+TGY+L EDG+ C D++EC  + G CSQ    C
Sbjct: 3   EENCN-VNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC-AEEGYCSQ---GC 57

Query: 406 HNRP------CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERC 459
            N        C+   E       C               D  +      +          
Sbjct: 58  TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLEN 117

Query: 460 PGKTNYRCIPKWLF 473
               ++    + +F
Sbjct: 118 AIALDFHHRRELVF 131

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  223 bits (570), Expect = 2e-65
 Identities = 96/280 (34%), Positives = 149/280 (53%), Gaps = 7/280 (2%)

Query: 11  RRDSIKPWLIFSNKYYVRNMSLD--ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKT 68
                 P L+++N+  +R +         ++V   L +  A+DF +     Y++DV+ + 
Sbjct: 4   HHHHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA 63

Query: 69  IYRSR-VGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-K 126
           I R+    +   + V+       +GLA DW+G KLYW D  + +++V+ LDG+ RK L  
Sbjct: 64  IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW 123

Query: 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
             +  PR I L P  G++Y++ W     I + GMDGS+   I+    +I WPN LTLDY 
Sbjct: 124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN--SEIYWPNGLTLDYE 181

Query: 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
            ++LYWADA L++I   +LDG ++  V+ G  +PH FALTLFED +YWTDW+T SI   +
Sbjct: 182 EQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACN 240

Query: 247 KFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
           K+ G   R + +    P DIH +   +            G
Sbjct: 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG 280

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score =  207 bits (528), Expect = 2e-59
 Identities = 80/281 (28%), Positives = 142/281 (50%), Gaps = 8/281 (2%)

Query: 4   WDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYS---LVHQDLLNVVAMDFHYKENRFY 60
             E+    +D     L+ + +  +R +SLD   ++   L  +D+ + +A+D+   E   Y
Sbjct: 305 LLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIY 364

Query: 61  FADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120
           + D   + I RS +  +  + V+       +G+AVDWV R LYW D  + +++V  L+GT
Sbjct: 365 WTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424

Query: 121 NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179
            RK L    +++PR I L P +GY+Y++ W     I +  +DGS+   ++     + WPN
Sbjct: 425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN--TSLGWPN 482

Query: 180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT 239
            L LDY   ++YW DA  D I  ++ DG  + +++  + +PH+F  TL  D++YWTDW  
Sbjct: 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK-IPHIFGFTLLGDYVYWTDWQR 541

Query: 240 KSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAW 280
           +SI R  K +     V+ +       +   +  +    +  
Sbjct: 542 RSIERVHKRSAER-EVIIDQLPDLMGLKATNVHRVIGSNPC 581

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 3/134 (2%)

Query: 18  WLIFSNKYYVRNMSLDAT-QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS 76
           W  +     +   +LD + +  LV+  L     +   Y E + Y+ D     I       
Sbjct: 451 WTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 510

Query: 77  TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGIT 136
           T +  ++      + G  +   G  +YW D   + ++        R+ +   + D  G+ 
Sbjct: 511 TGRRVLVEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLK 568

Query: 137 LHPGIGYVYFSSWN 150
                  +  +   
Sbjct: 569 ATNVHRVIGSNPCA 582

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score =  214 bits (545), Expect = 5e-64
 Identities = 92/281 (32%), Positives = 157/281 (55%), Gaps = 9/281 (3%)

Query: 4   WDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFAD 63
                CK   SI  +L F+N++ VR M+LD ++Y+ +  +L NVVA+D     NR Y++D
Sbjct: 72  PHTKACKAVGSI-AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD 130

Query: 64  VAAKTIYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG 119
           ++ + I  +++    G +  + VI  D    +GLAVDW+   +YW D     + VA+  G
Sbjct: 131 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190

Query: 120 TNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP 178
             RKTL +     PR I + P  G++Y++ W   A I K G++G +   ++T  ++I WP
Sbjct: 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWP 248

Query: 179 NALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFEDHIYWTDW 237
           N +TLD  + RLYW D+ L  I+S+D++G ++  ++   +++ H F+L +FED ++WTD 
Sbjct: 249 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI 308

Query: 238 NTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRH 278
             ++I  A++  G D  +L      P D+ ++H L      
Sbjct: 309 INEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGV 349

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 57.5 bits (138), Expect = 4e-09
 Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 12/134 (8%)

Query: 347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCH 406
           +EC       C H C D   GY C C  G++L+   + C DIDEC + P  CSQ   +C 
Sbjct: 1   NEC-LDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDEC-QDPDTCSQ---LCV 54

Query: 407 NRP------CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCP 460
           N        C++  +       C     +         +  +      +        R  
Sbjct: 55  NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV 114

Query: 461 GKTNYRCIPKWLFC 474
              +       ++ 
Sbjct: 115 VALDTEVASNRIYW 128

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 14/143 (9%)

Query: 317 NNGKC--------IDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 368
           NNG C        I Y  +C                ++DEC   + + C   CV+   GY
Sbjct: 6   NNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQ--DPDTCSQLCVNLEGGY 60

Query: 369 YCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLW 428
            C+C  G++L    KAC  +                      +  +       + +    
Sbjct: 61  KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS-LIPNLRNVVALDT 119

Query: 429 VCDFDNDCGDDSDEPAYMCRQRN 451
               +     D  +      Q +
Sbjct: 120 EVASNRIYWSDLSQRMICSTQLD 142

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  218 bits (557), Expect = 2e-63
 Identities = 84/260 (32%), Positives = 148/260 (56%), Gaps = 8/260 (3%)

Query: 17  PWLIFSNKYYVRNMSLDATQYS--LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV 74
            +L+FS +  +R +SL+    +  +    +    A+DF   +NR Y+ D++ KTI R+ +
Sbjct: 7   AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFM 66

Query: 75  GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQDPR 133
             +  E V+       EG+AVDW+G+ LYW D  + +++V++LDG +R+ L    +  PR
Sbjct: 67  NGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPR 126

Query: 134 GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA 193
            + L P  G++Y++ W  +  I +  MDGS  T ++    ++   N LT+DY   RLYW 
Sbjct: 127 ALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYWT 183

Query: 194 DAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDY 253
           D   + I S ++ G ++ ++     +PH F LT ++D+IYWTDW+ +SI RA+K +G++ 
Sbjct: 184 DLDTNLIESSNMLGLNREVIADD--LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 241

Query: 254 RVLRNTTHRPYDIHVYHPLK 273
            +++       DI V+H  +
Sbjct: 242 TIIQGHLDYVMDILVFHSSR 261

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score =  195 bits (496), Expect = 6e-55
 Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 17/294 (5%)

Query: 2   PGWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYS---LVHQDLLNVVAMDFHYKENR 58
              D  TC        +L+FS K  +  M +D  Q     L    L NV A+D+   + +
Sbjct: 297 LNADNRTCSAPT---TFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQ 353

Query: 59  FYFADVAAKTIYRSRVGSTEKERVIRHDSHGL------EGLAVDWVGRKLYWLDRHSKQL 112
            Y+ D     I +++   ++   V+               L++D   R +YW    +  +
Sbjct: 354 LYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVI 413

Query: 113 DVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAY-IGKIGMDGSNFTRILT 170
           +V  LDG +   + K     PR + ++P  GY+YF++   ++  I +  +DG+    +  
Sbjct: 414 NVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFF 473

Query: 171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFED 230
               ++ P AL LD    +L+WAD+ L  I S DL G ++ ++     +     LT+FE+
Sbjct: 474 --SGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS-NILQPVGLTVFEN 530

Query: 231 HIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAH 284
            +YW D   + I + D         ++    +  DIH    L          A 
Sbjct: 531 WLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQ 584

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score =  208 bits (529), Expect = 3e-62
 Identities = 106/280 (37%), Positives = 159/280 (56%), Gaps = 4/280 (1%)

Query: 8   TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
              +    +P L+F+N+  +R +    ++Y+L+  +L N +A+DFH++    +++DV   
Sbjct: 36  RSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLD 95

Query: 68  TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-K 126
            I R+ +  +  E V+        GLAVDWV  KLYW D  + +++VA LDG +RK L  
Sbjct: 96  RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW 155

Query: 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
            +++ PR I LHP  G +Y++ W     I    MDGS   R +  +  + WPN LT+DY 
Sbjct: 156 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYA 213

Query: 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
             R+YW DA    I   +LDG H+  VIS   +PH FA+T+FED +YWTDW+TKSIN A+
Sbjct: 214 GRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWHTKSINSAN 272

Query: 247 KFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
           KF G++  ++RN  H P DIH  HP +          + G
Sbjct: 273 KFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNG 312

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
           V+ECA  E   C   C ++   + C C  GY+L  D ++C  +   
Sbjct: 1   VNECA--EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPE 44

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  213 bits (542), Expect = 7e-61
 Identities = 88/271 (32%), Positives = 154/271 (56%), Gaps = 8/271 (2%)

Query: 9   CKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKT 68
             +      +L F+N++ VR M+LD ++Y+ +  +L NVVA+D     NR Y++D++ + 
Sbjct: 370 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 429

Query: 69  IYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
           I  +++    G +  + VI  D    +GLAVDW+   +YW D     + VA+  G  RKT
Sbjct: 430 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 489

Query: 125 L-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
           L +     PR I + P  G++Y++ W   A I K G++G +   ++T  ++I WPN +TL
Sbjct: 490 LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITL 547

Query: 184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFEDHIYWTDWNTKSI 242
           D  + RLYW D+ L  I+S+D++G ++  ++   +++ H F+L +FED ++WTD   ++I
Sbjct: 548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 607

Query: 243 NRADKFNGRDYRVLRNTTHRPYDIHVYHPLK 273
             A++  G D  +L      P D+ ++H L 
Sbjct: 608 FSANRLTGSDVNLLAENLLSPEDMVLFHQLT 638

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  146 bits (368), Expect = 3e-37
 Identities = 75/292 (25%), Positives = 100/292 (34%), Gaps = 54/292 (18%)

Query: 305 ENSTCSSSQFRCNN--GKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCV 362
            + TC S  F C     +CI     C+ + DC++ SDE   C    C             
Sbjct: 43  LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE-QGCPPKTC------------- 88

Query: 363 DTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGH 422
              +     C+ G  +      C    +C++         A C    C     F C +  
Sbjct: 89  ---SQDEFRCHDGKCISRQFV-CDSDRDCLD-----GSDEASCPVLTCG-PASFQCNSST 138

Query: 423 CIPKLWVCDFDNDCGDDSDEPAYMCR--------QRNCTKGWERCPGKTNYRCIPKWLFC 474
           CIP+LW CD D DC D SDE    CR           C+     C    +  CI     C
Sbjct: 139 CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL---SGECIHSSWRC 195

Query: 475 DGKDDCRDGSDELPQNCPLESLGS-------------VCNGVNDCKDNITSDETHARCPS 521
           DG  DC+D SDE                          C+   DCKD   SDE       
Sbjct: 196 DGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDM--SDEVGCVNV- 252

Query: 522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
            +   P+  KC +   C+    +C+   DC D SDE    C    C  N+  
Sbjct: 253 TLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGG 303

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  131 bits (329), Expect = 3e-32
 Identities = 74/269 (27%), Positives = 102/269 (37%), Gaps = 51/269 (18%)

Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE-PLHCNVDECAKVETNQCGHKCVDT 364
              C  ++F+C +GKCI Y  VC+  ++C+D SDE    C    C   + +  G      
Sbjct: 3   GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCI 62

Query: 365 LTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCI 424
              + C+         D + C                      + C +D EF C +G CI
Sbjct: 63  PQFWRCDGQVDCDNGSDEQGCP--------------------PKTCSQD-EFRCHDGKCI 101

Query: 425 PKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGS 484
            + +VCD D DC D SDE    C    C     +C    +  CIP+   CD   DC DGS
Sbjct: 102 SRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCN---SSTCIPQLWACDNDPDCEDGS 156

Query: 485 DELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWL 544
           DE PQ C                        +     +  C      C +   C+   W 
Sbjct: 157 DEWPQRCR---------------------GLYVFQGDSSPCSAFEFHCLS-GECIHSSWR 194

Query: 545 CDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
           CDG  DC D SDE+   C   TC  + F+
Sbjct: 195 CDGGPDCKDKSDEEN--CAVATCRPDEFQ 221

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  112 bits (282), Expect = 2e-26
 Identities = 57/280 (20%), Positives = 82/280 (29%), Gaps = 36/280 (12%)

Query: 305 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDT 364
              TC  + F+CN+  CI     C+ + DCED SDE                   + +  
Sbjct: 123 PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW--------------PQRCRGLYV 168

Query: 365 LTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCI 424
             G    C+        G+       C   P    +           +  EF C +G+CI
Sbjct: 169 FQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCI 228

Query: 425 PKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGS 484
                CD + DC D SDE   +           +C    +  CI     C+   DCRD S
Sbjct: 229 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCH---SGECITLDKVCNMARDCRDWS 285

Query: 485 DELPQNCPLESLGS------------VCNGVNDCKD-------NITSDETHARCPSNITC 525
           DE  + C                          C D           D    + P   + 
Sbjct: 286 DEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ 345

Query: 526 PPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR 565
              +L+      C E + L      C  +     L    R
Sbjct: 346 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 385

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 74.5 bits (182), Expect = 4e-14
 Identities = 40/173 (23%), Positives = 53/173 (30%), Gaps = 13/173 (7%)

Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL 365
                 ++F+C++G+CI    VCN   DC D SDEP+              C H C D  
Sbjct: 253 TLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLK 312

Query: 366 TGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIP 425
            GY C C  G++ L   + C DIDEC +          +     C       C  G    
Sbjct: 313 IGYECLCPDGFQ-LVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ------CEEGFQ-- 363

Query: 426 KLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKD 478
                D            AY+                     IP        D
Sbjct: 364 ----LDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 412

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  210 bits (536), Expect = 1e-59
 Identities = 88/263 (33%), Positives = 153/263 (58%), Gaps = 8/263 (3%)

Query: 17  PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV-- 74
            +L F+N++ VR M+LD ++Y+ +  +L NVVA+D     NR Y++D++ + I  +++  
Sbjct: 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 455

Query: 75  --GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQD 131
             G +  + VI  D    +GLAVDW+   +YW D     + VA+  G  RKTL +     
Sbjct: 456 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 515

Query: 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLY 191
           PR I + P  G++Y++ W   A I K G++G +   ++T  ++I WPN +TLD  + RLY
Sbjct: 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLY 573

Query: 192 WADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
           W D+ L  I+S+D++G ++  ++   +++ H F+L +FED ++WTD   ++I  A++  G
Sbjct: 574 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 633

Query: 251 RDYRVLRNTTHRPYDIHVYHPLK 273
            D  +L      P D+ ++H L 
Sbjct: 634 SDVNLLAENLLSPEDMVLFHNLT 656

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  139 bits (352), Expect = 4e-35
 Identities = 78/275 (28%), Positives = 105/275 (38%), Gaps = 51/275 (18%)

Query: 300 GSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH 359
            +G      C  ++F+C +GKCI Y  VC+  ++C+D SDE     +    K     CG 
Sbjct: 15  AAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCG- 73

Query: 360 KCVDTLTGYYCECNTGYKLLEDGKACTD-IDECIEQPGVCSQYPAMCHNRPCDKDTEFAC 418
                  G    C   +   +    C +  DE    P  CS               EF C
Sbjct: 74  -------GRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCS-------------QDEFRC 113

Query: 419 RNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKD 478
            +G CI + +VCD D DC D SDE    C    C     +C    +  CIP+   CD   
Sbjct: 114 HDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCN---SSTCIPQLWACDNDP 168

Query: 479 DCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNIC 538
           DC DGSDE PQ C                        +     +  C      C +   C
Sbjct: 169 DCEDGSDEWPQRCR---------------------GLYVFQGDSSPCSAFEFHCLS-GEC 206

Query: 539 VEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
           +   W CDG  DC D SDE+  +C   TC  + F+
Sbjct: 207 IHSSWRCDGGPDCKDKSDEE--NCAVATCRPDEFQ 239

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  134 bits (339), Expect = 2e-33
 Identities = 70/269 (26%), Positives = 94/269 (34%), Gaps = 49/269 (18%)

Query: 305 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDT 364
              TCS  +FRC++GKCI    VC+ + DC D SDE   C V  C           C+  
Sbjct: 102 PPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNSSTCIPQ 160

Query: 365 LTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCI 424
           L  + C+ +   +   D                   Y     + PC    EF C +G CI
Sbjct: 161 L--WACDNDPDCEDGSDEWPQRC----------RGLYVFQGDSSPCSAF-EFHCLSGECI 207

Query: 425 PKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGS 484
              W CD   DC D SDE    C    C     +C    +  CI     CD + DC+D S
Sbjct: 208 HSSWRCDGGPDCKDKSDE--ENCAVATCRPDEFQCS---DGNCIHGSRQCDREYDCKDMS 262

Query: 485 DELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWL 544
           DE+                                   +   P+  KC +   C+    +
Sbjct: 263 DEVGCVNV-----------------------------TLCEGPNKFKCHS-GECITLDKV 292

Query: 545 CDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
           C+   DC D SDE    C    C  N+  
Sbjct: 293 CNMARDCRDWSDEPIKECGTNECLDNNGG 321

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  130 bits (327), Expect = 6e-32
 Identities = 71/228 (31%), Positives = 91/228 (39%), Gaps = 50/228 (21%)

Query: 367 GYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPK 426
           G+         L   G                           C+++ EF C++G CI  
Sbjct: 2   GWKLRWTVALLLAAAGT---------------------AVGDRCERN-EFQCQDGKCISY 39

Query: 427 LWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 486
            WVCD   +C D SDE    C    C  G   C G+ N RCIP++  CDG+ DC +GSDE
Sbjct: 40  KWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVN-RCIPQFWRCDGQVDCDNGSDE 98

Query: 487 L---PQNCPLE----------SLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCA 533
               P+ C  +          S   VC+   DC D   SDE  A CP   TC P   +C 
Sbjct: 99  QGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDG--SDE--ASCPVL-TCGPASFQCN 153

Query: 534 NTNICVEPYWLCDGDNDCGDMSDEDPLHCQ--------QRTCPQNSFR 573
           + + C+   W CD D DC D SDE P  C+           C    F 
Sbjct: 154 S-STCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH 200

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 92.2 bits (228), Expect = 1e-19
 Identities = 50/266 (18%), Positives = 77/266 (28%), Gaps = 36/266 (13%)

Query: 303 NKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCV 362
             ++S CS+ +F C +G+CI     C+   DC+D SDE  +C V  C             
Sbjct: 188 QGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE-ENCAVATC------------- 233

Query: 363 DTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGH 422
                   +C+ G   +   + C    +C +     S      +   C+   +F C +G 
Sbjct: 234 ---RPDEFQCSDG-NCIHGSRQCDREYDCKD----MSDEVGCVNVTLCEGPNKFKCHSGE 285

Query: 423 CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGK------------TNYRCIPK 470
           CI    VC+   DC D SDEP   C    C      C                +   +  
Sbjct: 286 CITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA 345

Query: 471 WLFCDGKDDCRDGSDELPQ--NCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPH 528
              C+  D+C+D         N           G              +      T    
Sbjct: 346 QRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 405

Query: 529 HLKCANTNICVEPYWLCDGDNDCGDM 554
             K                +    D 
Sbjct: 406 VRKMTLDRSEYTSLIPNLRNVVALDT 431

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score =  114 bits (286), Expect = 2e-28
 Identities = 32/250 (12%), Positives = 73/250 (29%), Gaps = 25/250 (10%)

Query: 10  KRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFA---DVAA 66
             +          ++  +  +  +    +++  D      +      N  Y+       A
Sbjct: 73  NNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD----PCIYASLIGNYIYYLHYDTQTA 128

Query: 67  KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK 126
            ++YR R+   EK+++  H          +   R  Y+ +  + QL   +    +     
Sbjct: 129 TSLYRIRIDGEEKKKIKNHY-----LFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF- 182

Query: 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
                     +      VY+   N    I  + ++  N   +   E +I   N +     
Sbjct: 183 --YDCNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT--EANIEHYN-VYGSLI 237

Query: 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
               Y        +  V  DG     +  G        + +   ++Y+TD+ +       
Sbjct: 238 ---FYQRGGDNPALCVVKNDGTGFKELAKG----EFCNINVTSQYVYFTDFVSNKEYCTS 290

Query: 247 KFNGRDYRVL 256
             N    + L
Sbjct: 291 TQNPDTIKAL 300

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 24/177 (13%), Positives = 62/177 (35%), Gaps = 32/177 (18%)

Query: 99  GRKLYWLD-RHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAY--- 154
             ++++ +   + +L    +DG+N   L     +   + ++    YVY+   N Q     
Sbjct: 25  DGEVFFSNTNDNGRLYAMNIDGSNIHKLS----NDTAMYINADKNYVYYVRNNNQKITSQ 80

Query: 155 ---------IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY---IAS 202
                    + +I  +G   T +     D     +L  +Y    +Y+          +  
Sbjct: 81  TFFSYDRNSLCRIKRNGHGSTVLD---PDPCIYASLIGNY----IYYLHYDTQTATSLYR 133

Query: 203 VDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNT 259
           + +DG+ K  + +     ++F     + + Y+ +     + R D    +   +  + 
Sbjct: 134 IRIDGEEKKKIKN----HYLFTCNTSDRYFYYNNPKNGQLYRYD-TASQSEALFYDC 185

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} Length = 302

 Score = 46.3 bits (109), Expect = 1e-05
 Identities = 16/135 (11%), Positives = 51/135 (37%), Gaps = 16/135 (11%)

Query: 142 GYVYFSSWNLQAYIGKIGMDGSNFTRILTH--------EDDIAWPNALTLDYFTERLYWA 193
           G V+FS+ N    +  + +DGSN  ++           ++ + +      +       + 
Sbjct: 26  GEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVR--NNNQKITSQTFF 83

Query: 194 DAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR--ADKFNGR 251
               + +  +  +G    ++     +      +L  ++IY+  ++T++       + +G 
Sbjct: 84  SYDRNSLCRIKRNGHGSTVLDPDPCIYA----SLIGNYIYYLHYDTQTATSLYRIRIDGE 139

Query: 252 DYRVLRNTTHRPYDI 266
           + + ++N      + 
Sbjct: 140 EKKKIKNHYLFTCNT 154

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 93.9 bits (234), Expect = 1e-23
 Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 6/84 (7%)

Query: 408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRC 467
           + C +  EF C +G CI + +VCD D DC D SDE +  C    C     +C    +  C
Sbjct: 1   KTCSQA-EFRCHDGKCISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCN---SSTC 54

Query: 468 IPKWLFCDGKDDCRDGSDELPQNC 491
           IP+   CD   DC DGSDE PQ C
Sbjct: 55  IPQLWACDNDPDCEDGSDEWPQRC 78

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 35/114 (30%)

Query: 450 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDN 509
           + C++   RC    + +CI +   CD   DC DGSDE   +CP                 
Sbjct: 1   KTCSQAEFRC---HDGKCISRQFVCDSDRDCLDGSDE--ASCP----------------- 38

Query: 510 ITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ 563
                        +TC P   +C + + C+   W CD D DC D SDE P  C+
Sbjct: 39  ------------VLTCGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWPQRCR 79

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 405 CHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCR 448
           C    C     F C +  CIP+LW CD D DC D SDE    CR
Sbjct: 37  CPVLTCGPA-SFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR 79

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 56.5 bits (137), Expect = 2e-10
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVE 353
           TCS ++FRC++GKCI    VC+ + DC D SDE   C V  C    
Sbjct: 2   TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPAS 46

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
           TC     +C +   C+   ++CD D DC D SDE    C   TC   SF+
Sbjct: 2   TCSQAEFRCHD-GKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQ 48

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 49.6 bits (119), Expect = 5e-08
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 305 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 345
              TC  + F+CN+  CI     C+ + DCED SDE     
Sbjct: 38  PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE-WPQR 77

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 92.7 bits (231), Expect = 3e-23
 Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 6/84 (7%)

Query: 408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRC 467
           R C  + +F+C +G CIP  W CD D+DCGD SDE A              C    N RC
Sbjct: 3   RTCPPN-QFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCN---NGRC 58

Query: 468 IPKWLFCDGKDDCRDGSDELPQNC 491
           I     CD  +DC D SDE    C
Sbjct: 59  ININWRCDNDNDCGDNSDE--AGC 80

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 69.6 bits (171), Expect = 4e-15
 Identities = 31/101 (30%), Positives = 33/101 (32%), Gaps = 32/101 (31%)

Query: 464 NYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNI 523
           + RCIP    CD  DDC D SDE                                C    
Sbjct: 14  SGRCIPISWTCDLDDDCGDRSDE--SAS---------------------------CAYPT 44

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ 564
             P     C N   C+   W CD DNDCGD SDE    C  
Sbjct: 45  CFPLTQFTCNNGR-CININWRCDNDNDCGDNSDE--AGCSH 82

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 57.7 bits (140), Expect = 7e-11
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCG-HKCVD 363
           TC  +QF C +G+CI     C+ + DC D SDE   C    C  +    C   +C++
Sbjct: 4   TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 56.9 bits (138), Expect = 1e-10
 Identities = 21/38 (55%), Positives = 23/38 (60%)

Query: 405 CHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE 442
           C    C   T+F C NG CI   W CD DNDCGD+SDE
Sbjct: 40  CAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE 77

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
           TCPP+   CA+   C+   W CD D+DCGD SDE          P   F 
Sbjct: 4   TCPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFT 52

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 345
            +    +QF CNNG+CI+ +  C+ ++DC D+SDE   C+
Sbjct: 43  PTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE-AGCS 81

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 71.9 bits (177), Expect = 7e-16
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
           VDEC+   +      C +    + CEC  GY+     K+C DIDEC E    C+Q   +C
Sbjct: 3   VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENM--CAQ---LC 57

Query: 406 HNRP 409
            N P
Sbjct: 58  VNYP 61

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 52.3 bits (126), Expect = 5e-09
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 25/93 (26%)

Query: 309 CSSSQFRCNNGKCID----YHLVCNK-------ESDCEDDSDEPLHCNVDECAKVETNQC 357
           CS     C    C +    +   C +          CED         +DEC+    N C
Sbjct: 6   CSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCED---------IDECS---ENMC 53

Query: 358 GHKCVDTLTGYYCECN--TGYKLLEDGKACTDI 388
              CV+   GY C C+   G+KL +D K+C  +
Sbjct: 54  AQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVV 86

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 333 DCEDDSDEPLH--CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDE 390
           D     +         +EC       C + C D   GY C C  G++L+   + C DIDE
Sbjct: 14  DIPTTENLYFQGAMGTNECL-DNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR-CEDIDE 71

Query: 391 CIEQPGVCSQYPAMCHNRP 409
           C + P  CSQ   +C N  
Sbjct: 72  C-QDPDTCSQ---LCVNLE 86

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 343 HCN-VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
            C  +DEC   + + C   CV+   GY C+C  G++L    KAC
Sbjct: 65  RCEDIDECQ--DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 72.3 bits (177), Expect = 1e-13
 Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 17/144 (11%)

Query: 386 TDIDECIEQPGVCSQYP----AMCHNRPCD--KDTEFACRNGHCIPKLWVCDFDNDCGDD 439
           T + EC         Y      +C+ +  D   D  F C NG  I ++  CD  NDCGD 
Sbjct: 173 TSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQ 232

Query: 440 SDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE----LPQNCPLES 495
           SDE         C     +     +  CIP    C+G+ DC  G DE       +   E 
Sbjct: 233 SDE-------LCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEE 285

Query: 496 LGSVCNGVNDCKDNITSDETHARC 519
              +   ++  +  I S      C
Sbjct: 286 TEILTADMDAERRRIKSLLPKLSC 309

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 70.3 bits (172), Expect = 6e-13
 Identities = 44/280 (15%), Positives = 76/280 (27%), Gaps = 51/280 (18%)

Query: 315 RCNNGKCI---DYHLVCNKESDCEDDSDEPL---HCNVDECAKVETNQCGHKCVDTLTGY 368
           RC  G C+    Y    N  + C  +             EC    T    +        +
Sbjct: 35  RCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLHPGTKFLNNGTCTAEGKF 94

Query: 369 YCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRN-----GHC 423
                 G    E G     + +  +   +C    +M       ++   AC +     G  
Sbjct: 95  SVSLKHGNTDSE-GIVEVKLVDQDKTMFICKSSWSM-------REANVACLDLGFQQGAD 146

Query: 424 IPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDG 483
             + +     +    +       CR    +             C        G  D  D 
Sbjct: 147 TQRRFKLSDLSINSTECLHV--HCRGLETSLA----------ECTFTKRRTMGYQDFADV 194

Query: 484 SDEL-PQNCPLE-----------SLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLK 531
                  + P++           S    C+G+NDC D   SDE   +      C      
Sbjct: 195 VCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQ--SDELCCKA-----CQGKGFH 247

Query: 532 CANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNS 571
           C  + +C+   + C+G+ DC    DE           + +
Sbjct: 248 C-KSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEET 286

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 69.6 bits (170), Expect = 1e-12
 Identities = 43/267 (16%), Positives = 73/267 (27%), Gaps = 36/267 (13%)

Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL 365
           N     +  +  + +C+           C  +    +           T+  G   V  +
Sbjct: 60  NRRSFPTYCQQKSLECLHPGTKFLNNGTCTAEGKFSV-----SLKHGNTDSEGIVEVKLV 114

Query: 366 T--GYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKD--TEFACRN- 420
                   C + + + E   AC D+     Q G  +Q      +   +        CR  
Sbjct: 115 DQDKTMFICKSSWSMREANVACLDLG---FQQGADTQRRFKLSDLSINSTECLHVHCRGL 171

Query: 421 ----GHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDG 476
                 C           D  D            +    + +C    N + I +   CDG
Sbjct: 172 ETSLAECTFTKRRTMGYQDFADVVCYTQKAD---SPMDDFFQC---VNGKYISQMKACDG 225

Query: 477 KDDCRDGSDELP-QNCPLESLG----------SVCNGVNDCKDNITSDETHARCPSNITC 525
            +DC D SDEL  + C  +               CNG  DC      DE      +++  
Sbjct: 226 INDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITG--EDEVGCAGFASVAQ 283

Query: 526 PPHHLKCANTNICVEPYWLCDGDNDCG 552
               +  A+ +              CG
Sbjct: 284 EETEILTADMDAERRRIKSLLPKLSCG 310

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 5/113 (4%)

Query: 303 NKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH-KC 361
            ++  +     F+C NGK I     C+  +DC D SDE L C      + +   C    C
Sbjct: 198 TQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDE-LCCK---ACQGKGFHCKSGVC 253

Query: 362 VDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDT 414
           + +      E +      E G A        E   + +   A           
Sbjct: 254 IPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPK 306

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 68.0 bits (165), Expect = 4e-13
 Identities = 30/190 (15%), Positives = 43/190 (22%), Gaps = 16/190 (8%)

Query: 379 LEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRN--GHCIPKLWVCDFDNDC 436
           +E+       D   +         +      CD+  E  CR     CI  L  CD + DC
Sbjct: 23  IEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEH-ESECRGDVPECIHDLLFCDGEKDC 81

Query: 437 GDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPK-WLFCDGKDDCRDGSDELPQNCPLES 495
            D SDE    C       G       T   C                     P    L +
Sbjct: 82  RDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRA 141

Query: 496 LGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMS 555
                             + H    S       +       +        +G     D +
Sbjct: 142 ------------TLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICDFN 189

Query: 556 DEDPLHCQQR 565
             D  H   +
Sbjct: 190 LGDDDHADCK 199

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 53.4 bits (127), Expect = 3e-08
 Identities = 24/188 (12%), Positives = 39/188 (20%), Gaps = 24/188 (12%)

Query: 303 NKENSTCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHK 360
           N E   C   +  C  +  +CI   L C+ E DC D SDE            +   C   
Sbjct: 48  NLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE------------DPETCSLN 95

Query: 361 CVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRN 420
                + Y            +          I      S +P             +    
Sbjct: 96  ITHVGSSYTGLATWTSCEDLNPDHA---IVTITAAHRKSFFPNRVW---LRATLSYELDE 149

Query: 421 GHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERC--PGKTNYRCIPKWLFCDGKD 478
                         + G           +         C      +     K +      
Sbjct: 150 HDHTVSTTQLRGFYNFGKRELLL--APLKGQSEGYGVICDFNLGDDDHADCKIVVPSSLF 207

Query: 479 DCRDGSDE 486
            C   + +
Sbjct: 208 VCAHFNAQ 215

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 49.5 bits (117), Expect = 7e-07
 Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 13/99 (13%)

Query: 473 FCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKC 532
                 D  +  ++L  +   +++  +   +++ +++   +           C       
Sbjct: 16  LAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDL--- 72

Query: 533 ANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNS 571
                       CDG+ DC D SDEDP  C        S
Sbjct: 73  ----------LFCDGEKDCRDGSDEDPETCSLNITHVGS 101

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 8/52 (15%)

Query: 403 AMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTK 454
                + C+KD +F CRN  CIP +W CD D+DC D SDE        +C K
Sbjct: 1   GSGPAKECEKD-QFQCRNERCIPSVWRCDEDDDCLDHSDE-------DDCPK 44

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 53.4 bits (129), Expect = 7e-10
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 302 GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 345
           G+     C   QF+C N +CI     C+++ DC D SDE   C 
Sbjct: 1   GSGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE-DDCP 43

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 519 CPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
                 C     +C N   C+   W CD D+DC D SDED
Sbjct: 2   SGPAKECEKDQFQCRNER-CIPSVWRCDEDDDCLDHSDED 40

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
              + C K   +C    N RCIP    CD  DDC D SDE   +CP
Sbjct: 3   GPAKECEKDQFQC---RNERCIPSVWRCDEDDDCLDHSDE--DDCP 43

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 61.5 bits (150), Expect = 3e-12
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKL-LEDGKACTDIDECIEQPGVCSQYPAM 404
           +DEC          +CV+T   + C+C+ GY+      K C DIDEC   P +C     +
Sbjct: 3   IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRG--GV 60

Query: 405 CHNRP 409
           CHN  
Sbjct: 61  CHNTE 65

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 21/89 (23%)

Query: 309 CSSSQFRCNNGKCI----DYHLVCNK--------ESDCEDDSDEPLHCNVDECAKVETNQ 356
           C  S   C  G+C+    D+   C++          +C D         +DEC +     
Sbjct: 6   CRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMD---------IDECQRDPLLC 56

Query: 357 CGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
            G  C +T   Y CEC  G++L  +  AC
Sbjct: 57  RGGVCHNTEGSYRCECPPGHQLSPNISAC 85

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 407 NRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQR 450
           +  C   T+F C +G CIP+ W CD DNDCGD SDE    C  +
Sbjct: 2   SHSCS-STQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 53.5 bits (129), Expect = 7e-10
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
           + +CSS+QF+CN+G+CI  H  C+ ++DC D SDE
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR 565
           + +C     KC +   C+  +W CDGDNDCGD SDE   +C  +
Sbjct: 2   SHSCSSTQFKCNSGR-CIPEHWTCDGDNDCGDYSDETHANCTNQ 44

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 449 QRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
             +C+    +C    + RCIP+   CDG +DC D SDE   NC
Sbjct: 2   SHSCSSTQFKC---NSGRCIPEHWTCDGDNDCGDYSDETHANC 41

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQ 449
             C +  EFAC N  CI + W CD DNDC D+SDE   +C Q
Sbjct: 4   PQC-QPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCHQ 44

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 50.8 bits (122), Expect = 7e-09
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 305 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
               C   +F C N +CI     C+ ++DC D+SDE
Sbjct: 2   SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ 564
            C P    CAN+  C++  W CDGDNDC D SDE P  C Q
Sbjct: 5   QCQPGEFACANSR-CIQERWKCDGDNDCLDNSDEAPALCHQ 44

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 15/29 (51%), Positives = 17/29 (58%)

Query: 463 TNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
            N RCI +   CDG +DC D SDE P  C
Sbjct: 14  ANSRCIQERWKCDGDNDCLDNSDEAPALC 42

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 344 CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPA 403
           C++ +       +       +     C    G++         DIDEC E PG+C     
Sbjct: 79  CSLGKAWG-TPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG--G 135

Query: 404 MCHNRP 409
            C N  
Sbjct: 136 KCINTF 141

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 26/144 (18%), Positives = 40/144 (27%), Gaps = 20/144 (13%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
           V+EC    T      CV+T   Y C+C   ++L      C D                  
Sbjct: 3   VNECL-DPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLD------IRP 55

Query: 406 HNRP----CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPG 461
                   C          G  + K   C           E        N ++    CPG
Sbjct: 56  RGDNGDTACS------NEIGVGVSKASCCCSLGKAWGTPCEMCPAV---NTSEYKILCPG 106

Query: 462 KTNYRCIPKWLFCDGKDDCRDGSD 485
              +R  P  +  +  D+C++   
Sbjct: 107 GEGFRPNPITVILEDIDECQELPG 130

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
           +DEC ++     G KC++T   + C C TGY L ED + C
Sbjct: 122 IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 21/114 (18%)

Query: 305 ENSTCSSSQF-RCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCG--HKC 361
           ++S+C ++   RCN G      ++      C+D         ++ECA +    CG    C
Sbjct: 11  QDSSCVNATACRCNPGFSSFSEIITTPMETCDD---------INECATLSKVSCGKFSDC 61

Query: 362 VDTLTGYYCECNTGYKLL--------EDGKACTDIDECIEQPGVCSQYPAMCHN 407
            +T   Y C C+ GY+ +        E    C D+DEC      C     +C N
Sbjct: 62  WNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSS-TVCFN 114

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 10/70 (14%)

Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYK-----LLEDGKACTDIDECIEQPGVCS 399
           +   CA          CV+      C CN G+      +    + C DI+EC     V  
Sbjct: 1   DSRGCA--RWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSC 55

Query: 400 QYPAMCHNRP 409
              + C N  
Sbjct: 56  GKFSDCWNTE 65

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 15/82 (18%)

Query: 315 RCNNG---KCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH--KCVDTLTGYY 369
            C+ G              E+ C+D         VDEC+    +QC     C +T+  Y 
Sbjct: 71  VCSPGYEPVSGAKTFKNESENTCQD---------VDECS-SGQHQCDSSTVCFNTVGSYS 120

Query: 370 CECNTGYKLLEDGKACTDIDEC 391
           C C  G+K             C
Sbjct: 121 CRCRPGWKPRHGIPNNQKDTVC 142

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 56.0 bits (136), Expect = 8e-11
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE 442
           PC    EF C +G CI   W CD   DC D SDE
Sbjct: 1   PCSAF-EFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 50.3 bits (121), Expect = 8e-09
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 309 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
           CS+ +F C +G+CI     C+   DC+D SDE
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
           C      C +   C+   W CDG  DC D SDE
Sbjct: 2   CSAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDE 33

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 466 RCIPKWLFCDGKDDCRDGSDELPQNC 491
            CI     CDG  DC+D SDE  +NC
Sbjct: 13  ECIHSSWRCDGGPDCKDKSDE--ENC 36

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 56.8 bits (138), Expect = 1e-10
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
           +DEC +        +C++T   Y CEC  GY L   G  C D DEC       +     C
Sbjct: 5   MDECKE-PDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGNG---TC 58

Query: 406 HNRP 409
            N  
Sbjct: 59  KNVI 62

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 60.3 bits (145), Expect = 2e-10
 Identities = 27/167 (16%), Positives = 42/167 (25%), Gaps = 12/167 (7%)

Query: 284 HRGSTTVADMIRSVYLGSGNKENSTCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDEP 341
                     +  +       E + C    F+C  N  +CI   LVC+   DC +  DE 
Sbjct: 28  EAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDED 87

Query: 342 LHCNVDECAKVETNQCG----HKCVDTLTGYYCECNTGYKLLEDGKACTDIDECI----E 393
                    K      G    H C+           T  K  +   A   +   +    E
Sbjct: 88  PDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELE 147

Query: 394 QPGVCSQYPAMCHNRPCDKDTEFACR--NGHCIPKLWVCDFDNDCGD 438
           + G                         + H      VC F+    +
Sbjct: 148 RHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNE 194

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 57.6 bits (138), Expect = 1e-09
 Identities = 20/147 (13%), Positives = 35/147 (23%), Gaps = 6/147 (4%)

Query: 409 PCDKDTEFACR--NGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYR 466
              +   F C      CI  L VCD   DC +  DE   +C       G       T + 
Sbjct: 51  THCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHG 110

Query: 467 CIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCP 526
           C+ +    D        + +  +                 +       +           
Sbjct: 111 CLAR---EDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSS-FNAKGYYNFA 166

Query: 527 PHHLKCANTNICVEPYWLCDGDNDCGD 553
              L    T+   +   +    N   +
Sbjct: 167 SRRLILLPTDDHDDHLAVVCSFNRGDN 193

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 24/105 (22%)

Query: 305 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDT 364
           +    +S    C  G    +  + ++   C+                     C   C   
Sbjct: 17  QPLDQTSYLCVCAEG----FAPIPHEPHRCQMFC--------------NQTACPADCDPN 58

Query: 365 LTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRP 409
            T   CEC  GY L +DG  CTDIDEC E  G CS    +CHN P
Sbjct: 59  -TQASCECPEGYIL-DDGFICTDIDEC-ENGGFCSG---VCHNLP 97

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 20/90 (22%)

Query: 303 NKENSTCSSSQFRCNNGKCIDYHLVCNK------ESDCEDDSDEPLHCNVDECAKVETNQ 356
            +     ++    C+          C +         C D         +DEC       
Sbjct: 42  CQMFCNQTACPADCDPN--TQASCECPEGYILDDGFICTD---------IDECE--NGGF 88

Query: 357 CGHKCVDTLTGYYCECNTGYKLL-EDGKAC 385
           C   C +    + C C     L  + G  C
Sbjct: 89  CSGVCHNLPGTFECICGPDSALAGQIGTDC 118

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 57.4 bits (139), Expect = 4e-10
 Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 20/119 (16%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
           +DEC    +      C ++   + CEC++   L      C +  +      V        
Sbjct: 4   IDECE--SSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGR---- 57

Query: 406 HNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEP-AYMCRQRNCTKGWERCPGKT 463
               C+ +   A     C      C                      C KG+ R  G  
Sbjct: 58  ----CEININGATLKSQC------CSSLGAAWGSPCTLCQVDPI---CGKGYSRIKGTQ 103

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 21/95 (22%), Positives = 24/95 (25%), Gaps = 16/95 (16%)

Query: 315 RCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNT 374
            C      D     N               ++                 TL      C  
Sbjct: 48  TCWQTVI-DGRCEININGATLKSQCC---SSLGAA---------WGSPCTLCQVDPICGK 94

Query: 375 GYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRP 409
           GY     G  C DIDEC   PGVC     +C N  
Sbjct: 95  GYSR-IKGTQCEDIDECEVFPGVCKN--GLCVNTR 126

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 17/95 (17%)

Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEP----------------LHC-NVDECA 350
           T    +   N          C+                              C ++DEC 
Sbjct: 52  TVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECE 111

Query: 351 KVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
                     CV+T   + C+C +G  L   G+ C
Sbjct: 112 VFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 53.9 bits (130), Expect = 7e-10
 Identities = 18/47 (38%), Positives = 21/47 (44%)

Query: 521 SNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTC 567
              TC P    C  T++CV   WLCDGD DC D +DE          
Sbjct: 3   EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNS 49

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 405 CHNRPCDKDTEFACRNGH-CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCT 453
              + C   + F+C   H C+P+ W+CD D DC D +DE        N T
Sbjct: 2   SEGKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 305 ENSTCSSSQFRCNNG-KCIDYHLVCNKESDCEDDSDEPLHCN 345
           E  TC  S F C     C+    +C+ + DC D +DE +   
Sbjct: 3   EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELP 488
              + C      CPG   + C+P+   CDG  DC DG+DE  
Sbjct: 2   SEGKTCGPSSFSCPG--THVCVPERWLCDGDKDCADGADESI 41

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 57.9 bits (139), Expect = 9e-10
 Identities = 26/155 (16%), Positives = 41/155 (26%), Gaps = 6/155 (3%)

Query: 360 KCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFAC- 418
           + +D L     +  T    +E         + I + G          +  CD+  E  C 
Sbjct: 5   EIIDKLIERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCDEH-EHQCG 63

Query: 419 -RNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGK 477
             +  CI KL+VCD  NDC +  DE    C                   C  +       
Sbjct: 64  GDDPQCISKLFVCDGHNDCRNGEDE--KDCTLPTKAGDKFIGDV-CFDHCTKRRPEHMTL 120

Query: 478 DDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITS 512
                             +        D  ++  S
Sbjct: 121 AFESSSIAAFFTPIADLHVHIEIESETDEDESEVS 155

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 47.5 bits (112), Expect = 3e-06
 Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 9/144 (6%)

Query: 303 NKENSTCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECA------KVET 354
             E+ +C   + +C  ++ +CI    VC+  +DC +  DE   C +   A       V  
Sbjct: 49  ELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE-KDCTLPTKAGDKFIGDVCF 107

Query: 355 NQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDT 414
           + C  +  + +T  +   +              I+   E     S+            D 
Sbjct: 108 DHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADH 167

Query: 415 EFACRNGHCIPKLWVCDFDNDCGD 438
                         V +FD    D
Sbjct: 168 RLTIHPPEEDGLGLVGEFDGYNFD 191

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 405 CHNRPCDKDTEFACRNGH-CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKT 463
              + C   + F+C   H C+P+ W+CD D DC D +DE        N T       G  
Sbjct: 4   LEGKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST-----GSGSG 57

Query: 464 NYRCIPKWLFCDG-KDDCRD 482
           +       +         R 
Sbjct: 58  SGSTEELRVRLASHLRKLRK 77

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 52.2 bits (125), Expect = 5e-09
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
           TC P    C  T++CV   WLCDGD DC D +DE         C  NS  
Sbjct: 8   TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI--AA--GCLYNSTG 53

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 44.1 bits (104), Expect = 4e-06
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 305 ENSTCSSSQFRC-NNGKCIDYHLVCNKESDCEDDSDE 340
           E  TC  S F C     C+    +C+ + DC D +DE
Sbjct: 5   EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
              + C      CPG   + C+P+   CDG  DC DG+DE      
Sbjct: 4   LEGKTCGPSSFSCPG--THVCVPERWLCDGDKDCADGADE--SIAA 45

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 34/203 (16%), Positives = 72/203 (35%), Gaps = 16/203 (7%)

Query: 48  VAMDFHYKENRFYFADVAAKTIYR-SRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD 106
           +      ++ + +F    A  I    + G  + E  +      +  L V  +G  +++ +
Sbjct: 25  ITSS---EDGKVWFTQHKANKISSLDQSGRIK-EFEVPTPDAKVMCLIVSSLGD-IWFTE 79

Query: 107 RHSKQLDVAELDGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF 165
             + ++      G   +  L      P GIT     G ++F+  N    IGK+  DG   
Sbjct: 80  NGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLN-GDRIGKLTADG-TI 136

Query: 166 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFA 224
                  +  ++P  +TL      L++ +   + I  +   GK +   +      P    
Sbjct: 137 YEY-DLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPV--G 192

Query: 225 LTLFED-HIYWTDWNTKSINRAD 246
           +T   D  +++ +     I R  
Sbjct: 193 ITSGNDGALWFVEIMGNKIGRIT 215

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 405 CHNRPCDKDTEFACRNGH-CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPG 461
                C    +F C +G  CI   + CD   DC D+SDE         C     R PG
Sbjct: 2   AMVLNC-TSAQFKCADGSSCINSRYRCDGVYDCRDNSDE-------AGCPT---RPPG 48

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 520 PSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
              + C     KCA+ + C+   + CDG  DC D SDE
Sbjct: 2   AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
               NCT    +C       CI     CDG  DCRD SDE    CP
Sbjct: 2   AMVLNCTSAQFKC--ADGSSCINSRYRCDGVYDCRDNSDE--AGCP 43

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 305 ENSTCSSSQFRCNNGK-CIDYHLVCNKESDCEDDSDE 340
               C+S+QF+C +G  CI+    C+   DC D+SDE
Sbjct: 3   MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 14/93 (15%)

Query: 306 NSTCSSSQFRCNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCG 358
                 +   C +G CID    +   C        C+ +       +   C+ ++   C 
Sbjct: 13  PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE------VSFLNCS-LDNGGCT 65

Query: 359 HKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
           H C++ +    C C  GYKL +D   C    + 
Sbjct: 66  HYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 10/69 (14%)

Query: 344 CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC---TDIDECIEQPGVCSQ 400
               E            C+D +  + C+C +G+    +G+ C        C    G C+ 
Sbjct: 11  VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW----EGRFCQREVSFLNCSLDNGGCTH 66

Query: 401 YPAMCHNRP 409
           Y   C    
Sbjct: 67  Y---CLEEV 72

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 50.3 bits (121), Expect = 9e-09
 Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 7/42 (16%)

Query: 402 PAMCHNRPCDKDTEFACR-NGHCIPKLWVCDFDNDCGDDSDE 442
           P  CH        EF CR +G CIP  W CD D DC D SDE
Sbjct: 1   PGGCH------TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
            C     +C    +C+   W CDGD DC D SDE 
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 307 STCSSSQFRCN-NGKCIDYHLVCNKESDCEDDSDE 340
             C + +F+C  +G CI     C+ ++DC D SDE
Sbjct: 2   GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
           C     +C  + +  CIP    CDG  DC D SDE  ++C 
Sbjct: 4   CHTDEFQC--RLDGLCIPLRWRCDGDTDCMDSSDE--KSCE 40

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Length = 55

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 357 CGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
           C   C +      C C  GY L ++GKAC      
Sbjct: 11  CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 56.2 bits (135), Expect = 2e-08
 Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 25/237 (10%)

Query: 343 HC-NVDECAKV----ETNQCGHKCVDTLTGYYCE-CNTGYK-----------LLEDGKAC 385
           HC ++DECA V     +     +CV+T  G++C  C   Y+              + + C
Sbjct: 40  HCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVC 99

Query: 386 TDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAY 445
              + C ++   C ++ A C       D  + C         +  D    CG+DSD   +
Sbjct: 100 EPENPCKDKTHNCHKH-AECIYLGHFSDPMYKCEC----QTGYAGD-GLICGEDSDLDGW 153

Query: 446 MCRQRNCTKGWERCPGKTNYRCIPKWLFCD-GKDDCRDGSDELPQNCPLE-SLGSVCNGV 503
                 C         K N   +P     D  KD   D  D+   N  +     +     
Sbjct: 154 PNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLF 213

Query: 504 NDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPL 560
           N  + +   DE   RC +            + N   +   +    +D  +  D  P 
Sbjct: 214 NPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPY 270

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 43/246 (17%), Positives = 69/246 (28%), Gaps = 32/246 (13%)

Query: 346 VDECAKVETNQC--GHKCVDTLTGYY--CECNTGYKLLEDGKACTDIDECIEQPGVCSQY 401
            D C    +N C  G +C     G +    C  G+    +G  C D+DEC   P +C   
Sbjct: 3   PDGCL---SNPCFPGAQCSSFPDGSWSCGFCPVGFL--GNGTHCEDLDECALVPDICFST 57

Query: 402 --PAMCHNRP----CDK-------DTEFACRNGHCIPKLWVCDFDNDCGDDSD---EPAY 445
                C N      C         +            +  VC+ +N C D +    + A 
Sbjct: 58  SKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAE 117

Query: 446 MCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVND 505
                + +    +C  +T Y          G+D   DG   L   C   +          
Sbjct: 118 CIYLGHFSDPMYKCECQTGYAGDG---LICGEDSDLDGWPNLNLVCATNATYHCIKDNCP 174

Query: 506 CKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR 565
              N   ++       +           N  +  E        N      D+D +  +  
Sbjct: 175 HLPNSGQED----FDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCD 230

Query: 566 TCPQNS 571
            CP   
Sbjct: 231 NCPYVH 236

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 12/223 (5%)

Query: 48  VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR 107
           + +     + + +     A  I    +     E  +      +  L +   G  +++ + 
Sbjct: 20  ITVS---DKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGE-VWFTEN 75

Query: 108 HSKQLDVAELDGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT 166
            + ++      G  ++ TL      P GIT  P  G ++F+  N    IG+I  DG    
Sbjct: 76  AANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMN-GNRIGRITDDG-KIR 132

Query: 167 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFAL 225
                 +  ++P+ +TL      L++ +   + I  +   G      I      P     
Sbjct: 133 EY-ELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITK 190

Query: 226 TLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHV 268
              +D +++ +     I R           +     RP+ I  
Sbjct: 191 GN-DDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITA 232

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 7/124 (5%)

Query: 124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
            L      P GIT+    G V+ +       I  I +DG   T       D A    LT+
Sbjct: 9   NLTNQDTGPYGITVSDK-GKVWITQHK-ANMISCINLDG-KITEYPLPTPD-AKVMCLTI 64

Query: 184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLFEDHIYWTDWNTKSI 242
                 +++ +   + I  +   G  K   +      P+          I++T+ N   I
Sbjct: 65  SS-DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRI 122

Query: 243 NRAD 246
            R  
Sbjct: 123 GRIT 126

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 346 VDECA-------KVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACT 386
           +DECA       +    QC H C + + GY+C C  GY+L ED  +C 
Sbjct: 4   LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 48.5 bits (116), Expect = 4e-08
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
           ++ C   +  C N   C+     C+G +DCG+ +DED
Sbjct: 4   DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADED 40

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
            +   C+ G+  C      +C+P+ L C+G DDC + +DE   NC
Sbjct: 2   SQDVKCSLGYFPCG--NITKCLPQLLHCNGVDDCGNQADE--DNC 42

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 405 CHNRPCDKDTEFACRNG-HCIPKLWVCDFDNDCGDDSDE 442
             +  C     F C N   C+P+L  C+  +DCG+ +DE
Sbjct: 2   SQDVKCSLG-YFPCGNITKCLPQLLHCNGVDDCGNQADE 39

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 305 ENSTCSSSQFRCNNG-KCIDYHLVCNKESDCEDDSDE 340
           ++  CS   F C N  KC+   L CN   DC + +DE
Sbjct: 3   QDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Length = 51

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 357 CGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
           C   C +  +   C C  GY L +D K+C   +  
Sbjct: 8   CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 404 MCHNRPCDKDTEFACR-----NGHCIPKLWVCDFDNDCGDDSDE 442
           +     C    +F C      +G C P+ W+CD   DC D  DE
Sbjct: 1   ISEFGSCPPG-QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 305 ENSTCSSSQFRC-----NNGKCIDYHLVCNKESDCEDDSDE 340
           E  +C   QFRC      +G+C     +C+   DC+D  DE
Sbjct: 3   EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)

Query: 521 SNITCPPHHLKCA----NTNICVEPYWLCDGDNDCGDMSDE 557
              +CPP   +C+        C    WLCDG  DC D  DE
Sbjct: 3   EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 446 MCRQRNCTKGWERC--PGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           +    +C  G  RC  P   +  C P+   CDG  DC DG DE    C
Sbjct: 1   ISEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGC 46

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)

Query: 407 NRPCDKDTEFACR-----NGHCIPKLWVCDFDNDCGDDSDE 442
           +  C    +F C      +G C P+ W+CD   DC D  DE
Sbjct: 2   SSRCPPG-QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)

Query: 306 NSTCSSSQFRC-----NNGKCIDYHLVCNKESDCEDDSDE 340
           +S C   QFRC      +G+C     +C+   DC+D  DE
Sbjct: 2   SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)

Query: 522 NITCPPHHLKCA----NTNICVEPYWLCDGDNDCGDMSDE 557
           +  CPP   +C+        C    WLCDG  DC D  DE
Sbjct: 2   SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 458 RCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
             P   +  C P+   CDG  DC DG DE    C 
Sbjct: 13  SEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGCG 45

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 316 CNNGKCIDYH--LVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECN 373
            +NG C D      C      E  + E      +EC    T+ C H C+     Y C C 
Sbjct: 14  LHNGSCQDSIWGYTCTCSPGYEGSNCE---LAKNECHPERTDGCQHFCLPGQESYTCSCA 70

Query: 374 TGYKLLEDGKACTDIDECIEQPGVCSQYPA 403
            GY+L ED K C   D+C        +   
Sbjct: 71  QGYRLGEDHKQCVPHDQCACGVLTSEKRAP 100

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 22/94 (23%)

Query: 316 CNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 368
            N GKC D    Y   C +     +CE  + +   C++D         C   C +     
Sbjct: 51  QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL--CSLDNG------DCDQFCHEEQNSV 102

Query: 369 YCECNTGYKLLEDGKACTDIDECIEQP----GVC 398
            C C  GY L ++G            P     + 
Sbjct: 103 VCSCARGYTLADNG---KACIPTGPYPCGKQTLE 133

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 8/102 (7%)

Query: 298 YLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCE-------DDSDEPLHCNVDECA 350
           Y    +              +G+CI  +L   + + C        +  DE       E A
Sbjct: 82  YTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETA 141

Query: 351 KVETN-QCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
                      C +    Y C+C  G+    +   C      
Sbjct: 142 CQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHH 183

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 42.3 bits (100), Expect = 5e-06
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 415 EFACRNGH--CIPKLWVCDFDNDCGDDSDE 442
           E +C      CIP  W CD +NDC    DE
Sbjct: 5   EISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 525 CPPHHLKCANTNI-CVEPYWLCDGDNDCGDMSDE 557
           C  H + C   +  C+   W CDG+NDC    DE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 38.9 bits (91), Expect = 9e-05
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
           C      C   +  +CIP    CDG++DC  G DE  +NC 
Sbjct: 1   CRIHEISCGAHST-QCIPVSWRCDGENDCDSGEDE--ENCG 38

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 309 CSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDE 340
           C   +  C  ++ +CI     C+ E+DC+   DE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 24/152 (15%), Positives = 40/152 (26%), Gaps = 43/152 (28%)

Query: 316 CNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 368
            N GKC D    Y   C +     +CE  + +   C++D         C   C +     
Sbjct: 51  QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK--LCSLDNG------DCDQFCHEEQNSV 102

Query: 369 YCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDT----EFACRNGHCI 424
            C C  GY L ++G            P         C  +  ++      +    +G   
Sbjct: 103 VCSCARGYTLADNG---KACIPTGPYP---------CGKQTLERRKRSVAQATSSSGEA- 149

Query: 425 PKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGW 456
                   D+      D              +
Sbjct: 150 -------PDSITWKPYDA----ADLDPTENPF 170

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Length = 353

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 31/218 (14%)

Query: 92  GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT------------AIQDPRGITLHP 139
           G  ++   + L++ +  +  +    +D    +                    PR +    
Sbjct: 93  GATINNTTQTLWFGNTVNSAVTA--IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD 150

Query: 140 GIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY 199
               VY S    ++ I  +  DG N       ++       L LD   +RLY  +A    
Sbjct: 151 ATNTVYISGIGKESVIWVV--DGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD-GE 207

Query: 200 IASVDL-DGK--HKHIVISGQKVPHVFALTLFED--HIYWTDWNTKSINRADKFNGRDYR 254
           + ++D  D K   +  ++   K      ++L       + TD            + R+  
Sbjct: 208 LITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA---AEVLVVDTRNGN 264

Query: 255 VLRN-TTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVA 291
           +L          + +++P       A+   HR +  V+
Sbjct: 265 ILAKVAAPESLAV-LFNP---ARNEAY-VTHRQAGKVS 297

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Length = 159

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 344 CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTD 387
            +++EC       C H C + + GY+C C   Y L +D K C  
Sbjct: 115 TDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 25/92 (27%)

Query: 317 NNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGH--KCVDTLTG 367
           N+  C+D    +  +C        CE         N DECA   ++ C H  +C+D +  
Sbjct: 55  NDATCLDQIGEFQCICMPGYEGVHCEV--------NTDECA---SSPCLHNGRCLDKINE 103

Query: 368 YYCECNTGYKLLEDGKAC-TDIDECIEQPGVC 398
           + CEC TG+     G  C  D+   ++   + 
Sbjct: 104 FQCECPTGFT----GHLCQVDLHHILDAQKMV 131

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 345 NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDGKAC-TDIDECIEQP 395
           +VDEC+    N C H  KC++TL  + C+C  GY     G  C  D++EC+  P
Sbjct: 4   DVDECSL-GANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNP 52

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 26/103 (25%), Positives = 31/103 (30%), Gaps = 26/103 (25%)

Query: 316 CNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL-TG 367
            N G C D    Y   C       +CE   D+     +      E   C   C D   T 
Sbjct: 56  QNGGSCKDQLQSYICFCLPAFEGRNCETHKDD---QLICVN---ENGGCEQYCSDHTGTK 109

Query: 368 YYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPC 410
             C C+ GY LL DG         +E P         C   P 
Sbjct: 110 RSCRCHEGYSLLADG---VSCTPTVEYP---------CGKIPI 140

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 26/109 (23%)

Query: 324 YHLVCNKESDCEDDSDEP-----LHC--NVDECAKVETNQC--GHKCVDTLTGYYCECNT 374
               C+ E   E   D            + D+CA   ++ C  G  C D L  Y C C  
Sbjct: 18  KEEQCSFEEAREIFKDAERTKLFWISYSDGDQCA---SSPCQNGGSCKDQLQSYICFCLP 74

Query: 375 GYKLLEDGKAC-TDIDECIEQP---GVCSQYPAMCHNRPCDKDTEFACR 419
            ++    G+ C T  D+ +      G C QY   C +      T+ +CR
Sbjct: 75  AFE----GRNCETHKDDQLICVNENGGCEQY---CSDHT---GTKRSCR 113

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Length = 328

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 23/199 (11%), Positives = 56/199 (28%), Gaps = 17/199 (8%)

Query: 54  YKENRFYFADVAAKTIYRSRVGSTEKERVI---RHDSHGLEGLAVDWVGRKLYWLDRHSK 110
             + + Y   +    I+     + E    I     D        +   G+ +Y     S 
Sbjct: 92  LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNC-WSY 150

Query: 111 QLDVAELDGTNRKTLKTAI--QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI 168
           Q  + ++D    K +        P  + +      ++  + +        G +  +  RI
Sbjct: 151 QNRILKIDTETDKVVDELTIGIQPTSLVMDKY-NKMWTIT-DGGYEGSPYGYEAPSLYRI 208

Query: 169 LTHEDDI---------AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKV 219
                 +          WP+ + L+   + LYW +  +  +         +  +      
Sbjct: 209 DAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTK 268

Query: 220 PHVFALTLFEDHIYWTDWN 238
            +   +      +Y  D  
Sbjct: 269 YYGLTVNPNNGEVYVADAI 287

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 357 CGHKCVDTL-TGYYCECNTGYKLLEDGKACTDIDEC 391
           C   C ++      C C  GY+L E+ K+C      
Sbjct: 9   CEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 346 VDECAKVETNQCGHKCVDTLTG-YYCECNTGYKLLEDGKACTDIDEC 391
              C   E   C   C D       C C+ GY LL DG +CT   E 
Sbjct: 5   QLICV-NENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 25/219 (11%)

Query: 91  EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT--AIQDPRGITLHPGIGYVYFSS 148
           +G+AV   G K+Y  +  S  + V  +D      + T      P GI ++P     Y + 
Sbjct: 161 KGIAVTPDGTKVYVANFDSMSISV--IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT- 217

Query: 149 WNLQAYIGKIGM-DGSNFT---RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVD 204
            N+  Y   + M D        RI         P  + +    +++Y A +  + ++ +D
Sbjct: 218 -NVDKYFNTVSMIDTGTNKITARIPVG----PDPAGIAVTPDGKKVYVALSFXNTVSVID 272

Query: 205 LDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPY 264
                    ++  K P+     +    +     +    +                     
Sbjct: 273 TATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNIT----------SGYIFLSE 322

Query: 265 DIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSGN 303
            +      K  T   W      S+   +     Y  +G 
Sbjct: 323 PVQFTDLSKDATEWKWDFGDGSSSKKQN-PTHTYSETGI 360

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Length = 391

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 38/212 (17%), Positives = 79/212 (37%), Gaps = 26/212 (12%)

Query: 92  GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT--AIQDPRGITLHPGIGYVYFSSW 149
           G  +   G K+Y  + HS  + +  +D      + T  A   P+G+ + P    VY ++ 
Sbjct: 36  GAVISPDGTKVYVANAHSNDVSI--IDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM 93

Query: 150 NLQAYIGKIGMDGSNFTRILTHEDDIA---WPNALTLDYFTERLYWADAHLDYIASVDLD 206
              + +  I  D ++ T   T    +     P  L L    ++LY  +     ++ ++  
Sbjct: 94  A-SSTLSVI--DTTSNTVAGT----VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV 146

Query: 207 GKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLR--NTTHRPY 264
            K     +S  + P   A+T     +Y  ++++ SI      +     V+        P 
Sbjct: 147 TKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI---SVIDTVTNSVIDTVKVEAAPS 203

Query: 265 DIHVYHPLKGTTRHAWLT---AHRGSTTVADM 293
            I   +P       A++T    +  + ++ D 
Sbjct: 204 GI-AVNP---EGTKAYVTNVDKYFNTVSMIDT 231

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 24/101 (23%)

Query: 316 CNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 368
            N G C D    Y   C       +CE D+        +         C   C       
Sbjct: 57  LNGGLCKDDINSYECWCQVGFEGKNCELDATC---NIKNGR-------CKQFCKTGADSK 106

Query: 369 Y-CECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNR 408
             C C TGY+L  D K        +  P  C    ++ H+ 
Sbjct: 107 VLCSCTTGYRLAPDQK---SCKPAVPFP--C-GRVSVSHSP 141

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 26/171 (15%)

Query: 56  ENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVA 115
            +   F+DV     +        +     H SH   G  ++  G  L       ++L+  
Sbjct: 39  RSAVIFSDVRQNRTW--AWSDDGQLSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQ 95

Query: 116 ELDGTNRKTLKTAIQDPRG-----ITLHPGIGYVYFSS------WNLQAYIGKIGMDGSN 164
              G   +++  + +  +      + L P  G ++FS          + Y G++ + G  
Sbjct: 96  REPGGEWESIADSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRW 154

Query: 165 FTRI------LTHEDDIAWPN--ALTLDYFTERLYWADAHLDYIASVDLDG 207
             R+           D   PN  A         L  +D   +      L+ 
Sbjct: 155 VFRLAPDGTLSAPIRDRVKPNGLAFLPS---GNLLVSDTGDNATHRYCLNA 202

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 357 CGHKCVDTL-TGYYCECNTGYKLLEDGKACTDIDEC 391
           C   C D   T   C C+ GY LL DG +CT   E 
Sbjct: 9   CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 21/123 (17%), Positives = 31/123 (25%), Gaps = 16/123 (13%)

Query: 370 CECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWV 429
             C TGY+LL+            ++ G   +    C    C    +    +G       +
Sbjct: 43  IFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDD--LPSGRVEY---I 97

Query: 430 CDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQ 489
                       +  Y C +   T           Y C       DG      G   LP 
Sbjct: 98  TGPGVTTYKAVIQ--YSCEETFYTM----KVNDGKYVCE-----ADGFWTSSKGEKSLPV 146

Query: 490 NCP 492
             P
Sbjct: 147 CEP 149

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 5/58 (8%)

Query: 344 CNVDECAKVETN--QCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCS 399
                CA            C D  TG+ C C   Y    +G+ C          G   
Sbjct: 3   LAQQTCANNRHQCSVHAE-CRDYATGFCCRCVANYT--GNGRQCVAEGSPQRVNGKVK 57

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 7e-04
 Identities = 62/440 (14%), Positives = 127/440 (28%), Gaps = 116/440 (26%)

Query: 17  PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS 76
            +L+   K   R  S+    Y      L N   +   Y  +R        + +   R   
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA- 150

Query: 77  TEKERVIRHDSHGLEG-----LAVDWV---------GRKLYWLDRHSKQLDVAELDGTNR 122
              + V+     G+ G     +A+D             K++WL+   K  +  E      
Sbjct: 151 ---KNVL---IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEML 202

Query: 123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR---ILTHEDDIAWPN 179
           + L   I DP   +       +     ++QA + ++ +    +     +L    ++   N
Sbjct: 203 QKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVL---LNV-Q-N 255

Query: 180 ALTLDYF--------TERLYWADAHL-DYIAS-----VDLDGKH-------------KHI 212
           A   + F        T R       + D++++     + LD                K++
Sbjct: 256 AKAWNAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 213 VISGQKVPHV------FALTLF-----EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTH 261
               Q +P          L++      +    W +W   + ++          VL    +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 262 R---------PYDIHVYHPLKGTTRHAWLTAHRGSTTVADMI------RSVYLGSGNKEN 306
           R         P   H+  P        W        +   ++       S  L     + 
Sbjct: 372 RKMFDRLSVFPPSAHI--PTI-LLSLIWF---DVIKSDVMVVVNKLHKYS--LVEKQPKE 423

Query: 307 STCSSSQFRCNNGKCI-DYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCV-DT 364
           ST S           I   +L    E   + +++  LH ++ +   +         +   
Sbjct: 424 STIS-----------IPSIYL----ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468

Query: 365 LTGYYCECNTGYKLLEDGKA 384
           L  Y+   + G+ L      
Sbjct: 469 LDQYFYS-HIGHHLKNIEHP 487

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	573
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	100.0
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	100.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	100.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	100.0
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.96
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.96
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.96
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.96
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.95
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.93
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.87
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.86
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.86
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.85
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.84
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.83
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	99.82
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.81
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.81
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.8
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.79
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.79
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.77
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.76
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.76
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.74
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.74
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.74
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.74
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.74
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.74
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.73
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.71
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.68
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.68
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.66
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.65
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.64
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.61
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.61
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.59
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.59
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.59
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.58
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.56
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.56
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.55
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.53
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.53
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.53
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.53
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.52
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.52
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.49
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.49
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.48
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.48
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.47
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.43
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.42
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.41
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.39
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.39
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.39
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.38
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.37
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.36
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.35
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.34
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.34
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.3
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.29
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.29
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.28
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.27
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.24
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.23
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.22
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.22
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.22
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.21
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.2
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.18
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.18
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.18
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.18
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.17
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.16
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.16
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.16
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.15
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.15
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.15
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.14
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.13
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.12
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.11
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	99.11
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.11
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.1
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.1
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.08
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.08
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.07
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.06
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.06
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	99.05
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.05
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	99.04
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.03
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.0
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.99
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	98.98
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.98
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	98.96
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.94
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.93
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.93
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.92
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	98.92
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.92
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.91
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.9
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.89
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.85
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.83
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	98.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	98.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.79
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.78
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	98.78
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.78
3a7q_B	44	Low-density lipoprotein receptor-related protein;	98.78
2m0p_A	52	Low-density lipoprotein receptor-related protein;	98.78
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.77
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	98.77
1cr8_A	42	Protein (LOW density lipoprotein receptor related	98.76
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.74
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.73
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.73
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.7
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.69
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.68
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.66
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	98.66
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.65
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.65
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.58
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.56
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.54
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.47
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.46
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.42
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.41
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.4
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.39
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.38
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.36
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.34
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.34
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.34
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.32
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.3
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.29
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.27
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.27
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.23
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.21
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.21
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.19
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.19
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.18
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.17
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.17
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.17
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.16
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.15
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.14
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.14
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.14
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.13
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.13
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.1
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.1
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	98.1
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.09
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.09
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.08
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.08
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.06
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.05
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.04
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.03
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.03
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.02
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.02
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.01
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.0
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	97.99
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.99
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	97.98
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.95
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.93
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.85
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.85
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.84
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	97.83
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	97.82
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.82
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.79
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.78
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	97.73
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.72
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.72
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	97.72
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.71
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	97.7
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.68
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.68
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	97.67
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	97.66
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	97.66
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.65
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.65
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.64
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.62
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.62
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	97.61
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.55
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.5
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.48
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.48
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.44
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.44
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	97.44
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.41
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	97.41
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.38
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.36
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	97.33
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.32
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.31
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.31
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	97.29
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.28
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.25
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	97.23
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.22
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.22
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.21
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.2
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.2
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	97.2
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.19
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	97.19
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.17
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.15
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	97.15
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.12
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	97.11
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.1
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.09
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	97.08
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.06
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.04
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	97.04
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	97.03
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.98
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	96.97
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	96.97
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.94
2bou_A	143	EGF-like module containing mucin-like hormone rece	96.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.88
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.87
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.86
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.85
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	96.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	96.83
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.82
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.8
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.78
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	96.75
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.75
3jro_A	753	Fusion protein of protein transport protein SEC13	96.72
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	96.67
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	96.66
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	96.64
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	96.55
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	96.54
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	96.5
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	96.49
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.47
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.44
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	96.4
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.39
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	96.32
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.32
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	96.3
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.25
3jro_A	753	Fusion protein of protein transport protein SEC13	96.21
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	96.19
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	96.16
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.11
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	96.1
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	96.09
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.02
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	95.97
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.96
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	95.9
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	95.86
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	95.84
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	95.84
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.8
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	95.76
3ott_A	758	Two-component system sensor histidine kinase; beta	95.75
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	95.74
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	95.68
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	95.65
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	95.61
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.59
2pm7_B	297	Protein transport protein SEC13, protein transport	95.58
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	95.52
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	95.51
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	95.44
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	95.42
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	95.37
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	95.27
2pm7_B	297	Protein transport protein SEC13, protein transport	95.17
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	95.16
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	95.15
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	95.13
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	95.11
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	95.11
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	95.03
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	95.02
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	94.94
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	94.94
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	94.84
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	94.78
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	94.64
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	94.64
3ott_A	758	Two-component system sensor histidine kinase; beta	94.58
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	94.3
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	94.23
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	94.13
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	94.08
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	94.05
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	93.99
2bou_A	143	EGF-like module containing mucin-like hormone rece	93.98
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	93.98
2wph_E	59	Coagulation factor IXA light chain; serine proteas	93.78
2wph_E	59	Coagulation factor IXA light chain; serine proteas	93.77
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.68
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	93.62
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	93.08
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	92.96
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	92.93
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	92.76
1aut_L	114	Activated protein C; serine proteinase, plasma cal	92.61
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	92.39
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	92.38
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	92.31
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	92.23
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.14
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	91.84
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.04
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	90.96
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	90.86
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	90.8
2vh0_B	134	Activated factor XA light chain; serine protease,	90.32
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	90.04
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	89.91
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	89.51
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	89.39
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	89.27
3f6k_A	685	Sortilin; protein sorting receptor, 10-bladed beta	89.19
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	89.19
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	89.06
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	89.03
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.65
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	88.4
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	88.16
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	87.43
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	87.18
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	86.85
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	86.36
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	86.17
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.15
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	86.01
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	85.4
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	85.36
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	85.14
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	83.87
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	83.79
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	82.98
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	82.94
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	81.07

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=100.00  E-value=9e-52  Score=425.49  Aligned_cols=297  Identities=38%  Similarity=0.724  Sum_probs=274.7

Q ss_pred             CCCC----CCCceeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC
Q psy952            1 MPGW----DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS   76 (573)
Q Consensus         1 ~~g~----dg~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g   76 (573)
                      +|||    |+++|++.. ++++|+|++.+.|+++++++..++.++..+.+|.+|+||+.+++|||+|...++|+|++++|
T Consensus        26 ~~g~~l~~d~~~C~~~~-~~~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g  104 (349)
T 3v64_C           26 EAGYELRPDRRSCKALG-PEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNG  104 (349)
T ss_dssp             CTTEEECTTSSCEEESS-SCCEEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCccCCCCCCcccccc-cCceeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCC
Confidence            3666    899999975 58999999999999999999988888888999999999999999999999999999999999


Q ss_pred             CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeE
Q psy952           77 TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYI  155 (573)
Q Consensus        77 ~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I  155 (573)
                      +..+.++..++..|.|||+||.+++|||+|...++|++++++|..+++++ ..+..|++|||||..|+|||+|++..++|
T Consensus       105 ~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          105 SNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEE
Confidence            88888888888999999999999999999999999999999999988877 57889999999999999999999865899


Q ss_pred             EEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEe
Q psy952          156 GKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWT  235 (573)
Q Consensus       156 ~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywt  235 (573)
                      +|+++||+.+++++  ...+.+|+|||+|+.+++|||+|+..++|++++++|+.+++++... +.+|+||++++++||||
T Consensus       185 ~r~~~dG~~~~~~~--~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~giav~~~~ly~t  261 (349)
T 3v64_C          185 EASSMDGSGRRIIA--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWT  261 (349)
T ss_dssp             EEEETTSCSCEESC--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSSEEEEEEETTEEEEE
T ss_pred             EEEeCCCCCcEEEE--ECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC-CCCceEEEEECCEEEEe
Confidence            99999999999888  6789999999999999999999999999999999999998888765 88999999999999999


Q ss_pred             cCCCCceEEEeccCCcceEEEcccCCCceeeeeeecCC------------CcccccccccccCccceee-eccceeecCC
Q psy952          236 DWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWLTAHRGSTTVAD-MIRSVYLGSG  302 (573)
Q Consensus       236 d~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~~~------------~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d  302 (573)
                      ||.+++|.+++|.+|+.++++...+..|++|+|+|+.+            ++|+|+|++.+   ..++| ||.+|. ..|
T Consensus       262 d~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~qp~~~n~C~~~~g~C~~lCl~~~---~~~~C~C~~g~~-~~d  337 (349)
T 3v64_C          262 DWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSG---QNYTCACPTGFR-KIN  337 (349)
T ss_dssp             ETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGGSCCCCCTTTTGGGGCSSEEECCT---TSCEEECCTTEE-EET
T ss_pred             cCCCCeEEEEEccCCCccEEeccCCCCCceEEEEccccCccccCcccCCCCCcccEeecCC---CCCeeECCCCCc-CCC
Confidence            99999999999999999999988889999999999863            67999999998   47999 999999 777


Q ss_pred             CCC
Q psy952          303 NKE  305 (573)
Q Consensus       303 ~~~  305 (573)
                      +++
T Consensus       338 ~~~  340 (349)
T 3v64_C          338 SHA  340 (349)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=100.00  E-value=2.7e-51  Score=429.41  Aligned_cols=301  Identities=31%  Similarity=0.635  Sum_probs=273.2

Q ss_pred             CCC----CCCceeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC-
Q psy952            2 PGW----DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS-   76 (573)
Q Consensus         2 ~g~----dg~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g-   76 (573)
                      |||    ++++|++. ++.+||++++++.|+++++++..++.++..+..|.+|+||+.+++|||+|...++|++++++| 
T Consensus        66 ~g~~~~~~~~~C~~~-~~~~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~  144 (400)
T 3p5b_L           66 EGFQLDPHTKACKAV-GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRA  144 (400)
T ss_dssp             TTCCCCTTTSSCCCS-TTSCEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---
T ss_pred             ccccccccccceeec-cccceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccC
Confidence            566    78999987 478999999999999999999988888889999999999999999999999999999999998 


Q ss_pred             ---CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCc
Q psy952           77 ---TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQ  152 (573)
Q Consensus        77 ---~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~  152 (573)
                         +..++++..++..|.||||||++++|||+|...++|++++++|..+++++ ..+..|++|||||..|+||||||+..
T Consensus       145 ~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~  224 (400)
T 3p5b_L          145 HGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP  224 (400)
T ss_dssp             ---CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS
T ss_pred             CCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCC
Confidence               45667777788999999999999999999999999999999999988887 47888999999999999999999877


Q ss_pred             CeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-CccceeEEEeeeCCe
Q psy952          153 AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFEDH  231 (573)
Q Consensus       153 ~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~~~~~p~~ia~~~~~  231 (573)
                      ++|+|++|+|+.+++++  ...+.+|+|||||+.+++|||+|+..++|++++++|..+++++.. ..+.+|+||++++++
T Consensus       225 ~~I~~~~~dG~~~~~~~--~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~  302 (400)
T 3p5b_L          225 AKIKKGGLNGVDIYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDK  302 (400)
T ss_dssp             CCEEEEETTSCSCEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEETTE
T ss_pred             CEEEEEeCCCCccEEEE--ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEeCCE
Confidence            89999999999999998  688999999999999999999999999999999999999888864 237899999999999


Q ss_pred             EEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeeecCC---------------Cccccccccccc---Cccceee-
Q psy952          232 IYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK---------------GTTRHAWLTAHR---GSTTVAD-  292 (573)
Q Consensus       232 lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~~~---------------~~Cs~lCl~~~~---~~~~~~C-  292 (573)
                      |||+||.+++|++++|.+|+.+.+|...+..|++|+|+|+.+               ++|+|+|++.+.   .+..++| 
T Consensus       303 lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~c~~~~~~ng~C~~lC~~~~~~~~~~~~~~C~  382 (400)
T 3p5b_L          303 VFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCA  382 (400)
T ss_dssp             EEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEESGGGSCCCCCSSSSSSSGGGGCSSEEEECCCSSTTCCSEEEE
T ss_pred             EEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEEeeccCCCCCCccccccCCCcCcCCeecCCCcccCCCCCeeEE
Confidence            999999999999999999999999988888999999999752               589999999872   1236899 


Q ss_pred             eccceeecCCCCC
Q psy952          293 MIRSVYLGSGNKE  305 (573)
Q Consensus       293 Cp~~~~l~~d~~~  305 (573)
                      ||.+|.|..|+++
T Consensus       383 C~~g~~l~~d~~~  395 (400)
T 3p5b_L          383 CPDGMLLARDMRS  395 (400)
T ss_dssp             CCTTCEECTTSSS
T ss_pred             CCCCCEECCCCCc
Confidence            9999999988775

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=100.00  E-value=5.5e-51  Score=413.48  Aligned_cols=288  Identities=36%  Similarity=0.689  Sum_probs=262.5

Q ss_pred             CCCCEEEEEecccEEEEEcCCC--ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-eEEEcCCCCCc
Q psy952           14 SIKPWLIFSNKYYVRNMSLDAT--QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-ERVIRHDSHGL   90 (573)
Q Consensus        14 ~~~~~l~~s~~~~I~~i~l~g~--~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~i~~~~~~~p   90 (573)
                      +++|||||++++.|+++++++.  .+++++.++.++.+|+||+.+++|||+|...++|+|++++|+.. +.++..++..|
T Consensus         2 g~~p~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p   81 (318)
T 3sov_A            2 GSAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP   81 (318)
T ss_dssp             --CCEEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred             CCccEEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence            5789999999999999999987  46677788889999999999999999999999999999998753 45666778899


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL  169 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~  169 (573)
                      .|||+||.+++|||+|...++|++++++|..+++++ ..+..|++|||||..|+|||+||+..++|+|+++||+.+++++
T Consensus        82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~  161 (318)
T 3sov_A           82 DGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII  161 (318)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE
T ss_pred             cEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE
Confidence            999999999999999999999999999999988887 6888999999999999999999987789999999999999998


Q ss_pred             ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccC
Q psy952          170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       170 ~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~  249 (573)
                        ...+.+|+||++|+.+++|||+|+..++|++++++|+.+++++.+. +.+|+||+++++.|||+||.+++|.++++.+
T Consensus       162 --~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~glav~~~~lywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          162 --NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYT  238 (318)
T ss_dssp             --CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSC-CSCEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             --ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCC-CCCceEEEEeCCEEEEEecCCCeEEEEECCC
Confidence              6789999999999999999999999999999999999999988755 8999999999999999999999999999999


Q ss_pred             CcceEEEcccCCCceeeeeeecCC------------CcccccccccccCccceee-eccceeecCCCCC
Q psy952          250 GRDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       250 g~~~~~l~~~~~~p~~i~v~~~~~------------~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      |+..++|...+..|++|+|+|+.+            ++|+|+|++.+ +...++| ||.+|.|..|+++
T Consensus       239 G~~~~~i~~~~~~P~~i~v~~~~~q~~~~n~C~~~ng~Cs~~C~~~~-~~~~~~C~C~~g~~l~~d~~~  306 (318)
T 3sov_A          239 GEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSP-VKPFYQCACPTGVKLLENGKT  306 (318)
T ss_dssp             CCSCEEEECCCSSCCCEEEECGGGSCCCCCTTTTTGGGCSSEEEECS-STTSEEEECSTTCCBCTTSSC
T ss_pred             CCceEEEeCCCCCCcEEEEeccccccccccccccCCCCcceEEecCC-CCCCeEEECCCCCEECCCCCC
Confidence            999988888888999999999753            78999999988 3346899 9999999988775

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=100.00  E-value=1.5e-50  Score=422.23  Aligned_cols=296  Identities=38%  Similarity=0.728  Sum_probs=274.2

Q ss_pred             CCC----CCCceeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC
Q psy952            2 PGW----DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST   77 (573)
Q Consensus         2 ~g~----dg~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~   77 (573)
                      |||    ||++|++.. ++++|++++++.|+++++++..++.++..+..|.||+||+.+++|||+|...++|+|++++|+
T Consensus        70 ~g~~l~~d~~~C~~~~-~~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~  148 (386)
T 3v65_B           70 AGYELRPDRRSCKALG-PEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS  148 (386)
T ss_dssp             TTEEECTTSSCEEECS-SCCEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCceEcCCCCeECCcc-ccceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence            676    699999975 589999999999999999998888888899999999999999999999999999999999998


Q ss_pred             cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEE
Q psy952           78 EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIG  156 (573)
Q Consensus        78 ~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~  156 (573)
                      ..+.++..++..|.||||||.+++|||+|...++|++++++|..+++++ ..+..|++|||||..|+|||+|++..++|+
T Consensus       149 ~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~  228 (386)
T 3v65_B          149 NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE  228 (386)
T ss_dssp             CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEE
Confidence            8888888888999999999999999999999999999999999988877 478899999999999999999998668999


Q ss_pred             EEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEec
Q psy952          157 KIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTD  236 (573)
Q Consensus       157 r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd  236 (573)
                      |++++|+.+++++  ...+.+|+|||||+.+++|||+|+..++|++++++|+.+++++... +.+|+||+++++.|||+|
T Consensus       229 r~~~dG~~~~~~~--~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~-~~~P~giav~~~~ly~td  305 (386)
T 3v65_B          229 ASSMDGSGRRIIA--DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTD  305 (386)
T ss_dssp             EEETTSCSCEEEE--CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS-CSSEEEEEEETTEEEEEE
T ss_pred             EEeCCCCCcEEEE--ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC-CCCceEEEEECCEEEEee
Confidence            9999999999998  6889999999999999999999999999999999999998888765 889999999999999999


Q ss_pred             CCCCceEEEeccCCcceEEEcccCCCceeeeeeecCC------------CcccccccccccCccceee-eccceeecCCC
Q psy952          237 WNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGN  303 (573)
Q Consensus       237 ~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~~~------------~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~  303 (573)
                      |.+++|.+++|.+|+.+++|...+..|++|+++|+.+            ++|+|+||+.+   ..++| ||.+|. ..|+
T Consensus       306 ~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~q~~~~n~C~~~ng~C~~lCl~~~---~~~~C~C~~g~~-~~d~  381 (386)
T 3v65_B          306 WHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSG---QNYTCACPTGFR-KINS  381 (386)
T ss_dssp             TTTTEEEEEETTTCCSCEEEECSCSCCCCEEEESGGGSCCCCCTTTTSCTTSSSEEECCS---SSCEEECCTTCB-CSSS
T ss_pred             CCCCeEEEEECCCCcceEEEccCCCCCceEEEEchhcCcCCcCccccCCCCCCceeeeCC---CCCeeECCCCCc-CCCC
Confidence            9999999999999999999988889999999999863            67999999998   47999 999999 7776


Q ss_pred             CC
Q psy952          304 KE  305 (573)
Q Consensus       304 ~~  305 (573)
                      ++
T Consensus       382 ~~  383 (386)
T 3v65_B          382 HA  383 (386)
T ss_dssp             SC
T ss_pred             Cc
Confidence            64

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=4.2e-50  Score=449.84  Aligned_cols=302  Identities=31%  Similarity=0.630  Sum_probs=273.6

Q ss_pred             CCCC----CCCceeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC
Q psy952            1 MPGW----DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS   76 (573)
Q Consensus         1 ~~g~----dg~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g   76 (573)
                      +|||    ++++|++. +..++|++++++.|+++++++..+..++..+..+.||+||+.+++|||+|...++|++++++|
T Consensus       377 ~~Gy~l~~~~~~C~~~-~~~p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g  455 (791)
T 3m0c_C          377 EEGFQLDPHTKACKAV-GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR  455 (791)
T ss_dssp             CSSEECCSSCCCCEET-TSCCEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             CCCCEeCCCCceeeec-ccccccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccC
Confidence            3677    88999997 478899999999999999999888888889999999999999999999999999999999998


Q ss_pred             C----cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCC
Q psy952           77 T----EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNL  151 (573)
Q Consensus        77 ~----~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~  151 (573)
                      .    ..++++..++..|.||||||++++|||+|...++|+|++++|..+++|+ ..+..|++|||||.+|+||||||+.
T Consensus       456 ~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~  535 (791)
T 3m0c_C          456 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT  535 (791)
T ss_dssp             ------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSS
T ss_pred             CCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCC
Confidence            4    4566777788999999999999999999999999999999999998888 5788899999999999999999987


Q ss_pred             cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-CccceeEEEeeeCC
Q psy952          152 QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFED  230 (573)
Q Consensus       152 ~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~~~~~p~~ia~~~~  230 (573)
                      .++|+|++|+|+.+++|+  ...+.+|+|||||+.+++|||+|++.++|++++++|..+++|+.. ..+++|++|+++++
T Consensus       536 ~~~I~~~~~dG~~~~~lv--~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~  613 (791)
T 3m0c_C          536 PAKIKKGGLNGVDIYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED  613 (791)
T ss_dssp             SCEEEEEETTSCCEEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT
T ss_pred             CCeEEEEecCCCceEEEE--eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC
Confidence            789999999999999999  788999999999999999999999999999999999999988864 23889999999999


Q ss_pred             eEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeeecCC---------------Cccccccccccc---Cccceee
Q psy952          231 HIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK---------------GTTRHAWLTAHR---GSTTVAD  292 (573)
Q Consensus       231 ~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~~~---------------~~Cs~lCl~~~~---~~~~~~C  292 (573)
                      +||||||.+++|++++|.+|+.+.+|...+..|++|+|+|+++               ++|+||||+.+.   .+..|+|
T Consensus       614 ~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~Qp~~~N~C~~~~~~ng~CshlCl~~p~~~~~~~~~~C  693 (791)
T 3m0c_C          614 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTC  693 (791)
T ss_dssp             EEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGGSCCCCCTTTSSSSGGGGCSSEEEECCCCSTTCCSEEE
T ss_pred             EEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeeccccCCCCCCcccccCCCCcCcCeeecCCCCcCCCCCCcee
Confidence            9999999999999999999999999988899999999999763               589999999872   1236899


Q ss_pred             -eccceeecCCCCC
Q psy952          293 -MIRSVYLGSGNKE  305 (573)
Q Consensus       293 -Cp~~~~l~~d~~~  305 (573)
                       ||.+|.|..|+++
T Consensus       694 ~Cp~g~~L~~d~~t  707 (791)
T 3m0c_C          694 ACPDGMLLARDMRS  707 (791)
T ss_dssp             ECCTTCEECTTSSC
T ss_pred             ECCCCCEECCCCCc
Confidence             9999999988775

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=5e-50  Score=440.81  Aligned_cols=292  Identities=30%  Similarity=0.603  Sum_probs=268.6

Q ss_pred             CCCceeeCCCCCCEEEEEecccEEEEEcCCCce---eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE
Q psy952            5 DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQY---SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER   81 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~---~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~   81 (573)
                      ||++|++  ++++||+|++++.|++++++...+   .+++.++.++.+|+||+.+++|||+|...++|+|+.++|+..++
T Consensus       308 d~~~C~~--~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~  385 (619)
T 3s94_A          308 NGKTCKD--GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQF  385 (619)
T ss_dssp             TSSCBCS--SCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cCcccCC--CCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEE
Confidence            8999996  468999999999999999987643   34557788999999999999999999999999999999988888


Q ss_pred             EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952           82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM  160 (573)
Q Consensus        82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l  160 (573)
                      ++..++..|.||||||.+++|||+|...++|++++++|+.+++|+ ..+..|++|||||.+|+||||||+..++|+|+.|
T Consensus       386 v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~  465 (619)
T 3s94_A          386 VVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAAL  465 (619)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEcc
Confidence            888888999999999999999999999999999999999988887 5889999999999999999999987789999999


Q ss_pred             cCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCC
Q psy952          161 DGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTK  240 (573)
Q Consensus       161 dG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~  240 (573)
                      ||+.+++++  ...+.+|+|||||+.+++|||+|+..++|++++++|+.+++++... +.+|+||++++++||||||.++
T Consensus       466 dG~~~~~l~--~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-l~~P~glav~~~~ly~tD~~~~  542 (619)
T 3s94_A          466 DGSDRVVLV--NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK-IPHIFGFTLLGDYVYWTDWQRR  542 (619)
T ss_dssp             TSCSCEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC-CCSSCCEEEETTEEEEECTTSS
T ss_pred             CCCccEEEE--eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC-CCCcEEEEEECCEEEEeecCCC
Confidence            999999999  6789999999999999999999999999999999999999888765 8999999999999999999999


Q ss_pred             ceEEEeccCCcceEEEcccCCCceeeeeeecCC-----------CcccccccccccCccceee-eccceeecCCCCC
Q psy952          241 SINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK-----------GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       241 ~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~~~-----------~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      +|++++|.+| ..+++...+..|++|+++|+..           ++|+|+|++.+   ..++| ||.||.|..|+++
T Consensus       543 ~I~~~~k~~g-~~~~~~~~~~~~~~i~~~~~~~~~~~~~C~~~ng~C~~~C~~~~---~~~~C~C~~g~~l~~d~~~  615 (619)
T 3s94_A          543 SIERVHKRSA-EREVIIDQLPDLMGLKATNVHRVIGSNPCAEENGGCSHLCLYRP---QGLRCACPIGFELISDMKT  615 (619)
T ss_dssp             CEEEEESSSC-CEEEEECSCCCEEEEEEEESSCCCCCCGGGSGGGGCSSEEEEET---TEEEEECCTTCEECSSTTC
T ss_pred             eEEEEEcCCC-ceEEEecCCCCCceeeecccccccccccCCCCCCChhHhhccCC---CCeEEECCCCCEECCCCCc
Confidence            9999999999 6677777788999999998752           79999999998   45999 9999999988764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=2.9e-49  Score=435.11  Aligned_cols=293  Identities=25%  Similarity=0.411  Sum_probs=264.8

Q ss_pred             CCCceeeCCCCCCEEEEEecccEEEEEcCCCc---eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE
Q psy952            5 DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQ---YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER   81 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~---~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~   81 (573)
                      |+++|++   +.+||+|++++.|+++.+++..   ..+++.++.++.+|+||+.+++|||+|...++|+|+.++|+..++
T Consensus       300 d~~~C~~---~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~  376 (628)
T 4a0p_A          300 DNRTCSA---PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFT  376 (628)
T ss_dssp             TSSCEEC---CSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cCCcCcc---ccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceE
Confidence            8999996   5689999999999999998653   345667889999999999999999999999999999999988776


Q ss_pred             EEcC------CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcC-
Q psy952           82 VIRH------DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQA-  153 (573)
Q Consensus        82 i~~~------~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~-  153 (573)
                      ++..      ++..|.||||||++++|||+|...++|++++++|+.+++|+ ..+..|++|||||.+|+||||||+..+ 
T Consensus       377 v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~  456 (628)
T 4a0p_A          377 VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSP  456 (628)
T ss_dssp             EEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEE
T ss_pred             EEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCC
Confidence            6654      56799999999999999999999999999999999988887 478899999999999999999998765 


Q ss_pred             eEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEE
Q psy952          154 YIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIY  233 (573)
Q Consensus       154 ~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~ly  233 (573)
                      +|+|++|||+.+++|+  .+.+.+|+|||||+.+++|||+|+..++|++++++|+.++++.... +.+|+||++++++||
T Consensus       457 ~I~r~~~dG~~~~~l~--~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~-~~~P~glav~~~~ly  533 (628)
T 4a0p_A          457 KIERAALDGTEREVLF--FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSN-ILQPVGLTVFENWLY  533 (628)
T ss_dssp             EEEEEETTSCSCEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS-CSCEEEEEEETTEEE
T ss_pred             eEEEEeCCCCCcEEEE--eccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCC-CCCcEEEEEECCEEE
Confidence            8999999999999999  6789999999999999999999999999999999999999988755 889999999999999


Q ss_pred             EecCCCCceEEEeccCCcceEEEcccCCCceeeeeeecCC-------------CcccccccccccCccceee-eccceee
Q psy952          234 WTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK-------------GTTRHAWLTAHRGSTTVAD-MIRSVYL  299 (573)
Q Consensus       234 wtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~~~-------------~~Cs~lCl~~~~~~~~~~C-Cp~~~~l  299 (573)
                      ||||.+++|++++|.+|+..++|...+..|++|+++|+..             ++|+|+|++.+.  ..++| ||.+|.|
T Consensus       534 ~tD~~~~~i~~~~k~~G~~~~~i~~~~~~~~~i~~~~~~~~~~~~~n~c~~~ng~C~~~C~~~~~--~~~~C~C~~g~~l  611 (628)
T 4a0p_A          534 WIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQDNGGCSHICLVKGD--GTTRCSCPMHLVL  611 (628)
T ss_dssp             EEETTTTEEEEEETTSSSCCEEEECCCTTEEEEEEECCCCHHHHHHSTTTTGGGGCSSEEEECTT--SCEEEECCTTEEE
T ss_pred             EEECCCCeEEEEECcCCCCcEEEeccCCCCcceEEEeecccCccccccCCCCCCCcchhcccCCC--CCeeeeCCCCCEE
Confidence            9999999999999999999999988888899999887531             899999999872  35799 9999999


Q ss_pred             cCCCCC
Q psy952          300 GSGNKE  305 (573)
Q Consensus       300 ~~d~~~  305 (573)
                      .+|+++
T Consensus       612 ~~d~~~  617 (628)
T 4a0p_A          612 LQDELS  617 (628)
T ss_dssp             CTTSSC
T ss_pred             CCCCCc
Confidence            988775

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=100.00  E-value=8e-48  Score=390.85  Aligned_cols=288  Identities=32%  Similarity=0.639  Sum_probs=256.8

Q ss_pred             CCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC----CcceEEEcCCCCCcc
Q psy952           16 KPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS----TEKERVIRHDSHGLE   91 (573)
Q Consensus        16 ~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g----~~~~~i~~~~~~~p~   91 (573)
                      +|||||++++.|+++++++..+..++..+.+|.||+||+.+++|||+|...++|++++++|    +..+.++..++..|.
T Consensus         1 ~~~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            1 IAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             CCEEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             CCEEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            4799999999999999999888777888999999999999999999999999999999998    555666766788999


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      |||+||.+++|||+|...++|.+++++|..+++++. .+..|++|||||..|+|||++++..++|+|+++||+.+++++ 
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~-  159 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-  159 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE-
Confidence            999999999999999999999999999998888774 788999999999999999999875589999999999999888 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-CccceeEEEeeeCCeEEEecCCCCceEEEeccC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFEDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~  249 (573)
                       ...+.+|+||++|+.+++|||+|+..++|++++++|+.+++++.. ..+.+|+||++++++|||+||.+++|.++++.+
T Consensus       160 -~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~  238 (316)
T 1ijq_A          160 -TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT  238 (316)
T ss_dssp             -CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             -ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCC
Confidence             678999999999999999999999999999999999999888763 237899999999999999999999999999999


Q ss_pred             CcceEEEcccCCCceeeeeeecCC---------------Cccccccccccc---Cccceee-eccceeecCCCCC
Q psy952          250 GRDYRVLRNTTHRPYDIHVYHPLK---------------GTTRHAWLTAHR---GSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       250 g~~~~~l~~~~~~p~~i~v~~~~~---------------~~Cs~lCl~~~~---~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      |+..+++...+..|++|+|+|+.+               ++|+|+|++.+.   ....++| ||.+|.|..|+++
T Consensus       239 g~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~~~~ng~Cs~~C~~~p~~~~~~~~~~C~C~~g~~l~~d~~~  313 (316)
T 1ijq_A          239 GSDVNLLAENLLSPEDMVLFHNLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS  313 (316)
T ss_dssp             CCCCEEEECSCSCCCCEEEESGGGSCCCCCTTSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSC
T ss_pred             CcceEEEecCCCCceEEEEeccccCCcccccccccccCCCCcCcccCCCccccCCCCCeEeeCCCCCEECCCCCc
Confidence            999988888788999999998642               379999998862   1246899 9999999988774

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=100.00  E-value=4.1e-48  Score=425.95  Aligned_cols=285  Identities=31%  Similarity=0.639  Sum_probs=262.3

Q ss_pred             CCCCEEEEEecccEEEEEcCCCcee--ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952           14 SIKPWLIFSNKYYVRNMSLDATQYS--LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLE   91 (573)
Q Consensus        14 ~~~~~l~~s~~~~I~~i~l~g~~~~--~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~   91 (573)
                      .+++||+|++++.|++++|++....  +++.++.+|.||+||+.+++|||+|...++|+|++++|+..++++..++..|.
T Consensus         4 ~p~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            4 VPEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE   83 (628)
T ss_dssp             -CCCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             CCCcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence            5789999999999999999987643  34567889999999999999999999999999999999988888888888999


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      ||||||.+++|||+|...++|++++++|..+++|+ ..+..|++|||||.+|+||||||+..++|+|++|||+.+++++ 
T Consensus        84 GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-  162 (628)
T 4a0p_A           84 GMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV-  162 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred             eEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence            99999999999999999999999999999988887 6888999999999999999999987889999999999999998 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g  250 (573)
                        +.+.+|+||+||+.+++|||+|...++|++++++|..++++...  +.+|+||++++++||||||.+++|.+++|.+|
T Consensus       163 --~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~--l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          163 --PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADD--LPHPFGLTQYQDYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             --CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC--CSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             --CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeecc--CCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence              58999999999999999999999999999999999999766554  78999999999999999999999999999999


Q ss_pred             cceEEEcccCCCceeeeeeecCC-----------CcccccccccccCccceee-eccceeecCCCCC
Q psy952          251 RDYRVLRNTTHRPYDIHVYHPLK-----------GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       251 ~~~~~l~~~~~~p~~i~v~~~~~-----------~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      +.+++|...+..|++|+|+|+.+           ++|+|+|++.+  ..+|+| ||.+|.|..|+++
T Consensus       239 ~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~--~~~~~C~C~~g~~l~~d~~~  303 (628)
T 4a0p_A          239 QNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVP--VGGFVCGCPAHYSLNADNRT  303 (628)
T ss_dssp             CSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEET--TTEEEEECSTTCEECTTSSC
T ss_pred             CceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCC--CCCeeEEcCCCcEecccCCc
Confidence            99999988888999999999853           78999999987  246999 9999999888765

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=100.00  E-value=1e-47  Score=422.56  Aligned_cols=287  Identities=36%  Similarity=0.688  Sum_probs=248.4

Q ss_pred             CCCEEEEEecccEEEEEcCCC--ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-ceEEEcCCCCCcc
Q psy952           15 IKPWLIFSNKYYVRNMSLDAT--QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-KERVIRHDSHGLE   91 (573)
Q Consensus        15 ~~~~l~~s~~~~I~~i~l~g~--~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~i~~~~~~~p~   91 (573)
                      ..|+|++++++.|+++++++.  ++++++.++.+|.||+||+.+++|||+|...++|+|+.++|+. .++++..++..|.
T Consensus         8 ~~~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~   87 (619)
T 3s94_A            8 HAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD   87 (619)
T ss_dssp             --CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE
T ss_pred             cCceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC
Confidence            468999999999999999976  4677888999999999999999999999999999999999875 4667888889999


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      ||||||.+++|||+|...++|++++++|..+++|+ ..+..|++|||||.+|+||||||+..++|+|+.|||+.+++++ 
T Consensus        88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-  166 (619)
T 3s94_A           88 GLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-  166 (619)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred             eEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-
Confidence            99999999999999999999999999999988888 6889999999999999999999987889999999999999999 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g  250 (573)
                       ...+.+|+|||||+.+++|||+|...++|++++++|..+++++.+. +.+|+||++++++||||||.+++|.+++|.+|
T Consensus       167 -~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~-~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg  244 (619)
T 3s94_A          167 -NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTG  244 (619)
T ss_dssp             -CSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC----------CCCEEESSSEEEEECTTTCSEEEEESSSC
T ss_pred             -eCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC-CCCceEEEEeCCEEEEecCCCCEEEEEECCCC
Confidence             6789999999999999999999999999999999999998888755 88999999999999999999999999999999


Q ss_pred             cceEEEcccCCCceeeeeeecCC------------CcccccccccccCccceee-eccceeecCCCCC
Q psy952          251 RDYRVLRNTTHRPYDIHVYHPLK------------GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       251 ~~~~~l~~~~~~p~~i~v~~~~~------------~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      +..+++...+..|++|+|+|+.+            ++|+|+|++.+ ....++| ||.||.+..|+++
T Consensus       245 ~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~-~~~~~~C~C~~g~~l~~d~~~  311 (619)
T 3s94_A          245 EGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSP-VKPFYQCACPTGVKLLENGKT  311 (619)
T ss_dssp             CCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECS-STTSEEEECCTTCCBCTTSSC
T ss_pred             cccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCC-CCCCceEeCCchheecccCcc
Confidence            99998888888999999999852            78999999988 3346999 9999999888765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=3.9e-46  Score=416.14  Aligned_cols=302  Identities=31%  Similarity=0.632  Sum_probs=266.7

Q ss_pred             CCCC----CCCceeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC
Q psy952            1 MPGW----DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS   76 (573)
Q Consensus         1 ~~g~----dg~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g   76 (573)
                      .|||    ++++|++. +..++||+++++.|+++++++..+..++..+.+|.+|+||+.+++|||+|...++|+++++++
T Consensus       359 ~~G~~~~~~~~~C~~~-~~~~~ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g  437 (699)
T 1n7d_A          359 EEGFQLDPHTKACKAV-GSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR  437 (699)
T ss_dssp             CSSCBCCSSCCCCBCC-SSCCCBCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCC
T ss_pred             ecccccCCCCCccccc-ccceeEEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCC
Confidence            3676    68999987 578999999999999999999888888888899999999999999999999999999999987


Q ss_pred             ----CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-CCCCcceEEEeCCCceEEEEecCC
Q psy952           77 ----TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-AIQDPRGITLHPGIGYVYFSSWNL  151 (573)
Q Consensus        77 ----~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-~~~~P~~Iavdp~~g~LYwtd~~~  151 (573)
                          +....++..++..|.||||||.+++|||+|...++|.+++++|..+++++. .+..|++|||||..|+||||+++.
T Consensus       438 ~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~  517 (699)
T 1n7d_A          438 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT  517 (699)
T ss_dssp             CCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSS
T ss_pred             CCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCC
Confidence                455555656778999999999999999999999999999999999888874 678899999999999999999876


Q ss_pred             cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-CccceeEEEeeeCC
Q psy952          152 QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFED  230 (573)
Q Consensus       152 ~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~~~~~p~~ia~~~~  230 (573)
                      .++|+|++|+|+.+++++  ...+.+|+|||||+.+++|||+|+..++|++++++|..+++++.. ..+.+|+||+++++
T Consensus       518 ~~~I~~~~~dG~~~~~l~--~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~  595 (699)
T 1n7d_A          518 PAKIKKGGLNGVDIYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED  595 (699)
T ss_dssp             SCCEEBCCSSSCCCCEES--CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT
T ss_pred             CCeEEEEeCCCCCeeEEE--eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC
Confidence            689999999999988887  678999999999999999999999999999999999999888753 23789999999999


Q ss_pred             eEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeeecCC---------------Cccccccccccc---Cccceee
Q psy952          231 HIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK---------------GTTRHAWLTAHR---GSTTVAD  292 (573)
Q Consensus       231 ~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~~~---------------~~Cs~lCl~~~~---~~~~~~C  292 (573)
                      +|||+||.+++|.++++.+|+.+++|...+..|++|+|+|+.+               ++|+||||++|.   ....|+|
T Consensus       596 ~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~~~~~qp~~~n~C~~~~~~ng~Cs~lCl~~p~~~~~~~~~~C  675 (699)
T 1n7d_A          596 KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVNWCERTTLSNGGCQYLCLPAPQINPHSPKFTC  675 (699)
T ss_dssp             EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBCSSSSSCCSCCSSCSSSCSSCSCTTCCBCCCCCTTCSCSCBC
T ss_pred             EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEeCcccCCCCCCCccccCCCCCCCCcccCcCcccCCCCCCcEE
Confidence            9999999999999999999999888877788999999998753               479999998762   2346899


Q ss_pred             -eccceeecCCCCC
Q psy952          293 -MIRSVYLGSGNKE  305 (573)
Q Consensus       293 -Cp~~~~l~~d~~~  305 (573)
                       ||.+|.|..|+++
T Consensus       676 ~Cp~g~~l~~d~~~  689 (699)
T 1n7d_A          676 ACPDGMLLARDMRS  689 (699)
T ss_dssp             CCCSSCEECSSTTC
T ss_pred             ECcCCCEECCCCCc
Confidence             9999999988765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=1.1e-37  Score=348.01  Aligned_cols=231  Identities=37%  Similarity=0.799  Sum_probs=157.4

Q ss_pred             CcccCCccccCCCeeeecceeeCCcCCCCCCCCCCC-CCCCccccCCCCCccCCccccCCCCccccCCCCceecCC-Ccc
Q psy952          307 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPL-HCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLED-GKA  384 (573)
Q Consensus       307 ~~C~~~~~~C~~g~Ci~~~~~cd~~~~c~d~sde~~-~c~~~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~-~~c  384 (573)
                      ..|.+.+|+|.+|+||+..|+|||..||.|+|||.. .|....|..                      .+|+|.++ ++|
T Consensus         4 ~~C~~~~f~C~~g~ci~~~~~Cdg~~dC~d~sDE~~~~C~~~~C~~----------------------~~f~C~~~~~~C   61 (699)
T 1n7d_A            4 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKS----------------------GDFSCGGRVNRC   61 (699)
T ss_dssp             ----------------------------------------CCSCSS----------------------SSCCCCC--CCC
T ss_pred             CCCCccceeCCCCcEEcHHhcCCCcccCCCCCCCCccccCCcCCCC----------------------CccCCCCCCCce
Confidence            468889999999999999999999999999999972 254433433                      56777664 479


Q ss_pred             cccccccCCCCC-CCCCCCCCCCCCCCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCC
Q psy952          385 CTDIDECIEQPG-VCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKT  463 (573)
Q Consensus       385 ~~~~~~C~~~~~-~~~~~~~~C~~~~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~  463 (573)
                      |+..|.||+..| ...+||..|....|.+. +|+|.+|+||+..|+||+..||.|+|||..  |....|.+++|+|.   
T Consensus        62 i~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~-~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~--C~~~~C~~~~f~C~---  135 (699)
T 1n7d_A           62 IPQFWRCDGQVDCDNGSDEQGCPPKTCSQD-EFRCHDGKCISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCN---  135 (699)
T ss_dssp             CCSSSTTSSSCCC-CCCTTTSCSSCCCCSS-CCCSSCC----CCCTTCSSCCSSSSCSSSS--CCCCCCCSSCCCCS---
T ss_pred             eCcceecCCcccCCCCcccCcccccccccC-cEEcCCCCEecHHHcCCCcCcCCCCCccCC--cCccccCccccCCC---
Confidence            999999999999 55566788998889988 999999999999999999999999999987  88888999999997   


Q ss_pred             CccccCCccccCCCCCCCCCCCCCCCCCC----------CCC------------CC-CccCCCCCCCCCCCCcccccCCC
Q psy952          464 NYRCIPKWLFCDGKDDCRDGSDELPQNCP----------LES------------LG-SVCNGVNDCKDNITSDETHARCP  520 (573)
Q Consensus       464 ~~~c~~~~~~Cdg~~dC~d~sDe~~~~C~----------~c~------------~~-~~Cd~~~dC~dg~~~de~~~~C~  520 (573)
                      +++|||..|+|||..||.|||||.+.+|.          .|.            +. .+|||..||.||  |||.+  | 
T Consensus       136 ~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dg--sDE~~--C-  210 (699)
T 1n7d_A          136 SSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDK--SDEEN--C-  210 (699)
T ss_dssp             SSCCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSSCCCSTTCTTSSSCCSTTS--CSSCS--C-
T ss_pred             CCcccchhcccCCCCcCCCCcccccccCCCcccccCCCCCCCCcceecCCCceEechhccCCCCCCCCC--ccccc--C-
Confidence            68999999999999999999999555552          232            22 289999999999  99998  9 


Q ss_pred             CCCCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCCC-CCC-CCCCCC
Q psy952          521 SNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ-RTC-PQNSFR  573 (573)
Q Consensus       521 ~~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~-~~c-~~~~f~  573 (573)
                      ....|.+++|+|.++ .||+.+|+|||..||.|+|||.  +|.. ..| .+.+|+
T Consensus       211 ~~~~C~~~~f~C~~g-~Ci~~~~~Cdg~~dC~dgsde~--~C~~~~~C~~~~~~~  262 (699)
T 1n7d_A          211 AVATCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEV--GCVNVTLCEGPNKFK  262 (699)
T ss_dssp             CCCCCCSSEEESSSS-CEEETTCCSSSCCCSSSSCSSS--STTCCCCCCSTTCCC
T ss_pred             CCcccCCCcEecCCC-ceeeeecccCCCCCCCCCCccC--CCCCCCcccCCCcee
Confidence            456899999999998 9999999999999999999998  8864 346 345553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=100.00  E-value=1e-33  Score=279.66  Aligned_cols=251  Identities=27%  Similarity=0.550  Sum_probs=219.1

Q ss_pred             CEEEEEecccEEEEEcCCCcee------ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           17 PWLIFSNKYYVRNMSLDATQYS------LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l~g~~~~------~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      ++|+|++.+.|+++++++....      ++......|.+|++|+.+++|||+|...++|++++++|.....++..++..|
T Consensus         2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p   81 (267)
T 1npe_A            2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (267)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence            6899999999999999987542      2222356789999999999999999999999999999987777776677899


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRI  168 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l  168 (573)
                      .+|++|+.+++|||+|...++|.+++++|...++++ ..+..|++|++||..++|||++++. ..+|+++.++|...+++
T Consensus        82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~  161 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             cEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE
Confidence            999999999999999999999999999998877766 4668899999999999999999763 57999999999988888


Q ss_pred             EecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEecc
Q psy952          169 LTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       169 ~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~  248 (573)
                      .  ...+..|+||++|+.+++|||+|...++|.+++++|..++.++..  +.+|.+|++++++|||+++.+++|.++++.
T Consensus       162 ~--~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~--~~~P~gi~~d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          162 A--QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             E--CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC--CCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             E--ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecC--CCCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence            7  567889999999998999999999999999999999887777664  679999999999999999999999999988


Q ss_pred             CCcceEEEccc-CCCceeeeeeec
Q psy952          249 NGRDYRVLRNT-THRPYDIHVYHP  271 (573)
Q Consensus       249 ~g~~~~~l~~~-~~~p~~i~v~~~  271 (573)
                      +|+....+..+ ...|++|++..+
T Consensus       238 ~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          238 ISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             TTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CCCceEEEccccccccceeeecCc
Confidence            89888777654 347999988664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=1.5e-36  Score=340.07  Aligned_cols=250  Identities=34%  Similarity=0.718  Sum_probs=36.2

Q ss_pred             CCcccCCccccCCCeeeecceeeCCcCCCCCCCCCCC-CCCCccccCCCCCccCC----------------ccccCCCCc
Q psy952          306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPL-HCNVDECAKVETNQCGH----------------KCVDTLTGY  368 (573)
Q Consensus       306 ~~~C~~~~~~C~~g~Ci~~~~~cd~~~~c~d~sde~~-~c~~~~C~~~~~~~C~~----------------~C~~~~~~~  368 (573)
                      ...|..++|+|.+|+||+..|+|||..||.|+|||.. .|....|.. .+|+|.+                .|.++++|.
T Consensus        21 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~-~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~   99 (791)
T 3m0c_C           21 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKS-GDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ   99 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCcCcCccCCCCCCEEehhhcCCCCccCCCCCcccccccccCccCc-CccccCCCCCCEeeccccCCCCcCcCCCcccC
Confidence            5679999999999999999999999999999999972 365555655 5555543                468899999


Q ss_pred             ccc---CC-CCceecCCCcccccccccCCCCC-CCCCCCCCCCCCCCCCCCceecCCCcccCCCcccCCCCCCCCCCCCC
Q psy952          369 YCE---CN-TGYKLLEDGKACTDIDECIEQPG-VCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEP  443 (573)
Q Consensus       369 ~C~---C~-~~f~c~~~~~c~~~~~~C~~~~~-~~~~~~~~C~~~~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~  443 (573)
                      .|.   |. .+|+|.++ +||+..|.||+..| ...+||..|....|.+. +|+|.+|.|||..|+||+..||.|+|||.
T Consensus       100 ~C~~~~C~~~~f~C~~g-~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~-~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~  177 (791)
T 3m0c_C          100 GCPPKTCSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPA-SFQCNSSTCIPQLWACDNDPDCEDGSDEW  177 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCccccCCeEECCCC-CEECHHHcCCCcccCCCCcccccccccccccc-eeccCCCccccccccCCCCCcCCCCCCcc
Confidence            995   87 79999876 59999999999999 55566788998899998 99999999999999999999999999997


Q ss_pred             CCccC--------CcCCCCCCcCCCCCCCccccCCccccCCCCCCCCCCCCCCCCCC--CCCC------------C-Ccc
Q psy952          444 AYMCR--------QRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP--LESL------------G-SVC  500 (573)
Q Consensus       444 ~~~C~--------~~~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d~sDe~~~~C~--~c~~------------~-~~C  500 (573)
                      ...|.        ...|...+|+|.   +++||+..|+|||..||.|+|||  .+|.  .|.+            . .+|
T Consensus       178 ~~~C~~~~~~~~~~~~C~~~~f~C~---~g~Ci~~~~~CDg~~dC~dgsDE--~~C~~~~C~~~~f~C~~g~Ci~~~~~C  252 (791)
T 3m0c_C          178 PQRCRGLYVFQGDSSPCSAFEFHCL---SGECIHSSWRCDGGPDCKDKSDE--ENCAVATCRPDEFQCSDGNCIHGSRQC  252 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCCccccCCCCCCCCCCccccc---CCceeccccccCCCCCCCCCCCC--CCccccccCCCcceecCCceEecceec
Confidence            54573        346888999998   68999999999999999999999  6663  3332            2 289


Q ss_pred             CCCCCCCCCCCCcccccCCCCCCCcC-CCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCCCCCCC
Q psy952          501 NGVNDCKDNITSDETHARCPSNITCP-PHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCP  568 (573)
Q Consensus       501 d~~~dC~dg~~~de~~~~C~~~~~C~-~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~~~c~  568 (573)
                      |+..||.|+  +||.+  |.....|. +.+|.|.+| .||+..++||+..||.|||||....|....|.
T Consensus       253 dg~~dC~dg--sDE~~--C~~~~~C~~~~~~~C~~G-~Ci~~~~~Cd~~~dC~dgsDe~~~~C~~~~C~  316 (791)
T 3m0c_C          253 DREYDCKDM--SDEVG--CVNVTLCEGPNKFKCHSG-ECITLDKVCNMARDCRDWSDEPIKECGTNECL  316 (791)
T ss_dssp             ------------------------CCSTTCCCCTTS-CCCCSSCCSCSSCCSSSSCSCCCTTBSCCSTT
T ss_pred             CChhccccc--cccCc--ccccccccCCCccccCCC-cccccccccCCccccccccCcccccccccccc
Confidence            999999999  99998  86556674 789999998 99999999999999999999974346555554

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.96  E-value=8.9e-28  Score=250.03  Aligned_cols=207  Identities=20%  Similarity=0.367  Sum_probs=180.9

Q ss_pred             CCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcce
Q psy952           56 ENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRG  134 (573)
Q Consensus        56 ~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~  134 (573)
                      ...|++++.  ..|+++++++...+.++ .++..|.||++|+..++|||+|...++|.+++++|...++++ .++..|.|
T Consensus        87 ~~~l~~~~~--~~I~~i~~~~~~~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g  163 (386)
T 3v65_B           87 EPVLLFANR--IDIRQVLPHRSEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG  163 (386)
T ss_dssp             CCEEEEECB--SCEEEECTTSCCCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCC
T ss_pred             cceeEeecC--ccceeeccCCCcEEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccE
Confidence            667888764  57999999987776555 467899999999999999999999999999999998876665 57889999


Q ss_pred             EEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC-CeEEEEeCCCCcEEEE
Q psy952          135 ITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL-DYIASVDLDGKHKHIV  213 (573)
Q Consensus       135 Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~l  213 (573)
                      ||||+..+.|||+|++ ..+|++++++|..+++++  ...+..|+||++|+.+++|||+|+.. ++|++++++|+.++++
T Consensus       164 lavd~~~g~lY~~d~~-~~~I~~~~~dg~~~~~l~--~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  240 (386)
T 3v65_B          164 LAVDWVHDKLYWTDSG-TSRIEVANLDGAHRKVLL--WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII  240 (386)
T ss_dssp             EEEETTTTEEEEEETT-TTEEEECBTTSCSCEEEE--CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             EEEEeCCCeEEEEcCC-CCeEEEEeCCCCceEEee--cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence            9999999999999975 579999999999999988  68899999999999999999999998 9999999999999888


Q ss_pred             EeCCccceeEEEeee--CCeEEEecCCCCceEEEeccCCcceEE-EcccCCCceeeeeee
Q psy952          214 ISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNGRDYRV-LRNTTHRPYDIHVYH  270 (573)
Q Consensus       214 ~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~~g~~~~~-l~~~~~~p~~i~v~~  270 (573)
                      +... +..|.||++.  +++|||+|+.+++|++++ .+|..+++ +...+..|++|+++.
T Consensus       241 ~~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d-~dG~~~~~~~~~~~~~P~giav~~  298 (386)
T 3v65_B          241 ADTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERAN-LDGSHRKAVISQGLPHPFAITVFE  298 (386)
T ss_dssp             ECSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEEC-TTSCSCEEEECSSCSSEEEEEEET
T ss_pred             EECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEe-CCCCeeEEEEECCCCCceEEEEEC
Confidence            8755 7899999995  789999999999999998 46666554 455678999999854

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.96  E-value=4.7e-28  Score=248.66  Aligned_cols=208  Identities=17%  Similarity=0.369  Sum_probs=185.3

Q ss_pred             CCCEEEEEe--cccEEEEEcCCCceee-cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952           15 IKPWLIFSN--KYYVRNMSLDATQYSL-VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLE   91 (573)
Q Consensus        15 ~~~~l~~s~--~~~I~~i~l~g~~~~~-~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~   91 (573)
                      ....|++++  .+.|++++++|..... +..++..|.||++|+.+++|||+|...++|++++++|...++++..++..|.
T Consensus        83 ~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~  162 (349)
T 3v64_C           83 RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR  162 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEE
T ss_pred             cccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcc
Confidence            456788887  5789999999876544 4456788999999999999999999999999999999888888877889999


Q ss_pred             eeEEeecCCcEEEEeCCC-CeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE
Q psy952           92 GLAVDWVGRKLYWLDRHS-KQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL  169 (573)
Q Consensus        92 glavD~~~~~LY~td~~~-~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~  169 (573)
                      +||+|+.++.|||+|... ++|++++++|..+++++ ..+..|+||||||..++|||+|++ ..+|++++++|+.+++++
T Consensus       163 ~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~-~~~I~~~~~dG~~~~~~~  241 (349)
T 3v64_C          163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK-HHVIERANLDGSHRKAVI  241 (349)
T ss_dssp             EEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEE
T ss_pred             eEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECC-CCEEEEEeCCCCceEEEE
Confidence            999999999999999987 99999999999988877 478889999999999999999975 679999999999999888


Q ss_pred             ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEe-CCCCcEEEEEeCCccceeEEEeeeC
Q psy952          170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVD-LDGKHKHIVISGQKVPHVFALTLFE  229 (573)
Q Consensus       170 ~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~l~~~~~~~~p~~ia~~~  229 (573)
                        ...+.+|.||+++  +++|||+|+..++|.+++ .+|..+++|...  +..|++|+++.
T Consensus       242 --~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~--~~~p~gi~v~~  296 (349)
T 3v64_C          242 --SQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTGKNQEIIRNK--LHFPMDIHTLH  296 (349)
T ss_dssp             --CSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEECS--CSCCCCEEEEC
T ss_pred             --eCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCCCccEEeccC--CCCCceEEEEc
Confidence              6779999999995  789999999999999999 789988888765  68999999865

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.96  E-value=8.4e-28  Score=243.20  Aligned_cols=208  Identities=20%  Similarity=0.354  Sum_probs=183.3

Q ss_pred             CCEEEEEe--cccEEEEEcCCCc--eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQ--YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLE   91 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~--~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~   91 (573)
                      +..|++++  .+.|+++++++..  ..++..++..|.||++|+.++.|||+|...++|.+++++|...++++...+..|.
T Consensus        46 ~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~  125 (318)
T 3sov_A           46 HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPR  125 (318)
T ss_dssp             GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred             CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCcc
Confidence            35778886  4689999998874  2445567788999999999999999999999999999999888888877889999


Q ss_pred             eeEEeecCCcEEEEeCC-CCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE
Q psy952           92 GLAVDWVGRKLYWLDRH-SKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL  169 (573)
Q Consensus        92 glavD~~~~~LY~td~~-~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~  169 (573)
                      |||+|+.+++|||+|.. .++|++++++|+.+++++ ..+..|+|||||+..+.|||+|+. ..+|++++++|+.+++++
T Consensus       126 giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~-~~~I~~~d~dG~~~~~~~  204 (318)
T 3sov_A          126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAK-LNFIHKSNLDGTNRQAVV  204 (318)
T ss_dssp             EEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEE
T ss_pred             EEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECC-CCEEEEEcCCCCceEEEe
Confidence            99999999999999975 689999999999988877 578899999999999999999965 679999999999999998


Q ss_pred             ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC-CCCcEEEEEeCCccceeEEEeeeCC
Q psy952          170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL-DGKHKHIVISGQKVPHVFALTLFED  230 (573)
Q Consensus       170 ~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~-dG~~~~~l~~~~~~~~p~~ia~~~~  230 (573)
                        ...+..|.||+++  ++.|||+|+..++|.++++ +|..+++|...  +.+|++|+++..
T Consensus       205 --~~~~~~P~glav~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~--~~~P~~i~v~~~  260 (318)
T 3sov_A          205 --KGSLPHPFALTLF--EDILYWTDWSTHSILACNKYTGEGLREIHSD--IFSPMDIHAFSQ  260 (318)
T ss_dssp             --CSCCSCEEEEEEE--TTEEEEEETTTTEEEEEETTTCCSCEEEECC--CSSCCCEEEECG
T ss_pred             --cCCCCCceEEEEe--CCEEEEEecCCCeEEEEECCCCCceEEEeCC--CCCCcEEEEecc
Confidence              6689999999998  7899999999999999998 68887777655  679999998753

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.96  E-value=2e-27  Score=248.49  Aligned_cols=211  Identities=21%  Similarity=0.388  Sum_probs=181.1

Q ss_pred             CCCEEEEEe--cccEEEEEcCCC----ce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC
Q psy952           15 IKPWLIFSN--KYYVRNMSLDAT----QY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS   87 (573)
Q Consensus        15 ~~~~l~~s~--~~~I~~i~l~g~----~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~   87 (573)
                      ....|++++  .+.|+++++++.    .. .++...+..|.||++|+.++.|||+|...++|.+++++|....+++..++
T Consensus       122 ~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~  201 (400)
T 3p5b_L          122 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG  201 (400)
T ss_dssp             TTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSS
T ss_pred             ccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCC
Confidence            356788886  478999999873    23 34444788899999999999999999999999999999998888888888


Q ss_pred             CCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc
Q psy952           88 HGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF  165 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~  165 (573)
                      ..|.+||||+.+++|||||.. .++|++++++|..+++++ ..+..|+|||||+.+++|||+|+. ..+|++++++|..+
T Consensus       202 ~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~-~~~I~~~d~dG~~~  280 (400)
T 3p5b_L          202 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNR  280 (400)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCCC
T ss_pred             CCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECC-CCEEEEEeCCCCcc
Confidence            999999999999999999976 489999999999988887 578899999999999999999965 67999999999999


Q ss_pred             EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEe-CCCCcEEEEEeCCccceeEEEeeeCC
Q psy952          166 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVD-LDGKHKHIVISGQKVPHVFALTLFED  230 (573)
Q Consensus       166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~l~~~~~~~~p~~ia~~~~  230 (573)
                      ++++.....+..|.||+++  +++|||+|+..++|.+++ .+|..+++|...  +.+|++|+++..
T Consensus       281 ~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~--~~~p~~i~v~~~  342 (400)
T 3p5b_L          281 KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAEN--LLSPEDMVLFHN  342 (400)
T ss_dssp             EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSSCCCCEEEECS--CSCEEEEEEESG
T ss_pred             EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCCCCceEEEecC--CCCCceEEEEee
Confidence            9988423457889999996  889999999999999999 788888888755  689999998754

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.95  E-value=1.8e-26  Score=233.59  Aligned_cols=210  Identities=21%  Similarity=0.375  Sum_probs=178.0

Q ss_pred             CCEEEEEe--cccEEEEEcCC----Cceeecc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCC
Q psy952           16 KPWLIFSN--KYYVRNMSLDA----TQYSLVH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSH   88 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g----~~~~~~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~   88 (573)
                      ...|++++  .+.|+++++++    .....++ ..+..|.+|++|+.++.|||+|...++|.+++++|....+++...+.
T Consensus        41 ~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~  120 (316)
T 1ijq_A           41 SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS  120 (316)
T ss_dssp             TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC
T ss_pred             CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCC
Confidence            45788887  47899999987    4333333 46678999999999999999999999999999999887777777788


Q ss_pred             CcceeEEeecCCcEEEEeCCC-CeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           89 GLEGLAVDWVGRKLYWLDRHS-KQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~-~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      .|.+||+|+.+++|||+|... ++|++++++|+.+++++ ..+..|+|||+|+..++|||+|.. ..+|++++++|+.++
T Consensus       121 ~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~-~~~I~~~d~dg~~~~  199 (316)
T 1ijq_A          121 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNRK  199 (316)
T ss_dssp             CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCE
T ss_pred             CcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECC-CCeEEEEecCCCceE
Confidence            999999999999999999875 89999999999988876 478889999999999999999965 679999999999999


Q ss_pred             EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC-CCCcEEEEEeCCccceeEEEeeeCC
Q psy952          167 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL-DGKHKHIVISGQKVPHVFALTLFED  230 (573)
Q Consensus       167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~-dG~~~~~l~~~~~~~~p~~ia~~~~  230 (573)
                      +++.....+..|.||+++  +++|||+|+..++|.+++. +|...+++..+  +..|.+|+++..
T Consensus       200 ~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~--~~~p~~i~v~~~  260 (316)
T 1ijq_A          200 TILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAEN--LLSPEDMVLFHN  260 (316)
T ss_dssp             EEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECS--CSCCCCEEEESG
T ss_pred             EEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCCCcceEEEecC--CCCceEEEEecc
Confidence            887422457899999997  6999999999999999997 78888777665  678999998753

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.94  E-value=1.6e-25  Score=224.05  Aligned_cols=210  Identities=14%  Similarity=0.191  Sum_probs=174.9

Q ss_pred             cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEE---CCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC
Q psy952           24 KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFAD---VAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR  100 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d---~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~  100 (573)
                      ++.|++++++|.+.+++......    ++.+.+++|||++   .....|++++++|+..+.|.....     ++++|.++
T Consensus        87 ~~~Iy~i~~dg~~~~~l~~~~~~----~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~-----~~~~~~g~  157 (302)
T 3s25_A           87 RNSLCRIKRNGHGSTVLDPDPCI----YASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL-----FTCNTSDR  157 (302)
T ss_dssp             SEEEEEEETTSCCCEEEECSCEE----EEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC-----CCSEEETT
T ss_pred             CCeEEEEeCCCCcceEeecCCcc----EEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc-----eEeeEECC
Confidence            35799999999988777655432    4555699999999   567799999999999888776542     67899999


Q ss_pred             cEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCce
Q psy952          101 KLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNA  180 (573)
Q Consensus       101 ~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~g  180 (573)
                      +|||++....+|++++++|..+++|..+   +..++++|..++|||++|....+|+|++|||+.+++|+  .+.+  |  
T Consensus       158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt--~~~~--~--  228 (302)
T 3s25_A          158 YFYYNNPKNGQLYRYDTASQSEALFYDC---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT--EANI--E--  228 (302)
T ss_dssp             EEEEECTTTCCEEEEETTTTEEEEEECS---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECS--CSCE--E--
T ss_pred             EEEEEeCCCceEEEEECCCCCEEEEeCC---CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEe--CCCc--c--
Confidence            9999998888999999999998877543   45567889999999999976689999999999998887  4544  3  


Q ss_pred             EEEeccCCeEEEE-eCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          181 LTLDYFTERLYWA-DAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       181 laiD~~~~~LYw~-D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                       .+++.+++|||+ +.....|+++++||+.+++|..+.    ..+|++++++|||+||.+++|++++ .+|+++.+|.
T Consensus       229 -~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~~----~~~i~i~~d~Iy~td~~~~~i~~~~-~dGs~~~~l~  300 (302)
T 3s25_A          229 -HYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKGE----FCNINVTSQYVYFTDFVSNKEYCTS-TQNPDTIKAL  300 (302)
T ss_dssp             -EEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEESC----EEEEEECSSEEEEEETTTCCEEEEE-SSSCCSCEEC
T ss_pred             -eEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCCc----cceEEEeCCEEEEEECCCCeEEEEE-CCCCCceEec
Confidence             377779999997 666789999999999999888753    4589999999999999999999985 7888776664

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.93  E-value=4.5e-24  Score=210.41  Aligned_cols=206  Identities=20%  Similarity=0.353  Sum_probs=172.1

Q ss_pred             CEEEEEECCCCeEEEEEcCCCcce-----EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCC
Q psy952           57 NRFYFADVAAKTIYRSRVGSTEKE-----RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQ  130 (573)
Q Consensus        57 ~~ly~~d~~~~~I~~~~~~g~~~~-----~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~  130 (573)
                      ..|||++.  +.|++++++|....     .++......|.+|++|+.+++|||+|...++|.+++++|...+.++ ..+.
T Consensus         2 ~~l~~~~~--~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQT--GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLG   79 (267)
T ss_dssp             EEEEEEEE--EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred             cEEEEEcC--CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence            46899884  48999999986532     3444345689999999999999999999999999999998776665 4678


Q ss_pred             CcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCCCC
Q psy952          131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLDGK  208 (573)
Q Consensus       131 ~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~dG~  208 (573)
                      .|.+|++|+.+++|||++.. ..+|.+++++|...++++  ...+..|++|++|+.+++|||++..  .++|++++++|.
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~-~~~I~~~~~~g~~~~~~~--~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~  156 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQ-LDRIEVAKMDGTQRRVLF--DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT  156 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSCEEEE--CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred             CccEEEEEecCCeEEEEECC-CCEEEEEEcCCCCEEEEE--ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence            89999999989999999965 678999999999888887  5677899999999989999999987  679999999999


Q ss_pred             cEEEEEeCCccceeEEEeee--CCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeee
Q psy952          209 HKHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVY  269 (573)
Q Consensus       209 ~~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~  269 (573)
                      .++++.... +..|.+|++.  +++|||+|+..++|.+++. +|..+..+......|.+|++.
T Consensus       157 ~~~~~~~~~-~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~-~g~~~~~~~~~~~~P~gi~~d  217 (267)
T 1npe_A          157 NRRILAQDN-LGLPNGLTFDAFSSQLCWVDAGTHRAECLNP-AQPGRRKVLEGLQYPFAVTSY  217 (267)
T ss_dssp             CCEEEECTT-CSCEEEEEEETTTTEEEEEETTTTEEEEEET-TEEEEEEEEECCCSEEEEEEE
T ss_pred             CcEEEEECC-CCCCcEEEEcCCCCEEEEEECCCCEEEEEec-CCCceEEEecCCCCceEEEEe
Confidence            888777544 6789999996  5799999999999999985 444555555567789998764

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.87  E-value=3.4e-20  Score=195.34  Aligned_cols=229  Identities=14%  Similarity=0.152  Sum_probs=178.4

Q ss_pred             CCEEEEEec-ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCC----eEEEEEcCCCcc--eEEEcCCCC
Q psy952           16 KPWLIFSNK-YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK----TIYRSRVGSTEK--ERVIRHDSH   88 (573)
Q Consensus        16 ~~~l~~s~~-~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~----~I~~~~~~g~~~--~~i~~~~~~   88 (573)
                      ...|++++. +.|+++++++..++.+...+..|.+|++|+.++.|||+|...+    .++.+..+|...  ..+.  .+.
T Consensus       149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~--~~~  226 (430)
T 3tc9_A          149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELT--KGQ  226 (430)
T ss_dssp             EEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE--ECS
T ss_pred             CCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeec--cCC
Confidence            356777776 7899999998777777778888999999998888999998543    567777776543  2232  467


Q ss_pred             CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC--
Q psy952           89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN--  164 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~--  164 (573)
                      .|.+|++|+..++|||+|...++|+++++++.....+.  .....|++||++|...+|||++.. ..+|.+++++|..  
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~-~~~I~~~~~d~~~~~  305 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN-QHYILRSDYDWKTKR  305 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC-CCEEEEEeCCccccc
Confidence            99999999888999999999999999999987764443  344679999999987789999964 6799999999753  


Q ss_pred             ---cEEEEec------------CCCCCCCc-eEEEec-------cCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-----
Q psy952          165 ---FTRILTH------------EDDIAWPN-ALTLDY-------FTERLYWADAHLDYIASVDLDGKHKHIVISG-----  216 (573)
Q Consensus       165 ---~~~l~~~------------~~~l~~P~-glaiD~-------~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-----  216 (573)
                         ..++...            ...+..|. |++++.       .++.|||+|...++|.+++.+|....+...+     
T Consensus       306 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~G~v~~~~g~g~~~~~  385 (430)
T 3tc9_A          306 LTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQGRVTTFAGRGSNGTS  385 (430)
T ss_dssp             ECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTTSEEEEEEECCTTSSS
T ss_pred             ccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCCCcEEEEEeCCCCCCC
Confidence               2334321            12367899 899963       3589999999999999999988544443321     


Q ss_pred             ----------CccceeEEEeee--CCeEEEecCCCCceEEEec
Q psy952          217 ----------QKVPHVFALTLF--EDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       217 ----------~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~  247 (573)
                                ..+.+|.+|++.  ++.||++|..+++|++++.
T Consensus       386 G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          386 GYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             SCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             cccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence                      015689999997  4899999999999999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.86  E-value=4.2e-20  Score=194.67  Aligned_cols=228  Identities=13%  Similarity=0.143  Sum_probs=173.4

Q ss_pred             CCEEEEEec-ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC----CeEEEEEcCCCcc-eEEEcCCCCC
Q psy952           16 KPWLIFSNK-YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA----KTIYRSRVGSTEK-ERVIRHDSHG   89 (573)
Q Consensus        16 ~~~l~~s~~-~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~----~~I~~~~~~g~~~-~~i~~~~~~~   89 (573)
                      ...|++++. +.|+++++.+..+..+...+..|.+|++|+..+ |||+|...    ..++++..++... ...+. .+..
T Consensus       152 ~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~  229 (433)
T 4hw6_A          152 YDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARG  229 (433)
T ss_dssp             TCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSS
T ss_pred             CCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCeecccccc-ccCC
Confidence            467888876 899999997766766667788899999998777 99999743    2366666554432 12232 4689


Q ss_pred             cceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEecc--CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC--
Q psy952           90 LEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLKT--AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN--  164 (573)
Q Consensus        90 p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~~--~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~--  164 (573)
                      |.+|++|+..++|||+|...++|.+++++ |...+.+..  ....+.+||++|..++|||+|.. ..+|.++++++..  
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~-~~~I~~~~~d~~~~~  308 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG-KHCIYRVDYNRETGK  308 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT-TTEEEEEEBCTTTCC
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC-CCEEEEEeCCCCCcc
Confidence            99999999899999999999999999998 554344432  33456789999987789999965 6799999988532  


Q ss_pred             ---cEEEEec------------CCCCCCCceEEE---------eccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCC---
Q psy952          165 ---FTRILTH------------EDDIAWPNALTL---------DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ---  217 (573)
Q Consensus       165 ---~~~l~~~------------~~~l~~P~glai---------D~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~---  217 (573)
                         ..+++..            ...+..|.||++         | .++.|||+|+..++|.+++.+|....+...+.   
T Consensus       309 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd-~~g~lyvaD~~n~~I~~~~~~G~v~t~~G~g~~~~  387 (433)
T 4hw6_A          309 LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE-DEYDFYFCDRDSHTVRVLTPEGRVTTYAGRGNSRE  387 (433)
T ss_dssp             BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS-CCEEEEEEETTTTEEEEECTTSEEEEEECCCTTCS
T ss_pred             cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC-CCCcEEEEECCCCEEEEECCCCCEEEEEeCCCCCc
Confidence               2344421            124678999999         5 68899999999999999999884333322111   


Q ss_pred             ------------ccceeEEEeee--CCeEEEecCCCCceEEEec
Q psy952          218 ------------KVPHVFALTLF--EDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       218 ------------~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~  247 (573)
                                  .+.+|.||++.  ++.||++|+.+++|+++++
T Consensus       388 ~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          388 WGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             SCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             cccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence                        26789999998  6899999999999999874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=4.6e-20  Score=194.37  Aligned_cols=208  Identities=16%  Similarity=0.173  Sum_probs=164.1

Q ss_pred             CCcceEEEEEEc-CCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCC----eEEEEEc
Q psy952           43 DLLNVVAMDFHY-KENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSK----QLDVAEL  117 (573)
Q Consensus        43 ~~~~~~~v~~d~-~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~----~I~~~~l  117 (573)
                      .+.+|.+|++|+ ..+.||++|.. ++|+++++++.....++. .+..|.+|++|+.++.|||+|...+    .|.+++.
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            467899999998 58999999998 899999999876666654 6689999999998888999997433    5677787


Q ss_pred             CCCcee-EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952          118 DGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH  196 (573)
Q Consensus       118 dg~~~~-~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~  196 (573)
                      +|.... ..+..+..|.+||++|..|+|||++++ ..+|+++++++.....+.. .....+|++|++++.+++|||+|..
T Consensus       213 ~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~-~~~V~~~~~~~~~~~~~~~-~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          213 ESGFKVITELTKGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETTPLFT-IQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             GGTSCSEEEEEECSSCCCEEECTTTCCEEEEETT-TTEEEEEETTTTEEEEEEE-CSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             CCceeeeeeeccCCCceEEEEeCCCCEEEEEECC-CCEEEEEECCCCcEEEEEE-cCCCCcceeEEEcCCCCEEEEEECC
Confidence            776641 223457889999999989999999976 6799999999876644442 3455789999999988889999999


Q ss_pred             CCeEEEEeCCCCc-----EEEEEeC-------------CccceeE-EEeeeC---------CeEEEecCCCCceEEEecc
Q psy952          197 LDYIASVDLDGKH-----KHIVISG-------------QKVPHVF-ALTLFE---------DHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       197 ~~~I~~~~~dG~~-----~~~l~~~-------------~~~~~p~-~ia~~~---------~~lywtd~~~~~I~~~~~~  248 (573)
                      .++|++++++|..     ..++...             ..+.+|. ++++..         +.|||+|+.+++|.+++ .
T Consensus       291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~  369 (430)
T 3tc9_A          291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-P  369 (430)
T ss_dssp             TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-T
T ss_pred             CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-C
Confidence            9999999999752     2333321             1267899 898853         68999999999999998 4


Q ss_pred             CCcceEE
Q psy952          249 NGRDYRV  255 (573)
Q Consensus       249 ~g~~~~~  255 (573)
                      +|....+
T Consensus       370 ~G~v~~~  376 (430)
T 3tc9_A          370 QGRVTTF  376 (430)
T ss_dssp             TSEEEEE
T ss_pred             CCcEEEE
Confidence            5643333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.85  E-value=3.7e-19  Score=186.43  Aligned_cols=227  Identities=18%  Similarity=0.140  Sum_probs=174.0

Q ss_pred             CCCEEEEEec--ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCC-eEEEEEcCCCcceEEE----cCCC
Q psy952           15 IKPWLIFSNK--YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK-TIYRSRVGSTEKERVI----RHDS   87 (573)
Q Consensus        15 ~~~~l~~s~~--~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~-~I~~~~~~g~~~~~i~----~~~~   87 (573)
                      +..-|++++.  +.|+++++++..+..+......+. +++++..+.|||++...+ .|++++.++......+    ....
T Consensus       140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~  218 (409)
T 3hrp_A          140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFS  218 (409)
T ss_dssp             STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSC
T ss_pred             CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhc
Confidence            4456777765  789999998776665555556677 999999999999998665 9999998765543333    3245


Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEe----cc--CCCCcc-eEEEeCCCceEEEEecCCcCeEEEEec
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL----KT--AIQDPR-GITLHPGIGYVYFSSWNLQAYIGKIGM  160 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l----~~--~~~~P~-~Iavdp~~g~LYwtd~~~~~~I~r~~l  160 (573)
                      ..|.+|++|+.+++|||++. .++|.++++++.....+    ..  ....|. +|+++|..+.|||++.. ..+|.++++
T Consensus       219 ~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~-~~~I~~~~~  296 (409)
T 3hrp_A          219 GKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQN-LSSVYKITP  296 (409)
T ss_dssp             SCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETT-TTEEEEECT
T ss_pred             CCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCC-CCEEEEEec
Confidence            78999999998999999876 67999999987765555    22  123477 99999988999999964 679999999


Q ss_pred             cCCCcEEEEecC------------CCCCCCceEEEeccCCeEEEEeC-CCCeEEEEe-CCCCcEEEEEeC----------
Q psy952          161 DGSNFTRILTHE------------DDIAWPNALTLDYFTERLYWADA-HLDYIASVD-LDGKHKHIVISG----------  216 (573)
Q Consensus       161 dG~~~~~l~~~~------------~~l~~P~glaiD~~~~~LYw~D~-~~~~I~~~~-~dG~~~~~l~~~----------  216 (573)
                      +|.. .+++...            ..+.+|.||++|+. ++||++|. ..++|.+++ .+|. ..++...          
T Consensus       297 ~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d-G~lyvad~~~~~~I~~~~~~~G~-v~~~~g~~~~~g~~~g~  373 (409)
T 3hrp_A          297 DGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDED-GNFYIVDGFKGYCLRKLDILDGY-VSTVAGQVDVASQIDGT  373 (409)
T ss_dssp             TCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT-CCEEEEETTTTCEEEEEETTTTE-EEEEEECTTCBSCCCBS
T ss_pred             CCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC-CCEEEEeCCCCCEEEEEECCCCE-EEEEeCCCCCCCcCCCC
Confidence            9973 3444211            12678999999965 56999999 999999999 5554 4444432          


Q ss_pred             ---CccceeEEEeeeC-CeEEEecCCCCceEEEec
Q psy952          217 ---QKVPHVFALTLFE-DHIYWTDWNTKSINRADK  247 (573)
Q Consensus       217 ---~~~~~p~~ia~~~-~~lywtd~~~~~I~~~~~  247 (573)
                         ..+..|.+|++.. +.||++|+.+++|.++..
T Consensus       374 ~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          374 PLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             TTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             hhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence               1157899999965 899999999999998863

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.84  E-value=2.5e-19  Score=188.76  Aligned_cols=207  Identities=13%  Similarity=0.116  Sum_probs=157.1

Q ss_pred             CCcceEEEEEEcC--CCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCC----CeEEEEE
Q psy952           43 DLLNVVAMDFHYK--ENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHS----KQLDVAE  116 (573)
Q Consensus        43 ~~~~~~~v~~d~~--~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~----~~I~~~~  116 (573)
                      .+..|.+|++|+.  ++.|||+|.. ++|+++++.+.....++ ..+..|.+|++|+.++ |||+|...    ..|.++.
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~  213 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT  213 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred             ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEee-cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence            4677999999984  7999999988 89999999766555554 3667899999998776 99999743    2355566


Q ss_pred             cCCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-CCCcEEEEecCCCCCCCceEEEeccCCeEEEEe
Q psy952          117 LDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GSNFTRILTHEDDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       117 ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      ..+... ...+..+..|.+||+||..|.|||+++. ..+|++++++ |.....++. .....+|.+|++++.+++|||+|
T Consensus       214 ~~~~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~-~~~V~~~d~~~g~~~~~~~~-~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          214 RASGFTERLSLCNARGAKTCAVHPQNGKIYYTRYH-HAMISSYDPATGTLTEEEVM-MDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             GGGTTCCEEEEEECSSBCCCEECTTTCCEEECBTT-CSEEEEECTTTCCEEEEEEE-CSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CCCCeeccccccccCCCCEEEEeCCCCeEEEEECC-CCEEEEEECCCCeEEEEEec-cCCCCCcccEEEeCCCCEEEEEe
Confidence            555443 1233467889999999999999999975 6789999998 554244442 34456678899999888899999


Q ss_pred             CCCCeEEEEeCCCCc-----EEEEEeC-------------CccceeEEEee---------e-CCeEEEecCCCCceEEEe
Q psy952          195 AHLDYIASVDLDGKH-----KHIVISG-------------QKVPHVFALTL---------F-EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       195 ~~~~~I~~~~~dG~~-----~~~l~~~-------------~~~~~p~~ia~---------~-~~~lywtd~~~~~I~~~~  246 (573)
                      ...++|+++++++..     ..+++..             ..+.+|.+|++         . ++.|||+|+.+++|.+++
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            999999999988532     2333321             12678999999         4 468999999999999998


Q ss_pred             ccCCcceEE
Q psy952          247 KFNGRDYRV  255 (573)
Q Consensus       247 ~~~g~~~~~  255 (573)
                      + +|...++
T Consensus       372 ~-~G~v~t~  379 (433)
T 4hw6_A          372 P-EGRVTTY  379 (433)
T ss_dssp             T-TSEEEEE
T ss_pred             C-CCCEEEE
Confidence            5 6643333

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.83  E-value=1.6e-18  Score=181.44  Aligned_cols=207  Identities=14%  Similarity=0.114  Sum_probs=161.6

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCC-eEEEEEcCCCc
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSK-QLDVAELDGTN  121 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~-~I~~~~ldg~~  121 (573)
                      .+..|.+|++|+ ++.|||+|..+++|+++++++.....++.. ...|. |++++.++.|||++...+ +|++++.++..
T Consensus       129 ~~~~P~~la~d~-~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          129 KFKYMWGIAAVG-NNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCCCEEEEEECS-TTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             ccCCceEEEEeC-CCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            367899999995 678999999999999999997766666554 45777 999999999999998654 89999988765


Q ss_pred             eeEec----c-CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec--CCC-CCCCc-eEEEeccCCeEEE
Q psy952          122 RKTLK----T-AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH--EDD-IAWPN-ALTLDYFTERLYW  192 (573)
Q Consensus       122 ~~~l~----~-~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~--~~~-l~~P~-glaiD~~~~~LYw  192 (573)
                      ....+    . ....|++||++|..|.||+++.  ..+|+++++++.....+...  ... ...|. +|++++.+++|||
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~--~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDS--NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECT--TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEEC--CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            43222    3 6678999999999999999884  56899999987765555210  111 22356 9999988899999


Q ss_pred             EeCCCCeEEEEeCCCCcEEEEEeC------------CccceeEEEeee-CCeEEEecC-CCCceEEEeccCCcceE
Q psy952          193 ADAHLDYIASVDLDGKHKHIVISG------------QKVPHVFALTLF-EDHIYWTDW-NTKSINRADKFNGRDYR  254 (573)
Q Consensus       193 ~D~~~~~I~~~~~dG~~~~~l~~~------------~~~~~p~~ia~~-~~~lywtd~-~~~~I~~~~~~~g~~~~  254 (573)
                      +|...++|++++++|....++...            ..+..|.+|++. ++.|||+|+ .+++|++++..+|....
T Consensus       284 ~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~  359 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVST  359 (409)
T ss_dssp             EETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEE
T ss_pred             EeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEE
Confidence            999999999999999743332222            115679999996 467999999 99999999966675433

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=99.82  E-value=1.9e-18  Score=172.71  Aligned_cols=235  Identities=13%  Similarity=0.250  Sum_probs=178.0

Q ss_pred             CCCceeeCCCCCCEEEEEe---cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC-------------CCe
Q psy952            5 DESTCKRRDSIKPWLIFSN---KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA-------------AKT   68 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~---~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~-------------~~~   68 (573)
                      .|.-|..    ..+|+|++   ...|++++++|+..+.+...  .+.-  +.+.++.||+++..             ...
T Consensus        18 ~g~~~~~----g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~~--i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~   89 (302)
T 3s25_A           18 AGLFCES----DGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAMY--INADKNYVYYVRNNNQKITSQTFFSYDRNS   89 (302)
T ss_dssp             TTCEEEE----TTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEEE--EEECSSEEEEEEECC------CCSSCCSEE
T ss_pred             ceEEEEe----CCEEEEEeCCCCceEEEEcCCCCCCEEccCC--ceee--EEEcCCEEEEEECCCCcccccceeccCCCe
Confidence            3555653    46899987   57899999999987776443  2333  35569999999765             358


Q ss_pred             EEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEe---CCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEE
Q psy952           69 IYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD---RHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVY  145 (573)
Q Consensus        69 I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td---~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LY  145 (573)
                      |++++++|+..+.|.. ..    +.++...++.|||++   .....|++++++|+.++.|.....    ++++|..+.||
T Consensus        90 Iy~i~~dg~~~~~l~~-~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy  160 (302)
T 3s25_A           90 LCRIKRNGHGSTVLDP-DP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFY  160 (302)
T ss_dssp             EEEEETTSCCCEEEEC-SC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEE
T ss_pred             EEEEeCCCCcceEeec-CC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEE
Confidence            9999999998766543 21    335555799999999   567799999999999888875432    45688899999


Q ss_pred             EEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC-CeEEEEeCCCCcEEEEEeCCccceeEE
Q psy952          146 FSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL-DYIASVDLDGKHKHIVISGQKVPHVFA  224 (573)
Q Consensus       146 wtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~l~~~~~~~~p~~  224 (573)
                      |++. ..+.|+++.++|..++.|.  ..    +..+++.|.++.|||+++.. .+|++++++|+.+++|.... +  | .
T Consensus       161 ~t~~-g~~~Iy~~~l~g~~~~~l~--~~----~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~~-~--~-~  229 (302)
T 3s25_A          161 YNNP-KNGQLYRYDTASQSEALFY--DC----NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEAN-I--E-H  229 (302)
T ss_dssp             EECT-TTCCEEEEETTTTEEEEEE--CS----CEEEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCSC-E--E-E
T ss_pred             EEeC-CCceEEEEECCCCCEEEEe--CC----CccceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCCC-c--c-e
Confidence            9996 4679999999999988877  33    33445668899999999865 58999999999998886543 3  3 3


Q ss_pred             EeeeCCeEEEe-cCCCCceEEEeccCCcceEEEcccCCCceeeeeee
Q psy952          225 LTLFEDHIYWT-DWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYH  270 (573)
Q Consensus       225 ia~~~~~lywt-d~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~  270 (573)
                      +++.+++|||+ +.....|++++ .+|+.++.|...  ....|.++.
T Consensus       230 ~~~~g~~Iy~~~~~~~~~i~~~~-~DG~~r~~l~~~--~~~~i~i~~  273 (302)
T 3s25_A          230 YNVYGSLIFYQRGGDNPALCVVK-NDGTGFKELAKG--EFCNINVTS  273 (302)
T ss_dssp             EEEETTEEEEEECSSSCEEEEEE-TTSCCCEEEEES--CEEEEEECS
T ss_pred             EEECCCEEEEEECCCCcEEEEEE-CCCCccEEeeCC--ccceEEEeC
Confidence            88899999997 55668899997 688887777653  233555544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=1.1e-17  Score=176.35  Aligned_cols=229  Identities=16%  Similarity=0.146  Sum_probs=171.5

Q ss_pred             CEEEEEec--ccEEEEEcCCCceeeccc----CCcceEEEEE-------EcCCCEEEEEECCCC------eEEEEEcCC-
Q psy952           17 PWLIFSNK--YYVRNMSLDATQYSLVHQ----DLLNVVAMDF-------HYKENRFYFADVAAK------TIYRSRVGS-   76 (573)
Q Consensus        17 ~~l~~s~~--~~I~~i~l~g~~~~~~~~----~~~~~~~v~~-------d~~~~~ly~~d~~~~------~I~~~~~~g-   76 (573)
                      ..|+++..  +.|++|++.+..++.+..    .+..|.+|+|       |...++||++|...+      .|+++..+. 
T Consensus       152 ~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~  231 (496)
T 3kya_A          152 DHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD  231 (496)
T ss_dssp             EEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT
T ss_pred             CEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC
Confidence            34555543  689999998877765543    2446999999       988888999998762      477775443 


Q ss_pred             -Ccce----EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-------CCce------------eEec--cCCC
Q psy952           77 -TEKE----RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-------GTNR------------KTLK--TAIQ  130 (573)
Q Consensus        77 -~~~~----~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-------g~~~------------~~l~--~~~~  130 (573)
                       ....    .++. .+..|.+|++|+.++.||+++...++|.+++++       +...            +.+.  ....
T Consensus       232 G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~  310 (496)
T 3kya_A          232 GTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS  310 (496)
T ss_dssp             SCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS
T ss_pred             Cceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC
Confidence             3221    2333 457999999999999999999999999999997       3322            2232  2345


Q ss_pred             CcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc-----EEEEec------------CCCCCCCc-eEEEec------c
Q psy952          131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF-----TRILTH------------EDDIAWPN-ALTLDY------F  186 (573)
Q Consensus       131 ~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~-----~~l~~~------------~~~l~~P~-glaiD~------~  186 (573)
                      .|++||++|...+||++|+. ..+|.+++++|...     .+++..            ...|..|. ++++|.      .
T Consensus       311 ~p~~ia~~p~G~~lYvaD~~-~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~  389 (496)
T 3kya_A          311 WEFQIFIHPTGKYAYFGVIN-NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEE  389 (496)
T ss_dssp             CCEEEEECTTSSEEEEEETT-TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSC
T ss_pred             CceEEEEcCCCCEEEEEeCC-CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccC
Confidence            69999999987789999965 78999999998653     344421            12467899 888873      5


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCcEEEEE-eCC---------------------ccceeEEEeeeC--CeEEEecCCCCce
Q psy952          187 TERLYWADAHLDYIASVDLDGKHKHIVI-SGQ---------------------KVPHVFALTLFE--DHIYWTDWNTKSI  242 (573)
Q Consensus       187 ~~~LYw~D~~~~~I~~~~~dG~~~~~l~-~~~---------------------~~~~p~~ia~~~--~~lywtd~~~~~I  242 (573)
                      ++.||++|+.+++|.+++.+|. ..+++ .+.                     .+.+|.||++..  +.||++|..+++|
T Consensus       390 ~g~lyVaD~~N~rIr~i~~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rI  468 (496)
T 3kya_A          390 EYDFYFVDRLNFCVRKVTPEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTI  468 (496)
T ss_dssp             CEEEEEEEGGGTEEEEECTTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCeEEEEECCCCEEEEEeCCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEE
Confidence            7899999999999999999984 44443 210                     267899999975  7999999999999


Q ss_pred             EEEecc
Q psy952          243 NRADKF  248 (573)
Q Consensus       243 ~~~~~~  248 (573)
                      ++++..
T Consensus       469 rki~~~  474 (496)
T 3kya_A          469 RTISME  474 (496)
T ss_dssp             EEEEEC
T ss_pred             EEEECC
Confidence            999753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.81  E-value=4e-18  Score=179.66  Aligned_cols=208  Identities=15%  Similarity=0.230  Sum_probs=160.4

Q ss_pred             CCcceEEEEEEc-CCCEEEEEECCCCeEEEEEcCCCcceEEEcCC---CCCcceeEE-------eecCCcEEEEeCCCC-
Q psy952           43 DLLNVVAMDFHY-KENRFYFADVAAKTIYRSRVGSTEKERVIRHD---SHGLEGLAV-------DWVGRKLYWLDRHSK-  110 (573)
Q Consensus        43 ~~~~~~~v~~d~-~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~---~~~p~glav-------D~~~~~LY~td~~~~-  110 (573)
                      .+..|.+|+||+ ..++||+++...+.|+++++++....+++..+   +..|.+|++       |..++.||+++...+ 
T Consensus       137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~  216 (496)
T 3kya_A          137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK  216 (496)
T ss_dssp             CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred             ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence            356799999998 48999999998889999999988777776543   457999999       988888999998652 


Q ss_pred             -----eEEEEEcC--CCcee----EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc--------CCC-------
Q psy952          111 -----QLDVAELD--GTNRK----TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD--------GSN-------  164 (573)
Q Consensus       111 -----~I~~~~ld--g~~~~----~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld--------G~~-------  164 (573)
                           .|.+++..  |....    ..+..+.+|.+|++||..++||++++. ..+|+|++++        |..       
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~-~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYE-KGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETT-TTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             cccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECC-CCEEEEEecccccccccCceeecccccc
Confidence                 47777533  34431    233457789999999999999999975 5789999997        332       


Q ss_pred             ----cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE-----EEEEeC-------------Ccccee
Q psy952          165 ----FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK-----HIVISG-------------QKVPHV  222 (573)
Q Consensus       165 ----~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~-----~~l~~~-------------~~~~~p  222 (573)
                          .+.++. .....+|.+|++++.++.||++|+..++|++++++|...     .+++..             ..+.+|
T Consensus       296 ~~g~~~~l~~-~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P  374 (496)
T 3kya_A          296 NPNTFKQLFT-IADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP  374 (496)
T ss_dssp             CTTTEEEEEE-CSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred             cccccceeEe-cCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence                123332 345678999999998888999999999999999988542     334321             126789


Q ss_pred             E-EEeee--------CCeEEEecCCCCceEEEeccCCcce
Q psy952          223 F-ALTLF--------EDHIYWTDWNTKSINRADKFNGRDY  253 (573)
Q Consensus       223 ~-~ia~~--------~~~lywtd~~~~~I~~~~~~~g~~~  253 (573)
                      . ++++.        ++.||++|+.+++|++++ .+|...
T Consensus       375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~  413 (496)
T 3kya_A          375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS  413 (496)
T ss_dssp             EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE
T ss_pred             eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE
Confidence            9 78885        468999999999999998 466433

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.80  E-value=1.4e-17  Score=169.05  Aligned_cols=226  Identities=16%  Similarity=0.121  Sum_probs=169.3

Q ss_pred             ccCCcceEEEEEEcCCCEEEEEECCC------------------------CeEEEEEcCCCcceEEE-cCCCCCcceeEE
Q psy952           41 HQDLLNVVAMDFHYKENRFYFADVAA------------------------KTIYRSRVGSTEKERVI-RHDSHGLEGLAV   95 (573)
Q Consensus        41 ~~~~~~~~~v~~d~~~~~ly~~d~~~------------------------~~I~~~~~~g~~~~~i~-~~~~~~p~glav   95 (573)
                      ...+..+.+|++|+ .++||+++...                        +.|++++.+........ ...+..|.+||+
T Consensus        20 ~~~l~~v~~va~d~-~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~   98 (329)
T 3fvz_A           20 YLLPGQVSGVALDS-KNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSI   98 (329)
T ss_dssp             GCCCSCEEEEEECT-TCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEE
T ss_pred             ceecCCceEEEECC-CCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEE
Confidence            34577899999996 57999999877                        36899988643332233 234679999999


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCC--ceeEec---------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGT--NRKTLK---------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~--~~~~l~---------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      |+ .++||++|...++|.+++++|.  ....+.         ..+..|.+||++|..+.||+++.....+|.+.+.+|..
T Consensus        99 d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~  177 (329)
T 3fvz_A           99 DT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKF  177 (329)
T ss_dssp             CT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTSCE
T ss_pred             CC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCE
Confidence            96 5569999999999999999987  444442         24557999999998899999995236789999999987


Q ss_pred             cEEEEec-------CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCCccceeEEEeee-------C
Q psy952          165 FTRILTH-------EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQKVPHVFALTLF-------E  229 (573)
Q Consensus       165 ~~~l~~~-------~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~~-------~  229 (573)
                      ...+...       ...+..|.+|++|+.+++||++|...++|.+++++ |.....+........|+++++.       +
T Consensus       178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred             EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence            6665320       12456799999998789999999999999999998 7766665432213456666554       3


Q ss_pred             CeEEEecCCCCceEEEeccCCcceEEEc---ccCCCceeeee
Q psy952          230 DHIYWTDWNTKSINRADKFNGRDYRVLR---NTTHRPYDIHV  268 (573)
Q Consensus       230 ~~lywtd~~~~~I~~~~~~~g~~~~~l~---~~~~~p~~i~v  268 (573)
                      +.+|+++....+|+.++..+|+...++.   ..+..|.+|++
T Consensus       258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~  299 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVA  299 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEE
T ss_pred             CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEE
Confidence            4566666667789999888888777663   34567888776

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.79  E-value=5.9e-18  Score=165.88  Aligned_cols=225  Identities=16%  Similarity=0.217  Sum_probs=168.1

Q ss_pred             CCEEEE-Ee--cccEEEEEcCCCceeec-ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952           16 KPWLIF-SN--KYYVRNMSLDATQYSLV-HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLE   91 (573)
Q Consensus        16 ~~~l~~-s~--~~~I~~i~l~g~~~~~~-~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~   91 (573)
                      ...|++ ++  .+.|++++..+...... ...+..|.+|++|+ +++||+++. .+.|++++.++.....+...++..|.
T Consensus        34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~  111 (270)
T 1rwi_B           34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPE  111 (270)
T ss_dssp             TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEE
T ss_pred             CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCc
Confidence            344666 53  46788888766544332 33456799999997 456999998 78999999988765544444567899


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      +|++|. .++||+++...+.|.+++.......... ..+..|.+|++++ .|.||+++.. ...|.+.++++....... 
T Consensus       112 ~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~~~~~~~~~-  187 (270)
T 1rwi_B          112 GLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD-NNRVVKLEAESNNQVVLP-  187 (270)
T ss_dssp             EEEECT-TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT-TCCEEEEEGG-GTEEEEECTTTCCEEECC-
T ss_pred             ceEECC-CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC-CCCEEEEECC-CCEEEEEecCCCceEeec-
Confidence            999997 5679999988889999965543333222 4566899999999 6679999964 568999999887655443 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~  249 (573)
                       ...+..|.+|++|+. ++||+++...+.|.+++.+|.....+.... +..|.+|++. ++.||++++.+++|.++++..
T Consensus       188 -~~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~  264 (270)
T 1rwi_B          188 -FTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  264 (270)
T ss_dssp             -CSSCCSEEEEEECTT-CCEEEEETTTSCEEEECTTCSCCEECCCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             -ccCCCCceEEEECCC-CCEEEEECCCCcEEEEcCCCCcceeeccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCC
Confidence             455688999999964 599999999999999999987665543333 5789999996 468999999999999887543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.79  E-value=1.7e-17  Score=162.62  Aligned_cols=214  Identities=15%  Similarity=0.228  Sum_probs=158.8

Q ss_pred             ceEEEEEEcCCCEEEE-EECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952           46 NVVAMDFHYKENRFYF-ADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT  124 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~-~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~  124 (573)
                      .|.+|++|+ +++||+ ++...+.|++++.++.....+...++..|.+|++|+ .++||+++. .+.|.++++++.....
T Consensus        25 ~p~~i~~~~-~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~  101 (270)
T 1rwi_B           25 SPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTV  101 (270)
T ss_dssp             CEEEEEECT-TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred             CccceEECC-CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEee
Confidence            899999997 456999 888889999998866544433334557899999997 456999998 7899999999877655


Q ss_pred             ec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952          125 LK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV  203 (573)
Q Consensus       125 l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~  203 (573)
                      +. ..+..|.+|++++ .|.||+++.. ...|.+.+..........  ...+..|.+|++|+ +++||+++...+.|.++
T Consensus       102 ~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~  176 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDT-QGAVYVADRG-NNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKL  176 (270)
T ss_dssp             CCCCSCSSEEEEEECT-TCCEEEEEGG-GTEEEEECTTCCSCEECC--CCSCCSCCCEEECT-TCCEEEEEGGGTEEEEE
T ss_pred             eecCCcCCCcceEECC-CCCEEEEECC-CCEEEEEECCCceeEeec--cccCCCceeEEEeC-CCCEEEEECCCCEEEEE
Confidence            44 4567899999999 6789999854 567888865443333322  35567899999996 55799999988999999


Q ss_pred             eCCCCcEEEEEeCCccceeEEEeeeC-CeEEEecCCCCceEEEeccCCcceEEE-cccCCCceeeeee
Q psy952          204 DLDGKHKHIVISGQKVPHVFALTLFE-DHIYWTDWNTKSINRADKFNGRDYRVL-RNTTHRPYDIHVY  269 (573)
Q Consensus       204 ~~dG~~~~~l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~~~~~~~g~~~~~l-~~~~~~p~~i~v~  269 (573)
                      +.++.......... +..|.+|++.. +.||++++..++|.+++..+ .....+ ...+..|.+|++.
T Consensus       177 ~~~~~~~~~~~~~~-~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-~~~~~~~~~~~~~p~~i~~~  242 (270)
T 1rwi_B          177 EAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS-TTSTVLPFTGLNTPLAVAVD  242 (270)
T ss_dssp             CTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETTTSCEEEECTTC-SCCEECCCCSCSCEEEEEEC
T ss_pred             ecCCCceEeecccC-CCCceEEEECCCCCEEEEECCCCcEEEEcCCC-CcceeeccCCCCCceeEEEC
Confidence            99987765443333 57899999964 59999999999999998643 333333 2334567777654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=1e-16  Score=162.70  Aligned_cols=219  Identities=10%  Similarity=0.062  Sum_probs=160.3

Q ss_pred             cEEEEEcCCCcee-ecc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC--cceEEE--------cCCCCCccee
Q psy952           26 YVRNMSLDATQYS-LVH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST--EKERVI--------RHDSHGLEGL   93 (573)
Q Consensus        26 ~I~~i~l~g~~~~-~~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~--~~~~i~--------~~~~~~p~gl   93 (573)
                      .|++++.+...+. ... ..+..|.+|++|+ ++.||++|...++|++++++|.  ....+.        ...+..|.+|
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDT-DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTCSSEEEEEECT-TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             cEEEEECCCCeEEeccCCCccCCceEEEECC-CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            4888888643332 222 3456899999996 5569999999999999999886  333332        2335689999


Q ss_pred             EEeecCCcEEEEeC-CCCeEEEEEcCCCceeEecc----------CCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-
Q psy952           94 AVDWVGRKLYWLDR-HSKQLDVAELDGTNRKTLKT----------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-  161 (573)
Q Consensus        94 avD~~~~~LY~td~-~~~~I~~~~ldg~~~~~l~~----------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-  161 (573)
                      ++|+..++||++|. ..++|.+++.+|.....+..          .+..|.+||++|..+.||+++++ ..+|.+.+++ 
T Consensus       149 a~~~~~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~-~~~I~~~~~~~  227 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE-NGRIQCFKTDT  227 (329)
T ss_dssp             EECTTTCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT-TTEEEEEETTT
T ss_pred             EEeCCCCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC-CCEEEEEECCC
Confidence            99987899999996 78999999999988777642          34569999999987999999975 6789999998 


Q ss_pred             CCCcEEEEecCCCCCCCceEEEec-----cCCeEEEEeCCCCeEEEEeCC-CCcEEEEEe-CCccceeEEEeee-CCeEE
Q psy952          162 GSNFTRILTHEDDIAWPNALTLDY-----FTERLYWADAHLDYIASVDLD-GKHKHIVIS-GQKVPHVFALTLF-EDHIY  233 (573)
Q Consensus       162 G~~~~~l~~~~~~l~~P~glaiD~-----~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~-~~~~~~p~~ia~~-~~~ly  233 (573)
                      |.....+.. ......|.++++.+     .++++|+++....+|..+++. |.....+.. ...+..|.+|++. ++.||
T Consensus       228 G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          228 KEFVREIKH-ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVY  306 (329)
T ss_dssp             CCEEEEECC-TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEE
T ss_pred             CcEEEEEec-cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEE
Confidence            766555531 12223455555543     234566666667789999965 443333321 1227789999995 45899


Q ss_pred             EecCCCCceEEEec
Q psy952          234 WTDWNTKSINRADK  247 (573)
Q Consensus       234 wtd~~~~~I~~~~~  247 (573)
                      ++++.+++|.+++.
T Consensus       307 vad~~~~~I~~~~~  320 (329)
T 3fvz_A          307 IGDAHTNTVWKFTL  320 (329)
T ss_dssp             EEESSSCCEEEEEE
T ss_pred             EEECCCCEEEEEeC
Confidence            99999999999874

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.77  E-value=2.9e-16  Score=155.40  Aligned_cols=225  Identities=11%  Similarity=0.117  Sum_probs=171.9

Q ss_pred             CCEEEEEe--cccEEEEEcCCCceeecc------cCCcceEEEEEEcCCCEEEEEECC-CCeEEEEEcCCCcceEEEcCC
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQYSLVH------QDLLNVVAMDFHYKENRFYFADVA-AKTIYRSRVGSTEKERVIRHD   86 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~------~~~~~~~~v~~d~~~~~ly~~d~~-~~~I~~~~~~g~~~~~i~~~~   86 (573)
                      ...|++++  .+.|+++++++.....+.      ..+..|.+|+++..+++||+++.. .+.|++++.+|.....+....
T Consensus        40 ~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~  119 (286)
T 1q7f_A           40 QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI  119 (286)
T ss_dssp             TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT
T ss_pred             CCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCcc
Confidence            34566664  467999998876443332      124579999998778999999975 789999998776555444444


Q ss_pred             CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      +..|.+|++|. .++||+++...+.|.+++.+|.....+.  ..+..|++|++++ .|.||+++.. ...|.+.+.+|..
T Consensus       120 ~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~  196 (286)
T 1q7f_A          120 LQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR-AHCVKVFNYEGQY  196 (286)
T ss_dssp             CSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG-GTEEEEEETTCCE
T ss_pred             CCCceEEEEeC-CCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECC-CCCEEEEECC-CCEEEEEcCCCCE
Confidence            57899999997 4579999998899999999987766654  3566799999999 6789999854 6789999998876


Q ss_pred             cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC-eEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCce
Q psy952          165 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLD-YIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSI  242 (573)
Q Consensus       165 ~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~-~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I  242 (573)
                      ...+.. ...+..|.+|++|+ +++||+++...+ +|.+++.+|.....+........|.+|++. ++.||+++. .++|
T Consensus       197 ~~~~~~-~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~-~~~v  273 (286)
T 1q7f_A          197 LRQIGG-EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK-DYRL  273 (286)
T ss_dssp             EEEESC-TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET-TTEE
T ss_pred             EEEEcc-CCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEEECCCCcEEEECC-CCeE
Confidence            555431 22367899999996 569999999886 999999999877776654324569999995 578999975 6777


Q ss_pred             EEEe
Q psy952          243 NRAD  246 (573)
Q Consensus       243 ~~~~  246 (573)
                      ...+
T Consensus       274 ~v~~  277 (286)
T 1q7f_A          274 YIYR  277 (286)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7665

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.76  E-value=5.6e-16  Score=153.63  Aligned_cols=246  Identities=15%  Similarity=0.173  Sum_probs=178.4

Q ss_pred             CCCEEEEEec--ccEEEEEcCCCceeecc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952           15 IKPWLIFSNK--YYVRNMSLDATQYSLVH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLE   91 (573)
Q Consensus        15 ~~~~l~~s~~--~~I~~i~l~g~~~~~~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~   91 (573)
                      +...|++++.  +.|.++++++....... .....|.+|++|. ++.||+++...+.|++++.++......+......|.
T Consensus        29 ~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~  107 (300)
T 2qc5_A           29 EDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSS-LGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPY  107 (300)
T ss_dssp             TTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE
T ss_pred             CCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcceeEEECC-CCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCc
Confidence            3455666653  68999988843222222 2346799999994 678999998888999999885433222222346899


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      +|++|. .++||+++...+.|.+++++|......+ .....|.+|++++ .|.||+++.. ...|.+.+.+|....... 
T Consensus       108 ~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~-  183 (300)
T 2qc5_A          108 GITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGS-DNALWFTENQ-NNSIGRITNTGKLEEYPL-  183 (300)
T ss_dssp             EEEECS-TTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSSEEEEETT-TTEEEEECTTCCEEEEEC-
T ss_pred             cceECC-CCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEEECC-CCCEEEEecC-CCeEEEECCCCcEEEeeC-
Confidence            999995 6789999988889999999866554333 3567799999998 5679999853 568999999776544322 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~  249 (573)
                       ...+..|.+|++|+ +++||+++...+.|.+++.+|.......... ...|.+|++. ++.||+++...+.|.+++. +
T Consensus       184 -~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~  259 (300)
T 2qc5_A          184 -PTNAAAPVGITSGN-DGALWFVEIMGNKIGRITTTGEISEYDIPTP-NARPHAITAGKNSEIWFTEWGANQIGRITN-D  259 (300)
T ss_dssp             -SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSST-TCCEEEEEECSTTCEEEEETTTTEEEEECT-T
T ss_pred             -CCCCCCcceEEECC-CCCEEEEccCCCEEEEEcCCCcEEEEECCCC-CCCceEEEECCCCCEEEeccCCCeEEEECC-C
Confidence             45567899999996 6799999999999999999776554433333 6789999996 5689999999999999986 5


Q ss_pred             CcceEE-EcccCCCceeeeee
Q psy952          250 GRDYRV-LRNTTHRPYDIHVY  269 (573)
Q Consensus       250 g~~~~~-l~~~~~~p~~i~v~  269 (573)
                      |..... +......|.+|++.
T Consensus       260 g~~~~~~~~~~~~~~~~i~~~  280 (300)
T 2qc5_A          260 NTIQEYQLQTENAEPHGITFG  280 (300)
T ss_dssp             SCEEEEECCSTTCCCCCEEEC
T ss_pred             CcEEEEECCccCCccceeEeC
Confidence            543332 22234566666553

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.76  E-value=1.3e-16  Score=161.35  Aligned_cols=235  Identities=11%  Similarity=0.071  Sum_probs=171.6

Q ss_pred             CCceeeCCCCCCEEEEEe-cccEEEEEcCCCceeecc--------------------cCCcceEEEEEEcCCCEEEEEEC
Q psy952            6 ESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVH--------------------QDLLNVVAMDFHYKENRFYFADV   64 (573)
Q Consensus         6 g~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~--------------------~~~~~~~~v~~d~~~~~ly~~d~   64 (573)
                      +....+.+....+|++.. .+.|++++.++..+....                    .....|.+|++++.+++||++|.
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            344444432222244333 468999988775544321                    11246999999976899999998


Q ss_pred             CCCeEEEEEcCCCcceEEEcC----CCCCcceeEEeecCCcEEEEeCC-----------------CCeEEEEEcCCCcee
Q psy952           65 AAKTIYRSRVGSTEKERVIRH----DSHGLEGLAVDWVGRKLYWLDRH-----------------SKQLDVAELDGTNRK  123 (573)
Q Consensus        65 ~~~~I~~~~~~g~~~~~i~~~----~~~~p~glavD~~~~~LY~td~~-----------------~~~I~~~~ldg~~~~  123 (573)
                      .. .|+++++++...+.+...    .+..|.+|++|...++||++|..                 .+.|.+++.++...+
T Consensus       100 ~~-~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~  178 (322)
T 2fp8_A          100 YY-HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETT  178 (322)
T ss_dssp             TT-EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEE
T ss_pred             CC-CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEE
Confidence            75 488998876555544321    24579999999746799999965                 267999998876666


Q ss_pred             EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC---CcEEEEecCCCCCCCceEEEeccCCeEEEEeCC----
Q psy952          124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS---NFTRILTHEDDIAWPNALTLDYFTERLYWADAH----  196 (573)
Q Consensus       124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~---~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~----  196 (573)
                      ++...+..|.+|++++..++||+++.. ..+|.++++++.   ..+++.  .  +..|.||++|. +++||+++..    
T Consensus       179 ~~~~~~~~p~gia~~~dg~~lyv~d~~-~~~I~~~~~~~~~~~~~~~~~--~--~~gP~gi~~d~-~G~l~va~~~~~~~  252 (322)
T 2fp8_A          179 LLLKELHVPGGAEVSADSSFVLVAEFL-SHQIVKYWLEGPKKGTAEVLV--K--IPNPGNIKRNA-DGHFWVSSSEELDG  252 (322)
T ss_dssp             EEEEEESCCCEEEECTTSSEEEEEEGG-GTEEEEEESSSTTTTCEEEEE--E--CSSEEEEEECT-TSCEEEEEEEETTS
T ss_pred             EeccCCccCcceEECCCCCEEEEEeCC-CCeEEEEECCCCcCCccceEE--e--CCCCCCeEECC-CCCEEEEecCcccc
Confidence            666778889999999977789999964 578999999873   334444  2  22299999996 5689999876    


Q ss_pred             ------CCeEEEEeCCCCcEEEEEeCC--ccceeEEEeeeCCeEEEecCCCCceEEEec
Q psy952          197 ------LDYIASVDLDGKHKHIVISGQ--KVPHVFALTLFEDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       197 ------~~~I~~~~~dG~~~~~l~~~~--~~~~p~~ia~~~~~lywtd~~~~~I~~~~~  247 (573)
                            .+.|.+++.+|...+.+....  .+..|.+++..+++||+++...+.|.+++.
T Consensus       253 ~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          253 NMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             STTSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC
T ss_pred             cccCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEec
Confidence                  568999999987776665421  146788888889999999999999999874

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.74  E-value=1.3e-18  Score=136.64  Aligned_cols=76  Identities=46%  Similarity=1.029  Sum_probs=68.6

Q ss_pred             CCCCCCCceecCCCcccCCCcccCCCCCCCCCCCC-CCCccCCcCCCC-CCcCCCCCCCccccCCccccCCCCCCCCCCC
Q psy952          408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE-PAYMCRQRNCTK-GWERCPGKTNYRCIPKWLFCDGKDDCRDGSD  485 (573)
Q Consensus       408 ~~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE-~~~~C~~~~C~~-~~~~C~~~~~~~c~~~~~~Cdg~~dC~d~sD  485 (573)
                      ..|.++ +|+|.+|+|||..|+|||..||.|+||| .+  |....|.+ ++|+|.   +++||+..|+|||+.||.||||
T Consensus         3 ~~C~~~-~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~--C~~~~C~~~~~f~C~---~g~CI~~~~~CDG~~DC~DgSD   76 (82)
T 2fyj_A            3 RTCPPN-QFSCASGRCIPISWTCDLDDDCGDRSDESAS--CAYPTCFPLTQFTCN---NGRCININWRCDNDNDCGDNSD   76 (82)
T ss_dssp             SSSCTT-EEETTSSCEEETTSSSSCSSSSCSTTTTTSS--CCCSSSCSSSEEECT---TSCEEETTCBSSSSBCCSSSSS
T ss_pred             CCCCCC-ceEeCCCCEEeccccCCCcccCCCccccccc--cccccCCCCCceECC---CCCeEcHHHccCCCCcCCCCcc
Confidence            357777 9999999999999999999999999999 55  87777965 899998   6899999999999999999999


Q ss_pred             CCCCCC
Q psy952          486 ELPQNC  491 (573)
Q Consensus       486 e~~~~C  491 (573)
                      |  .+|
T Consensus        77 E--~~C   80 (82)
T 2fyj_A           77 E--AGC   80 (82)
T ss_dssp             C--SCC
T ss_pred             c--cCC
Confidence            9  666

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.74  E-value=4.5e-16  Score=154.08  Aligned_cols=220  Identities=12%  Similarity=0.169  Sum_probs=168.3

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc-----CCCCCcceeEEeecCCcEEEEeCC-CCeEEEEE
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR-----HDSHGLEGLAVDWVGRKLYWLDRH-SKQLDVAE  116 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-----~~~~~p~glavD~~~~~LY~td~~-~~~I~~~~  116 (573)
                      .+..|.+|++++ ++.||+++...+.|+++++++.....+..     ..+..|.+|+++...++||+++.. .+.|.+++
T Consensus        28 ~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECC-CCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            456799999996 46799999999999999998765444322     124689999997678999999964 78999999


Q ss_pred             cCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC
Q psy952          117 LDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA  195 (573)
Q Consensus       117 ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~  195 (573)
                      .+|.....+. ..+..|++|++++ .|.||+++.. ...|.+.+.+|.....+.. ...+..|++|++|+ +++||+++.
T Consensus       107 ~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~~-~~~~~~p~~i~~~~-~g~l~v~~~  182 (286)
T 1q7f_A          107 QYGQFVRKFGATILQHPRGVTVDN-KGRIIVVECK-VMRVIIFDQNGNVLHKFGC-SKHLEFPNGVVVND-KQEIFISDN  182 (286)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECT-TSCEEEEETT-TTEEEEECTTSCEEEEEEC-TTTCSSEEEEEECS-SSEEEEEEG
T ss_pred             CCCcEEEEecCccCCCceEEEEeC-CCCEEEEECC-CCEEEEEcCCCCEEEEeCC-CCccCCcEEEEECC-CCCEEEEEC
Confidence            8888776664 3566799999999 5789999854 5789999998876555541 24567899999996 578999999


Q ss_pred             CCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCC-ceEEEeccCCcceEEEcccC--CCceeeee
Q psy952          196 HLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTK-SINRADKFNGRDYRVLRNTT--HRPYDIHV  268 (573)
Q Consensus       196 ~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~-~I~~~~~~~g~~~~~l~~~~--~~p~~i~v  268 (573)
                      ..+.|.+++.+|.....+.....+..|.+|++. ++.||+++...+ +|.+++ .+|+....+....  ..|.+|++
T Consensus       183 ~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~-~~g~~~~~~~~~~~~~~~~~i~~  258 (286)
T 1q7f_A          183 RAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVAL  258 (286)
T ss_dssp             GGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC-CCCCEEEEEcccCCCCcceeEEE
Confidence            999999999998766555432225789999996 578999999886 999887 4566555554322  23666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.74  E-value=3.9e-16  Score=155.97  Aligned_cols=219  Identities=14%  Similarity=0.136  Sum_probs=165.0

Q ss_pred             ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC
Q psy952           41 HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT  120 (573)
Q Consensus        41 ~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~  120 (573)
                      ......+.|+.|++.++.|||+|...++|+++++++.....+.. . ..|.+|++++.+ +||++.  .+.|.++++++.
T Consensus         9 ~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~-~~~~~i~~~~dG-~l~v~~--~~~l~~~d~~~g   83 (297)
T 3g4e_A            9 PENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTM-D-APVSSVALRQSG-GYVATI--GTKFCALNWKEQ   83 (297)
T ss_dssp             CCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-S-SCEEEEEEBTTS-SEEEEE--TTEEEEEETTTT
T ss_pred             ccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeC-C-CceEEEEECCCC-CEEEEE--CCeEEEEECCCC
Confidence            34566789999999999999999999999999998765544332 2 579999999754 588876  468999999866


Q ss_pred             ceeEecc-----CCCCcceEEEeCCCceEEEEecC----------CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEec
Q psy952          121 NRKTLKT-----AIQDPRGITLHPGIGYVYFSSWN----------LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY  185 (573)
Q Consensus       121 ~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~----------~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~  185 (573)
                      ..+.+..     ....|++|++|| .|.||+++.+          ....|++++.+|.... +.   ..+..|+||++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~---~~~~~pngi~~sp  158 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YF---DQVDISNGLDWSL  158 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EE---EEESBEEEEEECT
T ss_pred             cEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Ee---eccccccceEEcC
Confidence            5555542     234589999999 5779998743          2357999988875433 33   5677899999999


Q ss_pred             cCCeEEEEeCCCCeEEEEeCC---CC--cEEEEEeCC-ccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          186 FTERLYWADAHLDYIASVDLD---GK--HKHIVISGQ-KVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       186 ~~~~LYw~D~~~~~I~~~~~d---G~--~~~~l~~~~-~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      +++.|||++...++|++++++   |.  +++++..-. ....|.+|+++ ++.||++.+..++|.++++.+|+....+..
T Consensus       159 dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          159 DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL  238 (297)
T ss_dssp             TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred             CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence            889999999999999999874   32  234444321 13589999996 578999999999999999888887776655


Q ss_pred             cCCCceeeeee
Q psy952          259 TTHRPYDIHVY  269 (573)
Q Consensus       259 ~~~~p~~i~v~  269 (573)
                      ....|..+++-
T Consensus       239 p~~~~t~~~f~  249 (297)
T 3g4e_A          239 PVDKTTSCCFG  249 (297)
T ss_dssp             SSSBEEEEEEE
T ss_pred             CCCCceEEEEe
Confidence            44556665543

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.74  E-value=2.7e-19  Score=139.49  Aligned_cols=78  Identities=41%  Similarity=0.988  Sum_probs=66.4

Q ss_pred             CCCCCCcCCCCCCCccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccccCCCCCCCcCCCce
Q psy952          451 NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHL  530 (573)
Q Consensus       451 ~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d~sDe~~~~C~~c~~~~~Cd~~~dC~dg~~~de~~~~C~~~~~C~~~~f  530 (573)
                      .|.+++|+|.   +++|||..|+|||+.||.|||||  .+                            | ....|.+.+|
T Consensus         2 ~C~~~~F~C~---~g~CI~~~~~CDg~~DC~DgSDE--~~----------------------------C-~~~~C~~~~f   47 (80)
T 2fcw_B            2 TCSQAEFRCH---DGKCISRQFVCDSDRDCLDGSDE--AS----------------------------C-PVLTCGPASF   47 (80)
T ss_dssp             CCCTTEEECT---TSCEEEGGGTTSSSCCSTTCTTT--TT----------------------------H-HHHHCCTTEE
T ss_pred             CCCCCccCCC---CCCEEeeecccCCcccCCCcccc--cc----------------------------c-ccccCCceee
Confidence            4788999998   68999999999999999999999  33                            3 1235678899


Q ss_pred             eeCCCCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          531 KCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       531 ~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      +|.++ +|||..|+|||..||.|||||.+.+|.
T Consensus        48 ~C~~g-~Ci~~~~~CDg~~DC~dgsDE~~~~C~   79 (80)
T 2fcw_B           48 QCNSS-TCIPQLWACDNDPDCEDGSDEWPQRCR   79 (80)
T ss_dssp             ECTTS-CEEEGGGTTSSSCCSTTCGGGCGGGC-
T ss_pred             ECCCC-CEEecccccCCCcCCCCCCCcCcccCC
Confidence            99998 999999999999999999999544774

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.74  E-value=2.3e-18  Score=135.36  Aligned_cols=78  Identities=46%  Similarity=0.932  Sum_probs=66.4

Q ss_pred             cCCCCCCcCCCCCCCccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccccCCCCCCCcCC-C
Q psy952          450 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPP-H  528 (573)
Q Consensus       450 ~~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d~sDe~~~~C~~c~~~~~Cd~~~dC~dg~~~de~~~~C~~~~~C~~-~  528 (573)
                      ..|.+++|+|.   +++|||..|+|||+.||.|||||. .+                            | ....|.+ .
T Consensus         3 ~~C~~~~f~C~---~g~Ci~~~~~CDg~~DC~DgsDE~-~~----------------------------C-~~~~C~~~~   49 (82)
T 2fyj_A            3 RTCPPNQFSCA---SGRCIPISWTCDLDDDCGDRSDES-AS----------------------------C-AYPTCFPLT   49 (82)
T ss_dssp             SSSCTTEEETT---SSCEEETTSSSSCSSSSCSTTTTT-SS----------------------------C-CCSSSCSSS
T ss_pred             CCCCCCceEeC---CCCEEeccccCCCcccCCCccccc-cc----------------------------c-ccccCCCCC
Confidence            35888999998   689999999999999999999992 11                            3 2235644 8


Q ss_pred             ceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          529 HLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       529 ~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      +|+|.++ +||+..|+|||..||.|||||.  +|.
T Consensus        50 ~f~C~~g-~CI~~~~~CDG~~DC~DgSDE~--~C~   81 (82)
T 2fyj_A           50 QFTCNNG-RCININWRCDNDNDCGDNSDEA--GCS   81 (82)
T ss_dssp             EEECTTS-CEEETTCBSSSSBCCSSSSSCS--CCC
T ss_pred             ceECCCC-CeEcHHHccCCCCcCCCCcccc--CCC
Confidence            9999999 9999999999999999999998  775

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.74  E-value=2.6e-15  Score=148.77  Aligned_cols=249  Identities=15%  Similarity=0.169  Sum_probs=178.5

Q ss_pred             ceeeCCCCCCEEEEEec--ccEEEEEcCCCceee-cc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE
Q psy952            8 TCKRRDSIKPWLIFSNK--YYVRNMSLDATQYSL-VH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI   83 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~~--~~I~~i~l~g~~~~~-~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~   83 (573)
                      ...+.+ +...|+++..  +.|.++++++ .+.. .. .....|.+|++|+ ++.||+++...+.|++++.++.. +.+.
T Consensus        18 ~~i~~d-~~g~l~v~~~~~~~v~~~d~~~-~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~-~~~~   93 (299)
T 2z2n_A           18 YGITVS-DKGKVWITQHKANMISCINLDG-KITEYPLPTPDAKVMCLTISS-DGEVWFTENAANKIGRITKKGII-KEYT   93 (299)
T ss_dssp             EEEEEC-TTSCEEEEETTTTEEEEECTTC-CEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTSCE-EEEE
T ss_pred             cceEEC-CCCCEEEEecCCCcEEEEcCCC-CeEEecCCcccCceeeEEECC-CCCEEEeCCCCCeEEEECCCCcE-EEEe
Confidence            344433 3455666663  6799999884 3332 22 2346799999996 67899999888899999987543 3232


Q ss_pred             -cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952           84 -RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus        84 -~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                       ......|.+|++|. .++||+++...+.|.+++++|....... .....|.+|++++ .|.||+++.. ...|.+.+.+
T Consensus        94 ~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~  170 (299)
T 2z2n_A           94 LPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFITLGS-DNALWFTENQ-NNAIGRITES  170 (299)
T ss_dssp             CSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSCEEEEETT-TTEEEEECTT
T ss_pred             CCCcCCCceeeEECC-CCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCC-CCEEEEEcCC
Confidence             22356899999996 6789999988889999999776654433 3556799999998 5799999853 5689999986


Q ss_pred             CCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCC
Q psy952          162 GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTK  240 (573)
Q Consensus       162 G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~  240 (573)
                      |.......  ...+..|.+|++|+ +++||+++...+.|.+++.+|.......... ...|.+|++. ++.||++++..+
T Consensus       171 g~~~~~~~--~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~  246 (299)
T 2z2n_A          171 GDITEFKI--PTPASGPVGITKGN-DDALWFVEIIGNKIGRITTSGEITEFKIPTP-NARPHAITAGAGIDLWFTEWGAN  246 (299)
T ss_dssp             CCEEEEEC--SSTTCCEEEEEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSST-TCCEEEEEECSTTCEEEEETTTT
T ss_pred             CcEEEeeC--CCCCCcceeEEECC-CCCEEEEccCCceEEEECCCCcEEEEECCCC-CCCceeEEECCCCCEEEeccCCc
Confidence            65443323  44567899999995 4779999998899999999665433222222 5689999996 568999999999


Q ss_pred             ceEEEeccCCcceEE-EcccCCCceeeee
Q psy952          241 SINRADKFNGRDYRV-LRNTTHRPYDIHV  268 (573)
Q Consensus       241 ~I~~~~~~~g~~~~~-l~~~~~~p~~i~v  268 (573)
                      .|.+++. ++..... +......|.+|++
T Consensus       247 ~i~~~d~-~g~~~~~~~~~~~~~~~~i~~  274 (299)
T 2z2n_A          247 KIGRLTS-NNIIEEYPIQIKSAEPHGICF  274 (299)
T ss_dssp             EEEEEET-TTEEEEEECSSSSCCEEEEEE
T ss_pred             eEEEECC-CCceEEEeCCCCCCccceEEe
Confidence            9999987 5543332 2233456777776

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.74  E-value=1.5e-16  Score=160.81  Aligned_cols=206  Identities=14%  Similarity=0.121  Sum_probs=155.4

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-------------------CCCCcceeEEeecCCcEE
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-------------------DSHGLEGLAVDWVGRKLY  103 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-------------------~~~~p~glavD~~~~~LY  103 (573)
                      .+..|.+|++|+. +.+||++...++|++++.++...+.+...                   ....|.||++|...++||
T Consensus        17 ~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~   95 (322)
T 2fp8_A           17 PSYAPNSFTFDST-NKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY   95 (322)
T ss_dssp             SSSCCCCEECCTT-CSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred             ccCCceEEEEcCC-CCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence            3567999999974 77888899999999999887555444321                   124799999997678999


Q ss_pred             EEeCCCCeEEEEEcCCCceeEecc-----CCCCcceEEEeCCCceEEEEecCC----------------cCeEEEEeccC
Q psy952          104 WLDRHSKQLDVAELDGTNRKTLKT-----AIQDPRGITLHPGIGYVYFSSWNL----------------QAYIGKIGMDG  162 (573)
Q Consensus       104 ~td~~~~~I~~~~ldg~~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~~----------------~~~I~r~~ldG  162 (573)
                      +++... .|.++++++...+++..     .+..|.+|++|+..|.||+++...                ...|++.+.++
T Consensus        96 v~d~~~-~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           96 IVDCYY-HLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEETTT-EEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEECCC-CEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            999764 58889988665555542     345699999998567999999642                25789988876


Q ss_pred             CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC---cEEEEEeCCccceeEEEeeeC-CeEEEecCC
Q psy952          163 SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGK---HKHIVISGQKVPHVFALTLFE-DHIYWTDWN  238 (573)
Q Consensus       163 ~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~---~~~~l~~~~~~~~p~~ia~~~-~~lywtd~~  238 (573)
                      ...+.+.   ..+..|+||++++.+++||++|...++|.++++++.   ..+++...  .. |.+|+++. +.||++++.
T Consensus       175 ~~~~~~~---~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~--~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          175 KETTLLL---KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI--PN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TEEEEEE---EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC--SS-EEEEEECTTSCEEEEEEE
T ss_pred             CEEEEec---cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC--CC-CCCeEECCCCCEEEEecC
Confidence            5555544   457889999999888889999999999999999873   34444432  23 99999964 689999876


Q ss_pred             ----------CCceEEEeccCCcceEEEc
Q psy952          239 ----------TKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       239 ----------~~~I~~~~~~~g~~~~~l~  257 (573)
                                .++|.+++. +|+....+.
T Consensus       249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~  276 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDE-FGNILEVIP  276 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECT-TSCEEEEEE
T ss_pred             cccccccCCCccEEEEECC-CCCEEEEEE
Confidence                      567888885 566555553

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=1e-15  Score=155.30  Aligned_cols=243  Identities=10%  Similarity=0.075  Sum_probs=174.6

Q ss_pred             EEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-----CCc
Q psy952           18 WLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-----HGL   90 (573)
Q Consensus        18 ~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-----~~p   90 (573)
                      .|+++.  .+.|.++++...+....+.....|.+|++++. ++||+++...+.|.++++.+......+..+.     ..|
T Consensus        55 ~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p  133 (328)
T 3dsm_A           55 IGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGST  133 (328)
T ss_dssp             EEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBC
T ss_pred             EEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCc
Confidence            455554  36799999876554333355678999999765 5999999778899999997655443333331     289


Q ss_pred             ceeEEeecCCcEEEEeCC-CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC---------cCeEEEEec
Q psy952           91 EGLAVDWVGRKLYWLDRH-SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL---------QAYIGKIGM  160 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~-~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~---------~~~I~r~~l  160 (573)
                      .+|++  .+++||+++.+ .+.|.++++........+.....|.+|+++| .|.||++..+.         ...|.++++
T Consensus       134 ~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~  210 (328)
T 3dsm_A          134 EQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDA  210 (328)
T ss_dssp             CCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEET
T ss_pred             ceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEEC
Confidence            99999  48999999984 7899999997654443344456799999999 57799998653         268999988


Q ss_pred             cCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEE--EEEeCCccceeEEEeee--CCeEEEec
Q psy952          161 DGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH--IVISGQKVPHVFALTLF--EDHIYWTD  236 (573)
Q Consensus       161 dG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~--~l~~~~~~~~p~~ia~~--~~~lywtd  236 (573)
                      ........+. ......|++|++++++++||+++.   .|++++.......  .++... ...|.+|++.  +++||+++
T Consensus       211 ~t~~v~~~~~-~~~g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          211 ETFTVEKQFK-FKLGDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             TTTEEEEEEE-CCTTCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEEEE
T ss_pred             CCCeEEEEEe-cCCCCCceeEEEecCCCEEEEEcc---EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEEEc
Confidence            7443332221 222358999999999999999986   8999998754431  111111 3579999994  68999999


Q ss_pred             ----CCCCceEEEeccCCcceEEEcccCCCceeeeeeec
Q psy952          237 ----WNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP  271 (573)
Q Consensus       237 ----~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~  271 (573)
                          +.+++|.+++.. |+....+..+ ..|.+|+.-|.
T Consensus       286 ~~~y~~~~~V~v~d~~-g~~~~~i~~G-~~P~~~~~~~~  322 (328)
T 3dsm_A          286 AIDYQQQGIVYRYSPQ-GKLIDEFYVG-IIPGAFCWKLE  322 (328)
T ss_dssp             CTTSSSEEEEEEECTT-CCEEEEEEEE-ESEEEEEEECC
T ss_pred             ccccccCCEEEEECCC-CCEEEEEEec-cCcceEEEecc
Confidence                788999999875 8777766543 36777665443

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.73  E-value=4e-19  Score=138.54  Aligned_cols=77  Identities=45%  Similarity=1.013  Sum_probs=69.5

Q ss_pred             CCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCCCccccCCccccCCCCCCCCCCCCCC
Q psy952          409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELP  488 (573)
Q Consensus       409 ~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d~sDe~~  488 (573)
                      .|.++ +|+|.+|+|||..|+|||..||.|+|||.+  |....|.+++|+|.   +++|||..|+|||+.||.|||||.+
T Consensus         2 ~C~~~-~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~--C~~~~C~~~~f~C~---~g~Ci~~~~~CDg~~DC~dgsDE~~   75 (80)
T 2fcw_B            2 TCSQA-EFRCHDGKCISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCN---SSTCIPQLWACDNDPDCEDGSDEWP   75 (80)
T ss_dssp             CCCTT-EEECTTSCEEEGGGTTSSSCCSTTCTTTTT--HHHHHCCTTEEECT---TSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             CCCCC-ccCCCCCCEEeeecccCCcccCCCcccccc--cccccCCceeeECC---CCCEEecccccCCCcCCCCCCCcCc
Confidence            46677 999999999999999999999999999987  77667999999998   6899999999999999999999955


Q ss_pred             CCC
Q psy952          489 QNC  491 (573)
Q Consensus       489 ~~C  491 (573)
                      .+|
T Consensus        76 ~~C   78 (80)
T 2fcw_B           76 QRC   78 (80)
T ss_dssp             GGC
T ss_pred             ccC
Confidence            555

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.71  E-value=3e-15  Score=148.38  Aligned_cols=222  Identities=12%  Similarity=0.119  Sum_probs=165.0

Q ss_pred             CCEEEEEec--ccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcce
Q psy952           16 KPWLIFSNK--YYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEG   92 (573)
Q Consensus        16 ~~~l~~s~~--~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~g   92 (573)
                      ...|+++..  +.|++++.++........ ....|.+|++|+ +++||+++...+.|++++.++......+......|.+
T Consensus        72 ~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~  150 (300)
T 2qc5_A           72 LGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAF  150 (300)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEE
T ss_pred             CCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCcee
Confidence            345666653  679999888543323222 346799999995 6789999988889999999854333223334578999


Q ss_pred             eEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec
Q psy952           93 LAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH  171 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~  171 (573)
                      |++|. .++||+++...+.|.+++++|....... .....|.+|++++ .|.||+++.. ...|.+.+.+|.......  
T Consensus       151 i~~d~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~--  225 (300)
T 2qc5_A          151 ITLGS-DNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGN-DGALWFVEIM-GNKIGRITTTGEISEYDI--  225 (300)
T ss_dssp             EEECT-TSSEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETT-TTEEEEECTTCCEEEEEC--
T ss_pred             EEECC-CCCEEEEecCCCeEEEECCCCcEEEeeCCCCCCCcceEEECC-CCCEEEEccC-CCEEEEEcCCCcEEEEEC--
Confidence            99996 4569999988889999999776654333 3566799999998 6799999854 567999999776544333  


Q ss_pred             CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEec
Q psy952          172 EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       172 ~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~  247 (573)
                      ...+..|.+|++|+. ++||+++...+.|.+++.+|.......... ...|.+|++. ++.||+++. + .|.+++.
T Consensus       226 ~~~~~~~~~i~~d~~-g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          226 PTPNARPHAITAGKN-SEIWFTEWGANQIGRITNDNTIQEYQLQTE-NAEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             SSTTCCEEEEEECST-TCEEEEETTTTEEEEECTTSCEEEEECCST-TCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             CCCCCCceEEEECCC-CCEEEeccCCCeEEEECCCCcEEEEECCcc-CCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence            456778999999964 679999998899999999775443322222 5679999996 578999998 5 8888864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.70  E-value=2.8e-15  Score=149.33  Aligned_cols=221  Identities=13%  Similarity=0.140  Sum_probs=165.0

Q ss_pred             cCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCe
Q psy952           32 LDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQ  111 (573)
Q Consensus        32 l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~  111 (573)
                      ..+..++.+...+..+.+++||+.++.|||++...+.|+++++++. ...+. .....|.+|++|+ .++||+++...+.
T Consensus        15 ~~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~-~~~~~~~~l~~~~-dg~l~v~~~~~~~   91 (296)
T 3e5z_A           15 PAGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEM-HPSHHQNGHCLNK-QGHLIACSHGLRR   91 (296)
T ss_dssp             CTTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEE-SSCSSEEEEEECT-TCCEEEEETTTTE
T ss_pred             CCCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEE-CCCCCcceeeECC-CCcEEEEecCCCe
Confidence            3455667777778889999999988889999999999999999887 54443 3446899999997 5679999988889


Q ss_pred             EEEEEc-CCCceeEecc-----CCCCcceEEEeCCCceEEEEecC----------------CcCeEEEEeccCCCcEEEE
Q psy952          112 LDVAEL-DGTNRKTLKT-----AIQDPRGITLHPGIGYVYFSSWN----------------LQAYIGKIGMDGSNFTRIL  169 (573)
Q Consensus       112 I~~~~l-dg~~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~----------------~~~~I~r~~ldG~~~~~l~  169 (573)
                      |.++++ +|.. +.+..     ....|++|+++| .|.||+++..                ....|++++.+|.. ..+.
T Consensus        92 i~~~d~~~g~~-~~~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~  168 (296)
T 3e5z_A           92 LERQREPGGEW-ESIADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL-SAPI  168 (296)
T ss_dssp             EEEECSTTCCE-EEEECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCE-EEEE
T ss_pred             EEEEcCCCCcE-EEEeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCCE-EEee
Confidence            999999 5554 33331     245689999999 7889998741                13489999888543 3333


Q ss_pred             ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC--CCc---EEEEEeCCccceeEEEeee-CCeEEEecCCCCceE
Q psy952          170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD--GKH---KHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSIN  243 (573)
Q Consensus       170 ~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d--G~~---~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~  243 (573)
                         ..+..|++|++++++..| |++...++|++++++  |..   .+++ ... ...|.+|+++ ++.||++.  .+.|.
T Consensus       169 ---~~~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~-~~~p~~i~~d~~G~l~v~~--~~~v~  240 (296)
T 3e5z_A          169 ---RDRVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVE-PGKTDGLRVDAGGLIWASA--GDGVH  240 (296)
T ss_dssp             ---CCCSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCS-SSCCCSEEEBTTSCEEEEE--TTEEE
T ss_pred             ---cCCCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCC-CCCCCeEEECCCCCEEEEc--CCeEE
Confidence               677889999999877777 999999999999985  433   3344 322 5678999996 57899888  67899


Q ss_pred             EEeccCCcceEEEcccCCCceeeee
Q psy952          244 RADKFNGRDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       244 ~~~~~~g~~~~~l~~~~~~p~~i~v  268 (573)
                      ++++ .|+....+..... |..++.
T Consensus       241 ~~~~-~g~~~~~~~~~~~-~~~~~f  263 (296)
T 3e5z_A          241 VLTP-DGDELGRVLTPQT-TSNLCF  263 (296)
T ss_dssp             EECT-TSCEEEEEECSSC-CCEEEE
T ss_pred             EECC-CCCEEEEEECCCC-ceeEEE
Confidence            9986 4665555543333 555543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=1.1e-14  Score=144.08  Aligned_cols=226  Identities=12%  Similarity=0.101  Sum_probs=162.9

Q ss_pred             CCEEEEEe--cccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcce
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEG   92 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~g   92 (573)
                      ...|+++.  ...|+++++++........ ....|.+|++|+ +++||+++...+.|+++++++.............|.+
T Consensus        67 ~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~  145 (299)
T 2z2n_A           67 DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITDDGKIREYELPNKGSYPSF  145 (299)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEE
T ss_pred             CCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECCCCCEEEecCCCCCCCCce
Confidence            34556665  3578999887543222222 456799999996 6789999988889999998654433223334568999


Q ss_pred             eEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec
Q psy952           93 LAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH  171 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~  171 (573)
                      |++|. .++||+++...+.|.+++++|....... .....|.+|++++ .|.||+++.. ...|.+.+.+|.......  
T Consensus       146 i~~~~-~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~-~~~i~~~~~~g~~~~~~~--  220 (299)
T 2z2n_A          146 ITLGS-DNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGN-DDALWFVEII-GNKIGRITTSGEITEFKI--  220 (299)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECT-TSSEEEEETT-TTEEEEECTTCCEEEEEC--
T ss_pred             EEEcC-CCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECC-CCCEEEEccC-CceEEEECCCCcEEEEEC--
Confidence            99996 5689999988889999999666544323 4566799999998 4789999854 568999998665433222  


Q ss_pred             CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCC
Q psy952          172 EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       172 ~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g  250 (573)
                      ......|.+|++|+ +++||+++...+.|.+++.+|.......... ...|.+|++.++.||+++. .+.|.+++..++
T Consensus       221 ~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~-~~~~~~i~~~~g~l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          221 PTPNARPHAITAGA-GIDLWFTEWGANKIGRLTSNNIIEEYPIQIK-SAEPHGICFDGETIWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             SSTTCCEEEEEECS-TTCEEEEETTTTEEEEEETTTEEEEEECSSS-SCCEEEEEECSSCEEEEET-TTEEEEEEEC--
T ss_pred             CCCCCCceeEEECC-CCCEEEeccCCceEEEECCCCceEEEeCCCC-CCccceEEecCCCEEEEec-CCcEEEEEcCcc
Confidence            34567899999995 4779999988899999999764332222222 5689999996678999976 578888875443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.68  E-value=2.3e-15  Score=154.15  Aligned_cols=207  Identities=15%  Similarity=0.096  Sum_probs=149.8

Q ss_pred             CCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE-----cCCCCCcceeEEeec---CCcEEEE
Q psy952           34 ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI-----RHDSHGLEGLAVDWV---GRKLYWL  105 (573)
Q Consensus        34 g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~-----~~~~~~p~glavD~~---~~~LY~t  105 (573)
                      ....++++.++..|.+|++++ +++||+++.. ++|++++ +|. .+.+.     ..+...|.|||+++.   ++.||++
T Consensus        20 ~~~~~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~i~-~g~-~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~   95 (352)
T 2ism_A           20 GLRVEEVVGGLEVPWALAFLP-DGGMLIAERP-GRIRLFR-EGR-LSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAY   95 (352)
T ss_dssp             CCCEEEEECCCSCEEEEEECT-TSCEEEEETT-TEEEEEE-TTE-EEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred             CcEEEEEECCCCCceEEEEcC-CCeEEEEeCC-CeEEEEE-CCC-ccEeecceEeecCCCCceeEEECCCCCCCCEEEEE
Confidence            345667778899999999997 4679999986 8999998 654 23232     234678999999986   7899999


Q ss_pred             eCCC-----CeEEEEEcCCC---ceeEecc-------CCCCcceEEEeCCCceEEEEecC------------CcCeEEEE
Q psy952          106 DRHS-----KQLDVAELDGT---NRKTLKT-------AIQDPRGITLHPGIGYVYFSSWN------------LQAYIGKI  158 (573)
Q Consensus       106 d~~~-----~~I~~~~ldg~---~~~~l~~-------~~~~P~~Iavdp~~g~LYwtd~~------------~~~~I~r~  158 (573)
                      +...     ++|.++++++.   ..++++.       ....|.+|+++| .|+||++...            ...+|.|+
T Consensus        96 ~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri  174 (352)
T 2ism_A           96 RTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRL  174 (352)
T ss_dssp             EEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEE
T ss_pred             EecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEE
Confidence            8753     78999998864   2334432       123589999999 6799999732            12589999


Q ss_pred             eccCC-------------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe--------EEEEeCCCC---------
Q psy952          159 GMDGS-------------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY--------IASVDLDGK---------  208 (573)
Q Consensus       159 ~ldG~-------------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~--------I~~~~~dG~---------  208 (573)
                      +.+|+             ..+++.   ..+..|.||++|+.+++||++|.+.+.        |.++...+.         
T Consensus       175 ~~dG~~p~~npf~~~~~~~~~i~a---~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~  251 (352)
T 2ism_A          175 TPEGEPAPGNPFLGRRGARPEVYS---LGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGR  251 (352)
T ss_dssp             CTTSSBCTTCTTTTCTTSCTTEEE---ECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSC
T ss_pred             cCCCCCCCCCcccCCCCCCccEEE---EcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCC
Confidence            99982             333443   578889999999888999999987765        555543220         


Q ss_pred             -----cEEEEEe-CCccceeEEEeeeCCeEEEecCCCCceEEEeccC
Q psy952          209 -----HKHIVIS-GQKVPHVFALTLFEDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       209 -----~~~~l~~-~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~  249 (573)
                           ....+.. .. ...|.||+++++.||++++..++|.++....
T Consensus       252 ~~~~~~~~p~~~~~~-~~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~  297 (352)
T 2ism_A          252 GNDPRYRDPLYFWPQ-GFPPGNLAFFRGDLYVAGLRGQALLRLVLEG  297 (352)
T ss_dssp             CCCTTSCCCSEECTT-CCCEEEEEEETTEEEEEETTTTEEEEEEEEE
T ss_pred             CCCCCCcCCeEecCC-CCCCcceEEECCEEEEEECCCCEEEEEEECC
Confidence                 0001111 11 3469999999999999999999999987543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.68  E-value=4.4e-15  Score=149.07  Aligned_cols=213  Identities=12%  Similarity=0.034  Sum_probs=153.0

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCC--eEEEEEcCCCce
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSK--QLDVAELDGTNR  122 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~--~I~~~~ldg~~~  122 (573)
                      ..|.++++|+ +++|||+|...++|++++.++... .++..+ ..|.+|+++.. ++||+++...+  +|.+++......
T Consensus        32 ~~pegia~~~-~g~lyv~d~~~~~I~~~d~~g~~~-~~~~~~-~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           32 TFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQ-IHATVE-GKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEE-EEEECS-SEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECC-CCCEEEEeCCCCeEEEECCCCceE-EEEeCC-CCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCeE
Confidence            5799999997 677999999999999999987543 333333 58999999965 56999996543  588887654444


Q ss_pred             eEec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEE-Ee-------cCCCCCCCceEEEeccCCeEEE
Q psy952          123 KTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI-LT-------HEDDIAWPNALTLDYFTERLYW  192 (573)
Q Consensus       123 ~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l-~~-------~~~~l~~P~glaiD~~~~~LYw  192 (573)
                      +.+.  .....|.++++.+ .+.+|+++.. ...|++++.++...++. ..       ....+..|+||  ++++++||+
T Consensus       108 ~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~-~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv  183 (306)
T 2p4o_A          108 ETLLTLPDAIFLNGITPLS-DTQYLTADSY-RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV  183 (306)
T ss_dssp             EEEEECTTCSCEEEEEESS-SSEEEEEETT-TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred             EEEEeCCCccccCcccccC-CCcEEEEECC-CCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence            4443  3455688999865 6789999954 56899999875432222 10       02356789998  555889999


Q ss_pred             EeCCCCeEEEEeCCC--C--cEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEE--EcccCCCcee
Q psy952          193 ADAHLDYIASVDLDG--K--HKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRV--LRNTTHRPYD  265 (573)
Q Consensus       193 ~D~~~~~I~~~~~dG--~--~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~--l~~~~~~p~~  265 (573)
                      +|...++|.++++++  .  .++++..   +..|.+|+++ ++.||++++..++|.+++. +|+...+  +......|.+
T Consensus       184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~-~G~~~~~~~~~~~~~~p~~  259 (306)
T 2p4o_A          184 SNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRSTTIIAQAEQGVIGSTA  259 (306)
T ss_dssp             EETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECT-TCCEEEEECGGGTCTTEEE
T ss_pred             EeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECC-CCCEEEEeecccccCCceE
Confidence            999999999999985  2  2344443   3579999996 5789999999999999985 4654332  2233456777


Q ss_pred             eeee
Q psy952          266 IHVY  269 (573)
Q Consensus       266 i~v~  269 (573)
                      +++-
T Consensus       260 ~a~~  263 (306)
T 2p4o_A          260 VAFG  263 (306)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            6653

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.66  E-value=1.7e-14  Score=144.53  Aligned_cols=212  Identities=14%  Similarity=0.179  Sum_probs=157.1

Q ss_pred             CCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeE
Q psy952           33 DATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQL  112 (573)
Q Consensus        33 ~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I  112 (573)
                      .+..++.+..++..+.+++|++.++.|||++...+.|++++.+|. .+.+.. ....|.+|++|+ .++||+++...+.|
T Consensus        33 ~~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~~~~-~~~~~~gl~~d~-dG~l~v~~~~~~~v  109 (305)
T 3dr2_A           33 GDARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDVLLD-ATAFTNGNAVDA-QQRLVHCEHGRRAI  109 (305)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEEEEE-SCSCEEEEEECT-TSCEEEEETTTTEE
T ss_pred             CCCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEEEeC-CCCccceeeECC-CCCEEEEECCCCEE
Confidence            355667777888889999999988999999999999999998654 333333 346899999997 46799999888899


Q ss_pred             EEEEcCCCceeEecc-----CCCCcceEEEeCCCceEEEEec--CC--------------cCeEEEEeccCCCcEEEEec
Q psy952          113 DVAELDGTNRKTLKT-----AIQDPRGITLHPGIGYVYFSSW--NL--------------QAYIGKIGMDGSNFTRILTH  171 (573)
Q Consensus       113 ~~~~ldg~~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~--~~--------------~~~I~r~~ldG~~~~~l~~~  171 (573)
                      .+++++|.. +++..     .+..|++|++++ .|.||+||.  +.              ...|++++.++...+.+   
T Consensus       110 ~~~~~~g~~-~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~---  184 (305)
T 3dr2_A          110 TRSDADGQA-HLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM---  184 (305)
T ss_dssp             EEECTTSCE-EEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE---
T ss_pred             EEECCCCCE-EEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE---
Confidence            999998764 33332     345699999999 788999873  11              25799998854333332   


Q ss_pred             CCCCCCCceEEEeccCCeEEEEeCCC-----CeEEEEeCCCCc---EEEEEeCCccceeEEEeee-CCeEEEecCCCCce
Q psy952          172 EDDIAWPNALTLDYFTERLYWADAHL-----DYIASVDLDGKH---KHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSI  242 (573)
Q Consensus       172 ~~~l~~P~glaiD~~~~~LYw~D~~~-----~~I~~~~~dG~~---~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I  242 (573)
                      . .+..|+||++++++..|||++...     +.|+++++++..   .+++.... ...|.+|+++ ++.||++.  .+.|
T Consensus       185 ~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-~~~pdgi~~d~~G~lwv~~--~~gv  260 (305)
T 3dr2_A          185 A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-DGLPDGFCVDRGGWLWSSS--GTGV  260 (305)
T ss_dssp             E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-SSCCCSEEECTTSCEEECC--SSEE
T ss_pred             e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-CCCCCeEEECCCCCEEEec--CCcE
Confidence            2 567899999999888999999874     789999887643   23333322 4578999996 56788777  3469


Q ss_pred             EEEeccCCcceEEEc
Q psy952          243 NRADKFNGRDYRVLR  257 (573)
Q Consensus       243 ~~~~~~~g~~~~~l~  257 (573)
                      .++++ +|+....+.
T Consensus       261 ~~~~~-~g~~~~~~~  274 (305)
T 3dr2_A          261 CVFDS-DGQLLGHIP  274 (305)
T ss_dssp             EEECT-TSCEEEEEE
T ss_pred             EEECC-CCCEEEEEE
Confidence            88886 566555443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.65  E-value=6.8e-14  Score=140.31  Aligned_cols=213  Identities=13%  Similarity=0.087  Sum_probs=151.9

Q ss_pred             CCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC--CeEEEEEcCCCcceEEEc-CCCCCc
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA--KTIYRSRVGSTEKERVIR-HDSHGL   90 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~i~~-~~~~~p   90 (573)
                      ...|++++  .+.|++++.++.... .......|.+|++++. ++||+++...  .+|++++......+.+.. .....+
T Consensus        42 ~g~lyv~d~~~~~I~~~d~~g~~~~-~~~~~~~p~gia~~~d-G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~  119 (306)
T 2p4o_A           42 DGTIFVTNHEVGEIVSITPDGNQQI-HATVEGKVSGLAFTSN-GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFL  119 (306)
T ss_dssp             TSCEEEEETTTTEEEEECTTCCEEE-EEECSSEEEEEEECTT-SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCE
T ss_pred             CCCEEEEeCCCCeEEEECCCCceEE-EEeCCCCceeEEEcCC-CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCcccc
Confidence            34577776  578999998875433 3333457999999975 5699999654  358888865554544443 234578


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEe-----------ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-----------KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIG  159 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l-----------~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~  159 (573)
                      .|+++ |..+++|++|...++|+++++++...++.           ...+..|+||  ++..++||+++.. ..+|.+++
T Consensus       120 ~g~~~-~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~-~~~I~~~~  195 (306)
T 2p4o_A          120 NGITP-LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTE-KMLLLRIP  195 (306)
T ss_dssp             EEEEE-SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETT-TTEEEEEE
T ss_pred             Ccccc-cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCC-CCEEEEEE
Confidence            88886 56788999998889999999875422221           1345679998  6667899999965 67899999


Q ss_pred             ccC--C--CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-----CC
Q psy952          160 MDG--S--NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-----ED  230 (573)
Q Consensus       160 ldG--~--~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-----~~  230 (573)
                      +++  .  .++++.    .+..|.||++|+ +++||+++...++|.+++.+|....+......+..|.++++.     ++
T Consensus       196 ~~~~g~~~~~~~~~----~~~~P~gi~vd~-dG~l~va~~~~~~V~~~~~~G~~~~~~~~~~~~~~p~~~a~~g~~~d~~  270 (306)
T 2p4o_A          196 VDSTDKPGEPEIFV----EQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCT  270 (306)
T ss_dssp             BCTTSCBCCCEEEE----ESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred             eCCCCCCCccEEEe----ccCCCCCeEECC-CCCEEEEeCCCCeEEEECCCCCEEEEeecccccCCceEEEEecccCCCC
Confidence            985  2  234444    246899999995 568999999999999999987543321111115689999985     36


Q ss_pred             eEEEecCCC
Q psy952          231 HIYWTDWNT  239 (573)
Q Consensus       231 ~lywtd~~~  239 (573)
                      .||+++...
T Consensus       271 ~LyVt~~~~  279 (306)
T 2p4o_A          271 AIYVVTNGG  279 (306)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEECCCC
Confidence            899998753

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.64  E-value=2.5e-14  Score=146.43  Aligned_cols=206  Identities=16%  Similarity=0.113  Sum_probs=151.1

Q ss_pred             CceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE-----cCCCCCcceeEEeec---CCcEEEEe
Q psy952           35 TQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI-----RHDSHGLEGLAVDWV---GRKLYWLD  106 (573)
Q Consensus        35 ~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~-----~~~~~~p~glavD~~---~~~LY~td  106 (573)
                      -..++++.++..|.+|++++ +++||+++.. ++|++++.+|.  +.+.     ..+...|.|||+++.   ++.||+++
T Consensus        19 ~~~~~va~~l~~P~~ia~~p-dG~l~V~e~~-g~I~~~d~~G~--~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~   94 (354)
T 3a9g_A           19 FKISEVASDLEVPWSIAPLG-GGRYLVTERP-GRLVLISPSGK--KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA   94 (354)
T ss_dssp             EEEEEEECSCSCEEEEEEEE-TTEEEEEETT-TEEEEECSSCE--EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred             eEEEEEeCCCCCCeEEEEcC-CCeEEEEeCC-CEEEEEeCCCc--eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence            34566777889999999997 6789999987 89999976665  3332     234568999999987   78999998


Q ss_pred             CC---C----CeEEEEEcCCC-----ceeEecc-----CCCCcceEEEeCCCceEEEEecC------------CcCeEEE
Q psy952          107 RH---S----KQLDVAELDGT-----NRKTLKT-----AIQDPRGITLHPGIGYVYFSSWN------------LQAYIGK  157 (573)
Q Consensus       107 ~~---~----~~I~~~~ldg~-----~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~------------~~~~I~r  157 (573)
                      ..   .    ++|.++++++.     ..++|+.     ....|.+|+++| .|+||++...            ...+|.|
T Consensus        95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~r  173 (354)
T 3a9g_A           95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILR  173 (354)
T ss_dssp             EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEE
T ss_pred             eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEE
Confidence            63   3    68999998875     2344432     234589999999 6799999632            1358999


Q ss_pred             EeccCC--------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe---EEEEeCCCCc---------------EE
Q psy952          158 IGMDGS--------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY---IASVDLDGKH---------------KH  211 (573)
Q Consensus       158 ~~ldG~--------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~---I~~~~~dG~~---------------~~  211 (573)
                      ++.||+        ..+++.   ..+..|.||++|+.+++||++|.+.+.   |..+.. |.+               ..
T Consensus       174 i~~dG~~p~~npf~~~~i~a---~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~  249 (354)
T 3a9g_A          174 VDEEGRPPADNPFPNSPIWS---YGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVD  249 (354)
T ss_dssp             ECTTSCCCTTSSSTTCCEEE---ECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCC
T ss_pred             EcCCCCCCCCCCCCCCcEEE---EccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcC
Confidence            999997        334444   678999999999888999999988754   555543 221               01


Q ss_pred             EEEe-CCccceeEEEee--------eCCeEEEecCCCCceEEEeccC
Q psy952          212 IVIS-GQKVPHVFALTL--------FEDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       212 ~l~~-~~~~~~p~~ia~--------~~~~lywtd~~~~~I~~~~~~~  249 (573)
                      .+.. ......|.||++        +.+.||++++..++|.++....
T Consensus       250 p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          250 PVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             CSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            1111 011346999999        5789999999999999998543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.61  E-value=8.6e-13  Score=133.76  Aligned_cols=246  Identities=11%  Similarity=0.098  Sum_probs=175.7

Q ss_pred             CEEEEEe--------cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-C
Q psy952           17 PWLIFSN--------KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-S   87 (573)
Q Consensus        17 ~~l~~s~--------~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-~   87 (573)
                      .+|+++.        ...|+++++.+......+.....+.++++++.+++||+++...+.|+.+++.+......+..+ .
T Consensus        53 ~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~  132 (353)
T 3vgz_A           53 NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDR  132 (353)
T ss_dssp             TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCC
T ss_pred             CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCC
Confidence            4667666        347888988766544333334558899999999999999998899999999765543333322 1


Q ss_pred             C--------CcceeEEeecCCcEEEEeC-CCCeEEEEEcCCCceeEecc-CCCCcceEEEeCCCceEEEEecCCcCeEEE
Q psy952           88 H--------GLEGLAVDWVGRKLYWLDR-HSKQLDVAELDGTNRKTLKT-AIQDPRGITLHPGIGYVYFSSWNLQAYIGK  157 (573)
Q Consensus        88 ~--------~p~glavD~~~~~LY~td~-~~~~I~~~~ldg~~~~~l~~-~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r  157 (573)
                      .        .|.++++++.++.||+++. ..+.|.++++........+. ....|.+++++|..++||+++.  ...|.+
T Consensus       133 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~i~~  210 (353)
T 3vgz_A          133 KRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA--DGELIT  210 (353)
T ss_dssp             CCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT--TSEEEE
T ss_pred             ccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC--CCeEEE
Confidence            1        2789999998999999984 56789999997655544444 4456999999999899999984  567888


Q ss_pred             EeccCCCcEEEEecC--CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEE
Q psy952          158 IGMDGSNFTRILTHE--DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIY  233 (573)
Q Consensus       158 ~~ldG~~~~~l~~~~--~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~ly  233 (573)
                      .++........+...  .....|.++++++.+++||+++...+.|..+++........+.   +..|.++++  .+++||
T Consensus       211 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~~~~~~s~dg~~l~  287 (353)
T 3vgz_A          211 IDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA---APESLAVLFNPARNEAY  287 (353)
T ss_dssp             EETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE---CSSCCCEEEETTTTEEE
T ss_pred             EECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE---cCCCceEEECCCCCEEE
Confidence            887654433333100  1234567899999999999999988999999996554433333   234566776  456799


Q ss_pred             EecCCCCceEEEeccCCcceEEEcccCCCceeeee
Q psy952          234 WTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       234 wtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v  268 (573)
                      +++...+.|..++..+++....+... ..|.++++
T Consensus       288 v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~  321 (353)
T 3vgz_A          288 VTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLAL  321 (353)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEE
T ss_pred             EEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEE
Confidence            99999999999998777766555432 24555544

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.61  E-value=9.1e-14  Score=142.29  Aligned_cols=217  Identities=16%  Similarity=0.197  Sum_probs=150.3

Q ss_pred             CCEEEEEec-ccEEEEEcCCCcee-----ecccCCcceEEEEEEcC---CCEEEEEECCC-----CeEEEEEcCCC---c
Q psy952           16 KPWLIFSNK-YYVRNMSLDATQYS-----LVHQDLLNVVAMDFHYK---ENRFYFADVAA-----KTIYRSRVGST---E   78 (573)
Q Consensus        16 ~~~l~~s~~-~~I~~i~l~g~~~~-----~~~~~~~~~~~v~~d~~---~~~ly~~d~~~-----~~I~~~~~~g~---~   78 (573)
                      ..-|+++.. ..|++++ ++....     +...+...|.+|++++.   ++.||+++...     .+|.|+++++.   .
T Consensus        41 dG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~  119 (352)
T 2ism_A           41 DGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVL  119 (352)
T ss_dssp             TSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEE
T ss_pred             CCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCc
Confidence            344666664 6788888 554211     11234567999999987   78999998754     78999998864   2


Q ss_pred             ceEEEc------CCCCCcceeEEeecCCcEEEEeCC-------------CCeEEEEEcCCC-------------ceeEec
Q psy952           79 KERVIR------HDSHGLEGLAVDWVGRKLYWLDRH-------------SKQLDVAELDGT-------------NRKTLK  126 (573)
Q Consensus        79 ~~~i~~------~~~~~p~glavD~~~~~LY~td~~-------------~~~I~~~~ldg~-------------~~~~l~  126 (573)
                      .++++.      ...+.|.+|++++ .++||+++..             .++|.+++.+|+             ..+++.
T Consensus       120 ~~~l~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a  198 (352)
T 2ism_A          120 DRVVLDGIPARPHGLHSGGRIAFGP-DGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYS  198 (352)
T ss_dssp             EEEEEEEECCCTTCCCCCCCEEECT-TSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEE
T ss_pred             eEEEEEeCCCCCCCCcCCceEEECC-CCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEE
Confidence            333332      2346789999997 4599999732             368999999983             344555


Q ss_pred             cCCCCcceEEEeCCCceEEEEecCCcC-------eEEEEeccCC--------------CcEEEEecCCCCCCCceEEEec
Q psy952          127 TAIQDPRGITLHPGIGYVYFSSWNLQA-------YIGKIGMDGS--------------NFTRILTHEDDIAWPNALTLDY  185 (573)
Q Consensus       127 ~~~~~P~~Iavdp~~g~LYwtd~~~~~-------~I~r~~ldG~--------------~~~~l~~~~~~l~~P~glaiD~  185 (573)
                      .++.+|.+|++||..|.||+++.+...       .|.++...+.              ....+.. ......|.||++  
T Consensus       199 ~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~-~~~~~ap~G~~~--  275 (352)
T 2ism_A          199 LGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYF-WPQGFPPGNLAF--  275 (352)
T ss_dssp             ECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEE-CTTCCCEEEEEE--
T ss_pred             EcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEe-cCCCCCCcceEE--
Confidence            688899999999988999999976433       3666544320              0011111 122346889999  


Q ss_pred             cCCeEEEEeCCCCeEEEEeCCCCc-------EEEEEeCCccceeEEEeee-CCeEEEecCCC
Q psy952          186 FTERLYWADAHLDYIASVDLDGKH-------KHIVISGQKVPHVFALTLF-EDHIYWTDWNT  239 (573)
Q Consensus       186 ~~~~LYw~D~~~~~I~~~~~dG~~-------~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~  239 (573)
                      ..+.||+++...++|.++++++..       ...++. . ..+|.+|++. ++.||++++..
T Consensus       276 ~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-~-~~rp~~v~~~pdG~lyv~~~~~  335 (352)
T 2ism_A          276 FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS-G-FGRLREVQVGPDGALYVTTSNR  335 (352)
T ss_dssp             ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE-S-SCCEEEEEECTTSCEEEEECST
T ss_pred             ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc-c-CCCeeEEEECCCCcEEEEEeCC
Confidence            378999999999999999987543       223333 2 5689999995 57899998764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.60  E-value=6.2e-13  Score=134.71  Aligned_cols=232  Identities=13%  Similarity=0.056  Sum_probs=163.1

Q ss_pred             cccEEEEEcCCCceeecc------cCC-cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEe
Q psy952           24 KYYVRNMSLDATQYSLVH------QDL-LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVD   96 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~~~~------~~~-~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD   96 (573)
                      ...|..+++...++...+      ..+ ..+.+|+++  .++||++....+.|.++++........+. ....|.+|+++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~   92 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFL   92 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEe
Confidence            358999999865543211      122 347889887  78999999988999999997654432233 35799999997


Q ss_pred             ecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCC------CcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952           97 WVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQ------DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus        97 ~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~------~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      +. ++||+++...+.|.++++........+....      .|.+|+++  .+.||+++++....|.++++........+ 
T Consensus        93 ~~-g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~~~~i-  168 (328)
T 3dsm_A           93 SD-EKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKVVDEL-  168 (328)
T ss_dssp             ET-TEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEEEEEE-
T ss_pred             CC-CeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeEEEEE-
Confidence            65 5999999777899999997655443333223      79999994  78999999854678999988754433333 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCC----------CeEEEEeCCCCcEE-EEEeCCccceeEEEeee--CCeEEEecC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHL----------DYIASVDLDGKHKH-IVISGQKVPHVFALTLF--EDHIYWTDW  237 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~----------~~I~~~~~dG~~~~-~l~~~~~~~~p~~ia~~--~~~lywtd~  237 (573)
                        .....|.+|++++ +++||++..+.          +.|.+++....... .+.... -.+|.+|++.  +++||+++.
T Consensus       169 --~~g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          169 --TIGIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             --ECSSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS
T ss_pred             --EcCCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc
Confidence              2245799999995 57899998875          78999998755443 332221 2379999996  678999986


Q ss_pred             CCCceEEEeccCCcceE--EEcccCCCceeeeee
Q psy952          238 NTKSINRADKFNGRDYR--VLRNTTHRPYDIHVY  269 (573)
Q Consensus       238 ~~~~I~~~~~~~g~~~~--~l~~~~~~p~~i~v~  269 (573)
                         .|++++..+++...  .+......|.+|++-
T Consensus       245 ---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vd  275 (328)
T 3dsm_A          245 ---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVN  275 (328)
T ss_dssp             ---SEEEEETTCSSCCSSCSBCCCSSCEEEEEEC
T ss_pred             ---EEEEEECCCCceeeeeeecCCCCceEEEEEc
Confidence               89999977766421  111113568777663

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=3.7e-13  Score=135.98  Aligned_cols=212  Identities=13%  Similarity=0.162  Sum_probs=156.3

Q ss_pred             eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCC----CeEE
Q psy952           38 SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHS----KQLD  113 (573)
Q Consensus        38 ~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~----~~I~  113 (573)
                      ..+......+.+++|++ +++|||++...+.|+++++++.....+.......|.+|++|+ .++||++....    +.|.
T Consensus        38 ~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           38 LEISKKGLQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEEESSCCCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEE
T ss_pred             EEEeccCccccCcEECC-CCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEE
Confidence            33444556789999995 567999999889999999987665555433346899999996 46799998765    6899


Q ss_pred             EEEcCCCceeEecc---CCCCcceEEEeCCCceEEEEecCC-----cCeEEEEeccCCCcEEEEecCCCCCCCceEEEec
Q psy952          114 VAELDGTNRKTLKT---AIQDPRGITLHPGIGYVYFSSWNL-----QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY  185 (573)
Q Consensus       114 ~~~ldg~~~~~l~~---~~~~P~~Iavdp~~g~LYwtd~~~-----~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~  185 (573)
                      ++++++...+.++.   ....|.+|+++| .|.||+++...     ...|++++.++...+.+.   ..+..|++|++++
T Consensus       116 ~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~i~~~~  191 (333)
T 2dg1_A          116 AATENGDNLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---QNISVANGIALST  191 (333)
T ss_dssp             EECTTSCSCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---EEESSEEEEEECT
T ss_pred             EEeCCCCEEEEEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEee---cCCCcccceEECC
Confidence            99998876654432   334699999999 67899988531     357999988876555554   3456799999998


Q ss_pred             cCCeEEEEeCCCCeEEEEeC--CCCcEEEE-----EeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          186 FTERLYWADAHLDYIASVDL--DGKHKHIV-----ISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       186 ~~~~LYw~D~~~~~I~~~~~--dG~~~~~l-----~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      .+++||+++...+.|.++++  +|.....+     ........|.+|++. ++.||+++...+.|.+++. +|+....+
T Consensus       192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~  269 (333)
T 2dg1_A          192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  269 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEE
Confidence            87889999988889999998  45433221     111102479999996 5789999988889999986 56555544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.59  E-value=2e-13  Score=136.41  Aligned_cols=224  Identities=17%  Similarity=0.207  Sum_probs=161.2

Q ss_pred             eeecccCCcceEEEEEEcCCCEEEEE-------ECCCCeEEEEEcCCCcceEEEcC----CCCCcceeEEeecCCcEEEE
Q psy952           37 YSLVHQDLLNVVAMDFHYKENRFYFA-------DVAAKTIYRSRVGSTEKERVIRH----DSHGLEGLAVDWVGRKLYWL  105 (573)
Q Consensus        37 ~~~~~~~~~~~~~v~~d~~~~~ly~~-------d~~~~~I~~~~~~g~~~~~i~~~----~~~~p~glavD~~~~~LY~t  105 (573)
                      +..+..++..|.+++|| .++.|||+       +...+.|+++++.+.....+...    ....|.+|++|+.+++||++
T Consensus        10 ~~~~~~~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~   88 (314)
T 1pjx_A           10 FTKVTEDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA   88 (314)
T ss_dssp             CEEEECCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE
T ss_pred             HhhhhccCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE
Confidence            34456678889999999 57799999       77778999999765554444321    22579999999765899999


Q ss_pred             eCCCCeEEEEEcCCCceeEe-cc-----CCCCcceEEEeCCCceEEEEecCC--------------cCeEEEEeccCCCc
Q psy952          106 DRHSKQLDVAELDGTNRKTL-KT-----AIQDPRGITLHPGIGYVYFSSWNL--------------QAYIGKIGMDGSNF  165 (573)
Q Consensus       106 d~~~~~I~~~~ldg~~~~~l-~~-----~~~~P~~Iavdp~~g~LYwtd~~~--------------~~~I~r~~ldG~~~  165 (573)
                      +... .|.+++++|.. +.+ ..     ....|++|++|+ .|.||+++...              ...|++.+.+|.. 
T Consensus        89 ~~~~-~l~~~d~~g~~-~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-  164 (314)
T 1pjx_A           89 DMRL-GLLVVQTDGTF-EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-  164 (314)
T ss_dssp             ETTT-EEEEEETTSCE-EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE-
T ss_pred             ECCC-CEEEEeCCCCE-EEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCE-
Confidence            8744 79999998544 344 32     234599999999 67899998543              1579999888543 


Q ss_pred             EEEEecCCCCCCCceEEEe----ccCCeEEEEeCCCCeEEEEeCC--CCc--EEEEEe-CCcc-ceeEEEeee-CCeEEE
Q psy952          166 TRILTHEDDIAWPNALTLD----YFTERLYWADAHLDYIASVDLD--GKH--KHIVIS-GQKV-PHVFALTLF-EDHIYW  234 (573)
Q Consensus       166 ~~l~~~~~~l~~P~glaiD----~~~~~LYw~D~~~~~I~~~~~d--G~~--~~~l~~-~~~~-~~p~~ia~~-~~~lyw  234 (573)
                      ..+.   ..+..|++|+++    +.++.||+++...++|.+++++  |..  .+.+.. .... ..|.+|++. ++.||+
T Consensus       165 ~~~~---~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v  241 (314)
T 1pjx_A          165 IQVD---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV  241 (314)
T ss_dssp             EEEE---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred             EEec---cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEE
Confidence            3333   345679999999    8777999999999999999876  321  122222 1112 579999996 578999


Q ss_pred             ecCCCCceEEEeccCCcceEEEcccCCCceeeee
Q psy952          235 TDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       235 td~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v  268 (573)
                      +++..+.|.+++..+|+....+......|.+|++
T Consensus       242 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~  275 (314)
T 1pjx_A          242 ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF  275 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred             EEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE
Confidence            9988899999987667666555443456666665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.59  E-value=3.7e-13  Score=137.72  Aligned_cols=226  Identities=12%  Similarity=0.142  Sum_probs=157.6

Q ss_pred             CEEEEEec-ccEEEEEcCCCceeec-----ccCCcceEEEEEEcC---CCEEEEEECC---C----CeEEEEEcCCC---
Q psy952           17 PWLIFSNK-YYVRNMSLDATQYSLV-----HQDLLNVVAMDFHYK---ENRFYFADVA---A----KTIYRSRVGST---   77 (573)
Q Consensus        17 ~~l~~s~~-~~I~~i~l~g~~~~~~-----~~~~~~~~~v~~d~~---~~~ly~~d~~---~----~~I~~~~~~g~---   77 (573)
                      .-|+++.. ..|++++.+|. ..+.     ..+...+.+|++++.   ++.||+++..   .    .+|.|+++++.   
T Consensus        40 G~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~  118 (354)
T 3a9g_A           40 GRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFK  118 (354)
T ss_dssp             TEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCC
T ss_pred             CeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcC
Confidence            45666664 67888876665 2111     234567999999987   8999999863   3    68999998765   


Q ss_pred             --cceEEEc----CCCCCcceeEEeecCCcEEEEeCC-------------CCeEEEEEcCCC--------ceeEeccCCC
Q psy952           78 --EKERVIR----HDSHGLEGLAVDWVGRKLYWLDRH-------------SKQLDVAELDGT--------NRKTLKTAIQ  130 (573)
Q Consensus        78 --~~~~i~~----~~~~~p~glavD~~~~~LY~td~~-------------~~~I~~~~ldg~--------~~~~l~~~~~  130 (573)
                        ..++++.    ...+.+.+|++++ .++||++...             .++|.+++.+|+        ..+++..++.
T Consensus       119 ~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r  197 (354)
T 3a9g_A          119 LKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR  197 (354)
T ss_dssp             EEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS
T ss_pred             cCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC
Confidence              2333332    2346789999997 5689999632             368999999997        3456667899


Q ss_pred             CcceEEEeCCCceEEEEecCCc--CeEEEEeccCCC---------------cEEEEecCCCCCCCceEEE-------ecc
Q psy952          131 DPRGITLHPGIGYVYFSSWNLQ--AYIGKIGMDGSN---------------FTRILTHEDDIAWPNALTL-------DYF  186 (573)
Q Consensus       131 ~P~~Iavdp~~g~LYwtd~~~~--~~I~r~~ldG~~---------------~~~l~~~~~~l~~P~glai-------D~~  186 (573)
                      +|.+|++||..|.||+++.+..  ..|.++.. |.+               ...+.........|.||++       + .
T Consensus       198 np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~-G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~-~  275 (354)
T 3a9g_A          198 NPQGIDWHRASGVMVATEHGPVGHDEVNIILK-GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPG-L  275 (354)
T ss_dssp             CCCEEEECTTTCCEEEEECCSSSCCEEEEECT-TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGG-G
T ss_pred             CcceEEEeCCCCCEEEEecCCCCCcEEEEecC-CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcc-c
Confidence            9999999998899999997642  34665543 221               0111110123346899999       4 5


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCc-E---EEEEeCCccceeEEEeee-CCeEEEecCC-CC---------ceEEEec
Q psy952          187 TERLYWADAHLDYIASVDLDGKH-K---HIVISGQKVPHVFALTLF-EDHIYWTDWN-TK---------SINRADK  247 (573)
Q Consensus       187 ~~~LYw~D~~~~~I~~~~~dG~~-~---~~l~~~~~~~~p~~ia~~-~~~lywtd~~-~~---------~I~~~~~  247 (573)
                      .+.||+++...++|.++++++.. .   +.++.+. ...|.+|++. ++.||++++. .+         +|+|+..
T Consensus       276 ~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~~  350 (354)
T 3a9g_A          276 RGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV-FGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIVS  350 (354)
T ss_dssp             TTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT-SCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEEE
T ss_pred             CCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC-CCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEec
Confidence            68999999999999999998542 2   2333332 5689999985 5689999874 44         7888753

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.59  E-value=4.2e-13  Score=133.85  Aligned_cols=214  Identities=13%  Similarity=0.054  Sum_probs=153.6

Q ss_pred             CCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC----CCCC
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH----DSHG   89 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~----~~~~   89 (573)
                      ...|++++  ...|+++++++...... .....+.+|++++..+ ||++.  ...|+++++++...+.+...    ....
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~~i~~~~dG~-l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~   99 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVSSVALRQSGG-YVATI--GTKFCALNWKEQSAVVLATVDNDKKNNR   99 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEEEEEEBTTSS-EEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceEEEEECCCCC-EEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCC
Confidence            35677776  46899999987655433 2235688999997554 77775  46899999987665555432    2356


Q ss_pred             cceeEEeecCCcEEEEeC-----------CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEE
Q psy952           90 LEGLAVDWVGRKLYWLDR-----------HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI  158 (573)
Q Consensus        90 p~glavD~~~~~LY~td~-----------~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~  158 (573)
                      |.+|++|+ .++||+++.           ..+.|++++.+|.. ..+...+..|++|+++|....|||++.. ..+|++.
T Consensus       100 ~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~~~~-~~~i~~~  176 (297)
T 3g4e_A          100 FNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYIDSL-SYSVDAF  176 (297)
T ss_dssp             EEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEEEGG-GTEEEEE
T ss_pred             CCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEecCC-CCcEEEE
Confidence            88999997 456999873           33578888887654 3455677789999999988899999954 5689998


Q ss_pred             ecc---CCC--cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCCccceeEEEeeeC---
Q psy952          159 GMD---GSN--FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQKVPHVFALTLFE---  229 (573)
Q Consensus       159 ~ld---G~~--~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~---  229 (573)
                      +++   |..  ++++.........|.||++|+ +++||++....++|.+++.+ |.....+...  ...|.++++.+   
T Consensus       177 ~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p--~~~~t~~~f~g~d~  253 (297)
T 3g4e_A          177 DYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKRLQTVKLP--VDKTTSCCFGGKNY  253 (297)
T ss_dssp             EECTTTCCEEEEEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCEEEEEECS--SSBEEEEEEESGGG
T ss_pred             eccCCCCcccCcEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceEEEEEECC--CCCceEEEEeCCCC
Confidence            875   321  233442112235799999995 56999999988999999998 6655555433  35899999853   


Q ss_pred             CeEEEecCCC
Q psy952          230 DHIYWTDWNT  239 (573)
Q Consensus       230 ~~lywtd~~~  239 (573)
                      +.||+|....
T Consensus       254 ~~L~vt~~~~  263 (297)
T 3g4e_A          254 SEMYVTCARD  263 (297)
T ss_dssp             CEEEEEEBCT
T ss_pred             CEEEEEcCCc
Confidence            5899997653

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.58  E-value=3.3e-13  Score=137.66  Aligned_cols=209  Identities=13%  Similarity=0.160  Sum_probs=147.1

Q ss_pred             cEEEEEcCCCceeec------ccCCcceEEEEEEcCCCEEEEEECC-----CCeEEEEEcCCCc-ceEEEcC-C----CC
Q psy952           26 YVRNMSLDATQYSLV------HQDLLNVVAMDFHYKENRFYFADVA-----AKTIYRSRVGSTE-KERVIRH-D----SH   88 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~------~~~~~~~~~v~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~-~~~i~~~-~----~~   88 (573)
                      .|..++ ++.....+      ...+..|.+|++|+. ++|||+|..     ..+|+++++++.. ...+... .    ..
T Consensus        43 ~l~~~~-~g~~~~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~  120 (343)
T 2qe8_A           43 QVAELT-QDGLIPFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNS  120 (343)
T ss_dssp             SEEEEE-TTEEEESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTC
T ss_pred             EEEEEC-CCCeecCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhccccc
Confidence            577777 54321111      124567999999974 889999986     5799999997544 3333221 1    23


Q ss_pred             CcceeEEeecCCcEEEEeC---CCCeEEEEEcC-CCceeEecc--------------C---------------CCCcceE
Q psy952           89 GLEGLAVDWVGRKLYWLDR---HSKQLDVAELD-GTNRKTLKT--------------A---------------IQDPRGI  135 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~---~~~~I~~~~ld-g~~~~~l~~--------------~---------------~~~P~~I  135 (573)
                      .|.+|+||..++.+|++|.   ..+.|.++++. |...+++..              +               ...|.||
T Consensus       121 ~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gi  200 (343)
T 2qe8_A          121 FVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGI  200 (343)
T ss_dssp             CCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEE
T ss_pred             ccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceeccccee
Confidence            6799999987889999998   78899999986 443333311              0               0247999


Q ss_pred             EEeCCCceEEEEecCCcCeEEEEecc----CCC--------cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952          136 TLHPGIGYVYFSSWNLQAYIGKIGMD----GSN--------FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV  203 (573)
Q Consensus       136 avdp~~g~LYwtd~~~~~~I~r~~ld----G~~--------~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~  203 (573)
                      |++|..+.||+++.. ..+|++++.+    +..        ...+.    ....|.||++|+ +++||++++..++|.++
T Consensus       201 a~s~dg~~ly~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g----~~g~pdgia~d~-~G~l~va~~~~~~V~~~  274 (343)
T 2qe8_A          201 VLDAENEWLYLSPMH-STSMYRIKSADLSNLQLTDAELGSKIERYS----EKPICDGISIDK-DHNIYVGDLAHSAIGVI  274 (343)
T ss_dssp             EECTTSCEEEEEESS-CSEEEEEEHHHHTCTTCCHHHHHTTCEEEE----ECCSCSCEEECT-TCCEEEEEGGGTEEEEE
T ss_pred             EeccCCCEEEEEeCC-CCeEEEEEHHHhcCCCCChhhhhcceEecc----cCCCCceEEECC-CCCEEEEccCCCeEEEE
Confidence            999988899999964 4589988753    210        11111    234799999996 58999999999999999


Q ss_pred             eC-CCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceE
Q psy952          204 DL-DGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSIN  243 (573)
Q Consensus       204 ~~-dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~  243 (573)
                      +. +|. ..++.....+..|.+|++. ++.||+++...+++.
T Consensus       275 d~~~G~-~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~  315 (343)
T 2qe8_A          275 TSADRA-YKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA  315 (343)
T ss_dssp             ETTTTE-EEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred             ECCCCC-EEEEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence            99 775 4444443236789999995 578999987766553

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.56  E-value=2.5e-12  Score=124.28  Aligned_cols=203  Identities=10%  Similarity=0.055  Sum_probs=149.0

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-e
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-K  123 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~  123 (573)
                      .++.||+|++.+++||.+....+.|+++++.|.....+...+...++|||++. .+.+|+++...++|.++.++.... .
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i~  105 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNSEVK  105 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTCCEE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCCeee
Confidence            57999999999999999777788999999997766666556678999999984 566778888888999888764332 1


Q ss_pred             ---EeccCC-CC-----cceEEEeCCCceEEEEecCCcCeEEEEe--ccCCCcEEEEe----cCCCCCCCceEEEeccCC
Q psy952          124 ---TLKTAI-QD-----PRGITLHPGIGYVYFSSWNLQAYIGKIG--MDGSNFTRILT----HEDDIAWPNALTLDYFTE  188 (573)
Q Consensus       124 ---~l~~~~-~~-----P~~Iavdp~~g~LYwtd~~~~~~I~r~~--ldG~~~~~l~~----~~~~l~~P~glaiD~~~~  188 (573)
                         .+--.+ ..     ..|||+||..+.||++.......|++.+  +.+....++..    ....+..+.+|++|+..+
T Consensus       106 ~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg  185 (255)
T 3qqz_A          106 ILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKN  185 (255)
T ss_dssp             EEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTT
T ss_pred             eeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCC
Confidence               111122 23     4899999998899998755444788876  22222333321    022466789999999999


Q ss_pred             eEEEEeCCCCeEEEEeCCCCcEEEEEeC-C------ccceeEEEeee-CCeEEEecCCCCceEEEeccC
Q psy952          189 RLYWADAHLDYIASVDLDGKHKHIVISG-Q------KVPHVFALTLF-EDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       189 ~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~------~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~  249 (573)
                      +||+.....+.|..++.+|..+..+.-. .      .+++|-|||++ ++.||++.-. +.++++.+..
T Consensus       186 ~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~-n~~y~f~~~~  253 (255)
T 3qqz_A          186 TLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP-NRFYRFTPQS  253 (255)
T ss_dssp             EEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT-TEEEEEEC--
T ss_pred             eEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC-ceEEEEEecC
Confidence            9999999999999999999855544322 1      15799999995 5789999544 6888887644

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.56  E-value=1.4e-13  Score=141.01  Aligned_cols=212  Identities=10%  Similarity=0.134  Sum_probs=147.6

Q ss_pred             CCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE------EcCCCCCcceeEEeec---CCcEE
Q psy952           33 DATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV------IRHDSHGLEGLAVDWV---GRKLY  103 (573)
Q Consensus        33 ~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i------~~~~~~~p~glavD~~---~~~LY  103 (573)
                      ++-..++++..+..|.+|++++....||+++.. ++|++++.+|...+.+      ...+...|.+||+++.   ++.||
T Consensus         6 ~g~~~~~va~~l~~P~~i~~~pdG~~l~V~e~~-G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lY   84 (353)
T 2g8s_A            6 ATVNVEVLQDKLDHPWALAFLPDNHGMLITLRG-GELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIW   84 (353)
T ss_dssp             CCSEEEEEEEEESSEEEEEECSTTCCEEEEETT-TEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEE
T ss_pred             CCcEEEEEECCCCCcEEEEEcCCCCEEEEEeCC-ceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEE
Confidence            344556667778899999999754339999974 7999998776432211      2233457899999985   79999


Q ss_pred             EEeCC-------CCeEEEEEcCCC-----ceeEeccC-------CCCcceEEEeCCCceEEEEecCC------------c
Q psy952          104 WLDRH-------SKQLDVAELDGT-----NRKTLKTA-------IQDPRGITLHPGIGYVYFSSWNL------------Q  152 (573)
Q Consensus       104 ~td~~-------~~~I~~~~ldg~-----~~~~l~~~-------~~~P~~Iavdp~~g~LYwtd~~~------------~  152 (573)
                      +++..       ..+|.++++++.     ..++++..       ...|.+|+++| .|+||++....            .
T Consensus        85 v~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~  163 (353)
T 2g8s_A           85 LSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQ  163 (353)
T ss_dssp             EEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCT
T ss_pred             EEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCC
Confidence            99754       357988888643     33444432       23489999999 67999997321            3


Q ss_pred             CeEEEEeccCC-------------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC---eEEEEeCCCCc-------
Q psy952          153 AYIGKIGMDGS-------------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD---YIASVDLDGKH-------  209 (573)
Q Consensus       153 ~~I~r~~ldG~-------------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~---~I~~~~~dG~~-------  209 (573)
                      .+|.|++.||+             ..+++.   ..+..|.||++|+..++||++|.+.+   .|.++...+.-       
T Consensus       164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a---~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~  240 (353)
T 2g8s_A          164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWS---YGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATW  240 (353)
T ss_dssp             TEEEEEETTSCCCTTCTTTTSTTSCTTEEE---ECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCS
T ss_pred             eEEEEECCCCCCCCCCCCcCCCCCCccEEE---EcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccC
Confidence            58999999997             334433   67889999999988999999998754   44443221110       


Q ss_pred             --------------------EE-EEEeCCccceeEEEeee--------CCeEEEecCCCCceEEEeccCC
Q psy952          210 --------------------KH-IVISGQKVPHVFALTLF--------EDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       210 --------------------~~-~l~~~~~~~~p~~ia~~--------~~~lywtd~~~~~I~~~~~~~g  250 (573)
                                          .. ++.-.. ...|.|++++        .+.||++++..++|.++....+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~  309 (353)
T 2g8s_A          241 GINYSGFKIPEAKGEIVAGTEQPVFYWKD-SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD  309 (353)
T ss_dssp             SBCTTSSCCTTCCBSSCTTSCCCSEEESS-CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred             CCCCCCCccCcccCCCCCCccCCeEEeCC-CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC
Confidence                                00 000011 2368999995        4789999999999999986544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.55  E-value=1.1e-12  Score=132.55  Aligned_cols=227  Identities=13%  Similarity=0.086  Sum_probs=157.9

Q ss_pred             ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE------cCCCCCcceeEEee---cCCcEEEEe
Q psy952           36 QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI------RHDSHGLEGLAVDW---VGRKLYWLD  106 (573)
Q Consensus        36 ~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~------~~~~~~p~glavD~---~~~~LY~td  106 (573)
                      ..++++.++..|.+|++.+ +++||+++...++|++++.++...+.+.      ..+...+.|||+++   .++.||++.
T Consensus        23 ~~~~va~gL~~P~~ia~~p-dG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y  101 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLP-GGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF  101 (347)
T ss_dssp             EEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred             eeEEeecCCCCceEEEEcC-CCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence            3456778899999999997 5789999998899999987654443332      23467899999997   478899865


Q ss_pred             C--CCCeEEEEEcCCC--------ceeEecc-----CCCCcceEEEeCCCceEEEEecC------------CcCeEEEEe
Q psy952          107 R--HSKQLDVAELDGT--------NRKTLKT-----AIQDPRGITLHPGIGYVYFSSWN------------LQAYIGKIG  159 (573)
Q Consensus       107 ~--~~~~I~~~~ldg~--------~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~------------~~~~I~r~~  159 (573)
                      +  ..++|.++.+++.        ..++|+.     ....+..|+++| .|+||++...            ...+|.|++
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~  180 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMT  180 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEEC
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEe
Confidence            3  4578999988762        2344443     223478899999 6899999521            246999999


Q ss_pred             ccCC--------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC---eEEEEeCCCCcE---------------E-E
Q psy952          160 MDGS--------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD---YIASVDLDGKHK---------------H-I  212 (573)
Q Consensus       160 ldG~--------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~---~I~~~~~dG~~~---------------~-~  212 (573)
                      .||+        ..+++.   ..+..|.||++|+ .+.||++|.+.+   .|.++.. |.+-               . +
T Consensus       181 ~dG~ip~~nPf~~~~i~a---~G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~-G~nyGwP~~~g~~~~~~~~~P~  255 (347)
T 3das_A          181 PDGEPAPGNPFPGSPVYS---YGHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIKP-GDNYGWPEAEGKGGGSGFHDPV  255 (347)
T ss_dssp             TTSSBCTTCSSTTCCEEE---BCCSBCCEEEECT-TCCEEEEECCSSSCEEEEEECT-TCBCCTTTCCSSCCCTTCCCCS
T ss_pred             CCCCccCCCCCCCCeEEe---eCCCCcceEEECC-CCCEEEEecCCCCCceeeEEcC-CCEecCCcccCCCCCccccCCc
Confidence            9998        444443   7899999999998 699999998764   4555432 2220               0 0


Q ss_pred             EEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcc---eEEE-cccCCCceeeeee
Q psy952          213 VISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD---YRVL-RNTTHRPYDIHVY  269 (573)
Q Consensus       213 l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~---~~~l-~~~~~~p~~i~v~  269 (573)
                      +.-......|.||+++.+.+|.+.+...+|.++....+..   .+.+ .....+|.+|++-
T Consensus       256 ~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~  316 (347)
T 3das_A          256 AQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPA  316 (347)
T ss_dssp             EEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEE
T ss_pred             EecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEEC
Confidence            0001102378999999999999999999999987543321   1223 2223456666553

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.53  E-value=2.4e-12  Score=128.79  Aligned_cols=215  Identities=13%  Similarity=0.138  Sum_probs=153.4

Q ss_pred             CEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC----CCCCc
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH----DSHGL   90 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~----~~~~p   90 (573)
                      ..|++++  .+.|++++.++. ...+......+.++++|+ +++||+++...+.|++++.+|. .+.+...    .+..|
T Consensus        57 ~~l~~~d~~~~~i~~~~~~g~-~~~~~~~~~~~~gl~~d~-dG~l~v~~~~~~~v~~~~~~g~-~~~~~~~~~~~~~~~~  133 (305)
T 3dr2_A           57 RTLVWSDLVGRRVLGWREDGT-VDVLLDATAFTNGNAVDA-QQRLVHCEHGRRAITRSDADGQ-AHLLVGRYAGKRLNSP  133 (305)
T ss_dssp             TEEEEEETTTTEEEEEETTSC-EEEEEESCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC-EEEEECEETTEECSCC
T ss_pred             CEEEEEECCCCEEEEEeCCCC-EEEEeCCCCccceeeECC-CCCEEEEECCCCEEEEECCCCC-EEEEEeccCCCccCCC
Confidence            3566765  468899988654 444444456789999997 5679999988889999999854 3333321    24578


Q ss_pred             ceeEEeecCCcEEEEeCC-----------------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC--
Q psy952           91 EGLAVDWVGRKLYWLDRH-----------------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL--  151 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~-----------------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~--  151 (573)
                      .+|++|. .++||+||..                 .+.|+++++++...+.+. .+..|++|+++|....|||++...  
T Consensus       134 ~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~  211 (305)
T 3dr2_A          134 NDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGLAFSPDEQTLYVSQTPEQG  211 (305)
T ss_dssp             CCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEEEECTTSSEEEEEECCC--
T ss_pred             CCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcceEEcCCCCEEEEEecCCcC
Confidence            9999996 6789998741                 357899988544444445 778899999999888899999642  


Q ss_pred             --cCeEEEEeccCCC---cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEe
Q psy952          152 --QAYIGKIGMDGSN---FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALT  226 (573)
Q Consensus       152 --~~~I~r~~ldG~~---~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia  226 (573)
                        ...|++.++++..   .+++.  ......|.||++|. +++||++.  .+.|.+++.+|.....+....   .|..++
T Consensus       212 ~~~~~i~~~~~~~~~l~~~~~~~--~~~~~~pdgi~~d~-~G~lwv~~--~~gv~~~~~~g~~~~~~~~~~---~~~~~~  283 (305)
T 3dr2_A          212 HGSVEITAFAWRDGALHDRRHFA--SVPDGLPDGFCVDR-GGWLWSSS--GTGVCVFDSDGQLLGHIPTPG---TASNCT  283 (305)
T ss_dssp             -CCCEEEEEEEETTEEEEEEEEE--CCSSSCCCSEEECT-TSCEEECC--SSEEEEECTTSCEEEEEECSS---CCCEEE
T ss_pred             CCCCEEEEEEecCCCccCCeEEE--ECCCCCCCeEEECC-CCCEEEec--CCcEEEECCCCCEEEEEECCC---ceeEEE
Confidence              2689999887643   23444  33456799999995 56688887  356999999988776665432   477777


Q ss_pred             e--eCCeEEEecCCCCceEEEe
Q psy952          227 L--FEDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       227 ~--~~~~lywtd~~~~~I~~~~  246 (573)
                      +  .++.||++..  +.|++++
T Consensus       284 f~~d~~~L~it~~--~~l~~~~  303 (305)
T 3dr2_A          284 FDQAQQRLFITGG--PCLWMLP  303 (305)
T ss_dssp             ECTTSCEEEEEET--TEEEEEE
T ss_pred             EeCCCCEEEEEcC--CeEEEEE
Confidence            7  4457888864  4677764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.53  E-value=8.2e-12  Score=124.02  Aligned_cols=216  Identities=14%  Similarity=0.098  Sum_probs=155.9

Q ss_pred             EEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC----CCCCcce
Q psy952           19 LIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH----DSHGLEG   92 (573)
Q Consensus        19 l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~----~~~~p~g   92 (573)
                      |+++.  ...|+++++++. ...+......|.+|++++ +++||+++...+.|+++++.....+.+...    ....|.+
T Consensus        42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  119 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPND  119 (296)
T ss_dssp             EEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCC
T ss_pred             EEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCC
Confidence            55554  468999999877 555545556799999997 667999998888999999854444444321    2457889


Q ss_pred             eEEeecCCcEEEEeC-----------------CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeE
Q psy952           93 LAVDWVGRKLYWLDR-----------------HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYI  155 (573)
Q Consensus        93 lavD~~~~~LY~td~-----------------~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I  155 (573)
                      |++|+ .++||++|.                 ..+.|++++.+|. .+.+...+..|.+|+++|....| |++.. ...|
T Consensus       120 i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~~~~~~~~gi~~s~dg~~l-v~~~~-~~~i  195 (296)
T 3e5z_A          120 VCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT-LSAPIRDRVKPNGLAFLPSGNLL-VSDTG-DNAT  195 (296)
T ss_dssp             EEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC-EEEEECCCSSEEEEEECTTSCEE-EEETT-TTEE
T ss_pred             EEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCCCC-EEEeecCCCCCccEEECCCCCEE-EEeCC-CCeE
Confidence            99997 568999875                 1358999988854 34455677889999999977667 99854 5689


Q ss_pred             EEEecc--CCC---cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee--
Q psy952          156 GKIGMD--GSN---FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF--  228 (573)
Q Consensus       156 ~r~~ld--G~~---~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--  228 (573)
                      ++.+++  |..   ..++   ......|.+|++|+ +++||++.  .+.|.+++.+|.....+....  . |..+++.  
T Consensus       196 ~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~-~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~--~-~~~~~f~~~  266 (296)
T 3e5z_A          196 HRYCLNARGETEYQGVHF---TVEPGKTDGLRVDA-GGLIWASA--GDGVHVLTPDGDELGRVLTPQ--T-TSNLCFGGP  266 (296)
T ss_dssp             EEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBT-TSCEEEEE--TTEEEEECTTSCEEEEEECSS--C-CCEEEEEST
T ss_pred             EEEEECCCCcCcCCCeEe---eCCCCCCCeEEECC-CCCEEEEc--CCeEEEECCCCCEEEEEECCC--C-ceeEEEECC
Confidence            998885  432   2222   23456799999995 56899998  678999999987666655442  3 8888773  


Q ss_pred             -CCeEEEecCCCCceEEEeccCCc
Q psy952          229 -EDHIYWTDWNTKSINRADKFNGR  251 (573)
Q Consensus       229 -~~~lywtd~~~~~I~~~~~~~g~  251 (573)
                       ++.||++..  +.|++++..+..
T Consensus       267 d~~~L~v~t~--~~l~~~~~~~~~  288 (296)
T 3e5z_A          267 EGRTLYMTVS--TEFWSIETNVRG  288 (296)
T ss_dssp             TSCEEEEEET--TEEEEEECSCCB
T ss_pred             CCCEEEEEcC--CeEEEEEccccc
Confidence             246888864  578888865544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.53  E-value=5e-12  Score=126.18  Aligned_cols=218  Identities=13%  Similarity=0.097  Sum_probs=154.4

Q ss_pred             ecccEEEEEcCCCceeeccc-----CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE-EcC----CCCCcce
Q psy952           23 NKYYVRNMSLDATQYSLVHQ-----DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV-IRH----DSHGLEG   92 (573)
Q Consensus        23 ~~~~I~~i~l~g~~~~~~~~-----~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i-~~~----~~~~p~g   92 (573)
                      ..+.|+++++....+..+..     ....|.+|++++..++||+++... .|++++++ .....+ ...    ....|.+
T Consensus        44 ~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~-~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~  121 (314)
T 1pjx_A           44 PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRL-GLLVVQTD-GTFEEIAKKDSEGRRMQGCND  121 (314)
T ss_dssp             ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTT-EEEEEETT-SCEEECCSBCTTSCBCBCCCE
T ss_pred             CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCC-CEEEEeCC-CCEEEEEeccCCCccccCCcC
Confidence            35679999876555443322     235689999997658999998754 79999988 333333 211    1346899


Q ss_pred             eEEeecCCcEEEEeCCC---------------CeEEEEEcCCCceeEeccCCCCcceEEEe----CCCceEEEEecCCcC
Q psy952           93 LAVDWVGRKLYWLDRHS---------------KQLDVAELDGTNRKTLKTAIQDPRGITLH----PGIGYVYFSSWNLQA  153 (573)
Q Consensus        93 lavD~~~~~LY~td~~~---------------~~I~~~~ldg~~~~~l~~~~~~P~~Iavd----p~~g~LYwtd~~~~~  153 (573)
                      |++|. .++||+++...               +.|.+++.+|.. ..+...+..|.+|+++    +..+.||+++.. ..
T Consensus       122 i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~-~~  198 (314)
T 1pjx_A          122 CAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP-TK  198 (314)
T ss_dssp             EEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE-EEEEEEESSEEEEEEEECTTSCEEEEEEEETT-TT
T ss_pred             EEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCCCCE-EEeccCCCCcceEEEecccCCCCCEEEEEECC-CC
Confidence            99997 56899998754               689999888543 3444566779999999    976689999854 56


Q ss_pred             eEEEEeccCCCc----EEEEecCCCC-CCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCCccceeEEEee
Q psy952          154 YIGKIGMDGSNF----TRILTHEDDI-AWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQKVPHVFALTL  227 (573)
Q Consensus       154 ~I~r~~ldG~~~----~~l~~~~~~l-~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~  227 (573)
                      .|.+.++++...    ..+....... ..|.+|++|+ +++||+++...+.|.+++.+ |.....+...  ...|.+|++
T Consensus       199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~--~~~~~~i~~  275 (314)
T 1pjx_A          199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRCP--FEKPSNLHF  275 (314)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEECS--SSCEEEEEE
T ss_pred             eEEEEECCCCCccccceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcEeEEEeCC--CCCceeEEE
Confidence            888888763221    1222111222 5699999995 67999999888999999998 6655554332  367999998


Q ss_pred             e-CC-eEEEecCCCCceEEEecc
Q psy952          228 F-ED-HIYWTDWNTKSINRADKF  248 (573)
Q Consensus       228 ~-~~-~lywtd~~~~~I~~~~~~  248 (573)
                      . ++ .||+++...+.|.+++..
T Consensus       276 ~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          276 KPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEEeCCCCeEEEEeCC
Confidence            4 33 499999888899998754

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.53  E-value=4.1e-12  Score=128.48  Aligned_cols=214  Identities=14%  Similarity=0.144  Sum_probs=152.7

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR  122 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~  122 (573)
                      ....+.+++|++.++.|||++...+.|+++++++.....+.. . ..|.+|+++.. ++||++.  .+.|.++++++...
T Consensus        47 ~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~-~-~~v~~i~~~~d-g~l~v~~--~~gl~~~d~~~g~~  121 (326)
T 2ghs_A           47 PMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-P-FMGSALAKISD-SKQLIAS--DDGLFLRDTATGVL  121 (326)
T ss_dssp             CCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-S-SCEEEEEEEET-TEEEEEE--TTEEEEEETTTCCE
T ss_pred             CCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEC-C-CcceEEEEeCC-CeEEEEE--CCCEEEEECCCCcE
Confidence            345678999999899999999999999999998765543332 2 47889999864 6677776  34599999876555


Q ss_pred             eEeccC-----CCCcceEEEeCCCceEEEEecC-----CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEE
Q psy952          123 KTLKTA-----IQDPRGITLHPGIGYVYFSSWN-----LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW  192 (573)
Q Consensus       123 ~~l~~~-----~~~P~~Iavdp~~g~LYwtd~~-----~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw  192 (573)
                      +.+...     ...|++|++|| .|.||+++.+     ....|++++ +|... .+.   ..+..|++|+++++++.|||
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~-~~~---~~~~~~~~i~~s~dg~~lyv  195 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKVT-KLF---ADISIPNSICFSPDGTTGYF  195 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEEE-EEE---EEESSEEEEEECTTSCEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcEE-Eee---CCCcccCCeEEcCCCCEEEE
Confidence            544321     23589999999 5778888743     135799988 65432 233   34567999999988889999


Q ss_pred             EeCCCCeEEEEeCC---C-C--cEEEEEe-CCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcccCCCce
Q psy952          193 ADAHLDYIASVDLD---G-K--HKHIVIS-GQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPY  264 (573)
Q Consensus       193 ~D~~~~~I~~~~~d---G-~--~~~~l~~-~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~  264 (573)
                      ++...+.|++++++   | .  .++++.. ......|.+|+++ ++.||++.+..+.|.+++. +|+....+......|.
T Consensus       196 ~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~  274 (326)
T 2ghs_A          196 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTT  274 (326)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEE
T ss_pred             EECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcE
Confidence            99988999999985   4 2  2334433 1114579999996 5679999988889999986 6665555543333455


Q ss_pred             eeee
Q psy952          265 DIHV  268 (573)
Q Consensus       265 ~i~v  268 (573)
                      .+++
T Consensus       275 ~~af  278 (326)
T 2ghs_A          275 CPAF  278 (326)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.52  E-value=7.3e-13  Score=135.04  Aligned_cols=218  Identities=11%  Similarity=0.067  Sum_probs=149.0

Q ss_pred             cceEEEEEEcCCCEEEEEECC--CC--eEEEEEcCCCcceEE------EcCCCCCcceeEEeecCCcEEEEeCC-----C
Q psy952           45 LNVVAMDFHYKENRFYFADVA--AK--TIYRSRVGSTEKERV------IRHDSHGLEGLAVDWVGRKLYWLDRH-----S  109 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~--~~--~I~~~~~~g~~~~~i------~~~~~~~p~glavD~~~~~LY~td~~-----~  109 (573)
                      ..|.+|++++ +++||++...  .+  +|++++ +|.. ..+      ....+..|.+|++|.. ++|||+|..     .
T Consensus        17 ~~p~~va~~~-~g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~   92 (343)
T 2qe8_A           17 LAPGNITLTP-DGRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGN-GIVWMLDNGNQSKSV   92 (343)
T ss_dssp             SCEEEEEECT-TSCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSS-SEEEEEECHHHHTSC
T ss_pred             CCcceEEECC-CCCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCC-CcEEEEcCCCCcCCC
Confidence            5799999996 6789999642  23  788887 5421 111      1123679999999975 789999976     5


Q ss_pred             CeEEEEEcC-CCceeEec-c-----CCCCcceEEEeCCCceEEEEecC--CcCeEEEEeccCCCcEEEEec---------
Q psy952          110 KQLDVAELD-GTNRKTLK-T-----AIQDPRGITLHPGIGYVYFSSWN--LQAYIGKIGMDGSNFTRILTH---------  171 (573)
Q Consensus       110 ~~I~~~~ld-g~~~~~l~-~-----~~~~P~~Iavdp~~g~LYwtd~~--~~~~I~r~~ldG~~~~~l~~~---------  171 (573)
                      ++|.++++. |...+++. .     ....|.+|+||+..+++|+++.+  ....|.+.+++......++..         
T Consensus        93 ~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~  172 (343)
T 2qe8_A           93 PKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDI  172 (343)
T ss_dssp             CEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSC
T ss_pred             CeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccc
Confidence            799999997 44344432 1     12358999999988999999963  356788888763332222200         


Q ss_pred             ----CC--------------CCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC----CC--c------EEEEEeCCccce
Q psy952          172 ----ED--------------DIAWPNALTLDYFTERLYWADAHLDYIASVDLD----GK--H------KHIVISGQKVPH  221 (573)
Q Consensus       172 ----~~--------------~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d----G~--~------~~~l~~~~~~~~  221 (573)
                          ..              -...|+||+++++++.||+++....+|++++.+    +.  .      ...+  +. ...
T Consensus       173 ~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--g~-~g~  249 (343)
T 2qe8_A          173 DLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY--SE-KPI  249 (343)
T ss_dssp             CCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE--EE-CCS
T ss_pred             ceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec--cc-CCC
Confidence                00              013479999999888999999988899999853    21  1      1111  11 347


Q ss_pred             eEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcc-cCCCceeeeee
Q psy952          222 VFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRN-TTHRPYDIHVY  269 (573)
Q Consensus       222 p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~-~~~~p~~i~v~  269 (573)
                      |.||+++ ++.||++++..++|.+++..+|+...++.. .+..|.+|++-
T Consensus       250 pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~  299 (343)
T 2qe8_A          250 CDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFG  299 (343)
T ss_dssp             CSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEEC
T ss_pred             CceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEEC
Confidence            8999995 578999999999999999646654333322 25567777764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.52  E-value=1.2e-11  Score=125.32  Aligned_cols=210  Identities=16%  Similarity=0.173  Sum_probs=157.5

Q ss_pred             CcceEEEEEEcCCCEEEEEECC------CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952           44 LLNVVAMDFHYKENRFYFADVA------AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL  117 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l  117 (573)
                      ...+.+++|++.+++||+++..      .+.|+++++.+......+..+ ..|.++++++.++.||+++...+.|.++++
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            3458899999999999999976      568999998765544334333 579999999988889999998899999998


Q ss_pred             CCCce-eEecc-CCC--------CcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccC
Q psy952          118 DGTNR-KTLKT-AIQ--------DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFT  187 (573)
Q Consensus       118 dg~~~-~~l~~-~~~--------~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~  187 (573)
                      ..... ..+.. ...        .|++|+++|..++||+++++....|.+.++........+  ......|.++++++.+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI--QNTGKMSTGLALDSEG  196 (353)
T ss_dssp             TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE--CCCCTTCCCCEEETTT
T ss_pred             CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe--cCCCCccceEEECCCC
Confidence            75443 33322 111        389999999989999999766778999988765544444  3244569999999999


Q ss_pred             CeEEEEeCCCCeEEEEeCCCCcEEEEEeC-C--ccceeEEEeee--CCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          188 ERLYWADAHLDYIASVDLDGKHKHIVISG-Q--KVPHVFALTLF--EDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       188 ~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~--~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      ++||+++. .+.|..+++........... .  ....|.+|++.  +++||+++...+.|..++..+++....+.
T Consensus       197 ~~l~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          197 KRLYTTNA-DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             TEEEEECT-TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEcC-CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            99999976 67899999876544333321 1  13457788874  66799999988999999988887666554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.49  E-value=2.1e-11  Score=122.61  Aligned_cols=228  Identities=8%  Similarity=0.003  Sum_probs=163.7

Q ss_pred             CEEEEEe--cccEEEEEcCCCceee-cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-eEEEcCCCCCcce
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSL-VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-ERVIRHDSHGLEG   92 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~-~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~i~~~~~~~p~g   92 (573)
                      .+++++.  .+.|+.+++...+... +..+...+ +++|++.++.||++....+.|+++++.+... ...+..+ ..|..
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~   87 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG-QSSMA   87 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC-SSCCC
T ss_pred             CEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC-CCCcc
Confidence            4556655  4789999998655433 33345556 9999998889999999889999999977654 3333333 57777


Q ss_pred             -eEEeecCCcEEEEeCCCC--eEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE---
Q psy952           93 -LAVDWVGRKLYWLDRHSK--QLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT---  166 (573)
Q Consensus        93 -lavD~~~~~LY~td~~~~--~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~---  166 (573)
                       +++++.++.||.+....+  .|.+.++........+.....|.+++++|...+||+++......|...+++.....   
T Consensus        88 ~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~  167 (331)
T 3u4y_A           88 DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDT  167 (331)
T ss_dssp             CEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEE
T ss_pred             ceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeec
Confidence             999998888994443334  89999998665544455556799999999888899998653332555555432221   


Q ss_pred             --EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc----EEEEEeCCccceeEEEeee--CCeEEEecCC
Q psy952          167 --RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH----KHIVISGQKVPHVFALTLF--EDHIYWTDWN  238 (573)
Q Consensus       167 --~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~----~~~l~~~~~~~~p~~ia~~--~~~lywtd~~  238 (573)
                        .++   .....|.++++++.+++||++....+.|..+++....    ...+..+   ..|.+|++.  +.+||++...
T Consensus       168 ~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~  241 (331)
T 3u4y_A          168 GQEFI---SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTES  241 (331)
T ss_dssp             EEEEE---CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSS
T ss_pred             CCccc---cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcC
Confidence              122   3345689999999888899999999999999987443    3333322   467778874  5569999888


Q ss_pred             CCceEEEeccCCcc
Q psy952          239 TKSINRADKFNGRD  252 (573)
Q Consensus       239 ~~~I~~~~~~~g~~  252 (573)
                      .+.|..++..+++.
T Consensus       242 ~~~i~~~d~~~~~~  255 (331)
T 3u4y_A          242 TVDVFNFNQLSGTL  255 (331)
T ss_dssp             EEEEEEEETTTTEE
T ss_pred             CCEEEEEECCCCce
Confidence            88899998777654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.49  E-value=2.2e-12  Score=132.04  Aligned_cols=225  Identities=9%  Similarity=0.104  Sum_probs=152.9

Q ss_pred             EEEEe-cccEEEEEcCCCceee-------cccCCcceEEEEEEcC---CCEEEEEECC-------CCeEEEEEcCCC---
Q psy952           19 LIFSN-KYYVRNMSLDATQYSL-------VHQDLLNVVAMDFHYK---ENRFYFADVA-------AKTIYRSRVGST---   77 (573)
Q Consensus        19 l~~s~-~~~I~~i~l~g~~~~~-------~~~~~~~~~~v~~d~~---~~~ly~~d~~-------~~~I~~~~~~g~---   77 (573)
                      |+++. ...|++++.++...+.       .......+.+|++++.   +++||+++..       ..+|.|+.+++.   
T Consensus        32 l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~  111 (353)
T 2g8s_A           32 MLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAVGYGRLSDDLSK  111 (353)
T ss_dssp             EEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEEEEEEECTTSSB
T ss_pred             EEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEEEEEEECCCCCC
Confidence            66665 4688888876642211       1223456899999986   8999999764       358999988653   


Q ss_pred             --cceEEEcC------CCCCcceeEEeecCCcEEEEeCC-------------CCeEEEEEcCCC-------------cee
Q psy952           78 --EKERVIRH------DSHGLEGLAVDWVGRKLYWLDRH-------------SKQLDVAELDGT-------------NRK  123 (573)
Q Consensus        78 --~~~~i~~~------~~~~p~glavD~~~~~LY~td~~-------------~~~I~~~~ldg~-------------~~~  123 (573)
                        ..++++..      ..+.+.+|++++ .++||++...             .++|.+++.+|+             ..+
T Consensus       112 ~~~~~~i~~~~p~~~~~~h~~~~l~~~p-dG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~  190 (353)
T 2g8s_A          112 VTDFRTVFRQMPKLSTGNHFGGRLVFDG-KGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAE  190 (353)
T ss_dssp             EEEEEEEEECSSCCBSSSCCCCCEEECS-SSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTT
T ss_pred             CCceEEEEEECCCCCCCcccCccEEECC-CCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCcc
Confidence              23344321      235688999997 5599999633             468999999987             344


Q ss_pred             EeccCCCCcceEEEeCCCceEEEEecCCc--CeEEEEeccCCC----------------------------cEEEEecCC
Q psy952          124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQ--AYIGKIGMDGSN----------------------------FTRILTHED  173 (573)
Q Consensus       124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~--~~I~r~~ldG~~----------------------------~~~l~~~~~  173 (573)
                      ++..++.+|.+|++||..|.||+++.+..  ..|.++...+..                            ..++.  ..
T Consensus       191 i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~--~~  268 (353)
T 2g8s_A          191 IWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFY--WK  268 (353)
T ss_dssp             EEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEE--ES
T ss_pred             EEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEE--eC
Confidence            55568889999999998899999997632  244443221110                            00000  01


Q ss_pred             CCCCCceEEEec------cCCeEEEEeCCCCeEEEEeCCCCcE---EEEEeCCccceeEEEeee-CCeEEEe-cCCCCce
Q psy952          174 DIAWPNALTLDY------FTERLYWADAHLDYIASVDLDGKHK---HIVISGQKVPHVFALTLF-EDHIYWT-DWNTKSI  242 (573)
Q Consensus       174 ~l~~P~glaiD~------~~~~LYw~D~~~~~I~~~~~dG~~~---~~l~~~~~~~~p~~ia~~-~~~lywt-d~~~~~I  242 (573)
                      ....|.|+++..      ..+.||+++...++|.++++++...   ..++... ..+|.+|++. ++.||++ |..+++|
T Consensus       269 ~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~rp~~v~~~pdG~lyv~td~~~g~I  347 (353)
T 2g8s_A          269 DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDR-GQRIRDVRTGPDGYLYVLTDESSGEL  347 (353)
T ss_dssp             SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGG-CCCEEEEEECTTSCEEEEECSTTEEE
T ss_pred             CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCC-CCceeEEEECCCCcEEEEEeCCCCEE
Confidence            123688999974      2489999999999999999986432   1122221 4589999995 5689996 7788999


Q ss_pred             EEEec
Q psy952          243 NRADK  247 (573)
Q Consensus       243 ~~~~~  247 (573)
                      +|+.+
T Consensus       348 ~ri~~  352 (353)
T 2g8s_A          348 LKVSP  352 (353)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99853

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.48  E-value=6.1e-11  Score=122.10  Aligned_cols=243  Identities=12%  Similarity=0.090  Sum_probs=180.3

Q ss_pred             CEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      ++|+++.  .+.|+.+++........+.....+.+++|.+.++.||++....+.|+.+++........+..+ ..|.+++
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~   80 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVA   80 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceE
Confidence            3566665  478999999876554444555668999999999999999988889999998765544444433 3899999


Q ss_pred             EeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD  174 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~  174 (573)
                      +.+.++.||++....+.|.+.++........+.....|.+++++|...+||++.. ....|...++........+   ..
T Consensus        81 ~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~v~~~d~~~~~~~~~~---~~  156 (391)
T 1l0q_A           81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN-GDKTVSVINTVTKAVINTV---SV  156 (391)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEEEE---EC
T ss_pred             ECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeC-CCCEEEEEECCCCcEEEEE---ec
Confidence            9998899999998889999999987665555555557899999998888988874 3678888888655444333   22


Q ss_pred             CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee--CCeEEEecC--CCCceEEEeccCC
Q psy952          175 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF--EDHIYWTDW--NTKSINRADKFNG  250 (573)
Q Consensus       175 l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--~~~lywtd~--~~~~I~~~~~~~g  250 (573)
                      -..|..+++++.+.+||++....+.|...++........+..  ...+.++++.  +.+||++..  ..+.|...+..++
T Consensus       157 ~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec--CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            356799999998899999998889999999977655444443  3477888874  457888876  6788988887777


Q ss_pred             cceEEEcccCCCceeee
Q psy952          251 RDYRVLRNTTHRPYDIH  267 (573)
Q Consensus       251 ~~~~~l~~~~~~p~~i~  267 (573)
                      +....+... ..|..++
T Consensus       235 ~~~~~~~~~-~~~~~~~  250 (391)
T 1l0q_A          235 KITARIPVG-PDPAGIA  250 (391)
T ss_dssp             EEEEEEECC-SSEEEEE
T ss_pred             eEEEEEecC-CCccEEE
Confidence            655555432 2344443

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.48  E-value=1.5e-11  Score=124.08  Aligned_cols=225  Identities=11%  Similarity=0.138  Sum_probs=158.2

Q ss_pred             CEEEEEe--cccEEEEEcCCCceeecc-cCCcceEEEEEEcCCCEEEEEECCC----CeEEEEEcCCCcceEEEcC--CC
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSLVH-QDLLNVVAMDFHYKENRFYFADVAA----KTIYRSRVGSTEKERVIRH--DS   87 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~~~-~~~~~~~~v~~d~~~~~ly~~d~~~----~~I~~~~~~g~~~~~i~~~--~~   87 (573)
                      .-|+++.  ...|+++++++.....+. .....|.+|++++ +++||++....    +.|+++++++.....++..  ..
T Consensus        56 g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  134 (333)
T 2dg1_A           56 GQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTA  134 (333)
T ss_dssp             SCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSC
T ss_pred             CCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccC
Confidence            3455553  467999998876654432 3446699999996 56799998766    6899999988766544431  23


Q ss_pred             CCcceeEEeecCCcEEEEeCC------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEec-
Q psy952           88 HGLEGLAVDWVGRKLYWLDRH------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM-  160 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l-  160 (573)
                      ..|.+|++|+ .++||+++..      .+.|+++++++...+.+...+..|.+|+++|...+||+++.. ...|.+.++ 
T Consensus       135 ~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~-~~~i~~~d~~  212 (333)
T 2dg1_A          135 YCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT-ANRLHRIALE  212 (333)
T ss_dssp             CCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG-GTEEEEEEEC
T ss_pred             CcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCC-CCeEEEEEec
Confidence            5789999997 5689999864      467999998876555555566679999999977789999853 568998888 


Q ss_pred             -cCCCcEE-----EEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCc----cceeEEEeee--
Q psy952          161 -DGSNFTR-----ILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK----VPHVFALTLF--  228 (573)
Q Consensus       161 -dG~~~~~-----l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~----~~~p~~ia~~--  228 (573)
                       +|.....     +.. ......|.+|++|+ +++||+++...+.|.+++.+|.....+.....    +..|.++++.  
T Consensus       213 ~~g~~~~~~~~~~~~~-~~~~~~~~~i~~d~-~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~d  290 (333)
T 2dg1_A          213 DDGVTIQPFGATIPYY-FTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPG  290 (333)
T ss_dssp             TTSSSEEEEEEEEEEE-CCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             CCCcCcccccceEEEe-cCCCCCCCceEECC-CCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCC
Confidence             4443322     111 12234789999995 57899999888899999998876665543210    1268888884  


Q ss_pred             CCeEEEecCC-----CCceEEEe
Q psy952          229 EDHIYWTDWN-----TKSINRAD  246 (573)
Q Consensus       229 ~~~lywtd~~-----~~~I~~~~  246 (573)
                      ++.||++...     .+.|++++
T Consensus       291 g~~L~v~~~~g~~~~~~~l~~~~  313 (333)
T 2dg1_A          291 TNQLIICSNDIEMGGGSMLYTVN  313 (333)
T ss_dssp             SCEEEEEEECGGGTCCEEEEEEE
T ss_pred             CCEEEEEeCccCCCCCceEEEEe
Confidence            3578888654     23566665

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.47  E-value=6.7e-11  Score=121.82  Aligned_cols=244  Identities=13%  Similarity=0.100  Sum_probs=181.2

Q ss_pred             ceeeCCCCCCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952            8 TCKRRDSIKPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      .+.+......+|+++.  .+.|+.+++...+....+.....+.+++|++.++.||++....+.|+.+++.+......+..
T Consensus        35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~  114 (391)
T 1l0q_A           35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT  114 (391)
T ss_dssp             EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC
Confidence            4444443345666664  57899999876655444444457899999999999999998889999999987655444443


Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF  165 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~  165 (573)
                      + ..+.++++.+.++.||++....+.|.+.++........+.....|.+++++|...+||++.. ....|...++.....
T Consensus       115 ~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~-~~~~v~~~d~~~~~~  192 (391)
T 1l0q_A          115 G-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANF-DSMSISVIDTVTNSV  192 (391)
T ss_dssp             S-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEET-TTTEEEEEETTTTEE
T ss_pred             C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeC-CCCEEEEEECCCCeE
Confidence            3 57899999988888999998889999999876554444444567899999998889998874 356788888876544


Q ss_pred             EEEEecCCCCCCCceEEEeccCCeEEEEeC--CCCeEEEEeCCCCcEEEEEeCCccceeEEEeee--CCeEEEecCCCCc
Q psy952          166 TRILTHEDDIAWPNALTLDYFTERLYWADA--HLDYIASVDLDGKHKHIVISGQKVPHVFALTLF--EDHIYWTDWNTKS  241 (573)
Q Consensus       166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~  241 (573)
                      ...+   ..-..|.++++++.+.+||++..  ..+.|...++........+..  ...|.++++.  +.+||++....+.
T Consensus       193 ~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~s~~~d~~  267 (391)
T 1l0q_A          193 IDTV---KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFXNT  267 (391)
T ss_dssp             EEEE---ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             EEEE---ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEec--CCCccEEEEccCCCEEEEEcCCCCE
Confidence            4444   22346789999998899999986  678999999876554444433  2357888874  5579899888899


Q ss_pred             eEEEeccCCcceEEEcc
Q psy952          242 INRADKFNGRDYRVLRN  258 (573)
Q Consensus       242 I~~~~~~~g~~~~~l~~  258 (573)
                      |...+..+++....+..
T Consensus       268 v~v~d~~~~~~~~~~~~  284 (391)
T 1l0q_A          268 VSVIDTATNTITATMAV  284 (391)
T ss_dssp             EEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEEC
Confidence            99999888876666644

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.43  E-value=4.4e-11  Score=121.34  Aligned_cols=227  Identities=13%  Similarity=0.065  Sum_probs=150.0

Q ss_pred             ccEEEEEcCCCceeec---ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cceEEE---cCC--------CCC
Q psy952           25 YYVRNMSLDATQYSLV---HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EKERVI---RHD--------SHG   89 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~---~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~i~---~~~--------~~~   89 (573)
                      ..|+.+++++...+.+   ......|.+|+|++.++.||+++...+.|..++++.. ....+.   ..+        ...
T Consensus        63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~  142 (347)
T 3hfq_A           63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSH  142 (347)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCC
T ss_pred             ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCC
Confidence            5788888865544332   2245668899999999999999988888888887532 222221   111        124


Q ss_pred             cceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEe----ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC--
Q psy952           90 LEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTL----KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG--  162 (573)
Q Consensus        90 p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l----~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG--  162 (573)
                      |.++++++.++ ||+++...+.|.+++++ ......+    ......|++|+++|...+||+++.. ...|....++.  
T Consensus       143 ~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~-~~~v~v~~~~~~~  220 (347)
T 3hfq_A          143 IHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGEL-SSQIASLKYDTQT  220 (347)
T ss_dssp             EEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TTEEEEEEEETTT
T ss_pred             ceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCC-CCEEEEEEecCCC
Confidence            77899998777 99999988999999987 2222221    1233469999999987789998754 45666666664  


Q ss_pred             CCcEEEEecCC-C-----CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC-cEEEEEe--CCccceeEEEeee--CCe
Q psy952          163 SNFTRILTHED-D-----IAWPNALTLDYFTERLYWADAHLDYIASVDLDGK-HKHIVIS--GQKVPHVFALTLF--EDH  231 (573)
Q Consensus       163 ~~~~~l~~~~~-~-----l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~-~~~~l~~--~~~~~~p~~ia~~--~~~  231 (573)
                      ...+.+..... .     ...|.+|++++++++||++....+.|..++++.. ..+.+..  .. ...|.+|++.  +.+
T Consensus       221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~spdg~~  299 (347)
T 3hfq_A          221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTE-GDFPRDFDLDPTEAF  299 (347)
T ss_dssp             TEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECS-SSCCCEEEECTTSSE
T ss_pred             CceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecC-CCCcCeEEECCCCCE
Confidence            22111110011 1     1357889999999999999988888888887622 2222222  11 2368888884  557


Q ss_pred             EEEecCCCCceEEE--eccCCcceE
Q psy952          232 IYWTDWNTKSINRA--DKFNGRDYR  254 (573)
Q Consensus       232 lywtd~~~~~I~~~--~~~~g~~~~  254 (573)
                      ||+++...+.|...  +..+|+...
T Consensus       300 l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          300 VVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            99999887766554  655665443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.42  E-value=6.4e-11  Score=119.57  Aligned_cols=218  Identities=12%  Similarity=0.142  Sum_probs=150.6

Q ss_pred             CCCEEEEEec--ccEEEEEcCCCceeec-------ccCCcceEEEEEEcC---CCEEEEEEC--CCCeEEEEEcCCC---
Q psy952           15 IKPWLIFSNK--YYVRNMSLDATQYSLV-------HQDLLNVVAMDFHYK---ENRFYFADV--AAKTIYRSRVGST---   77 (573)
Q Consensus        15 ~~~~l~~s~~--~~I~~i~l~g~~~~~~-------~~~~~~~~~v~~d~~---~~~ly~~d~--~~~~I~~~~~~g~---   77 (573)
                      +..-|+++.+  ..|++++.++...+.+       ..+...+.+|++++.   ++.||++..  ..++|.|+.+++.   
T Consensus        41 pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~  120 (347)
T 3das_A           41 PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPS  120 (347)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCT
T ss_pred             CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcc
Confidence            3445677764  6799998764433221       234667899999984   789998753  4568999998762   


Q ss_pred             -----cceEEEc----CCCCCcceeEEeecCCcEEEEeC-------------CCCeEEEEEcCCC--------ceeEecc
Q psy952           78 -----EKERVIR----HDSHGLEGLAVDWVGRKLYWLDR-------------HSKQLDVAELDGT--------NRKTLKT  127 (573)
Q Consensus        78 -----~~~~i~~----~~~~~p~glavD~~~~~LY~td~-------------~~~~I~~~~ldg~--------~~~~l~~  127 (573)
                           ..++|+.    ...+....|++++ .++||++-.             ..++|.+++.+|+        ..+++..
T Consensus       121 ~~~~~~~~~i~~~~p~~~~H~g~~l~fgp-DG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~  199 (347)
T 3das_A          121 GEQLGAPDTVFRGIPKGVIHNGGRIAFGP-DKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSY  199 (347)
T ss_dssp             TCCBCCCEEEEEEECCCSSCCCCCEEECT-TSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEB
T ss_pred             cccCCCcEEEEEcCCCCCCccCccccCCC-CCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEee
Confidence                 2344442    2345677899997 568999942             3589999999997        4455667


Q ss_pred             CCCCcceEEEeCCCceEEEEecCCc--CeEEEEeccCCCc---------------EEEEecCCCCCCCceEEEeccCCeE
Q psy952          128 AIQDPRGITLHPGIGYVYFSSWNLQ--AYIGKIGMDGSNF---------------TRILTHEDDIAWPNALTLDYFTERL  190 (573)
Q Consensus       128 ~~~~P~~Iavdp~~g~LYwtd~~~~--~~I~r~~ldG~~~---------------~~l~~~~~~l~~P~glaiD~~~~~L  190 (573)
                      ++.+|.+|++|| .|.||+++.+..  ..|.++.. |.+.               ..++........|.||++.  .+.|
T Consensus       200 G~RNp~Gla~dp-~G~L~~~d~g~~~~deln~i~~-G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~  275 (347)
T 3das_A          200 GHRNVQGLAWDD-KQRLFASEFGQDTWDELNAIKP-GDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSV  275 (347)
T ss_dssp             CCSBCCEEEECT-TCCEEEEECCSSSCEEEEEECT-TCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEE
T ss_pred             CCCCcceEEECC-CCCEEEEecCCCCCceeeEEcC-CCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCce
Confidence            999999999999 699999997642  34555543 2220               0001001122468899997  7899


Q ss_pred             EEEeCCCCeEEEEeCCCCc----EEEEEeCCccceeEEEee-eCCeEEEecCC
Q psy952          191 YWADAHLDYIASVDLDGKH----KHIVISGQKVPHVFALTL-FEDHIYWTDWN  238 (573)
Q Consensus       191 Yw~D~~~~~I~~~~~dG~~----~~~l~~~~~~~~p~~ia~-~~~~lywtd~~  238 (573)
                      |.+.....+|.++.+++..    .+.++.+. ..+|.+|++ -++.||+++..
T Consensus       276 ~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~-~gR~~dv~~~pDG~lyv~td~  327 (347)
T 3das_A          276 WMAGLRGERLWRIPLKGTAAAADPQAFLEGE-YGRLRTVAPAGGDKLWLVTSN  327 (347)
T ss_dssp             EEEESTTCSEEEEEEETTEESSCCEEESTTT-SSCEEEEEEEETTEEEEEECT
T ss_pred             eeccccCCEEEEEEecCCceecceEEeecCC-CCCccEEEECCCCcEEEEEcC
Confidence            9999999999999987653    24444443 578999998 47899998543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.41  E-value=2.6e-10  Score=114.57  Aligned_cols=254  Identities=11%  Similarity=0.094  Sum_probs=165.2

Q ss_pred             CCEEEEEec--ccEEEEEcC--CCceeec--ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC-CCcceEE-EcCCC
Q psy952           16 KPWLIFSNK--YYVRNMSLD--ATQYSLV--HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG-STEKERV-IRHDS   87 (573)
Q Consensus        16 ~~~l~~s~~--~~I~~i~l~--g~~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~i-~~~~~   87 (573)
                      ..+|+++..  ..|+.++++  +.....+  +.....|.+|+|++.++.||++....+.|..++++ +...+.+ .....
T Consensus        49 g~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~  128 (343)
T 1ri6_A           49 KRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL  128 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC
Confidence            356777665  678877776  4443322  22233788999999999999999888888888873 2211211 12234


Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcCC-CceeE-----ec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG-TNRKT-----LK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM  160 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg-~~~~~-----l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l  160 (573)
                      ..|.++++++.++.||+++...+.|.+.++.. .....     +. .....|++|+++|...+||++... ...|...++
T Consensus       129 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-~~~i~~~~~  207 (343)
T 1ri6_A          129 DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-NSSVDVWEL  207 (343)
T ss_dssp             TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-TTEEEEEES
T ss_pred             CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC-CCEEEEEEe
Confidence            57999999998889999997788999998865 32221     11 234579999999988889999843 567888887


Q ss_pred             cC--CCcE---EEEecCC---CCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC--CCcEEEEEeCCccceeEEEeee--
Q psy952          161 DG--SNFT---RILTHED---DIAWPNALTLDYFTERLYWADAHLDYIASVDLD--GKHKHIVISGQKVPHVFALTLF--  228 (573)
Q Consensus       161 dG--~~~~---~l~~~~~---~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~l~~~~~~~~p~~ia~~--  228 (573)
                      +.  ...+   .+.....   ....|.+|++++.+++||++....+.|..++++  +...+.+..-.....|.++++.  
T Consensus       208 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~d  287 (343)
T 1ri6_A          208 KDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHS  287 (343)
T ss_dssp             SCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTT
T ss_pred             cCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCC
Confidence            53  2221   1110011   133566899999888999999888889888887  4444433221001247788874  


Q ss_pred             CCeEEEecCCCCceEEE--eccCCcceEEEc-ccCCCceeeeeee
Q psy952          229 EDHIYWTDWNTKSINRA--DKFNGRDYRVLR-NTTHRPYDIHVYH  270 (573)
Q Consensus       229 ~~~lywtd~~~~~I~~~--~~~~g~~~~~l~-~~~~~p~~i~v~~  270 (573)
                      +.+||++....+.|...  +..+|+...+.. .....|..|++..
T Consensus       288 g~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~  332 (343)
T 1ri6_A          288 GKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNA  332 (343)
T ss_dssp             SSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEE
T ss_pred             CCEEEEecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEc
Confidence            56799998777766544  655665433221 1125688877654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.39  E-value=9.8e-11  Score=117.63  Aligned_cols=210  Identities=12%  Similarity=0.049  Sum_probs=150.5

Q ss_pred             EEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCC
Q psy952           51 DFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAI  129 (573)
Q Consensus        51 ~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~  129 (573)
                      .|+...+.+|+++...+.|..+++........+..+...| +|++++.++.||++....+.|.++++.+... ...+...
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            4667789999999999999999998765554555555667 9999998889999999888999999976654 4444555


Q ss_pred             CCcce-EEEeCCCceEEEEecCCcC--eEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe-EEEEeC
Q psy952          130 QDPRG-ITLHPGIGYVYFSSWNLQA--YIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY-IASVDL  205 (573)
Q Consensus       130 ~~P~~-Iavdp~~g~LYwtd~~~~~--~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~-I~~~~~  205 (573)
                      ..|.. |+++|...+||.+. ....  .|...+++.......+   .....|.++++++.+++||+++...+. |..+++
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~-~~~~~~~i~v~d~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~  158 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVT-GLNHPFNMQSYSFLKNKFISTI---PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKI  158 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECC-CSSSSCEEEEEETTTTEEEEEE---ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCccceEECCCCCEEEEec-CCCCcccEEEEECCCCCeEEEE---ECCCCccceEECCCCCEEEEEecCCCceEEEEEE
Confidence            67888 99999888899444 2223  8999988765544434   234568999999988899999988777 776666


Q ss_pred             CCCcE-----EEEEeCCccceeEEEeee--CCeEEEecCCCCceEEEeccCCcc---eEEEcccCCCceeeee
Q psy952          206 DGKHK-----HIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNGRD---YRVLRNTTHRPYDIHV  268 (573)
Q Consensus       206 dG~~~-----~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~~g~~---~~~l~~~~~~p~~i~v  268 (573)
                      +....     ..++..  ...|.++++.  +.+||++....+.|...+..+++.   ...+... ..|.++++
T Consensus       159 ~~~g~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~  228 (331)
T 3u4y_A          159 DADGVLFDTGQEFISG--GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVV  228 (331)
T ss_dssp             CTTCCEEEEEEEEECS--SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEE
T ss_pred             CCCCcEeecCCccccC--CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEE
Confidence            53221     111222  3468888884  446999999999999999878876   4444432 34555543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.39  E-value=5.1e-11  Score=118.03  Aligned_cols=199  Identities=11%  Similarity=0.077  Sum_probs=141.3

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-------CCcceeEE---eecCCcEEE-EeC-----
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-------HGLEGLAV---DWVGRKLYW-LDR-----  107 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-------~~p~glav---D~~~~~LY~-td~-----  107 (573)
                      ...|.+++||..++++|+++...+.|.++++++...+.+...++       ..|.||.+   |+. ++|++ ++.     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEccccccc
Confidence            34589999999999999999999999999998654444433332       25789999   675 77877 552     


Q ss_pred             -------CCCeEEEEEcC----CCceeEe-cc------------CCCCcceEEEeCCCceEEEEecCCc-CeEEEEeccC
Q psy952          108 -------HSKQLDVAELD----GTNRKTL-KT------------AIQDPRGITLHPGIGYVYFSSWNLQ-AYIGKIGMDG  162 (573)
Q Consensus       108 -------~~~~I~~~~ld----g~~~~~l-~~------------~~~~P~~Iavdp~~g~LYwtd~~~~-~~I~r~~ldG  162 (573)
                             +.+.|.+++++    |.....+ ++            ....|.+||+|+ .|++|+++.. . +.|+|++.||
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~-~~~~I~rV~pdG  168 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFAL-GMPAIARVSADG  168 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEE-SSCEEEEECTTS
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCC-CCCeEEEEeCCC
Confidence                   35679999998    4333221 11            112489999999 7999999864 5 8899999999


Q ss_pred             CCcEEEEecC---CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEE-e--C--CccceeEEE-ee-eCCeE
Q psy952          163 SNFTRILTHE---DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI-S--G--QKVPHVFAL-TL-FEDHI  232 (573)
Q Consensus       163 ~~~~~l~~~~---~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~-~--~--~~~~~p~~i-a~-~~~~l  232 (573)
                      +....+....   .....++||++.+.+..|++++. .++|.++++....+..+. .  +  ..+..|.+| ++ .++.+
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v  247 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES  247 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence            9665544201   12334789999999999999998 999999999843221122 1  2  126788996 54 57766


Q ss_pred             -EEecCCCCceEEEe
Q psy952          233 -YWTDWNTKSINRAD  246 (573)
Q Consensus       233 -ywtd~~~~~I~~~~  246 (573)
                       ++++...+.+...+
T Consensus       248 llV~~~~~~~~~l~S  262 (334)
T 2p9w_A          248 VLVGARAPYAISFRS  262 (334)
T ss_dssp             EEEEEETTEEEEEEC
T ss_pred             EEEEcCCCCEEEEEC
Confidence             99987766554444

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.39  E-value=6.4e-11  Score=123.29  Aligned_cols=243  Identities=9%  Similarity=-0.006  Sum_probs=154.7

Q ss_pred             CEEEEEec------ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEEC---------CCCeEEEEEcCCCcc-e
Q psy952           17 PWLIFSNK------YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV---------AAKTIYRSRVGSTEK-E   80 (573)
Q Consensus        17 ~~l~~s~~------~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~-~   80 (573)
                      ..+|+++.      +.|.+|++...++...+.....| +|++++.+++||+++.         ..+.|..+++..... .
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~  163 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIA  163 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred             CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEE
Confidence            46777775      68999999877654444444568 9999999999999985         356799998876443 2


Q ss_pred             EEEcC-C-----CCCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCCcee-Eecc-C--CCCcce----EEEeCCCceEE
Q psy952           81 RVIRH-D-----SHGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGTNRK-TLKT-A--IQDPRG----ITLHPGIGYVY  145 (573)
Q Consensus        81 ~i~~~-~-----~~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~~~~-~l~~-~--~~~P~~----Iavdp~~g~LY  145 (573)
                      .|... .     ...|.+|+|++.+++||+++.. .+.|.++|+...... .+.- +  ...|.+    +++.+....+|
T Consensus       164 ~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~  243 (426)
T 3c75_H          164 DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLAR  243 (426)
T ss_dssp             EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEE
T ss_pred             EEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEE
Confidence            23221 0     2579999999999999999975 688999998764432 2211 1  112223    45554333333


Q ss_pred             EEecCC------------------------------------cCeEEEEeccCCCcEEEEe--cC--CC---CCCCce--
Q psy952          146 FSSWNL------------------------------------QAYIGKIGMDGSNFTRILT--HE--DD---IAWPNA--  180 (573)
Q Consensus       146 wtd~~~------------------------------------~~~I~r~~ldG~~~~~l~~--~~--~~---l~~P~g--  180 (573)
                      ++. ..                                    .+.++++++.+....++..  ..  ..   ...|.|  
T Consensus       244 V~~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~  322 (426)
T 3c75_H          244 VDF-ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ  322 (426)
T ss_dssp             EEC-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred             EEC-CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence            322 11                                    1234444444333221110  00  00   012455  


Q ss_pred             -EEEeccCCeEEEEeCC---------CCeEEEEeCCCCcE-EEEEeCCccceeEEEeee--CC-eEEEecCCCCceEEEe
Q psy952          181 -LTLDYFTERLYWADAH---------LDYIASVDLDGKHK-HIVISGQKVPHVFALTLF--ED-HIYWTDWNTKSINRAD  246 (573)
Q Consensus       181 -laiD~~~~~LYw~D~~---------~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~--~~-~lywtd~~~~~I~~~~  246 (573)
                       +++++++++||++...         .+.|..+|.....+ ..|..+   ..|.+|++.  +. .||++.+..+.|..++
T Consensus       323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID  399 (426)
T 3c75_H          323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYD  399 (426)
T ss_dssp             CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence             8999999999999742         35799999875544 333323   269999884  55 7999999999999999


Q ss_pred             ccCCcceEEEcccCCCce
Q psy952          247 KFNGRDYRVLRNTTHRPY  264 (573)
Q Consensus       247 ~~~g~~~~~l~~~~~~p~  264 (573)
                      ..+++.+..+...-..|.
T Consensus       400 ~~t~kvv~tI~~vG~~P~  417 (426)
T 3c75_H          400 AATGEELRSVDQLGRGPQ  417 (426)
T ss_dssp             TTTCCEEEEECCCSSSCC
T ss_pred             CCCCCEEEEecCCCCCCc
Confidence            999988877633233454

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.38  E-value=1.1e-10  Score=118.48  Aligned_cols=218  Identities=12%  Similarity=0.051  Sum_probs=142.4

Q ss_pred             EEEEEcCCCceee--cccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEc--CCCCCcceeEEeecCC
Q psy952           27 VRNMSLDATQYSL--VHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIR--HDSHGLEGLAVDWVGR  100 (573)
Q Consensus        27 I~~i~l~g~~~~~--~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~--~~~~~p~glavD~~~~  100 (573)
                      |+.++.....++.  .......|.+|+|++.++ ||+++..  .+.|+.+++++...+.+..  .....|.+|++++.++
T Consensus        20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~   98 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQ   98 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTT
T ss_pred             EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCC
Confidence            4444444343332  233456789999998555 9999864  5789999986654433322  2346899999999888


Q ss_pred             cEEEEeCCCCeEEEEEcC--CCceeE--ecc---------CCCCcceEEEeCCCceEEEEecCCcCeEEEEecc--CCCc
Q psy952          101 KLYWLDRHSKQLDVAELD--GTNRKT--LKT---------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD--GSNF  165 (573)
Q Consensus       101 ~LY~td~~~~~I~~~~ld--g~~~~~--l~~---------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld--G~~~  165 (573)
                      .||+++...+.|.+.+++  |.....  +..         ....|.+++++|... ||+++.+ ...|...+++  |...
T Consensus        99 ~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~-~~~v~~~~~~~~g~~~  176 (347)
T 3hfq_A           99 LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLG-SDKVYVYNVSDAGQLS  176 (347)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETT-TTEEEEEEECTTSCEE
T ss_pred             EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCC-CCEEEEEEECCCCcEE
Confidence            999999888889888875  332211  111         122477899999655 9999864 4567777766  3322


Q ss_pred             EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC--CcEEEEEe--CCc-----cceeEEEeee--CCeEEE
Q psy952          166 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG--KHKHIVIS--GQK-----VPHVFALTLF--EDHIYW  234 (573)
Q Consensus       166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG--~~~~~l~~--~~~-----~~~p~~ia~~--~~~lyw  234 (573)
                      ............|.++++++++++||+++...+.|..++++.  ...+.+..  ...     ...|.+|++.  +.+||+
T Consensus       177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v  256 (347)
T 3hfq_A          177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYV  256 (347)
T ss_dssp             EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEE
T ss_pred             EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEE
Confidence            111100233447889999998888999999888888887764  22222221  110     1358888884  457999


Q ss_pred             ecCCCCceEEEec
Q psy952          235 TDWNTKSINRADK  247 (573)
Q Consensus       235 td~~~~~I~~~~~  247 (573)
                      ++...+.|...+.
T Consensus       257 ~~~~~~~v~v~~~  269 (347)
T 3hfq_A          257 SNRGYNTLAVFAV  269 (347)
T ss_dssp             EEETTTEEEEEEE
T ss_pred             EeCCCCEEEEEEE
Confidence            9988888877764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.37  E-value=4.1e-10  Score=113.68  Aligned_cols=212  Identities=10%  Similarity=0.032  Sum_probs=147.7

Q ss_pred             CEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC----CCCc
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD----SHGL   90 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~----~~~p   90 (573)
                      ..|++++  ...|+++++++....... ....+.+|++++ ++++|++.  ...|+++++++...+.+....    ...|
T Consensus        61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~~i~~~~-dg~l~v~~--~~gl~~~d~~~g~~~~~~~~~~~~~~~~~  136 (326)
T 2ghs_A           61 GTAWWFNILERELHELHLASGRKTVHA-LPFMGSALAKIS-DSKQLIAS--DDGLFLRDTATGVLTLHAELESDLPGNRS  136 (326)
T ss_dssp             TEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEEEEEEEE-TTEEEEEE--TTEEEEEETTTCCEEEEECSSTTCTTEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCcEEEEE-CCCcceEEEEeC-CCeEEEEE--CCCEEEEECCCCcEEEEeeCCCCCCCCCC
Confidence            4666665  468999998876544332 224688999996 57788776  345999998766555454321    2468


Q ss_pred             ceeEEeecCCcEEEEeCC------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc---
Q psy952           91 EGLAVDWVGRKLYWLDRH------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD---  161 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld---  161 (573)
                      .++++|+ .++||+++..      .+.|++++ +|.. +.+...+..|.+|+++|....|||++.. ...|++.+++   
T Consensus       137 ~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~-~~~I~~~d~~~~~  212 (326)
T 2ghs_A          137 NDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIPNSICFSPDGTTGYFVDTK-VNRLMRVPLDART  212 (326)
T ss_dssp             EEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSEEEEEECTTSCEEEEEETT-TCEEEEEEBCTTT
T ss_pred             CCEEECC-CCCEEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECC-CCEEEEEEccccc
Confidence            8999997 4568888742      46788888 6543 3344556679999999988899999854 5689999875   


Q ss_pred             C-C--CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee---CCeEEEe
Q psy952          162 G-S--NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF---EDHIYWT  235 (573)
Q Consensus       162 G-~--~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~---~~~lywt  235 (573)
                      | .  .++++.........|.+|++|. +++||++....+.|.+++.+|...+.+...  ...|.++++.   ++.||++
T Consensus       213 Gl~~~~~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~~g~~~~~i~~~--~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          213 GLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTDGNHIARYEVP--GKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTTCCEEEEEECS--CSBEEEEEEESTTSCEEEEE
T ss_pred             CCcccCceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECCCCCEEEEEECC--CCCcEEEEEecCCCCEEEEE
Confidence            4 2  2234432122345689999994 568999998888999999987665555433  3478999985   2578888


Q ss_pred             cCCC
Q psy952          236 DWNT  239 (573)
Q Consensus       236 d~~~  239 (573)
                      ....
T Consensus       290 ~~~~  293 (326)
T 2ghs_A          290 SARE  293 (326)
T ss_dssp             EBCT
T ss_pred             ecCC
Confidence            6554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.36  E-value=6.6e-11  Score=119.95  Aligned_cols=194  Identities=9%  Similarity=0.009  Sum_probs=136.4

Q ss_pred             CcceEEEEEEcCCCEEEEEE------------CCCCeEEEEEcCCC--cceEEEcCC------CCCcceeEEeec---CC
Q psy952           44 LLNVVAMDFHYKENRFYFAD------------VAAKTIYRSRVGST--EKERVIRHD------SHGLEGLAVDWV---GR  100 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d------------~~~~~I~~~~~~g~--~~~~i~~~~------~~~p~glavD~~---~~  100 (573)
                      ...+..|++++ ++.+|.+-            ...++|++++++..  ..+.+...+      ...|.||.+...   ..
T Consensus        49 ~~G~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~  127 (355)
T 3sre_A           49 DNGSEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV  127 (355)
T ss_dssp             CSCCCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred             CCCcceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcE
Confidence            34688999986 78999986            25789999999742  223332222      248999999753   23


Q ss_pred             cEEEEeCC--CCeEEEEEcC--CCceeEec-----cCCCCcceEEEeCCCceEEEEecC----------------CcCeE
Q psy952          101 KLYWLDRH--SKQLDVAELD--GTNRKTLK-----TAIQDPRGITLHPGIGYVYFSSWN----------------LQAYI  155 (573)
Q Consensus       101 ~LY~td~~--~~~I~~~~ld--g~~~~~l~-----~~~~~P~~Iavdp~~g~LYwtd~~----------------~~~~I  155 (573)
                      +||+++..  ..+|++++++  +.. .+++     ..+..|+++++++ .|.+|+++..                ..+.|
T Consensus       128 ~L~Vvnh~~~~s~ielf~~d~~~~~-~~~~~~~~g~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v  205 (355)
T 3sre_A          128 YLLVVNHPGSSSTVEVFKFQEEEKS-LLHLKTIRHKLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFV  205 (355)
T ss_dssp             EEEEEECSTTCCEEEEEEEETTTTE-EEEEEEECCTTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred             EEEEEECCCCCCeEEEEEEECCCCE-EEEEeccccCCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEE
Confidence            69999976  4567666554  433 3333     2567799999999 6788877631                13578


Q ss_pred             EEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC----cEEEEEeCCccceeEEEeeeC--
Q psy952          156 GKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGK----HKHIVISGQKVPHVFALTLFE--  229 (573)
Q Consensus       156 ~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~----~~~~l~~~~~~~~p~~ia~~~--  229 (573)
                      +|.+..  ..+++.   +++..||||++++++++||++|+..++|+++++++.    +++++ .-  ...|.||+++.  
T Consensus       206 yr~d~~--~~~~~~---~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~--~g~PDGi~vD~e~  277 (355)
T 3sre_A          206 TYYSPN--DVRVVA---EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SF--DTLVDNISVDPVT  277 (355)
T ss_dssp             EEECTT--CCEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-EC--SSEEEEEEECTTT
T ss_pred             EEEECC--eEEEee---cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eC--CCCCceEEEeCCC
Confidence            888763  344444   678999999999999999999999999999998642    22333 22  36899999974  


Q ss_pred             CeEEEec-CCCCceEEEecc
Q psy952          230 DHIYWTD-WNTKSINRADKF  248 (573)
Q Consensus       230 ~~lywtd-~~~~~I~~~~~~  248 (573)
                      +.||++. |...+|.+.++.
T Consensus       278 G~lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          278 GDLWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             CCEEEEEESCHHHHHSCCTT
T ss_pred             CcEEEEecCCceEEEEECCC
Confidence            7888854 666667666544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.35  E-value=1.6e-09  Score=110.41  Aligned_cols=235  Identities=12%  Similarity=0.048  Sum_probs=152.2

Q ss_pred             CEEEEEec-----ccEEEEEcCC--Cceeec---ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-c----eE
Q psy952           17 PWLIFSNK-----YYVRNMSLDA--TQYSLV---HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-K----ER   81 (573)
Q Consensus        17 ~~l~~s~~-----~~I~~i~l~g--~~~~~~---~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~----~~   81 (573)
                      .+|+++..     ..|..+.++.  ..++.+   ......|..+++  .++.||+++...+.|..++++... .    ..
T Consensus        62 ~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~  139 (361)
T 3scy_A           62 KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV  139 (361)
T ss_dssp             SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE
T ss_pred             CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee
Confidence            46666665     3665555432  333322   223456888888  578899999888899988886421 1    11


Q ss_pred             EEcCC---------CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce--------------eEeccCCCCcceEEEe
Q psy952           82 VIRHD---------SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR--------------KTLKTAIQDPRGITLH  138 (573)
Q Consensus        82 i~~~~---------~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~--------------~~l~~~~~~P~~Iavd  138 (573)
                      +...+         ...|.++++++.++.||+++...+.|.+.+++....              .........|++++++
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s  219 (361)
T 3scy_A          140 IEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN  219 (361)
T ss_dssp             EECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC
T ss_pred             EEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc
Confidence            11111         123578999998888999999889999888764321              1122345679999999


Q ss_pred             CCCceEEEEecCCcCeEEEEeccCCCcEEEEe---cCCCCCCCceEEEeccCCeEEEEeCC-CCeEEEEeCC--CCcEEE
Q psy952          139 PGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT---HEDDIAWPNALTLDYFTERLYWADAH-LDYIASVDLD--GKHKHI  212 (573)
Q Consensus       139 p~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~---~~~~l~~P~glaiD~~~~~LYw~D~~-~~~I~~~~~d--G~~~~~  212 (573)
                      |...+||+++.. ...|...+++....+.+..   .......|.+|++++++++||+++.. .+.|..++++  ....+.
T Consensus       220 pdg~~l~v~~~~-~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~  298 (361)
T 3scy_A          220 SDGKFAYLINEI-GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTK  298 (361)
T ss_dssp             TTSSEEEEEETT-TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEE
T ss_pred             CCCCEEEEEcCC-CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEE
Confidence            988889999843 4567777776433222221   12234567899999999999999988 7888777765  233333


Q ss_pred             EEeCCccceeEEEeee--CCeEEEecCCCCceEE--EeccCCcceE
Q psy952          213 VISGQKVPHVFALTLF--EDHIYWTDWNTKSINR--ADKFNGRDYR  254 (573)
Q Consensus       213 l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~--~~~~~g~~~~  254 (573)
                      +.....-..|.+|++.  +.+||++....+.|..  ++..+|+...
T Consensus       299 ~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          299 VGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             EEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             eeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            2221002367888874  5679999877777655  6655665433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.34  E-value=8.5e-10  Score=110.77  Aligned_cols=228  Identities=10%  Similarity=0.074  Sum_probs=156.8

Q ss_pred             CEEEEEe--cccEEEEEcCC-Ccee--ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC--CCcceEE--EcCCC
Q psy952           17 PWLIFSN--KYYVRNMSLDA-TQYS--LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG--STEKERV--IRHDS   87 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g-~~~~--~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~--g~~~~~i--~~~~~   87 (573)
                      .+|+++.  .+.|+.++++. ....  ........+.+|+|++.++.||++....+.|..++++  +...+.+  +... 
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-   83 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-   83 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-
Confidence            4666663  46888888862 2222  2233455688999999999999999887888888876  4333322  2222 


Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeE--eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC--
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKT--LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG--  162 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~--l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG--  162 (573)
                      ..|.+|++++.++.||++....+.|.+.+++ |...+.  .+.....|.+++++|...+||+++.. ...|...+++.  
T Consensus        84 ~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~v~~~d~~~~~  162 (343)
T 1ri6_A           84 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-QDRICLFTVSDDG  162 (343)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-GTEEEEEEECTTS
T ss_pred             CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCC-CCEEEEEEecCCC
Confidence            3899999999888999999888889998883 322222  22455569999999988899999843 45677777764  


Q ss_pred             CCcE----EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC--CcE---EEEEeCC----ccceeEEEeee-
Q psy952          163 SNFT----RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG--KHK---HIVISGQ----KVPHVFALTLF-  228 (573)
Q Consensus       163 ~~~~----~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG--~~~---~~l~~~~----~~~~p~~ia~~-  228 (573)
                      ....    .+.  ......|.++++++.+.+||++....+.|..++++.  ...   ..+....    ....|.+|++. 
T Consensus       163 ~~~~~~~~~~~--~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~  240 (343)
T 1ri6_A          163 HLVAQDPAEVT--TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  240 (343)
T ss_dssp             CEEEEEEEEEE--CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             ceeeecccccc--cCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECC
Confidence            2222    122  233457889999998889999998889999999864  222   1222111    02356678874 


Q ss_pred             -CCeEEEecCCCCceEEEecc
Q psy952          229 -EDHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       229 -~~~lywtd~~~~~I~~~~~~  248 (573)
                       +.+||++....+.|...+..
T Consensus       241 dg~~l~v~~~~~~~i~v~d~~  261 (343)
T 1ri6_A          241 DGRHLYACDRTASLITVFSVS  261 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEecCCCEEEEEEEc
Confidence             45799998888888877754

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.34  E-value=6.2e-10  Score=108.08  Aligned_cols=195  Identities=11%  Similarity=0.048  Sum_probs=138.8

Q ss_pred             cceEEEEEEcCCCEEEEEEC--CCCeEEEEEcCCCcceEEEc-CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952           45 LNVVAMDFHYKENRFYFADV--AAKTIYRSRVGSTEKERVIR-HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~i~~-~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~  121 (573)
                      ..+.||+|++. ++||++..  ..+.|.++++........+. .....++|++++  +++||+++...+.|.++++....
T Consensus        21 ~f~~Gl~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~   97 (266)
T 2iwa_A           21 AFTQGLVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS   97 (266)
T ss_dssp             CCEEEEEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE
T ss_pred             CCcccEEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc
Confidence            35789999965 79999975  46799999998654433332 222355677776  78999999999999999987433


Q ss_pred             -eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecC---CCCCCCceEEEeccCCeEEEEeCCC
Q psy952          122 -RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE---DDIAWPNALTLDYFTERLYWADAHL  197 (573)
Q Consensus       122 -~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~---~~l~~P~glaiD~~~~~LYw~D~~~  197 (573)
                       ...+-.+  .|.|+.|.+..++||+++ + ..+|..++........-+...   ..+..|++|++.  +++||++.+..
T Consensus        98 v~~~i~~g--~~~g~glt~Dg~~l~vs~-g-s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~  171 (266)
T 2iwa_A           98 NIKNFTHQ--MKDGWGLATDGKILYGSD-G-TSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQT  171 (266)
T ss_dssp             EEEEEECC--SSSCCEEEECSSSEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTS
T ss_pred             EEEEEECC--CCCeEEEEECCCEEEEEC-C-CCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCC
Confidence             3333223  466677777788999998 4 578999988765433322101   134468898877  67999999999


Q ss_pred             CeEEEEeCCCCcE-EEEEeCC-----------ccceeEEEeee--CCeEEEecCCCCceEEEecc
Q psy952          198 DYIASVDLDGKHK-HIVISGQ-----------KVPHVFALTLF--EDHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       198 ~~I~~~~~dG~~~-~~l~~~~-----------~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~  248 (573)
                      +.|.++|+..... ..|....           ....|.||++.  +++||+|.....+|+.++..
T Consensus       172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            9999999965544 4443221           01368999996  46899999999999988743

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.30  E-value=2.6e-09  Score=109.90  Aligned_cols=244  Identities=11%  Similarity=0.011  Sum_probs=150.9

Q ss_pred             CEEEEEec--c----cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEEC---------CCCeEEEEEcCCCcc-e
Q psy952           17 PWLIFSNK--Y----YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV---------AAKTIYRSRVGSTEK-E   80 (573)
Q Consensus        17 ~~l~~s~~--~----~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~-~   80 (573)
                      .++++++.  .    .|.+++++.......++....| +|++.+.+++||+++.         ..+.|.++++..... .
T Consensus        33 ~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~  111 (373)
T 2mad_H           33 RRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA  111 (373)
T ss_pred             CEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE
Confidence            45666653  2    6788988765543333334457 9999999999999985         246788998864332 2


Q ss_pred             EEEcC-C-----CCCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCCceeEe-ccCCCCcceEEEeCCC-----------
Q psy952           81 RVIRH-D-----SHGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGTNRKTL-KTAIQDPRGITLHPGI-----------  141 (573)
Q Consensus        81 ~i~~~-~-----~~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~~~~~l-~~~~~~P~~Iavdp~~-----------  141 (573)
                      .+... .     ...|.++++++.++.||+++.. .+.|.+++ ........ +.   -|..+.+.|..           
T Consensus       112 ~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~dg  187 (373)
T 2mad_H          112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLS---SPTCYHIHPGAPSTFYLLCAQG  187 (373)
T ss_pred             EEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcC---CCceEEEEeCCCceEEEEcCCC
Confidence            22211 0     2469999999999999999865 68899998 65433222 21   11122222222           


Q ss_pred             -------------------------------------ceEEEEecCCcCeEEEEeccCCCcEEEEec---C----CCCCC
Q psy952          142 -------------------------------------GYVYFSSWNLQAYIGKIGMDGSNFTRILTH---E----DDIAW  177 (573)
Q Consensus       142 -------------------------------------g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~---~----~~l~~  177 (573)
                                                           +.+||...  ...+.++++.+...+++...   .    .....
T Consensus       188 ~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~  265 (373)
T 2mad_H          188 GLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--SGKILQADISAAGATNKAPIDALSGGRKADTWR  265 (373)
T ss_pred             CEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC--CceEEEEeccCCcceEeeeeeecCCccccccee
Confidence                                                 22233221  23445555543322221100   0    01113


Q ss_pred             Cce---EEEeccCCeEEEEeC---------CCCeEEEEeCCCCcE-EEEEeCCccceeEEEeee--CC-eEEEecCCCCc
Q psy952          178 PNA---LTLDYFTERLYWADA---------HLDYIASVDLDGKHK-HIVISGQKVPHVFALTLF--ED-HIYWTDWNTKS  241 (573)
Q Consensus       178 P~g---laiD~~~~~LYw~D~---------~~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~--~~-~lywtd~~~~~  241 (573)
                      |.|   +++++++++||++..         ..+.|..+|.....+ ..|..+   ..|.+|++.  +. .||.+.+..+.
T Consensus       266 p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g---~~p~~i~~s~Dg~~~l~v~~~~~~~  342 (373)
T 2mad_H          266 PGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEV  342 (373)
T ss_pred             cCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC---CCcCeEEECCCCCeEEEEEcCCCCe
Confidence            666   899999999999854         235799999876554 344323   258888884  55 68888888999


Q ss_pred             eEEEeccCCcceEEEcccCCCceeeeeee
Q psy952          242 INRADKFNGRDYRVLRNTTHRPYDIHVYH  270 (573)
Q Consensus       242 I~~~~~~~g~~~~~l~~~~~~p~~i~v~~  270 (573)
                      |..++..+++.+..+...-..|.+|.++.
T Consensus       343 V~ViD~~t~~vv~~i~~vG~~P~~~~~~~  371 (373)
T 2mad_H          343 LHIYDAGAGDQDQSTVELGSGPQVLSVMN  371 (373)
T ss_pred             EEEEECCCCCEEeeecCCCCCCcEEEEcc
Confidence            99999888888777443345788776643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.29  E-value=3.1e-09  Score=110.87  Aligned_cols=245  Identities=13%  Similarity=0.121  Sum_probs=172.9

Q ss_pred             CCEEEEEec--ccEEEEEcCCCceeecc------cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC
Q psy952           16 KPWLIFSNK--YYVRNMSLDATQYSLVH------QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS   87 (573)
Q Consensus        16 ~~~l~~s~~--~~I~~i~l~g~~~~~~~------~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~   87 (573)
                      ...++++..  +.|+.+++.........      .....+.++++. .++.+|++....+.|+.++++.......+....
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~  211 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTG  211 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSS
T ss_pred             CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCC
Confidence            556666653  46999999865443321      223457789995 578899999888999999997654433343344


Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC------cCeEEEEecc
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL------QAYIGKIGMD  161 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~------~~~I~r~~ld  161 (573)
                      ..|.++++++.++.||++....+.|.+.++........+.....|.+++++|...+||.+..+.      ...|...++.
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~  291 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD  291 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred             CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence            6899999999889999999888899999987655444444445699999999888898887531      4578888886


Q ss_pred             CCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee--CCeEEEecCCC
Q psy952          162 GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF--EDHIYWTDWNT  239 (573)
Q Consensus       162 G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~  239 (573)
                      .......+   ..-..|.++++++.++.||++....+.|...+++.......+..  ...|.++++.  +..||++....
T Consensus       292 ~~~~~~~~---~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~  366 (433)
T 3bws_A          292 KEKLIDTI---GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPV--FDKPNTIALSPDGKYLYVSCRGP  366 (433)
T ss_dssp             TTEEEEEE---EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEECCC
T ss_pred             CCcEEeec---cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecC--CCCCCeEEEcCCCCEEEEEecCC
Confidence            54433333   11236789999988889999999999999999986554433332  3468888885  45688887654


Q ss_pred             --------------CceEEEeccCCcceEEEcccCCCceeee
Q psy952          240 --------------KSINRADKFNGRDYRVLRNTTHRPYDIH  267 (573)
Q Consensus       240 --------------~~I~~~~~~~g~~~~~l~~~~~~p~~i~  267 (573)
                                    +.|+..+..+++....+.. ...|.+++
T Consensus       367 ~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~  407 (433)
T 3bws_A          367 NHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLD  407 (433)
T ss_dssp             CCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEE
T ss_pred             CccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEE
Confidence                          4788888777766655543 23444444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.29  E-value=2.3e-09  Score=107.31  Aligned_cols=225  Identities=8%  Similarity=-0.014  Sum_probs=150.1

Q ss_pred             ecccEEEEEcCCCceeecccCCc---ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-C----CCcceeE
Q psy952           23 NKYYVRNMSLDATQYSLVHQDLL---NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-S----HGLEGLA   94 (573)
Q Consensus        23 ~~~~I~~i~l~g~~~~~~~~~~~---~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-~----~~p~gla   94 (573)
                      ..+.|+.+++........+....   .+.+++|++.++.||++....+.|+.+++.+......+..+ .    ..|.+++
T Consensus         9 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (337)
T 1pby_B            9 RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceE
Confidence            35789999987655433222222   58899999988899999998899999998765443323222 1    2789999


Q ss_pred             EeecCCcEEEEeC-----------CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           95 VDWVGRKLYWLDR-----------HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        95 vD~~~~~LY~td~-----------~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      +++.++.||+++.           ..+.|.+.++.+......+.....|.+++++|...+||+++    ..|...++...
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~----~~i~~~d~~~~  164 (337)
T 1pby_B           89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG----RDLHVMDPEAG  164 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES----SSEEEEETTTT
T ss_pred             ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeC----CeEEEEECCCC
Confidence            9998889999962           35789999997655444444455699999999888899884    23444444322


Q ss_pred             CcEEEE------------------------------------------------------ec----------CCCCCCCc
Q psy952          164 NFTRIL------------------------------------------------------TH----------EDDIAWPN  179 (573)
Q Consensus       164 ~~~~l~------------------------------------------------------~~----------~~~l~~P~  179 (573)
                      .....+                                                      ..          ......|.
T Consensus       165 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~  244 (337)
T 1pby_B          165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYF  244 (337)
T ss_dssp             EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred             cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCcee
Confidence            111111                                                      00          00112456


Q ss_pred             eEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee--CCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      ++++++.+.+||++   .+.|..+++........+..  -..|.++++.  +.+||++ ...+.|...+..+++.+..+.
T Consensus       245 ~~~~s~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~-~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          245 STAVNPAKTRAFGA---YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLG-GALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEECTTSSEEEEE---ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEE-SBSSEEEEEETTTCCEEEEEE
T ss_pred             eEEECCCCCEEEEe---CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEE-cCCCcEEEEECcCCcEEEEEE
Confidence            78888888888888   37888888876544333332  2367788874  4568887 446788888877777666553

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.29  E-value=1.6e-09  Score=117.27  Aligned_cols=238  Identities=9%  Similarity=-0.014  Sum_probs=163.9

Q ss_pred             CCCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEc--CCCcceEEEcCCCCCc
Q psy952           15 IKPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV--GSTEKERVIRHDSHGL   90 (573)
Q Consensus        15 ~~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~--~g~~~~~i~~~~~~~p   90 (573)
                      +...++++.  .+.|..+++...+....+.....+.+++|++.+++||.++.. +.|..+++  ........+..+ ..|
T Consensus       147 p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~V~v~D~~~~t~~~~~~i~~g-~~p  224 (543)
T 1nir_A          147 LPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-ARIDMIDLWAKEPTKVAEIKIG-IEA  224 (543)
T ss_dssp             GGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT-SEEEEEETTSSSCEEEEEEECC-SEE
T ss_pred             CCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC-CeEEEEECcCCCCcEEEEEecC-CCc
Confidence            455677776  367999998765543333322338899999999999999987 89999999  332222223333 579


Q ss_pred             ceeEEee----cCCcEEEEeCCCCeEEEEEcCCCceeEecc--C----------CCCcceEEEeCCCceEEEEecCCcCe
Q psy952           91 EGLAVDW----VGRKLYWLDRHSKQLDVAELDGTNRKTLKT--A----------IQDPRGITLHPGIGYVYFSSWNLQAY  154 (573)
Q Consensus        91 ~glavD~----~~~~LY~td~~~~~I~~~~ldg~~~~~l~~--~----------~~~P~~Iavdp~~g~LYwtd~~~~~~  154 (573)
                      .+|+|++    .++.||+++...+.|.+++.........+.  +          ...+.+|+++|..+.+|++.. ...+
T Consensus       225 ~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~-~~g~  303 (543)
T 1nir_A          225 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-ETGK  303 (543)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-TTTE
T ss_pred             ceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC-CCCe
Confidence            9999998    899999999878899999876443322221  1          125679999998888888874 4678


Q ss_pred             EEEEeccCCC-cE-EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCcccee-EEEee-e--
Q psy952          155 IGKIGMDGSN-FT-RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHV-FALTL-F--  228 (573)
Q Consensus       155 I~r~~ldG~~-~~-~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p-~~ia~-~--  228 (573)
                      |...++.... .. ..+   ..-.+|.++++++++++||++....++|..++.........+.....+|| .++.+ .  
T Consensus       304 i~vvd~~~~~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~  380 (543)
T 1nir_A          304 VLLVNYKDIDNLTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK  380 (543)
T ss_dssp             EEEEECTTSSSCEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETT
T ss_pred             EEEEEecCCCcceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCC
Confidence            8888876432 22 122   23457999999999999999998889999999875544333332224565 24443 2  


Q ss_pred             CCeEEEecC-CCCceEEEeccC-------CcceEEEcc
Q psy952          229 EDHIYWTDW-NTKSINRADKFN-------GRDYRVLRN  258 (573)
Q Consensus       229 ~~~lywtd~-~~~~I~~~~~~~-------g~~~~~l~~  258 (573)
                      .+.+|+|.. ..++|..++..+       ++.+++|..
T Consensus       381 ~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~  418 (543)
T 1nir_A          381 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG  418 (543)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred             CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEc
Confidence            367888864 567888887665       455555543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.28  E-value=1.3e-09  Score=105.08  Aligned_cols=180  Identities=12%  Similarity=0.211  Sum_probs=126.0

Q ss_pred             cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-e--EEEcCC------CCCccee
Q psy952           24 KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-E--RVIRHD------SHGLEGL   93 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~--~i~~~~------~~~p~gl   93 (573)
                      ...|++++++|.... +.+.+...+.||+++ .++.+|+++...++|+.+.++.... .  ..+...      ....+||
T Consensus        48 ~~~I~~ld~~g~v~~~i~l~g~~D~EGIa~~-~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGL  126 (255)
T 3qqz_A           48 PAAIVEMTTNGDLIRTIPLDFVKDLETIEYI-GDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGL  126 (255)
T ss_dssp             TEEEEEEETTCCEEEEEECSSCSSEEEEEEC-STTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEE
T ss_pred             CCeEEEEeCCCCEEEEEecCCCCChHHeEEe-CCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceE
Confidence            467999999976443 335666789999998 5678888988888999888765332 1  111111      1234999


Q ss_pred             EEeecCCcEEEEeCCCC-eEEEEE--cCCCceeEec-------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           94 AVDWVGRKLYWLDRHSK-QLDVAE--LDGTNRKTLK-------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        94 avD~~~~~LY~td~~~~-~I~~~~--ldg~~~~~l~-------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      |+|+.+++||++..... .|+.++  +.+...+++.       ..+..+.+|++||.++.||+... ....|..++++|.
T Consensus       127 A~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~-~s~~L~~~d~~g~  205 (255)
T 3qqz_A          127 AYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSH-ESRALQEVTLVGE  205 (255)
T ss_dssp             EEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEET-TTTEEEEECTTCC
T ss_pred             EEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEEC-CCCeEEEEcCCCC
Confidence            99999999999886544 677776  2222223321       14567999999999999999974 4678999999998


Q ss_pred             CcEEEEecC-------CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC
Q psy952          164 NFTRILTHE-------DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGK  208 (573)
Q Consensus       164 ~~~~l~~~~-------~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~  208 (573)
                      .+..+.- .       ..+..|.|||+|+ +++||++.. .+.++++..+++
T Consensus       206 ~~~~~~L-~~g~~~l~~~~~qpEGia~d~-~G~lyIvsE-~n~~y~f~~~~~  254 (255)
T 3qqz_A          206 VIGEMSL-TKGSRGLSHNIKQAEGVAMDA-SGNIYIVSE-PNRFYRFTPQSS  254 (255)
T ss_dssp             EEEEEEC-STTGGGCSSCCCSEEEEEECT-TCCEEEEET-TTEEEEEEC---
T ss_pred             EEEEEEc-CCccCCcccccCCCCeeEECC-CCCEEEEcC-CceEEEEEecCC
Confidence            5544431 2       2357899999996 568999954 468998877643

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.27  E-value=9.4e-10  Score=106.77  Aligned_cols=182  Identities=14%  Similarity=0.115  Sum_probs=131.0

Q ss_pred             CEEEEEec----ccEEEEEcCCCcee--ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           17 PWLIFSNK----YYVRNMSLDATQYS--LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        17 ~~l~~s~~----~~I~~i~l~g~~~~--~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      ..|++++.    +.|+++++...+..  +.+.....+.|++++  +++||+++...+.|++++++......-+..+  .|
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--~~  107 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--MK  107 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC--SS
T ss_pred             CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC--CC
Confidence            57888763    68999999865543  223333456778887  6899999999999999998754332223333  45


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee-Eecc-----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK-TLKT-----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~-~l~~-----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      .|+.+.+.+++||+++ +.++|.+++....... .+.-     .+..|++|++.  .|.||.+.|. ...|.++++....
T Consensus       108 ~g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~-~~~V~vID~~tg~  183 (266)
T 2iwa_A          108 DGWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQ-TDCIARISAKDGT  183 (266)
T ss_dssp             SCCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-SSEEEEEETTTCC
T ss_pred             CeEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCC-CCeEEEEECCCCc
Confidence            6666666689999999 6789999998764432 3321     23458888887  5799999875 5789999996544


Q ss_pred             cEEEEecCC------------CCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952          165 FTRILTHED------------DIAWPNALTLDYFTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       165 ~~~l~~~~~------------~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      ....+. ..            ....|+||++++.+++||++....++|+.+++..
T Consensus       184 V~~~I~-~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          184 LLGWIL-LPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             EEEEEE-CHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             EEEEEE-CCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            333331 11            2257899999999999999999999999888654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.24  E-value=6.3e-09  Score=106.56  Aligned_cols=246  Identities=9%  Similarity=0.046  Sum_probs=152.6

Q ss_pred             CEEEEEec-------ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEEC---------CCCeEEEEEcCCCcc-
Q psy952           17 PWLIFSNK-------YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV---------AAKTIYRSRVGSTEK-   79 (573)
Q Consensus        17 ~~l~~s~~-------~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~-   79 (573)
                      .++++++.       +.|+++++...+....+.....| +|++++..++||+++.         ..+.|..+++..... 
T Consensus        16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~   94 (361)
T 2oiz_A           16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFE   94 (361)
T ss_dssp             GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEE
T ss_pred             CEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEE
Confidence            46777653       47899998755544334444567 9999999999999984         235688998865332 


Q ss_pred             eEEEcC-----CCCCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCCceeEe-ccC-C-----CCc----ceEEEeCCCc
Q psy952           80 ERVIRH-----DSHGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGTNRKTL-KTA-I-----QDP----RGITLHPGIG  142 (573)
Q Consensus        80 ~~i~~~-----~~~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~~~~~l-~~~-~-----~~P----~~Iavdp~~g  142 (573)
                      ..+...     ....|.+|++++.++.||+++.. .+.|.++++........ +.. .     ..|    .-+++.+...
T Consensus        95 ~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~  174 (361)
T 2oiz_A           95 KEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGG  174 (361)
T ss_dssp             EEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSS
T ss_pred             EEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCc
Confidence            223211     12579999999999999999975 67899999875443222 211 0     122    3355666554


Q ss_pred             eEEEEecCCc------------------------------------CeEEEEeccCCCcEEEEecC--C-----CCCCCc
Q psy952          143 YVYFSSWNLQ------------------------------------AYIGKIGMDGSNFTRILTHE--D-----DIAWPN  179 (573)
Q Consensus       143 ~LYwtd~~~~------------------------------------~~I~r~~ldG~~~~~l~~~~--~-----~l~~P~  179 (573)
                      .+||+.....                                    +.|+.+++.+....++....  .     ....|.
T Consensus       175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  254 (361)
T 2oiz_A          175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG  254 (361)
T ss_dssp             EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred             EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence            5555431111                                    12333333222211111000  0     001244


Q ss_pred             e---EEEeccCCeEEEEeC----------CCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEE
Q psy952          180 A---LTLDYFTERLYWADA----------HLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINR  244 (573)
Q Consensus       180 g---laiD~~~~~LYw~D~----------~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~  244 (573)
                      |   +++++.+++||++..          ..+.|..+++....+...+...  . |.+|++  ++.+||.+.+  +.|..
T Consensus       255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~--~-p~~ia~spdg~~l~v~n~--~~v~v  329 (361)
T 2oiz_A          255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR--D-ALSMTIDQQRNLMLTLDG--GNVNV  329 (361)
T ss_dssp             CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT--T-CCEEEEETTTTEEEEECS--SCEEE
T ss_pred             CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC--C-eeEEEECCCCCEEEEeCC--CeEEE
Confidence            4   899999999999854          1357999998765443333332  2 889988  4678999986  88999


Q ss_pred             EeccCC--cceEEEcccCCCceeeee
Q psy952          245 ADKFNG--RDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       245 ~~~~~g--~~~~~l~~~~~~p~~i~v  268 (573)
                      ++..++  +.+..+...-..|.+|++
T Consensus       330 ~D~~t~~l~~~~~i~~~G~~P~~~~~  355 (361)
T 2oiz_A          330 YDISQPEPKLLRTIEGAAEASLQVQF  355 (361)
T ss_dssp             EECSSSSCEEEEEETTSCSSEEEEEE
T ss_pred             EECCCCcceeeEEeccCCCCcEEEEe
Confidence            998888  766666444557887765

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.23  E-value=4.4e-10  Score=118.39  Aligned_cols=206  Identities=12%  Similarity=0.093  Sum_probs=131.3

Q ss_pred             ceeecccCCcceEEEEEEcCCC-EEEEEECCCCeEEEEEcCCCc-ceEE------EcCC-----CCCcceeEEeec---C
Q psy952           36 QYSLVHQDLLNVVAMDFHYKEN-RFYFADVAAKTIYRSRVGSTE-KERV------IRHD-----SHGLEGLAVDWV---G   99 (573)
Q Consensus        36 ~~~~~~~~~~~~~~v~~d~~~~-~ly~~d~~~~~I~~~~~~g~~-~~~i------~~~~-----~~~p~glavD~~---~   99 (573)
                      .+++++.++..|.+|++.+... +||+++.. ++|++++.+|.. .+.+      +..+     ...+.|||+++.   +
T Consensus         5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er~-G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n   83 (463)
T 2wg3_C            5 CIQEVVSGLRQPVGALHSGDGSQRLFILEKE-GYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN   83 (463)
T ss_dssp             EEEEEEEEESSEEEEECCSSSSCCEEEEETT-TEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred             EEEEeccCCCCceEEEECCCCCeEEEEEeCC-ceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence            4566777899999999998764 79999874 789998876642 1111      1111     346788999873   6


Q ss_pred             CcEEEEeCC--C----------CeEEEEEcCCC--------ceeEecc-----CCCCcceEEEeCCCceEEEEecCC---
Q psy952          100 RKLYWLDRH--S----------KQLDVAELDGT--------NRKTLKT-----AIQDPRGITLHPGIGYVYFSSWNL---  151 (573)
Q Consensus       100 ~~LY~td~~--~----------~~I~~~~ldg~--------~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~~---  151 (573)
                      +.||++.+.  .          .+|.++.+...        ..++|++     .......|+++| .|+||++--..   
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~  162 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMIT  162 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCC
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCC
Confidence            789987532  1          37888887531        2344442     223477899999 68999994211   


Q ss_pred             -------------cCeEEEEeccCCC-------------------cEEEEecCCCCCCCceEEEeccCC------eEEEE
Q psy952          152 -------------QAYIGKIGMDGSN-------------------FTRILTHEDDIAWPNALTLDYFTE------RLYWA  193 (573)
Q Consensus       152 -------------~~~I~r~~ldG~~-------------------~~~l~~~~~~l~~P~glaiD~~~~------~LYw~  193 (573)
                                   .++|.|++.||..                   +..|.  ..++..|.||++|+..+      +||.+
T Consensus       163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~--a~G~RNp~gla~dp~tg~~~G~l~~~~~  240 (463)
T 2wg3_C          163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVF--AHGLHDPGRCAVDRHPTDININLTILCS  240 (463)
T ss_dssp             HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEE--EECCSSCCBEEEESSCSSTTCSEEEEEE
T ss_pred             CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEE--EECCCCcceEEECCCCCCcccceEEEec
Confidence                         3589999999941                   12344  47899999999998744      77888


Q ss_pred             eC-CC----CeEEEEeCCCCc----EEEEEeCC-ccceeEEEeeeCC--------eEEEecCCCCceEEEec
Q psy952          194 DA-HL----DYIASVDLDGKH----KHIVISGQ-KVPHVFALTLFED--------HIYWTDWNTKSINRADK  247 (573)
Q Consensus       194 D~-~~----~~I~~~~~dG~~----~~~l~~~~-~~~~p~~ia~~~~--------~lywtd~~~~~I~~~~~  247 (573)
                      |. +.    ..|..+.. |.+    .-++.-.. .-..|.|++++.+        .+|++++. ++|.++..
T Consensus       241 D~~G~~~~~~ei~~i~~-G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~  310 (463)
T 2wg3_C          241 DSNGKNRSSARILQIIK-GKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQ  310 (463)
T ss_dssp             CC------CEEEEEEC-----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC
T ss_pred             ccCCCCCCCCeEeeecc-CCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEe
Confidence            86 22    23444422 221    11111111 0136889998644        48899987 77888864

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.22  E-value=8.1e-12  Score=85.14  Aligned_cols=40  Identities=50%  Similarity=1.088  Sum_probs=35.1

Q ss_pred             CCCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCC
Q psy952          522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC  562 (573)
Q Consensus       522 ~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c  562 (573)
                      +..|.+++|+|.++ +|||.+|+|||..||.|||||....|
T Consensus         3 ~~~C~~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~c~C   42 (45)
T 1d2l_A            3 PPQCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPALC   42 (45)
T ss_dssp             CCBTTBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTTTC
T ss_pred             CCcCCCCceEcCCC-CeEehhhccCCCCCCCCCCCCCCCcC
Confidence            35688899999999 99999999999999999999994333

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.22  E-value=1.3e-09  Score=111.42  Aligned_cols=252  Identities=9%  Similarity=-0.037  Sum_probs=160.7

Q ss_pred             CCCceeeCCC-CCCEEEEEec--c----cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEEC---------CCCe
Q psy952            5 DESTCKRRDS-IKPWLIFSNK--Y----YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV---------AAKT   68 (573)
Q Consensus         5 dg~~C~~~~~-~~~~l~~s~~--~----~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~---------~~~~   68 (573)
                      ++.+|..... ....+++++.  +    .|..|+++..+....+.....| ++++++..++||+++.         ..+.
T Consensus        19 ~~~~~~~~~~~~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~   97 (368)
T 1mda_H           19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             CccccccCCCCCCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCE
Confidence            5667754332 2356777764  2    7888998876554333333457 9999999999999984         3568


Q ss_pred             EEEEEcCCCcc-eEEEcC-C-----CCCcceeEEeecCCcEEEEeCC-CCeEEE--EEcCCCceeEecc-C---------
Q psy952           69 IYRSRVGSTEK-ERVIRH-D-----SHGLEGLAVDWVGRKLYWLDRH-SKQLDV--AELDGTNRKTLKT-A---------  128 (573)
Q Consensus        69 I~~~~~~g~~~-~~i~~~-~-----~~~p~glavD~~~~~LY~td~~-~~~I~~--~~ldg~~~~~l~~-~---------  128 (573)
                      |..+++..... ..|... +     ...|.+|++++.+++||+++.. .+.|.+  +++..  .+++-. +         
T Consensus        98 VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i~v~~~~~~~p~g~  175 (368)
T 1mda_H           98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLTKSASCFHIHPGAA  175 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEEECSSCCCCEEEET
T ss_pred             EEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEEECCCceEEccCCC
Confidence            99999876543 333221 0     2579999999999999999865 466777  55532  111100 0         


Q ss_pred             -------------------------------------CCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec
Q psy952          129 -------------------------------------IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH  171 (573)
Q Consensus       129 -------------------------------------~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~  171 (573)
                                                           ...|.  + .+..+.+||+..   +.|..+++.+...+++...
T Consensus       176 ~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~---~~V~viD~~~~~~~v~~~~  249 (368)
T 1mda_H          176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA---SSILQGDIPAAGATMKAAI  249 (368)
T ss_dssp             TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS---SCCEEEECCSSCCEEECCC
T ss_pred             eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC---CEEEEEECCCCcceEEEEE
Confidence                                                 01132  2 444566666663   5677777765443332200


Q ss_pred             C-------CCCCCCce---EEEeccCCeEEEEeC---C-----CCeEEEEeCCCCcE-EEEEeCCccceeEEEeee--CC
Q psy952          172 E-------DDIAWPNA---LTLDYFTERLYWADA---H-----LDYIASVDLDGKHK-HIVISGQKVPHVFALTLF--ED  230 (573)
Q Consensus       172 ~-------~~l~~P~g---laiD~~~~~LYw~D~---~-----~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~--~~  230 (573)
                      .       .....|.|   +++++++++||++..   +     .+.+..+|+....+ ..|..+   ..|.+|++.  +.
T Consensus       250 ~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~  326 (368)
T 1mda_H          250 DGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGA  326 (368)
T ss_dssp             CSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSS
T ss_pred             EeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCC
Confidence            0       01123555   899999999999865   3     24556888765433 222222   269999984  44


Q ss_pred             eEEEecC-CCCceEEEeccCCcceEEEcccCCCceeeeee
Q psy952          231 HIYWTDW-NTKSINRADKFNGRDYRVLRNTTHRPYDIHVY  269 (573)
Q Consensus       231 ~lywtd~-~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~  269 (573)
                      ++|++.. ..+.|..++..+++.+..+..+ ..|.+|.+-
T Consensus       327 ~l~va~~~~~~~VsVID~~t~kvv~~I~vg-~~P~~i~~~  365 (368)
T 1mda_H          327 SDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLSVQ  365 (368)
T ss_dssp             CEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEECC
T ss_pred             EEEEEccCCCCeEEEEECCCCcEEEEEECC-CCCCEEEee
Confidence            6999988 7999999999888877777543 478887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.22  E-value=6.3e-09  Score=105.40  Aligned_cols=163  Identities=10%  Similarity=0.064  Sum_probs=112.5

Q ss_pred             cccEEEEEcCCC--c-eeecccC------CcceEEEEEEcC---CCEEEEEECC--CCe--EEEEEcCCCcceEE---Ec
Q psy952           24 KYYVRNMSLDAT--Q-YSLVHQD------LLNVVAMDFHYK---ENRFYFADVA--AKT--IYRSRVGSTEKERV---IR   84 (573)
Q Consensus        24 ~~~I~~i~l~g~--~-~~~~~~~------~~~~~~v~~d~~---~~~ly~~d~~--~~~--I~~~~~~g~~~~~i---~~   84 (573)
                      ...|++++++..  . .++...+      ..+|.||++...   +.+||+++..  ...  |++++.++.....+   -.
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g  161 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  161 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc
Confidence            567999998732  2 2222333      237999999762   3479999876  334  56666655432222   12


Q ss_pred             CCCCCcceeEEeecCCcEEEEeC-----------------CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEE
Q psy952           85 HDSHGLEGLAVDWVGRKLYWLDR-----------------HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFS  147 (573)
Q Consensus        85 ~~~~~p~glavD~~~~~LY~td~-----------------~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwt  147 (573)
                      ..+..|+++++|. .+.+|+++.                 ..++|++++..  ..+++..++..|+|||++|...+||++
T Consensus       162 ~~~~~pND~~v~~-~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYva  238 (355)
T 3sre_A          162 KLLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIA  238 (355)
T ss_dssp             TTCSSEEEEEEEE-TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             CCCCCCceEEEeC-CCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEE
Confidence            3478999999996 567777764                 23578887763  456677889999999999998999999


Q ss_pred             ecCCcCeEEEEeccCCC----cEEEEecCCCCCCCceEEEeccCCeEEEEe
Q psy952          148 SWNLQAYIGKIGMDGSN----FTRILTHEDDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       148 d~~~~~~I~r~~ldG~~----~~~l~~~~~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      +.. ..+|++.++++..    ++++.  .  -..|.||++|.++++||++.
T Consensus       239 dt~-~~~I~~~~~~~~g~l~~~~~~~--~--~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          239 ELL-AHKIHVYEKHANWTLTPLRVLS--F--DTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EGG-GTEEEEEEECTTSCEEEEEEEE--C--SSEEEEEEECTTTCCEEEEE
T ss_pred             eCC-CCeEEEEEECCCCcEecCEEEe--C--CCCCceEEEeCCCCcEEEEe
Confidence            964 6789999886432    22221  2  35799999996468999965

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.21  E-value=1.4e-09  Score=114.83  Aligned_cols=226  Identities=12%  Similarity=0.131  Sum_probs=148.6

Q ss_pred             CCCEEEEEecc--cEEEEEcCCCceeec--cc-------CCcceEEEEEEcC---CCEEEEEECC------------CCe
Q psy952           15 IKPWLIFSNKY--YVRNMSLDATQYSLV--HQ-------DLLNVVAMDFHYK---ENRFYFADVA------------AKT   68 (573)
Q Consensus        15 ~~~~l~~s~~~--~I~~i~l~g~~~~~~--~~-------~~~~~~~v~~d~~---~~~ly~~d~~------------~~~   68 (573)
                      +..-|+++.+.  .|+++...+...+.+  +.       +...+.+|++++.   ++.||++...            ..+
T Consensus        36 pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~~~~~  115 (454)
T 1cru_A           36 PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELPNQTI  115 (454)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSCEEEE
T ss_pred             CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccccccE
Confidence            44557777754  599888753333221  11       3455789999987   8999999863            358


Q ss_pred             EEEEEcCCC-----cceEEEc----CCCCCcceeEEeecCCcEEEEeCC-------------------------------
Q psy952           69 IYRSRVGST-----EKERVIR----HDSHGLEGLAVDWVGRKLYWLDRH-------------------------------  108 (573)
Q Consensus        69 I~~~~~~g~-----~~~~i~~----~~~~~p~glavD~~~~~LY~td~~-------------------------------  108 (573)
                      |+|+.++..     ..++|+.    ...+.+.+|++++ .++||++-..                               
T Consensus       116 v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p~~~~~~aq~~~~  194 (454)
T 1cru_A          116 IRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHT  194 (454)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTT
T ss_pred             EEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccccccccccccccccccccCCCC
Confidence            999987542     2334442    2346789999997 5689998421                               


Q ss_pred             -CCeEEEEEcCCC-----------ceeEeccCCCCcceEEEeCCCceEEEEecCCcC--eEEEEec---------cC---
Q psy952          109 -SKQLDVAELDGT-----------NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQA--YIGKIGM---------DG---  162 (573)
Q Consensus       109 -~~~I~~~~ldg~-----------~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~--~I~r~~l---------dG---  162 (573)
                       .++|.+++.+|+           ..+++..++.+|.+|++|| .|.||+++.+...  .|.++..         .|   
T Consensus       195 ~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp-~G~L~~~d~g~~~~dein~i~~G~nYGWP~~~G~~~  273 (454)
T 1cru_A          195 YMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGPNSDDEINLIVKGGNYGWPNVAGYKD  273 (454)
T ss_dssp             CSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECSSSCEEEEECCTTCBCCTTTCSSSSS
T ss_pred             CCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECC-CCCEEEEecCCCCCeEEEEecCCCCCCCCceecCcc
Confidence             478999999998           4455667899999999999 7999999975321  2322211         01   


Q ss_pred             ------------------------CCc--------------E----EEEec--------------------CCCCCCCce
Q psy952          163 ------------------------SNF--------------T----RILTH--------------------EDDIAWPNA  180 (573)
Q Consensus       163 ------------------------~~~--------------~----~l~~~--------------------~~~l~~P~g  180 (573)
                                              ...              .    .++..                    ......|.|
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~p~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ap~G  353 (454)
T 1cru_A          274 DSGYAYANYSAAANKSIKDLAQNGVKVAAGVPVTKESEWTGKNFVPPLKTLYTVQDTYNYNDPTCGEMTYICWPTVAPSS  353 (454)
T ss_dssp             CSSCCEECGGGSSCTTCCCCCSTTSSCCTTCCEECGGGCCCSSBCCCSEEECCCCTTCCSCCGGGTTCGGGGSSCCCBCC
T ss_pred             cCccccccccccccccccccccCCcccCccccccccccccCCCcCCCceecccccccccccccccccccccccCccCcce
Confidence                                    000              0    00000                    001234778


Q ss_pred             EEEecc--------CCeEEEEeCCCCeEEEEeCCC--CcE----EEEEeCCccceeEEEeee-CCe-EEEecCCCCceEE
Q psy952          181 LTLDYF--------TERLYWADAHLDYIASVDLDG--KHK----HIVISGQKVPHVFALTLF-EDH-IYWTDWNTKSINR  244 (573)
Q Consensus       181 laiD~~--------~~~LYw~D~~~~~I~~~~~dG--~~~----~~l~~~~~~~~p~~ia~~-~~~-lywtd~~~~~I~~  244 (573)
                      |++...        .+.||+++...++|.++.+++  ...    ..++. . ..+|..|++. ++. ||+++...+.|++
T Consensus       354 ~~fy~g~~~~~~~~~g~lfv~~~~~~~i~~v~l~~~g~~~~~~~~~~~~-~-~~R~~dv~~gpDG~~Lyv~~d~~G~i~~  431 (454)
T 1cru_A          354 AYVYKGGKKAITGWENTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFK-S-NNRYRDVIASPDGNVLYVLTDTAGNVQK  431 (454)
T ss_dssp             CEECCCCTTCCTTCTTEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESC-C-SSCEEEEEECTTSSCEEEEECSSCCEEC
T ss_pred             eEEeCCCCccCcccCCcEEEeecCCCEEEEEEECCCCCeeeeeeeeecc-c-CCCceeEEECCCCCEEEEEECCCCCCcc
Confidence            988633        378999999999999999874  222    12222 2 4689999985 455 9999988888765

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.20  E-value=9.9e-12  Score=134.62  Aligned_cols=103  Identities=25%  Similarity=0.488  Sum_probs=81.4

Q ss_pred             ceecCCCcccCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCCCccccCCccccCCCCCCCCCCCCCCCCCCCC
Q psy952          415 EFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLE  494 (573)
Q Consensus       415 ~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d~sDe~~~~C~~c  494 (573)
                      .+.|..+.+++..+.||...+|.+.+++    |    |...+|+|.   ++.||+..++|||..||.|+|||  ..    
T Consensus       175 l~~C~~~~~~~~~h~~DagV~C~~~~~~----c----~~~~~~~C~---~~~ci~~~~~Cdg~~dC~d~sDE--~~----  237 (565)
T 2xrc_A          175 LAECTFTKRRTMGYQDFADVVCYTQKAD----S----PMDDFFQCV---NGKYISQMKACDGINDCGDQSDE--LC----  237 (565)
T ss_dssp             GGGSEEECCCCCSSCCCCEEEBCCC-----------------CBCT---TSCBCCTTSTTSSSCCSSSSSSS--SS----
T ss_pred             hhhcccCcccccccccCCceeccccccC----C----CCcCeeECC---CCCccCHHHcCCCcccCCCCccc--cc----
Confidence            5778877788888999999999877655    2    344569997   68999999999999999999998  33    


Q ss_pred             CCCCccCCCCCCCCCCCCcccccCCCCCCCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCCC
Q psy952          495 SLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ  564 (573)
Q Consensus       495 ~~~~~Cd~~~dC~dg~~~de~~~~C~~~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~  564 (573)
                                              |.   .|.+.+|+|.++ .||+..++|||..||.|||||.  +|..
T Consensus       238 ------------------------C~---~c~~~~~~C~~~-~C~~~~~~cdG~~dC~~gsDE~--~C~~  277 (565)
T 2xrc_A          238 ------------------------CK---ACQGKGFHCKSG-VCIPSQYQCNGEVDCITGEDEV--GCAG  277 (565)
T ss_dssp             ------------------------BS---SCSSSCEEETTT-EEECGGGTTSSSCCSSSCTTSS--SCC-
T ss_pred             ------------------------cc---ccCCCceecCCC-cccCccccCCCcccCCCCcccc--CcCC
Confidence                                    41   266778999999 8999999999999999999998  8864

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.18  E-value=7e-09  Score=105.65  Aligned_cols=181  Identities=13%  Similarity=0.103  Sum_probs=124.1

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-------c------eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeE
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-------K------ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQL  112 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~------~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I  112 (573)
                      .+.+++|++..+.||+++...+.|+.++++...       .      ..+.......|.++++++.++.||+++...+.|
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  235 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTV  235 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeE
Confidence            357899999888999999988888888776432       1      122223346799999999888999999888899


Q ss_pred             EEEEcCCCceeEec------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc--CCCcEEEEecCCCCCCCceEEEe
Q psy952          113 DVAELDGTNRKTLK------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD--GSNFTRILTHEDDIAWPNALTLD  184 (573)
Q Consensus       113 ~~~~ldg~~~~~l~------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld--G~~~~~l~~~~~~l~~P~glaiD  184 (573)
                      .+++++....+.+.      .....|.+|+++|...+||+++......|....++  ....+.+..... -..|.+|+++
T Consensus       236 ~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s  314 (361)
T 3scy_A          236 IAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT  314 (361)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred             EEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence            99998754332222      23345889999999889999985423456665554  222222221022 4579999999


Q ss_pred             ccCCeEEEEeCCCCeEEEEeCC--CCcEEEEEeCCccceeEEEee
Q psy952          185 YFTERLYWADAHLDYIASVDLD--GKHKHIVISGQKVPHVFALTL  227 (573)
Q Consensus       185 ~~~~~LYw~D~~~~~I~~~~~d--G~~~~~l~~~~~~~~p~~ia~  227 (573)
                      +++++||++....+.|..+.+|  ....+.+......+.|..|++
T Consensus       315 pdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~  359 (361)
T 3scy_A          315 PNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKF  359 (361)
T ss_dssp             TTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEE
Confidence            9999999999888877775544  333333322212567777765

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.18  E-value=1.6e-11  Score=82.77  Aligned_cols=40  Identities=38%  Similarity=0.910  Sum_probs=35.0

Q ss_pred             CCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCCC
Q psy952          523 ITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ  564 (573)
Q Consensus       523 ~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~  564 (573)
                      ..|.+++|+|.+..+|||..|+|||..||.|||||.  +|..
T Consensus         2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~--~C~~   41 (42)
T 1cr8_A            2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK--SCEG   41 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTT--TCCC
T ss_pred             CCCCCCceEeCCCCeEcChhhcCCCCcCCCCCCccc--CCCC
Confidence            457889999986339999999999999999999998  7853

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.18  E-value=8.7e-12  Score=81.58  Aligned_cols=36  Identities=39%  Similarity=1.055  Sum_probs=33.6

Q ss_pred             cCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       525 C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      |.+++|+|.++ +||+.+|+|||..||.|||||.  +|+
T Consensus         2 C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~--~C~   37 (37)
T 1ajj_A            2 CSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEE--NCA   37 (37)
T ss_dssp             CCTTCEECTTS-CEECGGGTTSSSCCSTTCGGGT--TCC
T ss_pred             CCCCceEcCCC-CeechhhccCCCCCCCCCcccc--CCC
Confidence            67889999999 9999999999999999999998  774

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.18  E-value=3.6e-10  Score=119.24  Aligned_cols=159  Identities=14%  Similarity=0.177  Sum_probs=117.4

Q ss_pred             CCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE--cC------CCCCcceeEEeec---CCcE
Q psy952           34 ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI--RH------DSHGLEGLAVDWV---GRKL  102 (573)
Q Consensus        34 g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~--~~------~~~~p~glavD~~---~~~L  102 (573)
                      +-..++++.++..|.+|++++ +++||+++...++|++++..++..+++.  ..      +...+.|||+++.   ++.|
T Consensus        16 gf~~~~~a~~l~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l   94 (454)
T 1cru_A           16 NFDKKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (454)
T ss_dssp             TSCEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             CeEEEEEECCCCCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence            445667778899999999997 5789999988889999987533333332  11      2345669999976   8999


Q ss_pred             EEEeCC------------CCeEEEEEcCCC-----ceeEecc-----CCCCcceEEEeCCCceEEEEecCC---------
Q psy952          103 YWLDRH------------SKQLDVAELDGT-----NRKTLKT-----AIQDPRGITLHPGIGYVYFSSWNL---------  151 (573)
Q Consensus       103 Y~td~~------------~~~I~~~~ldg~-----~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~~---------  151 (573)
                      |++.+.            ..+|.++++++.     ..++|+.     ....+.+|+++| .|+||++....         
T Consensus        95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~p-DG~Lyv~~Gd~~~~~~~~~~  173 (454)
T 1cru_A           95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLF  173 (454)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTT
T ss_pred             EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECC-CCeEEEEECCCCCCCccccc
Confidence            999853            357988887542     2344442     234599999999 68999995321         


Q ss_pred             ----------------------cCeEEEEeccCC-----------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952          152 ----------------------QAYIGKIGMDGS-----------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD  198 (573)
Q Consensus       152 ----------------------~~~I~r~~ldG~-----------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~  198 (573)
                                            .++|.|++.||+           ..+ ++  ...+..|.||++|+ .++||++|.+.+
T Consensus       174 ~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~e-i~--a~G~RNp~gla~dp-~G~L~~~d~g~~  249 (454)
T 1cru_A          174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSH-IY--TLGHRNPQGLAFTP-NGKLLQSEQGPN  249 (454)
T ss_dssp             SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECS-EE--EBCCSEEEEEEECT-TSCEEEEEECSS
T ss_pred             cccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcce-EE--EECCCCcceEEECC-CCCEEEEecCCC
Confidence                                  368999999998           233 34  47889999999998 699999997654

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.17  E-value=5.2e-12  Score=88.13  Aligned_cols=39  Identities=44%  Similarity=1.049  Sum_probs=35.9

Q ss_pred             CCCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       522 ~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      +..|.+++|+|.+| +|||.+|+|||..||+|||||.  +|.
T Consensus         4 p~~C~~~~F~C~nG-~CIp~~~~CDG~~DC~DgSDE~--~~~   42 (52)
T 2m0p_A            4 PASCLDTQYTCDNH-QCISKNWVCDTDNDCGDGSDEK--NCN   42 (52)
T ss_dssp             CCSSCSSEEECTTC-CEEETTSTTSSSCSSSSCHHHH--SCC
T ss_pred             CCCCCCCceECCCC-CEEecCccCCCCCCCCCCCccc--cch
Confidence            46788999999999 9999999999999999999998  664

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.16  E-value=1.8e-11  Score=80.97  Aligned_cols=37  Identities=41%  Similarity=1.064  Sum_probs=33.6

Q ss_pred             cCCCceeeCC--CCceecCCcCcCCCCCCCCCCCCCCCCCCC
Q psy952          525 CPPHHLKCAN--TNICVEPYWLCDGDNDCGDMSDEDPLHCQQ  564 (573)
Q Consensus       525 C~~~~f~C~~--~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~  564 (573)
                      |.+.+|+|.+  + +|||.+|+|||..||.|||||.  +|++
T Consensus         1 C~~~~f~C~~~~g-~Cip~~~~CDg~~DC~dgsDE~--~C~~   39 (39)
T 3dpr_E            1 CRIHEISCGAHST-QCIPVSWRCDGENDCDSGEDEE--NCGN   39 (39)
T ss_dssp             CCTTTCCCSSSSS-CCCCTTSSSSSSCCSTTTTTST--TCCC
T ss_pred             CCCCceecCCCCC-CEeCccccCCCcccCcCCcccc--cCCC
Confidence            5688999998  6 9999999999999999999998  8863

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.16  E-value=4.5e-09  Score=104.13  Aligned_cols=218  Identities=12%  Similarity=0.020  Sum_probs=143.5

Q ss_pred             CCEEEEEe--cccEEEEEcCCCce-eecccCC-------cceEEEEE---EcCCCEEEE-EEC------------CCCeE
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQY-SLVHQDL-------LNVVAMDF---HYKENRFYF-ADV------------AAKTI   69 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~-~~~~~~~-------~~~~~v~~---d~~~~~ly~-~d~------------~~~~I   69 (573)
                      ...+++++  ...|.++++++... .+.+..+       ..+.||.+   |+. ++||+ ++.            ....|
T Consensus        24 ~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~-grL~vv~~~~~af~~~g~~~~g~~~v  102 (334)
T 2p9w_A           24 RQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNS-KRLFAVMKNAKSFNFADQSSHGASSF  102 (334)
T ss_dssp             TTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSC-CEEEEEEEETTTTCTTSCCSSSCCEE
T ss_pred             CCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCC-CcEEEEEcccccccccccccCCCCEE
Confidence            45677787  57899999985433 3333332       25789999   776 88988 452            24679


Q ss_pred             EEEEcC----CCcceEEEcC------------CCCCcceeEEeecCCcEEEEeCCC-CeEEEEEcCCCceeEec-c----
Q psy952           70 YRSRVG----STEKERVIRH------------DSHGLEGLAVDWVGRKLYWLDRHS-KQLDVAELDGTNRKTLK-T----  127 (573)
Q Consensus        70 ~~~~~~----g~~~~~i~~~------------~~~~p~glavD~~~~~LY~td~~~-~~I~~~~ldg~~~~~l~-~----  127 (573)
                      .+++++    +.....+--.            ....+.+|++|. .+++|++++.. +.|.+++.+|+...++. .    
T Consensus       103 ~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~  181 (334)
T 2p9w_A          103 HSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVSADGKTVSTFAWESGNG  181 (334)
T ss_dssp             EEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCS
T ss_pred             EEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCc
Confidence            999998    3322211100            123588999995 78999999888 99999999998655543 1    


Q ss_pred             -CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE----ecCCCCCCCceE-EEeccCCeEEEEeCCCCeEE
Q psy952          128 -AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL----THEDDIAWPNAL-TLDYFTERLYWADAHLDYIA  201 (573)
Q Consensus       128 -~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~----~~~~~l~~P~gl-aiD~~~~~LYw~D~~~~~I~  201 (573)
                       ....+.|||++|....|++++.  ..+|.++++.-..+..+-    .....+..|.+| ++.+.+..||+++...+.+.
T Consensus       182 ~~~~G~nGIv~~pdg~~Liv~~~--~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~  259 (334)
T 2p9w_A          182 GQRPGYSGITFDPHSNKLIAFGG--PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAIS  259 (334)
T ss_dssp             SSCCSCSEEEEETTTTEEEEESS--SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEE
T ss_pred             ccccCcceEEEeCCCCEEEEEcC--CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCCCCEEE
Confidence             2234789999998888888884  788999999843321121    001256778895 77766666699998777888


Q ss_pred             EEeCCCCcEEEEEeC--CccceeEEEee-------eCCeEEEecCC
Q psy952          202 SVDLDGKHKHIVISG--QKVPHVFALTL-------FEDHIYWTDWN  238 (573)
Q Consensus       202 ~~~~dG~~~~~l~~~--~~~~~p~~ia~-------~~~~lywtd~~  238 (573)
                      ..+.||-....+...  ..+. +.|+++       -+++||+.+..
T Consensus       260 l~S~DgW~sa~~~g~~~~~~~-~~g~tt~t~~~~~~~~~iYvv~~~  304 (334)
T 2p9w_A          260 FRSWDNWKSANIKKTKRSELQ-NSGFTAVADYYQGSEQGLYAVSAF  304 (334)
T ss_dssp             EECSSTTSEEEEEEEECGGGG-SSCEEEEEEEEETTEEEEEEEECC
T ss_pred             EECCCCcceeEEeeeecCccc-cCceeEEEEeccccCCeEEEEeee
Confidence            888888444333321  1021 344433       24678877643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.16  E-value=1.7e-08  Score=105.10  Aligned_cols=223  Identities=13%  Similarity=0.058  Sum_probs=159.0

Q ss_pred             CEEEEEe--cccEEEEEcCCCceee-cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSL-VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL   93 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~-~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl   93 (573)
                      ..++++.  ...|+.+++....... +......+.+++|++.++.||++....+.|+.+++........+.. ...|.++
T Consensus       181 ~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~  259 (433)
T 3bws_A          181 NELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGL  259 (433)
T ss_dssp             TEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEE
Confidence            4455554  3688889987654432 2234456899999999999999998889999999875544333332 3568999


Q ss_pred             EEeecCCcEEEEeC-------CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           94 AVDWVGRKLYWLDR-------HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        94 avD~~~~~LY~td~-------~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      ++++.++.||.+..       ..+.|.+.++........+.....|.+++++|...+||++... ...|...+++.....
T Consensus       260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~-~~~v~v~d~~~~~~~  338 (433)
T 3bws_A          260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMC-CSKIEVYDLKEKKVQ  338 (433)
T ss_dssp             EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETT-TTEEEEEETTTTEEE
T ss_pred             EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecC-CCEEEEEECCCCcEE
Confidence            99988888988874       3568999998765544444333478999999987789999743 678888888755443


Q ss_pred             EEEecCCCCCCCceEEEeccCCeEEEEeCCC--------------CeEEEEeCCCCcEEEEEeCCccceeEEEeee--CC
Q psy952          167 RILTHEDDIAWPNALTLDYFTERLYWADAHL--------------DYIASVDLDGKHKHIVISGQKVPHVFALTLF--ED  230 (573)
Q Consensus       167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~--------------~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--~~  230 (573)
                      ..+   .....|.++++++.+..||++....              +.|...++........+..  ...|.++++.  +.
T Consensus       339 ~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~  413 (433)
T 3bws_A          339 KSI---PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNR  413 (433)
T ss_dssp             EEE---ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSC
T ss_pred             EEe---cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCC
Confidence            333   2345688999999888999998764              4899999865554444443  2468888873  45


Q ss_pred             eEEEecCCCCceEEEe
Q psy952          231 HIYWTDWNTKSINRAD  246 (573)
Q Consensus       231 ~lywtd~~~~~I~~~~  246 (573)
                      .||.+....+.|...+
T Consensus       414 ~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          414 YLVISDFLDHQIRVYR  429 (433)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEEECCCCeEEEEE
Confidence            6788876677776554

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.15  E-value=1.7e-11  Score=83.54  Aligned_cols=39  Identities=41%  Similarity=0.982  Sum_probs=33.6

Q ss_pred             CCCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       522 ~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      ...|.+++|+|.++ +|||..|+|||..||.|||||.  +|.
T Consensus         5 ~~~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgSDE~--~C~   43 (44)
T 3a7q_B            5 AKECEKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDED--DCP   43 (44)
T ss_dssp             ---CCTTEEECTTS-CEEEGGGTTSSSCCSSSSTTTS--CC-
T ss_pred             CCCCCCCceEcCCC-CEeChhhccCCCCCCCCCcccc--CCC
Confidence            34688899999998 9999999999999999999998  785

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.15  E-value=2.4e-11  Score=82.32  Aligned_cols=39  Identities=36%  Similarity=0.926  Sum_probs=35.1

Q ss_pred             CCCcCCCceeeCC-CCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          522 NITCPPHHLKCAN-TNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       522 ~~~C~~~~f~C~~-~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      ...|.+++|+|.+ + +|||..|+|||..||.|||||.  +|.
T Consensus         4 ~~~C~~~~f~C~~~g-~CI~~~~~CDg~~DC~DgSDE~--~C~   43 (43)
T 2jm4_A            4 DVKCSLGYFPCGNIT-KCLPQLLHCNGVDDCGNQADED--NCG   43 (43)
T ss_dssp             SCSCCTTEEECSSSS-CEEEGGGTTSSCCCSSSCCTTS--SCC
T ss_pred             CCCCCCCeeECCCCC-eEcCHhhccCCCCCCCCCcccC--CCC
Confidence            3467889999999 6 9999999999999999999998  774

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.15  E-value=1.4e-11  Score=95.54  Aligned_cols=54  Identities=37%  Similarity=0.782  Sum_probs=45.5

Q ss_pred             CCCCCCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCC-CCCC-CCCCCCCCCC
Q psy952          519 CPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDP-LHCQ-QRTCPQNSFR  573 (573)
Q Consensus       519 C~~~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~-~~c~-~~~c~~~~f~  573 (573)
                      | ....|.+++|+|.+...|||.+|+|||..||.|||||.. .+|. ..+|.+.+||
T Consensus         4 C-~~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~   59 (80)
T 2kny_A            4 L-EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSG   59 (80)
T ss_dssp             C-SSCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSC
T ss_pred             C-CCCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccch
Confidence            6 356788999999853399999999999999999999974 3586 4789999996

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.14  E-value=2.8e-08  Score=99.88  Aligned_cols=228  Identities=9%  Similarity=0.009  Sum_probs=147.7

Q ss_pred             CEEEEE--ecccEEEEEcCCCceeecccCCc--ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC------
Q psy952           17 PWLIFS--NKYYVRNMSLDATQYSLVHQDLL--NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD------   86 (573)
Q Consensus        17 ~~l~~s--~~~~I~~i~l~g~~~~~~~~~~~--~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~------   86 (573)
                      ..++++  ..+.|+++++........+....  .+.++++++.++.||++....+.|+.+++.+......+...      
T Consensus        11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~   90 (349)
T 1jmx_B           11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV   90 (349)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred             CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccc
Confidence            344444  45789999997655432222222  58899999988899999988899999999765443333221      


Q ss_pred             CCCcceeEEeecCCcEEEEeCC-----------CCeEEEEEcCCCceeE---eccCCCCcceEEEeCCCceEEEEecCCc
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRH-----------SKQLDVAELDGTNRKT---LKTAIQDPRGITLHPGIGYVYFSSWNLQ  152 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~-----------~~~I~~~~ldg~~~~~---l~~~~~~P~~Iavdp~~g~LYwtd~~~~  152 (573)
                      ...|.++++++.++.||++...           .+.|.+.++.......   .......+.+|+++|... ||++..   
T Consensus        91 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~---  166 (349)
T 1jmx_B           91 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP---  166 (349)
T ss_dssp             EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS---
T ss_pred             cccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEccC---
Confidence            1238999999989999999844           5789999987532211   222334588999999655 887642   


Q ss_pred             CeEEEEeccCCCcEEEEecCCC----------------------------------------------------------
Q psy952          153 AYIGKIGMDGSNFTRILTHEDD----------------------------------------------------------  174 (573)
Q Consensus       153 ~~I~r~~ldG~~~~~l~~~~~~----------------------------------------------------------  174 (573)
                       .|.+.++........+. ...                                                          
T Consensus       167 -~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  244 (349)
T 1jmx_B          167 -DIYKMDVKTGKYTVALP-LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGK  244 (349)
T ss_dssp             -SEEEECTTTCCEEEEEC-STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCC
T ss_pred             -cEEEEeCCCCceecccc-ccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCc
Confidence             26666654333222221 010                                                          


Q ss_pred             ---------CCCCceEEEec-cCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee--CCeEEEecCCCCce
Q psy952          175 ---------IAWPNALTLDY-FTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSI  242 (573)
Q Consensus       175 ---------l~~P~glaiD~-~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I  242 (573)
                               -..|.++++++ .+++||++   .+.|..+++........+...  ..|.++++.  +++||++. ..+.|
T Consensus       245 ~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~-~~~~v  318 (349)
T 1jmx_B          245 THTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGG-TFNDL  318 (349)
T ss_dssp             EEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEES-BSSEE
T ss_pred             EEecccccCCCcceeeEecCCCCCEEEEE---cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEec-CCCeE
Confidence                     01345666777 78888888   678999998765543333321  356777774  45788864 45888


Q ss_pred             EEEeccCCcceEEE
Q psy952          243 NRADKFNGRDYRVL  256 (573)
Q Consensus       243 ~~~~~~~g~~~~~l  256 (573)
                      ...+..+++.+..+
T Consensus       319 ~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          319 AVFNPDTLEKVKNI  332 (349)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEeccccceeeee
Confidence            88887777655554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.13  E-value=2.8e-08  Score=107.65  Aligned_cols=230  Identities=7%  Similarity=-0.036  Sum_probs=155.8

Q ss_pred             CCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC--CCcceEEEcCCCCCcc
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG--STEKERVIRHDSHGLE   91 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~--g~~~~~i~~~~~~~p~   91 (573)
                      ..++++++  .+.|..|+++.......+.....|.++++++.+++||+++. .+.|..+++.  ......-+..+ ..|.
T Consensus       166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i~~G-~~P~  243 (567)
T 1qks_A          166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIG-SEAR  243 (567)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECC-SEEE
T ss_pred             CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEEecC-CCCc
Confidence            34666666  47899999987655433344456889999999999999874 5689999995  22222223334 4799


Q ss_pred             eeEEe----ecCCcEEEEeCCCCeEEEEEcCCCceeEecc--C----------CCCcceEEEeCCCceEEEEecCCcCeE
Q psy952           92 GLAVD----WVGRKLYWLDRHSKQLDVAELDGTNRKTLKT--A----------IQDPRGITLHPGIGYVYFSSWNLQAYI  155 (573)
Q Consensus        92 glavD----~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~--~----------~~~P~~Iavdp~~g~LYwtd~~~~~~I  155 (573)
                      +|+++    +.++.||+++...+.|.+++.........+.  +          ...+.+|++.+....+|++. ...++|
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-~~~g~v  322 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-KETGKI  322 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-TTTTEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-cCCCeE
Confidence            99999    5889999999999999999865543322221  1          11345788887655555554 456788


Q ss_pred             EEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-Ccccee-EEEee-e--CC
Q psy952          156 GKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHV-FALTL-F--ED  230 (573)
Q Consensus       156 ~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~~~~~p-~~ia~-~--~~  230 (573)
                      ..++........+.. ...-..|.++.+++++.++|++....++|..+++........+.- ...+|| .|+.+ .  .+
T Consensus       323 ~~vd~~~~~~~~v~~-i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g  401 (567)
T 1qks_A          323 LLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFG  401 (567)
T ss_dssp             EEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTE
T ss_pred             EEEecCCCccceeee-eeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCC
Confidence            888876543222221 123356889999999999999999999999999875544333332 336777 46554 3  35


Q ss_pred             eEEEe-cCCCCceEEEeccC
Q psy952          231 HIYWT-DWNTKSINRADKFN  249 (573)
Q Consensus       231 ~lywt-d~~~~~I~~~~~~~  249 (573)
                      .+|+| ..+.+.|..++..+
T Consensus       402 ~v~~t~~~g~~~Vsvid~~~  421 (567)
T 1qks_A          402 PVWATSHMGDDSVALIGTDP  421 (567)
T ss_dssp             EEEEEEBSSSSEEEEEECCT
T ss_pred             cEEEeCCCCCCeEEEecCCC
Confidence            67665 45668899888655

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.12  E-value=1.5e-08  Score=96.37  Aligned_cols=182  Identities=14%  Similarity=0.120  Sum_probs=123.5

Q ss_pred             CEEEEEecc----cEEEEEcCCCceeec--ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           17 PWLIFSNKY----YVRNMSLDATQYSLV--HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        17 ~~l~~s~~~----~I~~i~l~g~~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      ..|+.+...    .|+++++...++...  +.......||+++  +++||.+++..+.+++++++......-+..+   .
T Consensus        31 ~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~---~  105 (243)
T 3mbr_X           31 GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRARFRYP---G  105 (243)
T ss_dssp             TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEECS---S
T ss_pred             CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEEEeCC---C
Confidence            467888654    799999986654322  2333345677776  7999999999999999999764433333333   2


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee-Eec-c----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK-TLK-T----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~-~l~-~----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      .|.++.+.+++||++|. .++|.++|....... .+. .    .+..++.|..  .+|.||...|. ...|.++++.-..
T Consensus       106 ~Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~--~~G~lyanvw~-s~~I~vIDp~tG~  181 (243)
T 3mbr_X          106 EGWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW--VNGELLANVWL-TSRIARIDPASGK  181 (243)
T ss_dssp             CCCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE--ETTEEEEEETT-TTEEEEECTTTCB
T ss_pred             CceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE--eCCEEEEEECC-CCeEEEEECCCCC
Confidence            34444556899999995 789999998764432 222 1    2233444443  47899988886 5689999886444


Q ss_pred             cEEEEecC-----------CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952          165 FTRILTHE-----------DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       165 ~~~l~~~~-----------~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      ....+...           .....|||||+|+.+++||++--.-.+++.+.+..
T Consensus       182 V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~~~  235 (243)
T 3mbr_X          182 VVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIRLTP  235 (243)
T ss_dssp             EEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEEECC
T ss_pred             EEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEEEec
Confidence            43333211           12346899999999999999988888888877643

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.11  E-value=2.4e-08  Score=102.13  Aligned_cols=233  Identities=12%  Similarity=0.035  Sum_probs=143.5

Q ss_pred             EEEEEec---ccEEEEEc--CCCceeecc----cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC-CCcceEEEcC-C
Q psy952           18 WLIFSNK---YYVRNMSL--DATQYSLVH----QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG-STEKERVIRH-D   86 (573)
Q Consensus        18 ~l~~s~~---~~I~~i~l--~g~~~~~~~----~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~i~~~-~   86 (573)
                      .|+++..   ..|+.+.+  +...++.+.    .....|..|++++.++.||.++..  .|..++++ .+....+... .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~--~v~~~~~~~~g~~~~~~~~~~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK--KWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT--EEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc--eEEEEEECCCCCEEEeeEeec
Confidence            3455542   35766655  344443331    244578899999988899999876  77777764 2222222221 1


Q ss_pred             CCCcceeEEeecCCcE--EEEe-------C-----CCCeEEEEEcC--CCceeEec----cCCCCcceEEEeCCCceEEE
Q psy952           87 SHGLEGLAVDWVGRKL--YWLD-------R-----HSKQLDVAELD--GTNRKTLK----TAIQDPRGITLHPGIGYVYF  146 (573)
Q Consensus        87 ~~~p~glavD~~~~~L--Y~td-------~-----~~~~I~~~~ld--g~~~~~l~----~~~~~P~~Iavdp~~g~LYw  146 (573)
                      ...|..+++++.++.|  |.++       .     ..+.|.+.+++  |.....+.    .....|.+++++|...+||+
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            1358889999877754  4443       1     45677777764  54433332    24567999999998888999


Q ss_pred             EecCCcCeEEEEecc-CCCcEEEEecC-C-CCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC---CCcE---EEEEeCC
Q psy952          147 SSWNLQAYIGKIGMD-GSNFTRILTHE-D-DIAWPNALTLDYFTERLYWADAHLDYIASVDLD---GKHK---HIVISGQ  217 (573)
Q Consensus       147 td~~~~~~I~r~~ld-G~~~~~l~~~~-~-~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d---G~~~---~~l~~~~  217 (573)
                      ++.+ ...|...+++ ....+.+.... . ....|.++++++++++||++....+.|..++++   |...   +.+..-.
T Consensus       162 ~~~~-~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~  240 (365)
T 1jof_A          162 ADLT-ANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP  240 (365)
T ss_dssp             EETT-TTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred             EcCC-CCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence            9865 4578888876 22222221101 1 245799999999999999999878888877665   3321   1222110


Q ss_pred             -cc---c-------eeEEEe-ee--CCeEEEecCCCC-----ceEEEecc-CCcce
Q psy952          218 -KV---P-------HVFALT-LF--EDHIYWTDWNTK-----SINRADKF-NGRDY  253 (573)
Q Consensus       218 -~~---~-------~p~~ia-~~--~~~lywtd~~~~-----~I~~~~~~-~g~~~  253 (573)
                       ..   .       .|.+|+ +.  +.+||+++...+     +|...+.. +|+..
T Consensus       241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~  296 (365)
T 1jof_A          241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE  296 (365)
T ss_dssp             TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred             CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence             00   1       588888 73  457999887655     66655532 45533

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=99.11  E-value=3.6e-11  Score=83.92  Aligned_cols=44  Identities=43%  Similarity=0.982  Sum_probs=37.1

Q ss_pred             CCCcCCCceeeC-CCCceecCCcCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy952          522 NITCPPHHLKCA-NTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQN  570 (573)
Q Consensus       522 ~~~C~~~~f~C~-~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~~~c~~~  570 (573)
                      +..|.+.+|+|. ++ +|||..|+|||..||.|||||.  .|.  .|.++
T Consensus         4 ~~~C~~~~F~C~~~g-~CI~~~~~CDG~~DC~DgSDE~--~C~--~C~~n   48 (50)
T 2knx_A            4 GKTCGPSSFSCPGTH-VCVPERWLCDGDKDCADGADES--IAA--GCLYN   48 (50)
T ss_dssp             TCTTCTTEEEETTTT-EEEETTTTTSSSCCSTTCGGGS--GGG--TCCCC
T ss_pred             CCCCCCCcEEcCCCC-eEcChhhcCCCCCCCCCCCccc--ccc--CCCCC
Confidence            356888999996 77 9999999999999999999998  664  36543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.11  E-value=4.2e-08  Score=94.10  Aligned_cols=191  Identities=16%  Similarity=0.096  Sum_probs=131.8

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK  123 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~  123 (573)
                      ....||.|+  ++.||.+....++|.++++..... ..+ ...-...+||+++  +++||.+....+.|.++|+......
T Consensus        55 ~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           55 AFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             CCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             cccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence            345799998  689999999988999999976543 333 2221234567765  7899999999999999998754433


Q ss_pred             EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe---cCCCCCCCceEEEeccCCeEEEEeCCCCeE
Q psy952          124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT---HEDDIAWPNALTLDYFTERLYWADAHLDYI  200 (573)
Q Consensus       124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~---~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  200 (573)
                      .-+.....+.||+-|  .+.||.++ + ..+|..++........-+.   ....+..++.|...  +++||...+..+.|
T Consensus       130 ~ti~~~~eGwGLt~D--g~~L~vSd-G-s~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I  203 (268)
T 3nok_A          130 RTTRYSGEGWGLCYW--NGKLVRSD-G-GTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDV  203 (268)
T ss_dssp             EEEECSSCCCCEEEE--TTEEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEE
T ss_pred             EEEeCCCceeEEecC--CCEEEEEC-C-CCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeE
Confidence            222222345666655  68999999 4 6789988876544332221   01124455676655  88999999999999


Q ss_pred             EEEeCCCCcEEEEEe-CC-----------ccceeEEEeee--CCeEEEecCCCCceEEEe
Q psy952          201 ASVDLDGKHKHIVIS-GQ-----------KVPHVFALTLF--EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       201 ~~~~~dG~~~~~l~~-~~-----------~~~~p~~ia~~--~~~lywtd~~~~~I~~~~  246 (573)
                      .++|+....+...+. ..           ...-|.|||+.  .++||+|.-.-.+++.+.
T Consensus       204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred             EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence            999997555433332 21           02368999996  578999987777888774

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.10  E-value=1.6e-07  Score=89.40  Aligned_cols=197  Identities=12%  Similarity=0.016  Sum_probs=132.0

Q ss_pred             cccCCcceEEEEEEcCCCEEEEEECCC--CeEEEEEcCCCcceEEEc-CCCCCcceeEEeecCCcEEEEeCCCCeEEEEE
Q psy952           40 VHQDLLNVVAMDFHYKENRFYFADVAA--KTIYRSRVGSTEKERVIR-HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAE  116 (573)
Q Consensus        40 ~~~~~~~~~~v~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~i~~-~~~~~p~glavD~~~~~LY~td~~~~~I~~~~  116 (573)
                      +........||.|+.  ++||.+....  .+|.++++........+. ..-...+||+++  +++||.+....+.|.+++
T Consensus        16 phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D   91 (243)
T 3mbr_X           16 PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYD   91 (243)
T ss_dssp             ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred             CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEE
Confidence            344445567999994  8999997654  589999998665433232 221233556654  899999999999999999


Q ss_pred             cCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec-C--CCCCCCceEEEeccCCeEEEE
Q psy952          117 LDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH-E--DDIAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       117 ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~-~--~~l~~P~glaiD~~~~~LYw~  193 (573)
                      +.......-+.....+.||+  +..+.||++| + ..+|..++........-+.. .  ..+..++.|...  +++||..
T Consensus        92 ~~tl~~~~ti~~~~~Gwglt--~dg~~L~vSd-g-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyan  165 (243)
T 3mbr_X           92 LATLTPRARFRYPGEGWALT--SDDSHLYMSD-G-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLAN  165 (243)
T ss_dssp             TTTTEEEEEEECSSCCCEEE--ECSSCEEEEC-S-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEE
T ss_pred             CCcCcEEEEEeCCCCceEEe--eCCCEEEEEC-C-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEE
Confidence            87544332222223456665  4478999999 4 67899888765443222210 1  123445666654  8999999


Q ss_pred             eCCCCeEEEEeCCCCcEEEEEe-CC-----------ccceeEEEeee--CCeEEEecCCCCceEEEe
Q psy952          194 DAHLDYIASVDLDGKHKHIVIS-GQ-----------KVPHVFALTLF--EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       194 D~~~~~I~~~~~dG~~~~~l~~-~~-----------~~~~p~~ia~~--~~~lywtd~~~~~I~~~~  246 (573)
                      .+..+.|.++|+....+.-.+. ..           ...-|.|||+.  .++||+|.-.-.+++.+.
T Consensus       166 vw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~  232 (243)
T 3mbr_X          166 VWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRWPMLYEIR  232 (243)
T ss_dssp             ETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             ECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCCCcEEEEE
Confidence            9999999999997555543332 21           12368999996  578999987777888775

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.10  E-value=9.7e-09  Score=98.55  Aligned_cols=179  Identities=13%  Similarity=0.128  Sum_probs=122.2

Q ss_pred             CEEEEEecc----cEEEEEcCCCcee--ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           17 PWLIFSNKY----YVRNMSLDATQYS--LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        17 ~~l~~s~~~----~I~~i~l~g~~~~--~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      ..|+.+...    .|+++++...++.  +.+.......||+++  +++||.++...+.+++++++......-+..+ ...
T Consensus        53 ~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~-~eG  129 (262)
T 3nol_A           53 GYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-GEG  129 (262)
T ss_dssp             TEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEEEEECS-SCC
T ss_pred             CEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEEEEECC-CCc
Confidence            467777743    7999999866543  222333334667776  7899999999999999999765433233322 234


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEec-c----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLK-T----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~-~----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      .||+  +.++.||.+|. .++|.++|..... ...+. .    .+..++.|...  .|.||...|. ...|.++++.-..
T Consensus       130 ~glt--~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~-~~~I~vIDp~tG~  203 (262)
T 3nol_A          130 WGLT--HNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQ-TNKIVRIDPETGK  203 (262)
T ss_dssp             CCEE--ECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-SSEEEEECTTTCB
T ss_pred             eEEe--cCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEcc-CCeEEEEECCCCc
Confidence            4555  55899999995 7899999987533 33332 1    22334556654  6899999886 5689999886444


Q ss_pred             cEEEEecCCC-----------CCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952          165 FTRILTHEDD-----------IAWPNALTLDYFTERLYWADAHLDYIASVDL  205 (573)
Q Consensus       165 ~~~l~~~~~~-----------l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~  205 (573)
                      ....+. ...           ...|||||+|+.+++||++--.-.+++.+.+
T Consensus       204 V~~~Id-~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          204 VTGIID-LNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             EEEEEE-CTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEEEEE-CCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence            433332 222           3468999999999999999887788877665

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.08  E-value=3.1e-11  Score=83.60  Aligned_cols=38  Identities=42%  Similarity=1.009  Sum_probs=33.8

Q ss_pred             CCcCCCceeeC-----CCCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          523 ITCPPHHLKCA-----NTNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       523 ~~C~~~~f~C~-----~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      ..|.+++|+|.     ++ +|||.+|+|||..||.|||||.  +|+
T Consensus         5 ~~C~~~~F~C~~~~~~~g-~CIp~~~~CDG~~DC~DgSDE~--~C~   47 (47)
T 1k7b_A            5 GSCPPGQFRCSEPPGAHG-ECYPQDWLCDGHPDCDDGRDEW--GCG   47 (47)
T ss_dssp             -CCSTTEECCSSCTTSCC-CCEEGGGSSCSSCCSSSSTTTG--GGC
T ss_pred             CCCCCCceEcCCCCCCCC-cCCCccccCCCcCCCCCCcccC--CCC
Confidence            45788999998     56 9999999999999999999998  774

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.08  E-value=4.2e-12  Score=116.43  Aligned_cols=61  Identities=26%  Similarity=0.633  Sum_probs=54.0

Q ss_pred             CCCCCCCCCCcccccCCCCCCCcCCCceee--CCCCceecCCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy952          503 VNDCKDNITSDETHARCPSNITCPPHHLKC--ANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR  573 (573)
Q Consensus       503 ~~dC~dg~~~de~~~~C~~~~~C~~~~f~C--~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~~~c~~~~f~  573 (573)
                      ..+|.++  +||.+  |   ..|.+++|+|  .+| +|||.+|+|||.+||+|||||.  +|+..+|.+++|+
T Consensus        40 ~~~c~d~--sDE~~--C---~~C~~~~F~C~~~~g-~CIp~~~~CDG~~DC~DgSDE~--~C~~~~C~~~~F~  102 (215)
T 2gtl_O           40 AGSLRHR--VEELE--D---PSCDEHEHQCGGDDP-QCISKLFVCDGHNDCRNGEDEK--DCTLPTKAGDKFI  102 (215)
T ss_dssp             HHHHHHH--HHHHS--C---CSSCTTEEECCSSSC-CEEEGGGTTSSSCCSSSCHHHH--CCCCSSCTTCEEE
T ss_pred             cccCCcc--hhhcc--C---CCCCCcceeeCCCCC-cCccccccCCCCCcCCCccccc--CCCCCCcCCCcee
Confidence            3467778  88888  8   3599999999  677 9999999999999999999998  9999999999885

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.07  E-value=8.2e-08  Score=100.17  Aligned_cols=226  Identities=14%  Similarity=0.098  Sum_probs=158.9

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC--CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA--KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ..|+.+++++.....+......+..++|.+.+++|+++....  ..|+.+++.+.....+... -..+..+++.+.++.|
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~~~~~~~~~spdg~~l  237 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PRHNGAPAFSPDGSKL  237 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-SSCEEEEEECTTSSEE
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-CCcccCEEEcCCCCEE
Confidence            689999999876665554455688999999999999987654  5899999987665544432 2467789999888889


Q ss_pred             EEEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952          103 YWLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPN  179 (573)
Q Consensus       103 Y~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~  179 (573)
                      +++-..  ...|++.++.+.....+.........+++.|...+|+++.. .....|++.++++...+.+.   .......
T Consensus       238 a~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~---~~~~~~~  314 (415)
T 2hqs_A          238 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT---WEGSQNQ  314 (415)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC---CSSSEEE
T ss_pred             EEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe---cCCCccc
Confidence            887643  34699999987666555555456788999998887887763 23458999999877655443   2223456


Q ss_pred             eEEEeccCCeEEEEeCC--CCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCC--ceEEEeccCCcce
Q psy952          180 ALTLDYFTERLYWADAH--LDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTK--SINRADKFNGRDY  253 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~--~I~~~~~~~g~~~  253 (573)
                      .+++.+.+.+|+++...  ...|+.+++++...+.+...   ....++++  .+..|+++....+  .|+.++. +|...
T Consensus       315 ~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~-~g~~~  390 (415)
T 2hqs_A          315 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVST-DGRFK  390 (415)
T ss_dssp             EEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEET-TSCCE
T ss_pred             CeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEEC-CCCcE
Confidence            78999989999888654  45899999988776554432   24566666  3556776654433  6888874 45555


Q ss_pred             EEEcc
Q psy952          254 RVLRN  258 (573)
Q Consensus       254 ~~l~~  258 (573)
                      +.|..
T Consensus       391 ~~l~~  395 (415)
T 2hqs_A          391 ARLPA  395 (415)
T ss_dssp             EECCC
T ss_pred             EEeeC
Confidence            55443

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.06  E-value=2.3e-13  Score=124.77  Aligned_cols=124  Identities=19%  Similarity=0.344  Sum_probs=91.9

Q ss_pred             CCCCCCCCCCCCCCccCCcCCCCCCcCCCCCCCccccCCccccCCCCCCCCCCCCCCCCC--CCCCCCC-ccC-CCCCCC
Q psy952          432 FDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC--PLESLGS-VCN-GVNDCK  507 (573)
Q Consensus       432 ~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d~sDe~~~~C--~~c~~~~-~Cd-~~~dC~  507 (573)
                      ...+|.|+|||.+  |.  .|.+++|+|.. .+++|||..|+|||.+||.|||||  .+|  ++|.+.. .|. ....|.
T Consensus        39 ~~~~c~d~sDE~~--C~--~C~~~~F~C~~-~~g~CIp~~~~CDG~~DC~DgSDE--~~C~~~~C~~~~F~c~~~~~~C~  111 (215)
T 2gtl_O           39 KAGSLRHRVEELE--DP--SCDEHEHQCGG-DDPQCISKLFVCDGHNDCRNGEDE--KDCTLPTKAGDKFIGDVCFDHCT  111 (215)
T ss_dssp             HHHHHHHHHHHHS--CC--SSCTTEEECCS-SSCCEEEGGGTTSSSCCSSSCHHH--HCCCCSSCTTCEEEEEEEEESSC
T ss_pred             ccccCCcchhhcc--CC--CCCCcceeeCC-CCCcCccccccCCCCCcCCCcccc--cCCCCCCcCCCceeeeECCCccc
Confidence            3457889999987  74  59999999941 168999999999999999999999  889  4576544 452 223477


Q ss_pred             CCCCCcccccCCCCCCCcC--CCceeeCCC--Cceec-----------CCcCcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy952          508 DNITSDETHARCPSNITCP--PHHLKCANT--NICVE-----------PYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSF  572 (573)
Q Consensus       508 dg~~~de~~~~C~~~~~C~--~~~f~C~~~--~~Ci~-----------~~~~Cdg~~dC~d~sDe~~~~c~~~~c~~~~f  572 (573)
                      +.  +++..  |.  ..|.  ..+|.|.++  ..||.           .+|.|||..|  ++|+|.  .|....|...+|
T Consensus       112 ~~--~~~~~--c~--~~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el--~~~pp~~~~l~f  181 (215)
T 2gtl_O          112 KR--RPEHM--TL--AFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS--FADHRL--TIHPPEEDGLGL  181 (215)
T ss_dssp             SS--CCSEE--EE--EEEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEE--EECCSSTTTEEE
T ss_pred             CC--CCCCc--ee--eeeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec--CCccee--eecCCCCCCcee
Confidence            77  77765  52  3444  467888876  46888           8999999999  699997  675544544333

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.06  E-value=1.3e-07  Score=90.63  Aligned_cols=192  Identities=11%  Similarity=0.075  Sum_probs=130.0

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCC--eEEEEEcCCCcceEEEcCCCCCc--ceeEEeecCCcEEEEeCCCCeEEEEEcC
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAK--TIYRSRVGSTEKERVIRHDSHGL--EGLAVDWVGRKLYWLDRHSKQLDVAELD  118 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~--~I~~~~~~g~~~~~i~~~~~~~p--~glavD~~~~~LY~td~~~~~I~~~~ld  118 (573)
                      .-....||.|+  ++.||.+....+  +|.++++.......-+..+ ..+  +||+++  +++||.+....+.+.++|+.
T Consensus        41 ~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           41 TKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDW--KDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             TTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEE--TTEEEEEESSSSEEEEEETT
T ss_pred             CCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEe--CCEEEEEEeeCCEEEEEECc
Confidence            33445899998  579999986544  8999999865443322222 244  566665  88999999989999999987


Q ss_pred             CCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecC---CCCCCCceEEEeccCCeEEEEe
Q psy952          119 GTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE---DDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       119 g~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~---~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      .... .++-- ...+.||+-  ..+.||.++ + ..+|..++........-+...   ..+..+|.|...  +++||+..
T Consensus       116 t~~~~~ti~~-~~eG~glt~--dg~~L~~Sd-G-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~  188 (262)
T 3nol_A          116 NLRQVRSFNY-DGEGWGLTH--NDQYLIMSD-G-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANV  188 (262)
T ss_dssp             TCCEEEEEEC-SSCCCCEEE--CSSCEEECC-S-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEE
T ss_pred             cCcEEEEEEC-CCCceEEec--CCCEEEEEC-C-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEE
Confidence            5443 33332 224556664  468999998 4 578999887644332222101   123455667664  78999999


Q ss_pred             CCCCeEEEEeCCCCcEEEEEe-CCc----------cceeEEEeee--CCeEEEecCCCCceEEEe
Q psy952          195 AHLDYIASVDLDGKHKHIVIS-GQK----------VPHVFALTLF--EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       195 ~~~~~I~~~~~dG~~~~~l~~-~~~----------~~~p~~ia~~--~~~lywtd~~~~~I~~~~  246 (573)
                      +..+.|.++|+....+...+. ...          ..-|.|||+.  .++||+|.-.-.+++.+.
T Consensus       189 w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~ev~  253 (262)
T 3nol_A          189 WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFEIT  253 (262)
T ss_dssp             TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEEEE
Confidence            999999999997555543333 210          1367999996  578999977777888765

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=99.05  E-value=4.2e-11  Score=83.23  Aligned_cols=40  Identities=38%  Similarity=0.894  Sum_probs=36.8

Q ss_pred             CCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCCC
Q psy952          523 ITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ  564 (573)
Q Consensus       523 ~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~  564 (573)
                      ..|.+++|+|.++.+||+.+|+|||..||.|||||.  +|..
T Consensus         5 ~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~--~C~~   44 (48)
T 2i1p_A            5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEA--GCPT   44 (48)
T ss_dssp             CCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHH--SSCS
T ss_pred             CCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccc--cCCC
Confidence            568899999999868999999999999999999999  8875

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.05  E-value=2.2e-07  Score=100.47  Aligned_cols=246  Identities=15%  Similarity=0.124  Sum_probs=165.9

Q ss_pred             CEEEEEe--cccEEEEEcCCCceeecccC------------CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-e-
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSLVHQD------------LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-E-   80 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~~------------~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~-   80 (573)
                      .+|++++  ...|..++....+....+..            ...+.+|++.+..+.+|++....+.|..+++..... . 
T Consensus       238 ~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~  317 (543)
T 1nir_A          238 RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV  317 (543)
T ss_dssp             TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE
T ss_pred             CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee
Confidence            4666665  46788888765443222211            125788999988999999999999999999865322 2 


Q ss_pred             EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCC--Cc-ceEEE-eCCCceEEEEecCCcCeEE
Q psy952           81 RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQ--DP-RGITL-HPGIGYVYFSSWNLQAYIG  156 (573)
Q Consensus        81 ~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~--~P-~~Iav-dp~~g~LYwtd~~~~~~I~  156 (573)
                      ..+..+ ..|.++++++.++.||++....++|.+.++........+....  +| +++++ +|..|.+|++.......|.
T Consensus       318 ~~i~~~-~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~  396 (543)
T 1nir_A          318 TSIGAA-PFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS  396 (543)
T ss_dssp             EEEECC-SSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEE
T ss_pred             EEeccC-cCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEE
Confidence            122333 5799999999999999999888899999987554433333222  33 35554 7877899988743356788


Q ss_pred             EEeccC--------CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC------CCeEEEEeCCCCcE--EEEE------
Q psy952          157 KIGMDG--------SNFTRILTHEDDIAWPNALTLDYFTERLYWADAH------LDYIASVDLDGKHK--HIVI------  214 (573)
Q Consensus       157 r~~ldG--------~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~------~~~I~~~~~dG~~~--~~l~------  214 (573)
                      ..+++.        ...++|-   ..-..+..|++.+.+.+||+....      .+.|..++.+....  +++.      
T Consensus       397 v~d~~~~~~~~~~~~~v~~l~---~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~  473 (543)
T 1nir_A          397 LIGTDPKNHPQYAWKKVAELQ---GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD  473 (543)
T ss_dssp             EEECCTTTCTTTBTSEEEEEE---CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred             EEEeCCCCCchhcCeEEEEEE---cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc
Confidence            888764        2222332   223456789999888888876531      45899999874433  3331      


Q ss_pred             -eCCccceeEEEee--eCCeEEEecCC----CCceEEEeccCCcceEEEcc-cCCCceeee
Q psy952          215 -SGQKVPHVFALTL--FEDHIYWTDWN----TKSINRADKFNGRDYRVLRN-TTHRPYDIH  267 (573)
Q Consensus       215 -~~~~~~~p~~ia~--~~~~lywtd~~----~~~I~~~~~~~g~~~~~l~~-~~~~p~~i~  267 (573)
                       ... ...+..+++  .+.+||++.|.    .+.|..++..+++...++.. .+..|.|.-
T Consensus       474 ~~~~-~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~~~~~p~g~~  533 (543)
T 1nir_A          474 LGEG-AKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTGKF  533 (543)
T ss_dssp             CCSS-CCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCTTCCSEEEEE
T ss_pred             cCCC-CCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeecCCCccCCCeee
Confidence             111 356777777  57789999873    58899999999988887753 355676643

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=99.04  E-value=2.8e-11  Score=82.43  Aligned_cols=35  Identities=49%  Similarity=1.139  Sum_probs=32.9

Q ss_pred             CCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCC
Q psy952          523 ITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED  558 (573)
Q Consensus       523 ~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~  558 (573)
                      ..|.+++|+|.++ +|||..|+|||..||.|+|||.
T Consensus         3 ~~C~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~   37 (44)
T 1j8e_A            3 HSCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDET   37 (44)
T ss_dssp             SSSCTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGS
T ss_pred             CCCCCCceEeCCC-CeEecCcccCCCCCCCCCCCCC
Confidence            3578899999999 9999999999999999999998

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.03  E-value=1.1e-08  Score=98.20  Aligned_cols=179  Identities=16%  Similarity=0.157  Sum_probs=121.7

Q ss_pred             CEEEEEecc--cEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952           17 PWLIFSNKY--YVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL   93 (573)
Q Consensus        17 ~~l~~s~~~--~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl   93 (573)
                      ..|+++...  .|+++++...+. ..++.......||+++  +++||.+.+..+.+++++++......-+... ..+.||
T Consensus        65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGL  141 (268)
T 3nok_A           65 GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGL  141 (268)
T ss_dssp             TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCE
T ss_pred             CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEE
Confidence            467777753  599999976543 2223333334667775  7899999999999999998764433223322 234556


Q ss_pred             EEeecCCcEEEEeCCCCeEEEEEcCCCcee-Eec-c----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE
Q psy952           94 AVDWVGRKLYWLDRHSKQLDVAELDGTNRK-TLK-T----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR  167 (573)
Q Consensus        94 avD~~~~~LY~td~~~~~I~~~~ldg~~~~-~l~-~----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~  167 (573)
                      +.  .+++||.+| +.++|.++|....... .+. .    .+..++.|...  .|.||...|. ...|.++++.-.....
T Consensus       142 t~--Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~-s~~I~vIDp~TG~V~~  215 (268)
T 3nok_A          142 CY--WNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWH-SSDVLEIDPATGTVVG  215 (268)
T ss_dssp             EE--ETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-CSEEEEECTTTCBEEE
T ss_pred             ec--CCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECC-CCeEEEEeCCCCcEEE
Confidence            55  488999999 5889999998764432 222 1    23345555554  7899998875 5689999986444333


Q ss_pred             EEecCC------------CCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952          168 ILTHED------------DIAWPNALTLDYFTERLYWADAHLDYIASVDL  205 (573)
Q Consensus       168 l~~~~~------------~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~  205 (573)
                      .+. ..            ....|||||+|+.+++||++--.-.+++.+.+
T Consensus       216 ~Id-l~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~  264 (268)
T 3nok_A          216 VID-ASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKLWPRLFEVRL  264 (268)
T ss_dssp             EEE-CHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETTCSEEEEEEE
T ss_pred             EEE-CCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCCCCceEEEEE
Confidence            332 11            23478999999999999999887788887765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.00  E-value=4.4e-08  Score=100.19  Aligned_cols=185  Identities=18%  Similarity=0.145  Sum_probs=125.2

Q ss_pred             cccEEEEEcC--CCceeecc----cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC-CCcceEE--Ec--CCCCCcce
Q psy952           24 KYYVRNMSLD--ATQYSLVH----QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG-STEKERV--IR--HDSHGLEG   92 (573)
Q Consensus        24 ~~~I~~i~l~--g~~~~~~~----~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~i--~~--~~~~~p~g   92 (573)
                      ...|..++++  |.....+.    .....+.+++|++.++.||+++...+.|+.++++ .+....+  +.  .....|.+
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~  197 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW  197 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence            3456666664  43221111    2345789999999888999999888899999987 3333222  21  11357999


Q ss_pred             eEEeecCCcEEEEeCCCCeEEEEEcC---CCcee---Ee--cc-CC---C-------CcceEE-EeCCCceEEEEecCCc
Q psy952           93 LAVDWVGRKLYWLDRHSKQLDVAELD---GTNRK---TL--KT-AI---Q-------DPRGIT-LHPGIGYVYFSSWNLQ  152 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~~I~~~~ld---g~~~~---~l--~~-~~---~-------~P~~Ia-vdp~~g~LYwtd~~~~  152 (573)
                      |++++.++.||+++...+.|.+++++   |....   .+  +. ..   .       .|.+|+ ++|...+||+++.+..
T Consensus       198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~  277 (365)
T 1jof_A          198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCC
Confidence            99999999999999878888888765   43221   12  11 11   2       488999 9998889999986432


Q ss_pred             C----eEEEEecc--CCCcEE--EEecCCCCCCCceEEEec---cCCeEEEEeCCCCeEEEEeCCCCcE
Q psy952          153 A----YIGKIGMD--GSNFTR--ILTHEDDIAWPNALTLDY---FTERLYWADAHLDYIASVDLDGKHK  210 (573)
Q Consensus       153 ~----~I~r~~ld--G~~~~~--l~~~~~~l~~P~glaiD~---~~~~LYw~D~~~~~I~~~~~dG~~~  210 (573)
                      .    .|...+++  |....+  ++  ......|.++++++   ++++||++....+.|..+++++...
T Consensus       278 ~~~~~~i~v~~~~~~g~~~~~~~~~--~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~l  344 (365)
T 1jof_A          278 FELQGYIAGFKLRDCGSIEKQLFLS--PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFL  344 (365)
T ss_dssp             TTSCCEEEEEEECTTSCEEEEEEEE--ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEE
T ss_pred             CCCCCeEEEEEECCCCCEEEeeeee--ecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhhC
Confidence            1    66666654  443221  22  22345689999998   6899999988888888887776633

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.99  E-value=5.9e-11  Score=82.27  Aligned_cols=39  Identities=41%  Similarity=0.991  Sum_probs=34.3

Q ss_pred             CCcCCCceeeC-----CCCceecCCcCcCCCCCCCCCCCCCCCCCCC
Q psy952          523 ITCPPHHLKCA-----NTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ  564 (573)
Q Consensus       523 ~~C~~~~f~C~-----~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~  564 (573)
                      ..|.+++|+|.     ++ +|||.+|+|||+.||.|||||.  +|..
T Consensus         3 ~~C~~~~F~C~~~~~~~~-~CIp~~~~CDG~~DC~DgSDE~--~C~~   46 (47)
T 1jrf_A            3 SRCPPGQFRCSEPPGAHG-ECYPQDWLCDGHPDCDDGRDEW--GCGT   46 (47)
T ss_dssp             CCCCCCCSCSSSCSCCCT-TTSGGGGSSSSSCCSSSSCTTH--HHHC
T ss_pred             CCCCCCeeECCCCCCCCC-eEcCHhhcCCCCcCCCCCcccc--cCCC
Confidence            35788999998     55 9999999999999999999998  7753

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=98.98  E-value=1.3e-10  Score=90.05  Aligned_cols=69  Identities=23%  Similarity=0.498  Sum_probs=54.7

Q ss_pred             CCCCCCCCCCCceecC-CCcccCCCcccCCCCCCCCCCCCCC-CccC-CcCCCCCCcCCCCCCCccccCCcccc
Q psy952          404 MCHNRPCDKDTEFACR-NGHCIPKLWVCDFDNDCGDDSDEPA-YMCR-QRNCTKGWERCPGKTNYRCIPKWLFC  474 (573)
Q Consensus       404 ~C~~~~C~~~~~f~C~-~g~ci~~~~~Cd~~~dC~d~sDE~~-~~C~-~~~C~~~~~~C~~~~~~~c~~~~~~C  474 (573)
                      .|....|.++ +|+|. +|.|||..|+|||..||.|+|||.. ..|. ..+|.+.+|+|... -.+||+..+..
T Consensus         3 ~C~~~~C~~~-~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~-~~~ci~~~~~g   74 (80)
T 2kny_A            3 KLEGKTCGPS-SFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEE-LRVRLASHLRK   74 (80)
T ss_dssp             SCSSCCCSSS-EEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHH-HHHHTTTTTTT
T ss_pred             CCCCCCCCCC-ceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhH-HHHHHHHHHHH
Confidence            5777788888 99998 6899999999999999999999974 2365 35688899999820 05788766554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.98  E-value=1.4e-07  Score=96.48  Aligned_cols=234  Identities=10%  Similarity=0.084  Sum_probs=144.1

Q ss_pred             ccEEEEEcCCCcee--ecccC------CcceEEEEEEcCCCEEEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952           25 YYVRNMSLDATQYS--LVHQD------LLNVVAMDFHYKENRFYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAV   95 (573)
Q Consensus        25 ~~I~~i~l~g~~~~--~~~~~------~~~~~~v~~d~~~~~ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glav   95 (573)
                      +.|.++++......  +.+..      ...|.++++++.+++||+++.. .+.|..+++........+..  .... ..+
T Consensus       109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v--~g~~-~~~  185 (386)
T 3sjl_D          109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV--PDCY-HIF  185 (386)
T ss_dssp             EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSEE-EEE
T ss_pred             CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC--CCcc-eee
Confidence            56888988766542  22221      2368899999999999999975 78999999976543222221  1221 222


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCC-ceeE----eccCCCCcce--EEEeCCCceEEEEecCCcCeEEEEeccCCCcEEE
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGT-NRKT----LKTAIQDPRG--ITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI  168 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~-~~~~----l~~~~~~P~~--Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l  168 (573)
                       +.+.+.|++....+++.++++... ....    ++.....|..  .++++..|.+||...  .+.|+.+++.+...+++
T Consensus       186 -P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~  262 (386)
T 3sjl_D          186 -PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFL  262 (386)
T ss_dssp             -EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEEC
T ss_pred             -cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceee
Confidence             334444555555566666666432 1111    1111112332  466655776666543  46899999987765443


Q ss_pred             EecC--C-----CCCCCc---eEEEeccCCeEEEEeC---------CCCeEEEEeCCCCcE-EEEEeCCccceeEEEeee
Q psy952          169 LTHE--D-----DIAWPN---ALTLDYFTERLYWADA---------HLDYIASVDLDGKHK-HIVISGQKVPHVFALTLF  228 (573)
Q Consensus       169 ~~~~--~-----~l~~P~---glaiD~~~~~LYw~D~---------~~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~  228 (573)
                      -...  .     .-..|.   .+++++..++||++..         ..++|+.+|+....+ +.+..+   ..|.+|++.
T Consensus       263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg---~~~~~lavs  339 (386)
T 3sjl_D          263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVS  339 (386)
T ss_dssp             CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEEC
T ss_pred             cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC---CCcceEEEC
Confidence            2000  0     001233   4889999999999853         125799999876554 333333   267788883


Q ss_pred             --CC-eEEEecCCCCceEEEeccCCcceEEEcccCCCceeeee
Q psy952          229 --ED-HIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       229 --~~-~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v  268 (573)
                        +. .||.+++..+.|..++..+++.+..+... .+|..|.+
T Consensus       340 ~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~  381 (386)
T 3sjl_D          340 QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-GHGPQVIT  381 (386)
T ss_dssp             SSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-CSSCCEEE
T ss_pred             CCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-CCCceeEE
Confidence              33 68999999999999999999887777653 46666654

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.96  E-value=3.8e-10  Score=76.83  Aligned_cols=38  Identities=53%  Similarity=1.127  Sum_probs=33.7

Q ss_pred             CCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCCCcc
Q psy952          409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMC  447 (573)
Q Consensus       409 ~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~~~C  447 (573)
                      .|.++ +|+|.+|+|||..|+|||..||.|+|||....|
T Consensus         5 ~C~~~-~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c~C   42 (45)
T 1d2l_A            5 QCQPG-EFACANSRCIQERWKCDGDNDCLDNSDEAPALC   42 (45)
T ss_dssp             BTTBT-CEEETTTEEECGGGTTTSSCTTTTCSTTSTTTC
T ss_pred             cCCCC-ceEcCCCCeEehhhccCCCCCCCCCCCCCCCcC
Confidence            56667 999999999999999999999999999987433

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.94  E-value=2.2e-07  Score=100.64  Aligned_cols=214  Identities=14%  Similarity=0.072  Sum_probs=144.8

Q ss_pred             EEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC---CCceeEeccC
Q psy952           52 FHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD---GTNRKTLKTA  128 (573)
Q Consensus        52 ~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld---g~~~~~l~~~  128 (573)
                      +|+ .+.+|++....+.|..++++.......+..+ ..|.++++++.++.||+++. .+.|.++++.   +.....+ ..
T Consensus       163 ~d~-~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~-dg~V~viD~~~~t~~~v~~i-~~  238 (567)
T 1qks_A          163 WDL-ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEI-KI  238 (567)
T ss_dssp             CCG-GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEE-EC
T ss_pred             cCC-CceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcC-CCeEEEEECCCCCCcEeEEE-ec
Confidence            453 6789999999999999999865544334444 47899999999999999974 6789999994   3222222 23


Q ss_pred             CCCcceEEEe----CCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC----------CCCCceEEEeccCCeEEEEe
Q psy952          129 IQDPRGITLH----PGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD----------IAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       129 ~~~P~~Iavd----p~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~----------l~~P~glaiD~~~~~LYw~D  194 (573)
                      ...|++|+++    |..++||+++.. .+.|..++.........+. ...          -..+.+|...+.+..+|++-
T Consensus       239 G~~P~~ia~s~~~~pDGk~l~v~n~~-~~~v~ViD~~t~~~~~~i~-~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~  316 (567)
T 1qks_A          239 GSEARSIETSKMEGWEDKYAIAGAYW-PPQYVIMDGETLEPKKIQS-TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  316 (567)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEE-TTEEEEEETTTCCEEEEEE-CCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             CCCCceeEEccccCCCCCEEEEEEcc-CCeEEEEECCCCcEEEEEe-ccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence            4569999999    688899999854 5667777644333222221 111          01335777777777888888


Q ss_pred             CCCCeEEEEeCCCCcEEEEE--eCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcc--cCCCc-eeeeee
Q psy952          195 AHLDYIASVDLDGKHKHIVI--SGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRN--TTHRP-YDIHVY  269 (573)
Q Consensus       195 ~~~~~I~~~~~dG~~~~~l~--~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~--~~~~p-~~i~v~  269 (573)
                      ...++|..+++.......+.  ......+..++.-.+.++|++...+++|..++..+++....+..  ...+| .++.++
T Consensus       317 ~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~  396 (567)
T 1qks_A          317 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFV  396 (567)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEE
T ss_pred             cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeE
Confidence            88899999998764322222  12113344444446778999999999999999888876665543  23344 366666


Q ss_pred             ec
Q psy952          270 HP  271 (573)
Q Consensus       270 ~~  271 (573)
                      +|
T Consensus       397 ~p  398 (567)
T 1qks_A          397 HP  398 (567)
T ss_dssp             ET
T ss_pred             CC
Confidence            66

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.93  E-value=1.6e-07  Score=96.95  Aligned_cols=219  Identities=12%  Similarity=0.067  Sum_probs=139.2

Q ss_pred             CCCEEEEEe--cccEEEEEcCC--Cceee--cc--------cCCcceEEEEEEcCCCEEEEEECCC------CeEEEEEc
Q psy952           15 IKPWLIFSN--KYYVRNMSLDA--TQYSL--VH--------QDLLNVVAMDFHYKENRFYFADVAA------KTIYRSRV   74 (573)
Q Consensus        15 ~~~~l~~s~--~~~I~~i~l~g--~~~~~--~~--------~~~~~~~~v~~d~~~~~ly~~d~~~------~~I~~~~~   74 (573)
                      ...+|+++.  .+.|+.+++..  ...++  .+        .+...|..+..-+.+  ||++...+      +.|..++.
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEECT
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEEC
Confidence            356888876  47899999853  22222  22        145578888888654  99987655      68998887


Q ss_pred             CCCcceEEEcCCCCCcceeEE----eecCCcEEEEeC------------------CCCeEEEEEcCCCcee-Eecc--CC
Q psy952           75 GSTEKERVIRHDSHGLEGLAV----DWVGRKLYWLDR------------------HSKQLDVAELDGTNRK-TLKT--AI  129 (573)
Q Consensus        75 ~g~~~~~i~~~~~~~p~glav----D~~~~~LY~td~------------------~~~~I~~~~ldg~~~~-~l~~--~~  129 (573)
                      ++......+..+ ..|.++++    .+..+.+|.++.                  ..++|.+.+++..... ++--  ..
T Consensus       172 ~T~~v~~~~~~~-~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          172 YSFEPLGKWEID-RGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTCCEEEECCSB-CTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCeEEEEEccC-CCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            754433223222 24555554    445677777763                  3689999999864322 2221  22


Q ss_pred             CCcceEEE--eCCCceEEEEec----CCcCeEEEEeccCCCc---EEE-Eec---CCC-----------CCCCceEEEec
Q psy952          130 QDPRGITL--HPGIGYVYFSSW----NLQAYIGKIGMDGSNF---TRI-LTH---EDD-----------IAWPNALTLDY  185 (573)
Q Consensus       130 ~~P~~Iav--dp~~g~LYwtd~----~~~~~I~r~~ldG~~~---~~l-~~~---~~~-----------l~~P~glaiD~  185 (573)
                      ..|+.|++  +|...++|++..    ...+.|.+...++...   +++ +..   ...           -..|.+|.|.+
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            45999977  999999999884    0245676666554211   111 100   001           14589999999


Q ss_pred             cCCeEEEEeCCCCeEEEEeCC-CCcEEEEE---eCCcc------------ceeEEEee--eCCeEEEec
Q psy952          186 FTERLYWADAHLDYIASVDLD-GKHKHIVI---SGQKV------------PHVFALTL--FEDHIYWTD  236 (573)
Q Consensus       186 ~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~---~~~~~------------~~p~~ia~--~~~~lywtd  236 (573)
                      ++++||++.++.+.|..++.+ ....+++.   .++.+            ..|.+|++  ++.+||+|+
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999999999999999974 33333332   23111            15877777  577999999

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.93  E-value=2.3e-08  Score=104.04  Aligned_cols=211  Identities=14%  Similarity=0.096  Sum_probs=128.7

Q ss_pred             cCCCEEEEEECCC----CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC---------CCCeEEEEEcCCC
Q psy952           54 YKENRFYFADVAA----KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR---------HSKQLDVAELDGT  120 (573)
Q Consensus        54 ~~~~~ly~~d~~~----~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~---------~~~~I~~~~ldg~  120 (573)
                      +..++||+++...    +.|.++++........+..+ ..| +|++++.++.||+++.         ..+.|.++|+...
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG-~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG-FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC-CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            3467899999865    79999998765544444445 478 9999999999999985         3567999998654


Q ss_pred             ce-eEec-c------CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC--CCCCce----E-----
Q psy952          121 NR-KTLK-T------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD--IAWPNA----L-----  181 (573)
Q Consensus       121 ~~-~~l~-~------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~--l~~P~g----l-----  181 (573)
                      .. ..+. .      ....|++|+++|..++||+++......|.++++.......-+. ...  ...|.|    +     
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~-v~g~~~~~p~g~~~~v~~~~d  238 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD-VPDCYHIFPASPTVFYMNCRD  238 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEETT
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE-cCCceeeccCCCcEEEEEcCC
Confidence            43 3332 2      1357999999999999999986434567666665332211110 000  001111    2     


Q ss_pred             --------------------------------EEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-----Cc---cce
Q psy952          182 --------------------------------TLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-----QK---VPH  221 (573)
Q Consensus       182 --------------------------------aiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-----~~---~~~  221 (573)
                                                      ++.+..+++||+.. .++|+.++..+....++..-     ..   -..
T Consensus       239 G~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~-~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~  317 (426)
T 3c75_H          239 GSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY-TGKIFQADLTAEGATFRAPIEALTEAERADDWR  317 (426)
T ss_dssp             SSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT-TSEEEEEEECSSCEEECCCEESSCTTTGGGTEE
T ss_pred             CCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC-CCcEEEEeccCCceEEeeeeeeccccccccccc
Confidence                                            22434445555432 35566666655443332110     00   012


Q ss_pred             e-----EEEeeeCCeEEEecCC---------CCceEEEeccCCcceEEEcccCCCceeeeee
Q psy952          222 V-----FALTLFEDHIYWTDWN---------TKSINRADKFNGRDYRVLRNTTHRPYDIHVY  269 (573)
Q Consensus       222 p-----~~ia~~~~~lywtd~~---------~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~  269 (573)
                      |     .++.-.+++||+++..         .+.|..++..+.+.+..|..+. .|.+|.+-
T Consensus       318 p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~s  378 (426)
T 3c75_H          318 PGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVS  378 (426)
T ss_dssp             ECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEEC
T ss_pred             cCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEc
Confidence            3     3444467899998642         3579999988888777665432 57777654

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.92  E-value=2.6e-10  Score=103.39  Aligned_cols=50  Identities=30%  Similarity=0.745  Sum_probs=44.4

Q ss_pred             CCcCCCceeeC--CCCceecCCcCcCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q psy952          523 ITCPPHHLKCA--NTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR-TCPQNSFR  573 (573)
Q Consensus       523 ~~C~~~~f~C~--~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~~-~c~~~~f~  573 (573)
                      ..|.+.+|+|.  ++ .|||..|+|||.+||+|||||.+.+|... +|++.+|+
T Consensus        51 ~~C~~~eFqC~~~~g-~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~  103 (220)
T 2gtl_N           51 THCEKRTFQCGGNEQ-ECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFS  103 (220)
T ss_dssp             CSSCTTEEECCSSSC-CEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEE
T ss_pred             CCCCCCccCcCCCCC-cEeCcceecCCCCCCCCCCccCcccCCCCCccCCccee
Confidence            46788999995  45 99999999999999999999976689988 99998885

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=98.92  E-value=1.4e-07  Score=94.13  Aligned_cols=177  Identities=10%  Similarity=-0.073  Sum_probs=115.6

Q ss_pred             EEEEEECCCCeEEEEEcCCCcceEEEcCCCC--CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCC------
Q psy952           58 RFYFADVAAKTIYRSRVGSTEKERVIRHDSH--GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAI------  129 (573)
Q Consensus        58 ~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~--~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~------  129 (573)
                      .++++....+.|+.+++........+..+..  .|.++++++.++.||++....+.|.+.++........+...      
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            3556666667777777765433323322211  59999999988899999988889999998654433222211      


Q ss_pred             CCcceEEEeCCCceEEEEecC----------CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe
Q psy952          130 QDPRGITLHPGIGYVYFSSWN----------LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY  199 (573)
Q Consensus       130 ~~P~~Iavdp~~g~LYwtd~~----------~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~  199 (573)
                      ..|.+++++|...+||++..+          ....|.+.++........+   ..-..|.++++++.+.+||++   .+.
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~---~~~  155 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF---EAPRQITMLAWARDGSKLYGL---GRD  155 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE---ECCSSCCCEEECTTSSCEEEE---SSS
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEE---eCCCCcceeEECCCCCEEEEe---CCe
Confidence            269999999988899999521          2468888888765443333   223468999999988899999   367


Q ss_pred             EEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCC
Q psy952          200 IASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTK  240 (573)
Q Consensus       200 I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~  240 (573)
                      |..+++........+.......|..+...+..||++....+
T Consensus       156 i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  196 (337)
T 1pby_B          156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSG  196 (337)
T ss_dssp             EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTT
T ss_pred             EEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCC
Confidence            99999876654433332211234444445555655544433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.92  E-value=8.4e-08  Score=102.29  Aligned_cols=250  Identities=11%  Similarity=0.078  Sum_probs=159.6

Q ss_pred             CEEEEEe--cccEEEEEcCCCceee--cccCCcceEEEEE-E-cCCCEEEEEEC-----------------CCCeEEEEE
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSL--VHQDLLNVVAMDF-H-YKENRFYFADV-----------------AAKTIYRSR   73 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~--~~~~~~~~~~v~~-d-~~~~~ly~~d~-----------------~~~~I~~~~   73 (573)
                      .+|++.+  ..+|.+|+++..+...  .++....|.|+++ . +.+++||.+..                 ..+.+..++
T Consensus       102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID  181 (595)
T 1fwx_A          102 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD  181 (595)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEE
T ss_pred             CEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEE
Confidence            3666665  4679999999866433  3445567999998 4 78999999952                 234788888


Q ss_pred             cCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCC--------------CeE-----------------------EEEE
Q psy952           74 VGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHS--------------KQL-----------------------DVAE  116 (573)
Q Consensus        74 ~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~--------------~~I-----------------------~~~~  116 (573)
                      .+.......+..+ ..|+++++++.++.+|+|....              +.|                       .|++
T Consensus       182 ~~t~~v~~qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID  260 (595)
T 1fwx_A          182 ADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD  260 (595)
T ss_dssp             TTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred             CCCCeEEEEEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEe
Confidence            8754332222223 3899999999999999998654              223                       3344


Q ss_pred             cCCC--ce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC----------cEEEEecCCCCCCCceEEE
Q psy952          117 LDGT--NR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN----------FTRILTHEDDIAWPNALTL  183 (573)
Q Consensus       117 ldg~--~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~----------~~~l~~~~~~l~~P~glai  183 (573)
                      ....  .. ...+.....|.||+++|...++|+++.. .++|.+++++-..          ..++.. ...-..|.++++
T Consensus       261 ~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~-s~~VsVid~~~~~~~~~~~l~~~~~v~~~-v~vG~gP~h~aF  338 (595)
T 1fwx_A          261 GRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKL-SPTVTVLDVTRFDAVFYENADPRSAVVAE-PELGLGPLHTAF  338 (595)
T ss_dssp             CSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTT-SSBEEEEEGGGHHHHHHSCCCGGGGEEEC-CBCCSCEEEEEE
T ss_pred             CcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCC-CCeEEEEECcccccccccccCcccceEEE-cCCCCCcceEEE
Confidence            3321  01 1122333579999999999999999965 6778888876321          112221 334467999999


Q ss_pred             eccCCeEEEEeCCCCeEEEEeCCCC-------c-EEEEEeCCcccee------EEEee--eCCeEEEecCCC-Cce----
Q psy952          184 DYFTERLYWADAHLDYIASVDLDGK-------H-KHIVISGQKVPHV------FALTL--FEDHIYWTDWNT-KSI----  242 (573)
Q Consensus       184 D~~~~~LYw~D~~~~~I~~~~~dG~-------~-~~~l~~~~~~~~p------~~ia~--~~~~lywtd~~~-~~I----  242 (573)
                      ++++ ++|.+-.-.+.|...+++..       . .+++..-.--.+|      .|+++  ++.+||.++..+ .++    
T Consensus       339 ~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~g  417 (595)
T 1fwx_A          339 DGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVG  417 (595)
T ss_dssp             CTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCC
T ss_pred             CCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCC
Confidence            9877 99999999999999998751       1 2222221001233      33443  577899998877 666    


Q ss_pred             -------EEEeccCCcceEEEcc--cCCCceeeeeeec
Q psy952          243 -------NRADKFNGRDYRVLRN--TTHRPYDIHVYHP  271 (573)
Q Consensus       243 -------~~~~~~~g~~~~~l~~--~~~~p~~i~v~~~  271 (573)
                             ..++. +|...+++..  ....|.+..|.+.
T Consensus       418 p~~~~~~ql~di-s~~~m~lv~d~p~~~ePh~~~i~~~  454 (595)
T 1fwx_A          418 PLKPENDQLIDI-SGDKMVLVHDGPTFAEPHDAIAVHP  454 (595)
T ss_dssp             SSCCEEEEEEEC-SSSSCEEEEEEEESSCCCCEEEECT
T ss_pred             CCCCCcceEEEc-CCCcEEEEEEEcCCCCCCceEEccH
Confidence                   45554 4444444422  1446666666553

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.91  E-value=4.9e-07  Score=91.82  Aligned_cols=192  Identities=13%  Similarity=0.125  Sum_probs=136.2

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCC---------------CeEEEEEcCCC--cc-eEE-EcCC----CCCcceeEEeec-
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAA---------------KTIYRSRVGST--EK-ERV-IRHD----SHGLEGLAVDWV-   98 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~---------------~~I~~~~~~g~--~~-~~i-~~~~----~~~p~glavD~~-   98 (573)
                      .+..+.+|.+|. .++||+.|.+.               .+|..+++...  .. .++ +...    -.....|+||.. 
T Consensus        85 ~lvsV~~v~iD~-~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~  163 (381)
T 3q6k_A           85 ELTSIYQPVIDD-CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVAN  163 (381)
T ss_dssp             SSSCEEEEEECT-TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESC
T ss_pred             ceEEeeEEEEcC-CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEeccc
Confidence            477799999995 89999999752               26889999765  32 222 1111    135678999932 


Q ss_pred             ------CCcEEEEeCCCCeEEEEEcC-CCceeEec----cC--------------CCCcceEEEeCC----CceEEEEec
Q psy952           99 ------GRKLYWLDRHSKQLDVAELD-GTNRKTLK----TA--------------IQDPRGITLHPG----IGYVYFSSW  149 (573)
Q Consensus        99 ------~~~LY~td~~~~~I~~~~ld-g~~~~~l~----~~--------------~~~P~~Iavdp~----~g~LYwtd~  149 (573)
                            .+.+|+||.....|.|+++. |...+++.    ..              .....||||+|.    .++|||.-.
T Consensus       164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl  243 (381)
T 3q6k_A          164 PKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG  243 (381)
T ss_dssp             TTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred             CCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Confidence                  56899999999999999986 44445442    11              124679999998    789999985


Q ss_pred             CCcCeEEEEecc-------CCCcEEEEecCCC-CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC-----CcEEEEEeC
Q psy952          150 NLQAYIGKIGMD-------GSNFTRILTHEDD-IAWPNALTLDYFTERLYWADAHLDYIASVDLDG-----KHKHIVISG  216 (573)
Q Consensus       150 ~~~~~I~r~~ld-------G~~~~~l~~~~~~-l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG-----~~~~~l~~~  216 (573)
                      + ..+++++..+       ....+.+.  ... .....++++|..++.||+++...+.|.+.+.++     .+..+|+..
T Consensus       244 s-s~~ly~V~T~~L~~~~~~~~v~~~G--~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d  320 (381)
T 3q6k_A          244 S-AIKVYSVNTKELKQKGGKLNPELLG--NRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTS  320 (381)
T ss_dssp             S-CSEEEEEEHHHHSSTTCCCCCEEEE--ECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEEC
T ss_pred             C-CCcEEEEEHHHhhCcchhhceEEee--ecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEEC
Confidence            4 4567777631       22333343  221 223346888877899999999999999999988     456777775


Q ss_pred             CccceeEEEeee-CCeEEEecCC
Q psy952          217 QKVPHVFALTLF-EDHIYWTDWN  238 (573)
Q Consensus       217 ~~~~~p~~ia~~-~~~lywtd~~  238 (573)
                      .++..|.+|++. +++||++...
T Consensus       321 ~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          321 SRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             TTCCSEEEEEECTTSCEEEEECS
T ss_pred             CCccccCeEEECCCCeEEEEECc
Confidence            568999999995 6789887644

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.90  E-value=5e-07  Score=88.65  Aligned_cols=217  Identities=9%  Similarity=0.022  Sum_probs=146.4

Q ss_pred             cccEEEEEc-CCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCc
Q psy952           24 KYYVRNMSL-DATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK  101 (573)
Q Consensus        24 ~~~I~~i~l-~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~  101 (573)
                      .+.|+.++. +|...- +.......+..+++.+. ++||++  ..+.|+.++.+|.....+-...-..+.++++.+ .++
T Consensus        14 ~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pd-G~ilvs--~~~~V~~~d~~G~~~W~~~~~~~~~~~~~~~~~-dG~   89 (276)
T 3no2_A           14 WNKIAIINKDTKEIVWEYPLEKGWECNSVAATKA-GEILFS--YSKGAKMITRDGRELWNIAAPAGCEMQTARILP-DGN   89 (276)
T ss_dssp             CSEEEEEETTTTEEEEEEECCTTCCCCEEEECTT-SCEEEE--CBSEEEEECTTSCEEEEEECCTTCEEEEEEECT-TSC
T ss_pred             CCEEEEEECCCCeEEEEeCCCccCCCcCeEECCC-CCEEEe--CCCCEEEECCCCCEEEEEcCCCCccccccEECC-CCC
Confidence            578888998 454332 22222135778888874 556664  356788888876544433322112345566654 677


Q ss_pred             EEEEeCC-CCeEEEEEcCCCceeEec--cC----CCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC
Q psy952          102 LYWLDRH-SKQLDVAELDGTNRKTLK--TA----IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD  174 (573)
Q Consensus       102 LY~td~~-~~~I~~~~ldg~~~~~l~--~~----~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~  174 (573)
                      +++++.. .++|..++.+|+....+.  ..    ...|+++++++ +|.+++++.. ..+|...+.+|...-.+-  .. 
T Consensus        90 ~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~-~~~v~~~d~~G~~~w~~~--~~-  164 (276)
T 3no2_A           90 ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFA-TSEVREIAPNGQLLNSVK--LS-  164 (276)
T ss_dssp             EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETT-TTEEEEECTTSCEEEEEE--CS-
T ss_pred             EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECC-CCCEEEEecC-CCEEEEECCCCCEEEEEE--CC-
Confidence            8888876 788999999998765543  12    23588899988 5667777753 678999999976655544  22 


Q ss_pred             CCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeC----CccceeEEEee-eCCeEEEecCC----------
Q psy952          175 IAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISG----QKVPHVFALTL-FEDHIYWTDWN----------  238 (573)
Q Consensus       175 l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~----~~~~~p~~ia~-~~~~lywtd~~----------  238 (573)
                       ..|.++++. .++.+++++...++|..++.+ |..+..+...    ..+..|.++++ .++.||++++.          
T Consensus       165 -~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~  242 (276)
T 3no2_A          165 -GTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGK  242 (276)
T ss_dssp             -SCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSC
T ss_pred             -CCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccC
Confidence             468888887 577888998888899999999 8777666532    12567899997 47899999963          


Q ss_pred             CCceEEEeccCCcc
Q psy952          239 TKSINRADKFNGRD  252 (573)
Q Consensus       239 ~~~I~~~~~~~g~~  252 (573)
                      ..+++.+++ +|+.
T Consensus       243 ~~~~~~~~~-~g~~  255 (276)
T 3no2_A          243 HPQLVEIDS-EGKV  255 (276)
T ss_dssp             CCSEEEECT-TSBE
T ss_pred             CceEEEECC-CCCE
Confidence            335777763 5543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.89  E-value=2.8e-07  Score=94.22  Aligned_cols=239  Identities=10%  Similarity=-0.043  Sum_probs=143.5

Q ss_pred             CEEEEEec------ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEEC---------CCCeEEEEEcCCCcc-e
Q psy952           17 PWLIFSNK------YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV---------AAKTIYRSRVGSTEK-E   80 (573)
Q Consensus        17 ~~l~~s~~------~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~-~   80 (573)
                      ..||+++.      +.|.+|++........+.....|. |++++.+++||+++.         ..+.|.++++..... .
T Consensus        45 ~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~  123 (386)
T 3sjl_D           45 RRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTA  123 (386)
T ss_dssp             TEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEE
T ss_pred             CEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEE
Confidence            46666764      479999988765543333344465 999999999999984         245788888876543 2


Q ss_pred             EEEcCC------CCCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCCcee-Eec-cC--CCCcce----EEEeCCCceEE
Q psy952           81 RVIRHD------SHGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGTNRK-TLK-TA--IQDPRG----ITLHPGIGYVY  145 (573)
Q Consensus        81 ~i~~~~------~~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~~~~-~l~-~~--~~~P~~----Iavdp~~g~LY  145 (573)
                      .|....      ...|.+|+|++.+++||+++.. .+.|.++++...... ++- .+  ...|.+    +++.+...++|
T Consensus       124 ~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~  203 (386)
T 3sjl_D          124 DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAK  203 (386)
T ss_dssp             EEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEE
T ss_pred             EEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEE
Confidence            232111      2479999999999999999964 689999998765433 331 11  112433    35566443333


Q ss_pred             EEecCCcCeEEEEeccCCCcEEEEecCCCCCCCc--eEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-------
Q psy952          146 FSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN--ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-------  216 (573)
Q Consensus       146 wtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~--glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-------  216 (573)
                      ++- ....++.....      .++   ..-..|.  ..+++..++++||... .++|+.+++.+...+++..-       
T Consensus       204 v~~-~~~g~v~~~~~------~~~---~~~~~~~~~~~~~~~~dG~~~~vs~-~g~V~v~d~~~~~~~v~~~~~~~~~~~  272 (386)
T 3sjl_D          204 VAF-GTEGTPEITHT------EVF---HPEDEFLINHPAYSQKAGRLVWPTY-TGKIHQIDLSSGDAKFLPAVEALTEAE  272 (386)
T ss_dssp             EEC-CSSSCCEEEEC------CCC---SCTTSCBCSCCEEETTTTEEEEEBT-TSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred             EEC-CCCCeEEEeec------cee---ccccccccccceeEcCCCcEEEEeC-CCEEEEEECCCCcceeecceecccccc
Confidence            332 32223211100      011   1111222  2466656778777544 57899999987765443210       


Q ss_pred             ---C---ccceeEEEeeeCCeEEEecC---------CCCceEEEeccCCcceEEEcccCCCceeeee
Q psy952          217 ---Q---KVPHVFALTLFEDHIYWTDW---------NTKSINRADKFNGRDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       217 ---~---~~~~p~~ia~~~~~lywtd~---------~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v  268 (573)
                         .   .-..+.++.-.+++||++..         ..++|..++..+++.+..+..+. .|.+|++
T Consensus       273 ~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lav  338 (386)
T 3sjl_D          273 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINV  338 (386)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEE
T ss_pred             ccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEE
Confidence               0   01234566556889999853         13579999988888777665432 4556655

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.88  E-value=1e-09  Score=118.75  Aligned_cols=68  Identities=43%  Similarity=0.852  Sum_probs=62.6

Q ss_pred             ceecCCCcccCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCCCccccCCccccCCCCCCCCCCCCCCCCC
Q psy952          415 EFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC  491 (573)
Q Consensus       415 ~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d~sDe~~~~C  491 (573)
                      +|.|.+|.||+..|+|||..||.|+|||..  |..  |...+|+|.   ++.|++..++|||..||.||+||  .+|
T Consensus       208 ~~~C~~~~ci~~~~~Cdg~~dC~d~sDE~~--C~~--c~~~~~~C~---~~~C~~~~~~cdG~~dC~~gsDE--~~C  275 (565)
T 2xrc_A          208 FFQCVNGKYISQMKACDGINDCGDQSDELC--CKA--CQGKGFHCK---SGVCIPSQYQCNGEVDCITGEDE--VGC  275 (565)
T ss_dssp             -CBCTTSCBCCTTSTTSSSCCSSSSSSSSS--BSS--CSSSCEEET---TTEEECGGGTTSSSCCSSSCTTS--SSC
T ss_pred             eeECCCCCccCHHHcCCCcccCCCCccccc--ccc--cCCCceecC---CCcccCccccCCCcccCCCCccc--cCc
Confidence            699999999999999999999999999987  753  888999998   67899999999999999999999  677

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.85  E-value=8.8e-07  Score=86.05  Aligned_cols=222  Identities=10%  Similarity=0.044  Sum_probs=148.5

Q ss_pred             cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC-CcceEEEcCC-CCCcceeEEeecCCc
Q psy952           24 KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS-TEKERVIRHD-SHGLEGLAVDWVGRK  101 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~i~~~~-~~~p~glavD~~~~~  101 (573)
                      ...|+.+++.+.....+......+.+++|.+.+..|+++.  .+.|+.+++++ .....+.... ...+..+++.+.++.
T Consensus        21 ~~~i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~   98 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS--EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL   98 (297)
T ss_dssp             CEEEEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE--TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred             ceeEEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc--CCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence            3578888888766555544455688999999888888875  56899999987 6555443222 246778999988888


Q ss_pred             EEEEeCC---CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCC
Q psy952          102 LYWLDRH---SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAW  177 (573)
Q Consensus       102 LY~td~~---~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~  177 (573)
                      |+++...   ...|+.+++.+...+.+.. ...+..+++.|...+|+++... ....|+.+++++.....+.   ..-..
T Consensus        99 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~  174 (297)
T 2ojh_A           99 YAISDKVEFGKSAIYLLPSTGGTPRLMTK-NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLT---HGEGR  174 (297)
T ss_dssp             EEEEECTTTSSCEEEEEETTCCCCEECCS-SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECC---CSSSC
T ss_pred             EEEEEeCCCCcceEEEEECCCCceEEeec-CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcc---cCCCc
Confidence            8888732   5688888887766554443 2347888999988888866532 2346777777766554443   33345


Q ss_pred             CceEEEeccCCeEEEEeC--CCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCC----------CCceE
Q psy952          178 PNALTLDYFTERLYWADA--HLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWN----------TKSIN  243 (573)
Q Consensus       178 P~glaiD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~----------~~~I~  243 (573)
                      +..+++++.+..|+++..  +...|+.++.++...+.+...  ......+++  .+.+|+++...          ...|+
T Consensus       175 ~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          175 NDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDS--AYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCC--SEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             cccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecC--CcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence            678999988888888753  445788888777666554432  224455555  34556665432          24577


Q ss_pred             EEeccCCcce
Q psy952          244 RADKFNGRDY  253 (573)
Q Consensus       244 ~~~~~~g~~~  253 (573)
                      ..+..+++..
T Consensus       253 ~~d~~~~~~~  262 (297)
T 2ojh_A          253 LMDMDGGNVE  262 (297)
T ss_dssp             EEETTSCSCE
T ss_pred             EEecCCCCce
Confidence            7776555543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.83  E-value=3.8e-07  Score=91.14  Aligned_cols=187  Identities=16%  Similarity=0.099  Sum_probs=123.1

Q ss_pred             EEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCC-------EEEEEECC--CCeEEEEEcCC--CcceEE--
Q psy952           18 WLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKEN-------RFYFADVA--AKTIYRSRVGS--TEKERV--   82 (573)
Q Consensus        18 ~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~-------~ly~~d~~--~~~I~~~~~~g--~~~~~i--   82 (573)
                      .++++.  ...|..++|+|.....+.  .+.+.+|++-+.-.       .+|.++..  .++|..+.++.  .....+  
T Consensus        41 s~ii~t~k~~gL~Vydl~G~~l~~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSLDGKMLHSYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             CEEEEEETTTEEEEEETTSCEEEEEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             cEEEEEcCCCCEEEEcCCCcEEEEcc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            344443  468999999888765542  24556665544211       56889988  88888877653  223323  


Q ss_pred             ----EcCCCCCcceeEE--eecCCc--EEEEeCCCCeEEEEEc----CCCceeEec---cCCCCcceEEEeCCCceEEEE
Q psy952           83 ----IRHDSHGLEGLAV--DWVGRK--LYWLDRHSKQLDVAEL----DGTNRKTLK---TAIQDPRGITLHPGIGYVYFS  147 (573)
Q Consensus        83 ----~~~~~~~p~glav--D~~~~~--LY~td~~~~~I~~~~l----dg~~~~~l~---~~~~~P~~Iavdp~~g~LYwt  147 (573)
                          +...+..|.||++  +..++.  +|+++.. ++++.+.+    +|.....++   .....|.++++|+..++||++
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv~  197 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYIA  197 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEEe
Confidence                1244579999999  776664  7777765 78877655    232322333   233579999999999999999


Q ss_pred             ecCCcCeEEEEeccCC--C-cEEEEe-cCCCCC-CCceEEEeccC---CeEEEEeCCCCeEEEEeCCCCc
Q psy952          148 SWNLQAYIGKIGMDGS--N-FTRILT-HEDDIA-WPNALTLDYFT---ERLYWADAHLDYIASVDLDGKH  209 (573)
Q Consensus       148 d~~~~~~I~r~~ldG~--~-~~~l~~-~~~~l~-~P~glaiD~~~---~~LYw~D~~~~~I~~~~~dG~~  209 (573)
                      +..  ..|++++.+..  . .+.+.. ....+. .|.||+|.+..   ++|++++.+.+....++..+..
T Consensus       198 eEd--~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~  265 (355)
T 3amr_A          198 EED--EAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKN  265 (355)
T ss_dssp             ETT--TEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             ccc--ceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCC
Confidence            964  45999996532  2 333321 123444 78999997443   5899999999988888886543

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=98.83  E-value=1.4e-09  Score=70.94  Aligned_cols=34  Identities=47%  Similarity=0.969  Sum_probs=31.5

Q ss_pred             CCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          410 CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       410 C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      |..+ +|+|.+|.||+..|+|||..||.|+|||..
T Consensus         2 C~~~-~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~   35 (37)
T 1ajj_A            2 CSAF-EFHCLSGECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCTT-CEECTTSCEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCC-ceEcCCCCeechhhccCCCCCCCCCccccC
Confidence            5566 999999999999999999999999999975

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=98.83  E-value=6.8e-07  Score=89.64  Aligned_cols=152  Identities=11%  Similarity=0.022  Sum_probs=104.3

Q ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc
Q psy952           49 AMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT  127 (573)
Q Consensus        49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~  127 (573)
                      |+++. .++++|++....+.|+++++.+......+..+ ...|.++++++.++.||++....+.|.+.++.+......+.
T Consensus         4 g~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            45555 47789999988899999998765433333322 22699999998888899999888999999997554333222


Q ss_pred             --C-----CCCcceEEEeCCCceEEEEecC----------CcCeEEEEeccCCC----cEEEEecCCCCCCCceEEEecc
Q psy952          128 --A-----IQDPRGITLHPGIGYVYFSSWN----------LQAYIGKIGMDGSN----FTRILTHEDDIAWPNALTLDYF  186 (573)
Q Consensus       128 --~-----~~~P~~Iavdp~~g~LYwtd~~----------~~~~I~r~~ldG~~----~~~l~~~~~~l~~P~glaiD~~  186 (573)
                        .     ...|.+++++|...+||++...          ....|...++....    ...+.    .-..+.++++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~s~d  158 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP----MPRQVYLMRAADD  158 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE----CCSSCCCEEECTT
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc----CCCcccceeECCC
Confidence              1     2348999999988899998732          13578888876421    12222    1225778889976


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCc
Q psy952          187 TERLYWADAHLDYIASVDLDGKH  209 (573)
Q Consensus       187 ~~~LYw~D~~~~~I~~~~~dG~~  209 (573)
                      +. ||++.   +.|..+++....
T Consensus       159 g~-l~~~~---~~i~~~d~~~~~  177 (349)
T 1jmx_B          159 GS-LYVAG---PDIYKMDVKTGK  177 (349)
T ss_dssp             SC-EEEES---SSEEEECTTTCC
T ss_pred             Cc-EEEcc---CcEEEEeCCCCc
Confidence            66 88864   338888875443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.79  E-value=6.2e-07  Score=87.15  Aligned_cols=201  Identities=13%  Similarity=0.119  Sum_probs=137.3

Q ss_pred             eeeCCCCCCEEEEEecccEEEEEcCC-CceeecccCC--cceEEEEEEcCCCEEEEEECC---CCeEEEEEcCCCcceEE
Q psy952            9 CKRRDSIKPWLIFSNKYYVRNMSLDA-TQYSLVHQDL--LNVVAMDFHYKENRFYFADVA---AKTIYRSRVGSTEKERV   82 (573)
Q Consensus         9 C~~~~~~~~~l~~s~~~~I~~i~l~g-~~~~~~~~~~--~~~~~v~~d~~~~~ly~~d~~---~~~I~~~~~~g~~~~~i   82 (573)
                      +.+......+|+++....|+.+++.+ .....+....  ..+..++|.+.++.|+++...   ...|+.+++++.....+
T Consensus        46 ~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~  125 (297)
T 2ojh_A           46 APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM  125 (297)
T ss_dssp             EEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC
T ss_pred             eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe
Confidence            33333334577777788999999987 6655444332  456788999999999988743   46899999877665443


Q ss_pred             EcCCCCCcceeEEeecCCcEEEEeCCCC--eEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEe
Q psy952           83 IRHDSHGLEGLAVDWVGRKLYWLDRHSK--QLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIG  159 (573)
Q Consensus        83 ~~~~~~~p~glavD~~~~~LY~td~~~~--~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~  159 (573)
                      ...  ..+..+++.+.++.|+++....+  .|+.+++.+.....+......+..++++|...+|+++.. .....|+.++
T Consensus       126 ~~~--~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~  203 (297)
T 2ojh_A          126 TKN--LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR  203 (297)
T ss_dssp             CSS--SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             ecC--CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence            322  34777788877888887665445  566666776666555555566889999998888887753 3356788888


Q ss_pred             ccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC----------CCeEEEEeCCCCcEEEEE
Q psy952          160 MDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH----------LDYIASVDLDGKHKHIVI  214 (573)
Q Consensus       160 ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~----------~~~I~~~~~dG~~~~~l~  214 (573)
                      +++.....+.   ........+++++.+.+|+++...          ...|+..++++...+.+.
T Consensus       204 ~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~  265 (297)
T 2ojh_A          204 VDGSSVERIT---DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF  265 (297)
T ss_dssp             TTSSCEEECC---CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE
T ss_pred             CCCCCcEEEe---cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee
Confidence            7776655443   222344578888888888877543          256888898876654443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.78  E-value=9.9e-07  Score=92.82  Aligned_cols=224  Identities=11%  Similarity=0.082  Sum_probs=134.9

Q ss_pred             EEEEe-cccEEEEEcCCCce----ee----cccC-----CcceEEEEEEcC---CCEEEEEECC--C----------CeE
Q psy952           19 LIFSN-KYYVRNMSLDATQY----SL----VHQD-----LLNVVAMDFHYK---ENRFYFADVA--A----------KTI   69 (573)
Q Consensus        19 l~~s~-~~~I~~i~l~g~~~----~~----~~~~-----~~~~~~v~~d~~---~~~ly~~d~~--~----------~~I   69 (573)
                      |+++. ...|++++.++...    .-    +..+     ...+.+|++++.   ++.||++-..  .          .+|
T Consensus        29 l~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~~~~~~~~~v  108 (463)
T 2wg3_C           29 LFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAIGPHDHILRV  108 (463)
T ss_dssp             EEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCSSSSCEEEEE
T ss_pred             EEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCcccCCcccceEE
Confidence            45555 46788887665421    11    1111     345789999985   6889987542  1          378


Q ss_pred             EEEEcCCC--------cceEEEc----CCCCCcceeEEeecCCcEEEEeCC-----------------CCeEEEEEcCCC
Q psy952           70 YRSRVGST--------EKERVIR----HDSHGLEGLAVDWVGRKLYWLDRH-----------------SKQLDVAELDGT  120 (573)
Q Consensus        70 ~~~~~~g~--------~~~~i~~----~~~~~p~glavD~~~~~LY~td~~-----------------~~~I~~~~ldg~  120 (573)
                      .|+.+...        ..++|+.    ...+....|++++ .++||++-..                 .++|.|++++|.
T Consensus       109 ~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgp-DG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~  187 (463)
T 2wg3_C          109 VEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGP-DGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTD  187 (463)
T ss_dssp             EEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECT-TSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCC
T ss_pred             EEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECC-CCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCC
Confidence            88887531        2234432    2245667799997 5699998421                 468999999994


Q ss_pred             --------------------ceeEeccCCCCcceEEEeCCCc------eEEEEec-CC---cCeEEEEecc---CCCcEE
Q psy952          121 --------------------NRKTLKTAIQDPRGITLHPGIG------YVYFSSW-NL---QAYIGKIGMD---GSNFTR  167 (573)
Q Consensus       121 --------------------~~~~l~~~~~~P~~Iavdp~~g------~LYwtd~-~~---~~~I~r~~ld---G~~~~~  167 (573)
                                          ..++...++.+|.+|++||.++      +||.+|. +.   ...|.++...   |....+
T Consensus       188 ~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~i~~G~~yG~~~P~  267 (463)
T 2wg3_C          188 MCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQIIKGKDYESEPSL  267 (463)
T ss_dssp             CSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEEEC----CCSCCCC
T ss_pred             cccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEeeeccCCCCCCCCCe
Confidence                                2244557899999999999754      7888885 32   2345554221   111112


Q ss_pred             EEecCCCC--CCCceEEEec------cCCeEEEEeCCCCeEEEEeCCCCc---EEEEE-eC-------CccceeEEEeee
Q psy952          168 ILTHEDDI--AWPNALTLDY------FTERLYWADAHLDYIASVDLDGKH---KHIVI-SG-------QKVPHVFALTLF  228 (573)
Q Consensus       168 l~~~~~~l--~~P~glaiD~------~~~~LYw~D~~~~~I~~~~~dG~~---~~~l~-~~-------~~~~~p~~ia~~  228 (573)
                      +.  ...-  ..|.|+++-.      ..+.+|+++.. ++|.++.++...   ...++ .+       ....+|.+|++.
T Consensus       268 ~~--~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~-g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~~v~~~  344 (463)
T 2wg3_C          268 LE--FKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRN-GNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYFSGHILGFGED  344 (463)
T ss_dssp             EE--CCC----CEEEEEECCCSSCTTTTTCEEEEETT-SCEEEEEC-----CCEEEEECEEETTSSCSCCCSEEEEEEEC
T ss_pred             EE--eeCCCCccccceEEEeCCCChhhcceEEEecCC-CcEEEEEeCCCCceeeEEEeecCCcccccccccCcceEEEEC
Confidence            22  1111  4678888842      23568999987 789999886532   22222 11       114689999985


Q ss_pred             -CCeEEEecCC-------CCceEEEe
Q psy952          229 -EDHIYWTDWN-------TKSINRAD  246 (573)
Q Consensus       229 -~~~lywtd~~-------~~~I~~~~  246 (573)
                       ++.||++++.       .++|+|+.
T Consensus       345 pdG~Lyv~~~~~~~~~~~~G~I~Ri~  370 (463)
T 2wg3_C          345 ELGEVYILSSSKSMTQTHNGKLYKIV  370 (463)
T ss_dssp             TTCCEEEEEESSCGGGCSSEEEEEEE
T ss_pred             CCCCEEEEeccCCcccCCCCcEEEec
Confidence             5789999873       45566553

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=98.78  E-value=3.3e-09  Score=71.71  Aligned_cols=36  Identities=36%  Similarity=0.857  Sum_probs=32.6

Q ss_pred             CCCCCCCceecCC-CcccCCCcccCCCCCCCCCCCCCC
Q psy952          408 RPCDKDTEFACRN-GHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       408 ~~C~~~~~f~C~~-g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      ..|..+ +|+|.+ |+|||..|+|||..||.|+|||.+
T Consensus         5 ~~C~~~-~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~   41 (43)
T 2jm4_A            5 VKCSLG-YFPCGNITKCLPQLLHCNGVDDCGNQADEDN   41 (43)
T ss_dssp             CSCCTT-EEECSSSSCEEEGGGTTSSCCCSSSCCTTSS
T ss_pred             CCCCCC-eeECCCCCeEcCHhhccCCCCCCCCCcccCC
Confidence            456677 999999 899999999999999999999975

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.78  E-value=1e-09  Score=74.66  Aligned_cols=38  Identities=53%  Similarity=1.212  Sum_probs=33.5

Q ss_pred             CCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCCCcc
Q psy952          409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMC  447 (573)
Q Consensus       409 ~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~~~C  447 (573)
                      .|.++ +|+|.+|.|||..|+||+..||.|+|||....|
T Consensus         4 ~C~~~-~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C   41 (44)
T 1j8e_A            4 SCSST-QFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC   41 (44)
T ss_dssp             SSCTT-EEECTTSCEEEGGGTTSSSCCSSSSGGGSHHHH
T ss_pred             CCCCC-ceEeCCCCeEecCcccCCCCCCCCCCCCCCccc
Confidence            46677 999999999999999999999999999976333

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.78  E-value=1.1e-06  Score=86.23  Aligned_cols=192  Identities=9%  Similarity=0.012  Sum_probs=131.5

Q ss_pred             CEEEEEECCCCeEEEEEc-CCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccC-CCCcce
Q psy952           57 NRFYFADVAAKTIYRSRV-GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTA-IQDPRG  134 (573)
Q Consensus        57 ~~ly~~d~~~~~I~~~~~-~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~-~~~P~~  134 (573)
                      +++++++...+.|+.++. .|...-.+-......+.++++.+ .++||++  ..+.|..++++|..+..+... ...+.+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilvs--~~~~V~~~d~~G~~~W~~~~~~~~~~~~   81 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILFS--YSKGAKMITRDGRELWNIAAPAGCEMQT   81 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEEE--CBSEEEEECTTSCEEEEEECCTTCEEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEEe--CCCCEEEECCCCCEEEEEcCCCCccccc
Confidence            466666666667777776 33333222222213678888886 4567774  356799999988766555432 234567


Q ss_pred             EEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC----CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE
Q psy952          135 ITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD----IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK  210 (573)
Q Consensus       135 Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~----l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~  210 (573)
                      +++.+ +|.+++++.+...+|..++.+|.....+.. ...    ...|.++++++ ++.+++++...++|..++.+|...
T Consensus        82 ~~~~~-dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~-~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~G~~~  158 (276)
T 3no2_A           82 ARILP-DGNALVAWCGHPSTILEVNMKGEVLSKTEF-ETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPNGQLL  158 (276)
T ss_dssp             EEECT-TSCEEEEEESTTEEEEEECTTSCEEEEEEE-CCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTTSCEE
T ss_pred             cEECC-CCCEEEEecCCCCEEEEEeCCCCEEEEEec-cCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCCCCEE
Confidence            78887 677788875435688888888886555431 122    23577888874 667888999999999999997766


Q ss_pred             EEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          211 HIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       211 ~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      ..+...   ..|+++.+. ++.+++++...++|+.+++.+|+.+-.+.
T Consensus       159 w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          159 NSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             EEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             EEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            555433   357777764 67899999888899999988898776654

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=98.78  E-value=2.4e-09  Score=72.81  Aligned_cols=36  Identities=56%  Similarity=1.252  Sum_probs=31.9

Q ss_pred             CCCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       408 ~~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      ..|..+ +|+|.+|+|||..|+||+..||.|+|||..
T Consensus         6 ~~C~~~-~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~   41 (44)
T 3a7q_B            6 KECEKD-QFQCRNERCIPSVWRCDEDDDCLDHSDEDD   41 (44)
T ss_dssp             --CCTT-EEECTTSCEEEGGGTTSSSCCSSSSTTTSC
T ss_pred             CCCCCC-ceEcCCCCEeChhhccCCCCCCCCCccccC
Confidence            356677 999999999999999999999999999975

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=98.78  E-value=1.2e-09  Score=76.17  Aligned_cols=36  Identities=53%  Similarity=1.141  Sum_probs=33.0

Q ss_pred             CCCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       408 ~~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      ..|.++ +|+|.+|+|||..|+|||.+||.|+|||.+
T Consensus         5 ~~C~~~-~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~   40 (52)
T 2m0p_A            5 ASCLDT-QYTCDNHQCISKNWVCDTDNDCGDGSDEKN   40 (52)
T ss_dssp             CSSCSS-EEECTTCCEEETTSTTSSSCSSSSCHHHHS
T ss_pred             CCCCCC-ceECCCCCEEecCccCCCCCCCCCCCcccc
Confidence            357777 999999999999999999999999999975

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.77  E-value=2.9e-07  Score=94.01  Aligned_cols=206  Identities=11%  Similarity=-0.042  Sum_probs=126.4

Q ss_pred             CCEEEEEECCCC----eEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC---------CCCeEEEEEcCCCce
Q psy952           56 ENRFYFADVAAK----TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR---------HSKQLDVAELDGTNR  122 (573)
Q Consensus        56 ~~~ly~~d~~~~----~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~---------~~~~I~~~~ldg~~~  122 (573)
                      ..++|+++...+    .|..++++.......+..+ ..| ++++++.++.||+++.         ..+.|.++|+.....
T Consensus        31 ~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG-~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v  108 (368)
T 1mda_H           31 SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGA-FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP  108 (368)
T ss_dssp             TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC-TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE
T ss_pred             CCeEEEECCccCCccceEEEEECCCCeEEEEEeCC-CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE
Confidence            468999998776    7888888765443334445 468 9999999999999983         357899999875443


Q ss_pred             -eEeccC-------CCCcceEEEeCCCceEEEEecCCcCeEEE--EeccC-------------------------CCcEE
Q psy952          123 -KTLKTA-------IQDPRGITLHPGIGYVYFSSWNLQAYIGK--IGMDG-------------------------SNFTR  167 (573)
Q Consensus       123 -~~l~~~-------~~~P~~Iavdp~~g~LYwtd~~~~~~I~r--~~ldG-------------------------~~~~~  167 (573)
                       ..+.-+       ...|++|+++|..++||+++......|.+  +++..                         ..+..
T Consensus       109 v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~  188 (368)
T 1mda_H          109 IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLA  188 (368)
T ss_dssp             EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCE
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEE
Confidence             333211       35799999999999999998643344444  33311                         00011


Q ss_pred             EEecCC------CC-----------CCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCC--------cccee
Q psy952          168 ILTHED------DI-----------AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ--------KVPHV  222 (573)
Q Consensus       168 l~~~~~------~l-----------~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~--------~~~~p  222 (573)
                      ++....      .+           ..|.  + .+..+++||+..  +.|..++..+...+++..-.        ....|
T Consensus       189 ~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~--~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          189 ASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA--SSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             EEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS--SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             EEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC--CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence            111000      00           1122  2 445677788776  88888888765444332110        01234


Q ss_pred             EE-----EeeeCCeEEEecC---C-----CCceEEEeccCCcceEEEcccCCCceeeeee
Q psy952          223 FA-----LTLFEDHIYWTDW---N-----TKSINRADKFNGRDYRVLRNTTHRPYDIHVY  269 (573)
Q Consensus       223 ~~-----ia~~~~~lywtd~---~-----~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~  269 (573)
                      .+     ++-++++||++..   .     ...+..++..+++.+..|..+. .|.+|.+-
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s  322 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAA  322 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEEC
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEEC
Confidence            44     4446788999865   2     2456688877777665554332 56666654

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=98.77  E-value=5.4e-09  Score=69.04  Aligned_cols=34  Identities=41%  Similarity=0.971  Sum_probs=30.8

Q ss_pred             CCCCCceecCC--CcccCCCcccCCCCCCCCCCCCCC
Q psy952          410 CDKDTEFACRN--GHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       410 C~~~~~f~C~~--g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      |.+. +|+|.+  |+|||..|+|||..||.|+|||..
T Consensus         1 C~~~-~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~   36 (39)
T 3dpr_E            1 CRIH-EISCGAHSTQCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             CCTT-TCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTT
T ss_pred             CCCC-ceecCCCCCCEeCccccCCCcccCcCCccccc
Confidence            4456 899997  899999999999999999999975

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=98.76  E-value=5.4e-09  Score=70.27  Aligned_cols=35  Identities=57%  Similarity=1.186  Sum_probs=31.4

Q ss_pred             CCCCCCceecC-CCcccCCCcccCCCCCCCCCCCCCC
Q psy952          409 PCDKDTEFACR-NGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       409 ~C~~~~~f~C~-~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      .|..+ +|+|. +|.|||..|+|||..||.|+|||..
T Consensus         3 ~C~~~-~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~   38 (42)
T 1cr8_A            3 GCHTD-EFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS   38 (42)
T ss_dssp             CSSTT-CEECTTTCCEECGGGSSSSSCCSSSSTTTTT
T ss_pred             CCCCC-ceEeCCCCeEcChhhcCCCCcCCCCCCcccC
Confidence            46666 99998 4899999999999999999999975

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.74  E-value=5.2e-06  Score=85.12  Aligned_cols=202  Identities=8%  Similarity=-0.010  Sum_probs=122.1

Q ss_pred             CEEEEEe-----------cccEEEEEcCCCcee--eccc------CCcceEEEEEEcCCCEEEEEECC-CCeEEEEEcCC
Q psy952           17 PWLIFSN-----------KYYVRNMSLDATQYS--LVHQ------DLLNVVAMDFHYKENRFYFADVA-AKTIYRSRVGS   76 (573)
Q Consensus        17 ~~l~~s~-----------~~~I~~i~l~g~~~~--~~~~------~~~~~~~v~~d~~~~~ly~~d~~-~~~I~~~~~~g   76 (573)
                      .+|++++           .+.|.++++......  +.+.      ....|.++++++.+++||+++.. .+.|..++ .+
T Consensus        78 ~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t  156 (373)
T 2mad_H           78 SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QG  156 (373)
T ss_pred             CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CC
Confidence            4777775           246888888654332  2121      02458899999999999999875 67899998 65


Q ss_pred             CcceEE-EcCCCCCcceeEE------------------------------------------------eecCCcEEEEeC
Q psy952           77 TEKERV-IRHDSHGLEGLAV------------------------------------------------DWVGRKLYWLDR  107 (573)
Q Consensus        77 ~~~~~i-~~~~~~~p~glav------------------------------------------------D~~~~~LY~td~  107 (573)
                      ...... +..    |..+.+                                                ...++.+||.. 
T Consensus       157 ~~~~~~~i~~----~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-  231 (373)
T 2mad_H          157 GSSDDQLLSS----PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-  231 (373)
T ss_pred             CCEEeEEcCC----CceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEc-
Confidence            433212 211    111111                                                22223344443 


Q ss_pred             CCCeEEEEEcCCCceeEec-----c-----CCCCcce---EEEeCCCceEEEEecC--------CcCeEEEEeccCCCcE
Q psy952          108 HSKQLDVAELDGTNRKTLK-----T-----AIQDPRG---ITLHPGIGYVYFSSWN--------LQAYIGKIGMDGSNFT  166 (573)
Q Consensus       108 ~~~~I~~~~ldg~~~~~l~-----~-----~~~~P~~---Iavdp~~g~LYwtd~~--------~~~~I~r~~ldG~~~~  166 (573)
                      ..+.|.++++.+...+++.     .     ....|.+   ++++|..+.||++...        ....|.++++......
T Consensus       232 ~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv  311 (373)
T 2mad_H          232 YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence            2345666666543322211     0     1113555   8999999999998632        1347888888654432


Q ss_pred             EEEecCCCCCCCceEEEeccCC-eEEEEeCCCCeEEEEeCCCCcEEEE-EeCCccceeEEEeeeC
Q psy952          167 RILTHEDDIAWPNALTLDYFTE-RLYWADAHLDYIASVDLDGKHKHIV-ISGQKVPHVFALTLFE  229 (573)
Q Consensus       167 ~l~~~~~~l~~P~glaiD~~~~-~LYw~D~~~~~I~~~~~dG~~~~~l-~~~~~~~~p~~ia~~~  229 (573)
                      .-+   ..-..|.+|+++++++ +||.+....+.|..++......... ..-  -..|.+|.+++
T Consensus       312 ~~i---~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~v--G~~P~~~~~~~  371 (373)
T 2mad_H          312 SQI---SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVEL--GSGPQVLSVMN  371 (373)
T ss_pred             EEE---ECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCC--CCCCcEEEEcc
Confidence            222   1223699999999888 7888887889999999976554333 321  24688887654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.73  E-value=2.6e-06  Score=88.70  Aligned_cols=194  Identities=12%  Similarity=0.040  Sum_probs=137.2

Q ss_pred             CEEEEEec----ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           17 PWLIFSNK----YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        17 ~~l~~s~~----~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      .+|+++..    ..|+.+++.+.....+......+.+++|.+.+++|+++...  ...|+.+++.+.....+.. ....+
T Consensus       191 ~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~-~~~~~  269 (415)
T 2hqs_A          191 SKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNN  269 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCC-CSSCE
T ss_pred             CEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcC-CCCcc
Confidence            35555543    37889999766655444444567899999988889987654  3469999998765544333 23467


Q ss_pred             ceeEEeecCCcEEEEeCCC--CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEE
Q psy952           91 EGLAVDWVGRKLYWLDRHS--KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTR  167 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~--~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~  167 (573)
                      ..+++.+.++.|+++....  .+|+++++++...+.+.........++++|...+|+++.... ...|...++++...+.
T Consensus       270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~  349 (415)
T 2hqs_A          270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV  349 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE
T ss_pred             cceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE
Confidence            7888888888888876433  379999998776555544444577899999888898886432 3589999998776554


Q ss_pred             EEecCCCCCCCceEEEeccCCeEEEEeCCCC--eEEEEeCCCCcEEEEEe
Q psy952          168 ILTHEDDIAWPNALTLDYFTERLYWADAHLD--YIASVDLDGKHKHIVIS  215 (573)
Q Consensus       168 l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~l~~  215 (573)
                      +.   .. .....+++.+.+..|+++....+  .|+.++++|...+.|..
T Consensus       350 l~---~~-~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~  395 (415)
T 2hqs_A          350 LS---ST-FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPA  395 (415)
T ss_dssp             CC---CS-SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCC
T ss_pred             ec---CC-CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeC
Confidence            43   22 26788999988888888765444  79999999887766543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.73  E-value=4.2e-07  Score=96.94  Aligned_cols=194  Identities=9%  Similarity=0.068  Sum_probs=131.0

Q ss_pred             CCCEEEEEECCCCeEEEEEcCCCcceEEEcC-CCCCcceeEE-e-ecCCcEEEEe-----------------CCCCeEEE
Q psy952           55 KENRFYFADVAAKTIYRSRVGSTEKERVIRH-DSHGLEGLAV-D-WVGRKLYWLD-----------------RHSKQLDV  114 (573)
Q Consensus        55 ~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-~~~~p~glav-D-~~~~~LY~td-----------------~~~~~I~~  114 (573)
                      .+++||+.|..+.+|.|++++......++.. ....|.|+++ . +.+++||.+.                 ...+.|.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            4789999999999999999997655444433 2368999998 4 7899999994                 22357888


Q ss_pred             EEcCCCceeE-eccCCCCcceEEEeCCCceEEEEecCCc-------------CeEEEEec--------cCCC----cEEE
Q psy952          115 AELDGTNRKT-LKTAIQDPRGITLHPGIGYVYFSSWNLQ-------------AYIGKIGM--------DGSN----FTRI  168 (573)
Q Consensus       115 ~~ldg~~~~~-l~~~~~~P~~Iavdp~~g~LYwtd~~~~-------------~~I~r~~l--------dG~~----~~~l  168 (573)
                      ++.+...+.. +.-+. +|.+++++|..+++|+|.....             ..|.+.+.        +|..    ...+
T Consensus       180 ID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            8887543322 22233 8999999999999999985431             11221111        1110    0111


Q ss_pred             EecC-----------CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc----------EEEEEeCCccceeEEEee
Q psy952          169 LTHE-----------DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH----------KHIVISGQKVPHVFALTL  227 (573)
Q Consensus       169 ~~~~-----------~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~----------~~~l~~~~~~~~p~~ia~  227 (573)
                      +...           ..-..|.|+.+.+++.+||+++...++|..++++...          ..++..-..-..|..+++
T Consensus       259 ID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF  338 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF  338 (595)
T ss_dssp             EECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEE
T ss_pred             EeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEE
Confidence            1100           1124799999999999999999999999999988431          012222110247999999


Q ss_pred             e-CCeEEEecCCCCceEEEeccC
Q psy952          228 F-EDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       228 ~-~~~lywtd~~~~~I~~~~~~~  249 (573)
                      . ++++|.+.+-.+.|...+...
T Consensus       339 ~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          339 DGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCCCeEEEEEecCCcEEEEEhhH
Confidence            5 358999999999998887433

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.70  E-value=4e-09  Score=73.18  Aligned_cols=38  Identities=37%  Similarity=0.770  Sum_probs=34.2

Q ss_pred             CCCCCCCCCCceecCCC-cccCCCcccCCCCCCCCCCCCCC
Q psy952          405 CHNRPCDKDTEFACRNG-HCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       405 C~~~~C~~~~~f~C~~g-~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      |+ ..|.++ +|+|.+| +||+..|+||+..||.|+|||..
T Consensus         3 C~-~~C~~~-~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~   41 (48)
T 2i1p_A            3 MV-LNCTSA-QFKCADGSSCINSRYRCDGVYDCRDNSDEAG   41 (48)
T ss_dssp             SC-CCCCSS-SEECSSSSCEECGGGSSSSSCCSSSSHHHHS
T ss_pred             CC-CCCCCC-eeECCCCCEeCCHhhcCCCCCCCCCCccccc
Confidence            54 567777 9999999 89999999999999999999975

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.69  E-value=1.5e-06  Score=89.74  Aligned_cols=195  Identities=10%  Similarity=0.010  Sum_probs=130.0

Q ss_pred             cCCCEEEEEECCCCeEEEEEcCCC----cceEEE-------cCCCCCcceeEEeecCCcEEEEeCCC------CeEEEEE
Q psy952           54 YKENRFYFADVAAKTIYRSRVGST----EKERVI-------RHDSHGLEGLAVDWVGRKLYWLDRHS------KQLDVAE  116 (573)
Q Consensus        54 ~~~~~ly~~d~~~~~I~~~~~~g~----~~~~i~-------~~~~~~p~glavD~~~~~LY~td~~~------~~I~~~~  116 (573)
                      ..+++||+....+++|+.+++...    ....++       ..+...|.+++.-+.+  ||++..+.      +.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            678999999999999999998643    122223       2245688888888654  99987554      7899999


Q ss_pred             cCCCce-eEeccC-C--CCcceEEEeCCCceEEEEecC-----------------CcCeEEEEeccCCCcEEEEecCCCC
Q psy952          117 LDGTNR-KTLKTA-I--QDPRGITLHPGIGYVYFSSWN-----------------LQAYIGKIGMDGSNFTRILTHEDDI  175 (573)
Q Consensus       117 ldg~~~-~~l~~~-~--~~P~~Iavdp~~g~LYwtd~~-----------------~~~~I~r~~ldG~~~~~l~~~~~~l  175 (573)
                      ..+... ..+..+ .  ..+.++.+.|..+.||.++|+                 ...+|...+++.......+.....-
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            875443 333311 1  235668889999999999985                 2468888888754222222101112


Q ss_pred             CCCceEEE--eccCCeEEEEeC-----CCCeEEEEeCCCCcE---EEEEeCC-----cc-----------ceeEEEee--
Q psy952          176 AWPNALTL--DYFTERLYWADA-----HLDYIASVDLDGKHK---HIVISGQ-----KV-----------PHVFALTL--  227 (573)
Q Consensus       176 ~~P~glai--D~~~~~LYw~D~-----~~~~I~~~~~dG~~~---~~l~~~~-----~~-----------~~p~~ia~--  227 (573)
                      ..|..|.+  ++.+..+|++..     ..+.|.++.+++..-   +++-...     .+           ..|.+|.+  
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            35777766  888999999988     788888877765322   1110000     01           34666666  


Q ss_pred             eCCeEEEecCCCCceEEEeccCC
Q psy952          228 FEDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       228 ~~~~lywtd~~~~~I~~~~~~~g  250 (573)
                      ++.+||+++|..+.|..++..+.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSST
T ss_pred             CCCEEEEEeCCCCEEEEEEecCC
Confidence            57789999999999988875433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.69  E-value=2.4e-06  Score=85.30  Aligned_cols=184  Identities=14%  Similarity=0.165  Sum_probs=118.4

Q ss_pred             EEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecC---C----cEEEEeCC--CCeEEEEEcCCC--ceeEec-
Q psy952           59 FYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVG---R----KLYWLDRH--SKQLDVAELDGT--NRKTLK-  126 (573)
Q Consensus        59 ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~---~----~LY~td~~--~~~I~~~~ldg~--~~~~l~-  126 (573)
                      ++++-...+.|+.++++|.....+ .  ..+++++.+-+--   +    .+|.++..  .++|.++.++..  ..+.+. 
T Consensus        42 ~ii~t~k~~gL~Vydl~G~~l~~~-~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           42 KLITTNKKSGLVVYSLDGKMLHSY-N--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             EEEEEETTTEEEEEETTSCEEEEE-C--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             EEEEEcCCCCEEEEcCCCcEEEEc-c--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            344433346788888877665543 2  2466776665411   1    47999988  899999977632  233331 


Q ss_pred             ------cCCCCcceEEE--eCCCc--eEEEEecCCcCeEEEEec----cCCCcEEEEecCCCCCCCceEEEeccCCeEEE
Q psy952          127 ------TAIQDPRGITL--HPGIG--YVYFSSWNLQAYIGKIGM----DGSNFTRILTHEDDIAWPNALTLDYFTERLYW  192 (573)
Q Consensus       127 ------~~~~~P~~Iav--dp~~g--~LYwtd~~~~~~I~r~~l----dG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw  192 (573)
                            +.+..|.||++  +|..+  ++|+++.  .+.+....+    +|.....++.....-..|.|+++|...++||+
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k--~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Lyv  196 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK--EGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLYI  196 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS--SSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC--CCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEEE
Confidence                  34578999999  88767  5777763  456665444    23222222211122346889999999999999


Q ss_pred             EeCCCCeEEEEeCC--CC-cEEEEEe--CCcc-ceeEEEeee-C----CeEEEecCCCCceEEEecc
Q psy952          193 ADAHLDYIASVDLD--GK-HKHIVIS--GQKV-PHVFALTLF-E----DHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       193 ~D~~~~~I~~~~~d--G~-~~~~l~~--~~~~-~~p~~ia~~-~----~~lywtd~~~~~I~~~~~~  248 (573)
                      ++...+ |++++.+  +. .++++..  ...+ ..+.||+++ .    ++||+++.++++...++..
T Consensus       197 ~eEd~G-Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          197 AEEDEA-IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EETTTE-EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             ecccce-EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            999855 9999955  32 2344432  1113 379999985 3    4899999888887777753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.68  E-value=3.4e-06  Score=93.12  Aligned_cols=233  Identities=10%  Similarity=0.020  Sum_probs=144.7

Q ss_pred             EEEEe--cccEEEEEcC--C-Cceeeccc-----CCcceEEEEEEcCCCEEEEEECC---------CCeEEEEEcCC---
Q psy952           19 LIFSN--KYYVRNMSLD--A-TQYSLVHQ-----DLLNVVAMDFHYKENRFYFADVA---------AKTIYRSRVGS---   76 (573)
Q Consensus        19 l~~s~--~~~I~~i~l~--g-~~~~~~~~-----~~~~~~~v~~d~~~~~ly~~d~~---------~~~I~~~~~~g---   76 (573)
                      |+|+.  ...|+.++++  | .....+..     ....+.+++|.+.++.|+++...         ...|+++++++   
T Consensus        94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            66775  3579999988  4 44443333     23457789999999999887643         14899999988   


Q ss_pred             ---CcceEEEcCCCCCcceeEEeecCCcEEEEeCCC-------CeEEEEEcCC-C---ceeEeccC-CCCcceEEEeCCC
Q psy952           77 ---TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHS-------KQLDVAELDG-T---NRKTLKTA-IQDPRGITLHPGI  141 (573)
Q Consensus        77 ---~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~-------~~I~~~~ldg-~---~~~~l~~~-~~~P~~Iavdp~~  141 (573)
                         +..+.+...+.....++++.+.++.|+|+....       ..|++.++++ .   ..+.+... ...+..+++.|..
T Consensus       174 ~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg  253 (662)
T 3azo_A          174 ADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG  253 (662)
T ss_dssp             TCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS
T ss_pred             ccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC
Confidence               554433303335677788999899999876432       4799999984 3   33444443 4568889999966


Q ss_pred             ceEEEE-ecCCcCeEEEEeccCCCcEEEEecCCCCCC------CceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEE
Q psy952          142 GYVYFS-SWNLQAYIGKIGMDGSNFTRILTHEDDIAW------PNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI  214 (573)
Q Consensus       142 g~LYwt-d~~~~~~I~r~~ldG~~~~~l~~~~~~l~~------P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~  214 (573)
                      . ||++ +......|++.++++...+.+.........      ...+++.+.+..+|.+..+..+|+.+++++...+.|.
T Consensus       254 ~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  332 (662)
T 3azo_A          254 S-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAA  332 (662)
T ss_dssp             C-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECC
T ss_pred             e-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEec
Confidence            6 5555 432234899999866555444411111111      2456665444444444334457888899877665553


Q ss_pred             eCCccceeEEE-eeeCCeEEEecCCC---CceEEEeccCCcceE
Q psy952          215 SGQKVPHVFAL-TLFEDHIYWTDWNT---KSINRADKFNGRDYR  254 (573)
Q Consensus       215 ~~~~~~~p~~i-a~~~~~lywtd~~~---~~I~~~~~~~g~~~~  254 (573)
                      ..  .....++ +..++.++++-...   ..|++++..+++.+.
T Consensus       333 ~~--~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~  374 (662)
T 3azo_A          333 GP--WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART  374 (662)
T ss_dssp             SS--CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred             CC--CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence            32  2344556 67777776653332   367888765555433

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.66  E-value=3.6e-09  Score=97.03  Aligned_cols=49  Identities=37%  Similarity=0.796  Sum_probs=39.6

Q ss_pred             CCcCCCceeeCC--CCceecCCcCcCCCCCCCCCCCCCCCCCCCC-CCCCCCC
Q psy952          523 ITCPPHHLKCAN--TNICVEPYWLCDGDNDCGDMSDEDPLHCQQR-TCPQNSF  572 (573)
Q Consensus       523 ~~C~~~~f~C~~--~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~~-~c~~~~f  572 (573)
                      ..|.+.+|+|.+  | .|||.+|+|||.+||+|||||.+.+|... +|...+|
T Consensus        52 ~~C~~~~F~C~~~~g-~CI~~~~~CDG~~DC~DgSDE~~~~C~~~~~~~~~~~  103 (217)
T 2gtl_M           52 HHCDEHESECRGDVP-ECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSY  103 (217)
T ss_dssp             CCCCTTEEECSSSSC-CEEEGGGTTSSSCCSSSSTTTSHHHHCCGGGCTTCEE
T ss_pred             CCCCCCceecCCCCC-cEechhhccCCCCCCCCCCccccCcCCCCcccCCccc
Confidence            468899999975  6 99999999999999999999975468765 4444433

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=98.66  E-value=7.8e-09  Score=71.44  Aligned_cols=35  Identities=40%  Similarity=1.003  Sum_probs=31.9

Q ss_pred             CCCCCCceecC-----CCcccCCCcccCCCCCCCCCCCCCC
Q psy952          409 PCDKDTEFACR-----NGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       409 ~C~~~~~f~C~-----~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      .|.+. +|+|.     +|+|||..|+|||..||.|+|||.+
T Consensus         6 ~C~~~-~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~   45 (47)
T 1k7b_A            6 SCPPG-QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   45 (47)
T ss_dssp             CCSTT-EECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCCC-ceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC
Confidence            46677 99998     7899999999999999999999975

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.65  E-value=2.4e-06  Score=87.20  Aligned_cols=105  Identities=14%  Similarity=0.168  Sum_probs=72.5

Q ss_pred             CCEEEEEECC-----CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC---------CCCeEEEEEcCCCc
Q psy952           56 ENRFYFADVA-----AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR---------HSKQLDVAELDGTN  121 (573)
Q Consensus        56 ~~~ly~~d~~-----~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~---------~~~~I~~~~ldg~~  121 (573)
                      .++||+++..     .+.|+++++........+..+ ..| +|++++.++.||+++.         ..+.|.++++....
T Consensus        15 ~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g-~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~   92 (361)
T 2oiz_A           15 ENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTA-FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT   92 (361)
T ss_dssp             GGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECC-EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC
T ss_pred             CCEEEEECCCCCccccCeEEEEECCCCeEEEEecCC-CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc
Confidence            4578888753     457888887544333334344 468 9999999999999984         23569999986433


Q ss_pred             -eeEec-c-----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952          122 -RKTLK-T-----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG  162 (573)
Q Consensus       122 -~~~l~-~-----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG  162 (573)
                       ...+. .     ....|.+|+++|..++||+++.+....|..++++.
T Consensus        93 ~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~  140 (361)
T 2oiz_A           93 FEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK  140 (361)
T ss_dssp             EEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT
T ss_pred             EEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCC
Confidence             33332 1     23579999999999999999864345677776653

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.65  E-value=1.2e-08  Score=71.13  Aligned_cols=36  Identities=39%  Similarity=1.059  Sum_probs=32.4

Q ss_pred             CCCCCCCceecC-CCcccCCCcccCCCCCCCCCCCCCC
Q psy952          408 RPCDKDTEFACR-NGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       408 ~~C~~~~~f~C~-~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      ..|.+. +|+|. +|+|||..|+|||..||.|+|||..
T Consensus         5 ~~C~~~-~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~   41 (50)
T 2knx_A            5 KTCGPS-SFSCPGTHVCVPERWLCDGDKDCADGADESI   41 (50)
T ss_dssp             CTTCTT-EEEETTTTEEEETTTTTSSSCCSTTCGGGSG
T ss_pred             CCCCCC-cEEcCCCCeEcChhhcCCCCCCCCCCCcccc
Confidence            356677 99995 9999999999999999999999975

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.58  E-value=6.6e-06  Score=83.97  Aligned_cols=233  Identities=12%  Similarity=0.018  Sum_probs=140.0

Q ss_pred             CEEEEEec-c---cEEEEEcCCCceeecccCCcce-EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952           17 PWLIFSNK-Y---YVRNMSLDATQYSLVHQDLLNV-VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLE   91 (573)
Q Consensus        17 ~~l~~s~~-~---~I~~i~l~g~~~~~~~~~~~~~-~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~   91 (573)
                      .+|+++.. .   .|+.+++++.....+....... .+++|.+.+++|+++... ..|+++++.+.....+.........
T Consensus        48 ~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~g~~~~~~~~~~~~~~  126 (388)
T 3pe7_A           48 SKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-RNLMRVDLATLEENVVYQVPAEWVG  126 (388)
T ss_dssp             CEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-TEEEEEETTTCCEEEEEECCTTEEE
T ss_pred             CEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-CeEEEEECCCCcceeeeechhhccc
Confidence            35666543 3   3999999887766554443333 367899999999998754 5899999987665555432211111


Q ss_pred             e--eEEeecCCcEEEE---------------------eCCCCeEEEEEcCCCceeEeccCCCCcceEEEeC-CCceEEEE
Q psy952           92 G--LAVDWVGRKLYWL---------------------DRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHP-GIGYVYFS  147 (573)
Q Consensus        92 g--lavD~~~~~LY~t---------------------d~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp-~~g~LYwt  147 (573)
                      .  .++++.+..|+..                     ......|+++++.+...+.+.........++++| ....|+++
T Consensus       127 ~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~  206 (388)
T 3pe7_A          127 YGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFC  206 (388)
T ss_dssp             EEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEE
T ss_pred             ccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEE
Confidence            1  2234334444322                     1233578999998777666665555678899999 77777666


Q ss_pred             ecCC----cCeEEEEeccCCCcEEEEecCCCC-CCCceEEEeccCCeEEEEeC-CCC---eEEEEeCCCCcEEEEEeCCc
Q psy952          148 SWNL----QAYIGKIGMDGSNFTRILTHEDDI-AWPNALTLDYFTERLYWADA-HLD---YIASVDLDGKHKHIVISGQK  218 (573)
Q Consensus       148 d~~~----~~~I~r~~ldG~~~~~l~~~~~~l-~~P~glaiD~~~~~LYw~D~-~~~---~I~~~~~dG~~~~~l~~~~~  218 (573)
                      ..+.    ...|+.++++|...+.+.  ...- .....+++.+++.+|+++.. ...   .|+.+++++...+.+.....
T Consensus       207 ~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~  284 (388)
T 3pe7_A          207 HEGPHDLVDARMWLINEDGTNMRKVK--THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPA  284 (388)
T ss_dssp             ECSCTTTSSCSEEEEETTSCCCEESC--CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECC
T ss_pred             EecCCCCCcceEEEEeCCCCceEEee--eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCC
Confidence            5332    448999999988776655  2211 12345788888888866433 222   39999998877766544211


Q ss_pred             cce----eE--EEeeeCCeEEEec--------CCCCceEEEeccCCcc
Q psy952          219 VPH----VF--ALTLFEDHIYWTD--------WNTKSINRADKFNGRD  252 (573)
Q Consensus       219 ~~~----p~--~ia~~~~~lywtd--------~~~~~I~~~~~~~g~~  252 (573)
                      ..+    +.  .+..++..|+++-        .....|+.++..+++.
T Consensus       285 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (388)
T 3pe7_A          285 CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ  332 (388)
T ss_dssp             EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred             ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence            101    11  2334556666542        4456788888655543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.56  E-value=6.1e-06  Score=83.75  Aligned_cols=150  Identities=12%  Similarity=0.186  Sum_probs=107.0

Q ss_pred             cceEEEEEE-cC------CCEEEEEECCCCeEEEEEcCCCcceEEEc-------------CC-----CCCcceeEEeec-
Q psy952           45 LNVVAMDFH-YK------ENRFYFADVAAKTIYRSRVGSTEKERVIR-------------HD-----SHGLEGLAVDWV-   98 (573)
Q Consensus        45 ~~~~~v~~d-~~------~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-------------~~-----~~~p~glavD~~-   98 (573)
                      .....|++| ..      ++.+|++|.....|.++++.......+..             .+     .....|||+.+. 
T Consensus       152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~  231 (381)
T 3q6k_A          152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRD  231 (381)
T ss_dssp             GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCC
T ss_pred             CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCc
Confidence            457788888 32      67899999988899999987643322331             11     136778999887 


Q ss_pred             ---CCcEEEEeCCCCeEEEEEc---C-C---CceeEeccCC--CCcceEEEeCCCceEEEEecCCcCeEEEEeccC----
Q psy952           99 ---GRKLYWLDRHSKQLDVAEL---D-G---TNRKTLKTAI--QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG----  162 (573)
Q Consensus        99 ---~~~LY~td~~~~~I~~~~l---d-g---~~~~~l~~~~--~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG----  162 (573)
                         ++.|||.-....+++++..   . .   ...+.+....  .+..++++|+.+|.||+++.. ...|.+.+.++    
T Consensus       232 ~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~-~~aI~~w~~~~~~~~  310 (381)
T 3q6k_A          232 SEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEAN-TKQVSCWNTQKMPLR  310 (381)
T ss_dssp             TTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESS-SSEEEEEETTSCSBC
T ss_pred             CCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEecc-CCeEEEEeCCCCccc
Confidence               7899999987778888763   2 2   1222233322  344578898779999999965 67899999887    


Q ss_pred             -CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952          163 -SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL  197 (573)
Q Consensus       163 -~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~  197 (573)
                       .+..+|+. ...|.||.+|+|| .++.||+.....
T Consensus       311 ~~n~~~l~~-d~~l~~pd~~~i~-~~g~Lwv~sn~l  344 (381)
T 3q6k_A          311 MKNTDVVYT-SSRFVFGTDISVD-SKGGLWFMSNGF  344 (381)
T ss_dssp             GGGEEEEEE-CTTCCSEEEEEEC-TTSCEEEEECSC
T ss_pred             cCceEEEEE-CCCccccCeEEEC-CCCeEEEEECcc
Confidence             34566665 4589999999999 467899987554

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.54  E-value=3.7e-08  Score=68.03  Aligned_cols=35  Identities=40%  Similarity=0.991  Sum_probs=31.5

Q ss_pred             CCCCCCceecC-----CCcccCCCcccCCCCCCCCCCCCCC
Q psy952          409 PCDKDTEFACR-----NGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       409 ~C~~~~~f~C~-----~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      .|.++ +|+|.     +++|||..|+||++.||.|+|||.+
T Consensus         4 ~C~~~-~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~   43 (47)
T 1jrf_A            4 RCPPG-QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   43 (47)
T ss_dssp             CCCCC-CSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred             CCCCC-eeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc
Confidence            46667 99998     6899999999999999999999965

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.47  E-value=0.00067  Score=66.87  Aligned_cols=238  Identities=8%  Similarity=-0.019  Sum_probs=150.3

Q ss_pred             CCceeeCCCCCCEEEEEecccEEEEEcCCCce----eecc--cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc
Q psy952            6 ESTCKRRDSIKPWLIFSNKYYVRNMSLDATQY----SLVH--QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK   79 (573)
Q Consensus         6 g~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~----~~~~--~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~   79 (573)
                      ..++.+......+|+.+....|+..++.....    ..+.  .....+..++|.+..+.|+... ..+.|..+++.....
T Consensus        53 ~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~  131 (337)
T 1gxr_A           53 VVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-EASTLSIWDLAAPTP  131 (337)
T ss_dssp             CCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-SSSEEEEEECCCC--
T ss_pred             ceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc-CCCcEEEEECCCCCc
Confidence            34455544445677777777888888865422    1111  2345688999998766666654 557899999876542


Q ss_pred             --eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE-eccCCCCcceEEEeCCCceEEEEecCCcCeEE
Q psy952           80 --ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT-LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIG  156 (573)
Q Consensus        80 --~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~-l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~  156 (573)
                        ...+......+..|++.+.++.|+.+. ..+.|.+.++....... +......+..|+++|...+|+...  ....|.
T Consensus       132 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~  208 (337)
T 1gxr_A          132 RIKAELTSSAPACYALAISPDSKVCFSCC-SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG--LDNTVR  208 (337)
T ss_dssp             EEEEEEECSSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEE
T ss_pred             ceeeecccCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEe--cCCcEE
Confidence              222333335678888887655555554 56789999987654333 333455688999999766666655  356788


Q ss_pred             EEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEe
Q psy952          157 KIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWT  235 (573)
Q Consensus       157 r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywt  235 (573)
                      ..++.........   ..-..+..+++.+.+..|+.+. ..+.|...++.......+...  ...+..+++. ++.++++
T Consensus       209 ~~d~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~-~~~~i~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~  282 (337)
T 1gxr_A          209 SWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLH--ESCVLSLKFAYCGKWFVS  282 (337)
T ss_dssp             EEETTTTEEEEEE---ECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECCC--SSCEEEEEECTTSSEEEE
T ss_pred             EEECCCCceEeee---cCCCceEEEEECCCCCEEEEEc-CCCcEEEEECCCCCeEEEcCC--ccceeEEEECCCCCEEEE
Confidence            8887655433333   2233457889987777766654 467888889887665443322  3456777774 3445555


Q ss_pred             cCCCCceEEEeccCCcce
Q psy952          236 DWNTKSINRADKFNGRDY  253 (573)
Q Consensus       236 d~~~~~I~~~~~~~g~~~  253 (573)
                      -...+.|...+..+++..
T Consensus       283 ~~~dg~i~~~~~~~~~~~  300 (337)
T 1gxr_A          283 TGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             EETTSEEEEEETTTCCEE
T ss_pred             ecCCCcEEEEECCCCeEE
Confidence            555677877776666544

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.46  E-value=1.1e-05  Score=82.45  Aligned_cols=196  Identities=11%  Similarity=0.024  Sum_probs=120.0

Q ss_pred             CEEEEEec----ccEEEEEcCCCceeecccCCcceE-EEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-CCc
Q psy952           17 PWLIFSNK----YYVRNMSLDATQYSLVHQDLLNVV-AMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-HGL   90 (573)
Q Consensus        17 ~~l~~s~~----~~I~~i~l~g~~~~~~~~~~~~~~-~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-~~p   90 (573)
                      .+|+++..    ..|+.+++++.....+........ ++.|.+.++.|+++.... .|+++++++.....+..... ..|
T Consensus        48 ~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~-~l~~~d~~~~~~~~~~~~~~~~~~  126 (396)
T 3c5m_A           48 KKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNEL-NLMKVDLETLEEQVIYTVDEEWKG  126 (396)
T ss_dssp             CEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTT-EEEEEETTTCCEEEEEECCTTEEE
T ss_pred             CEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCC-cEEEEECCCCCcEEEEecccccCC
Confidence            35666643    268889998776555433333222 367888888898876543 79999998766554543221 112


Q ss_pred             ce------------------eEEeecCCcEEEEe----CCCCeEEEEEcCCCceeEeccCCCCcceEEEeC-CCceEEEE
Q psy952           91 EG------------------LAVDWVGRKLYWLD----RHSKQLDVAELDGTNRKTLKTAIQDPRGITLHP-GIGYVYFS  147 (573)
Q Consensus        91 ~g------------------lavD~~~~~LY~td----~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp-~~g~LYwt  147 (573)
                      .|                  +++.+.++.|++..    .....|+++++.+...+.+.........+++.| ..+.|+++
T Consensus       127 ~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~  206 (396)
T 3c5m_A          127 YGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFC  206 (396)
T ss_dssp             EEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEE
T ss_pred             CCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEE
Confidence            21                  11222233343332    344578888988766655555555677889999 56656665


Q ss_pred             ecCCc----CeEEEEeccCCCcEEEEecCCC-CCCCceEEEeccCCeEEEEeC--CCCe--EEEEeCCCCcEEEEEe
Q psy952          148 SWNLQ----AYIGKIGMDGSNFTRILTHEDD-IAWPNALTLDYFTERLYWADA--HLDY--IASVDLDGKHKHIVIS  215 (573)
Q Consensus       148 d~~~~----~~I~r~~ldG~~~~~l~~~~~~-l~~P~glaiD~~~~~LYw~D~--~~~~--I~~~~~dG~~~~~l~~  215 (573)
                      ..+..    ..|+.+++++...+.+.  ... ...+..+++.+++.+|+++..  +...  |+.+++.+...+.+..
T Consensus       207 ~~~~~~~~~~~l~~~d~~~~~~~~l~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~  281 (396)
T 3c5m_A          207 HEGPHDLVDARMWLVNEDGSNVRKIK--EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV  281 (396)
T ss_dssp             ECSCSSSCSCCCEEEETTSCCCEESS--CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE
T ss_pred             ecCCCCCCCceEEEEECCCCceeEee--ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee
Confidence            43322    57999999887665554  211 223556789888888877643  2334  9999998766655554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.42  E-value=2.6e-05  Score=86.70  Aligned_cols=239  Identities=12%  Similarity=0.115  Sum_probs=150.5

Q ss_pred             ceeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC-----CcceEE
Q psy952            8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS-----TEKERV   82 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g-----~~~~~i   82 (573)
                      +..+.+ +..+|+++....|+.+++.+.....+......+..++|.+.++.|+++  ..+.|+.+++++     .....+
T Consensus        85 ~~~~~s-pd~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~--~~~~i~v~~~~~~~~~~g~~~~~  161 (706)
T 2z3z_A           85 FRTLDA-GRGLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV--RNHNLYIARGGKLGEGMSRAIAV  161 (706)
T ss_dssp             EEEEET-TTTEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE--ETTEEEEEECBCTTSCCCCCEES
T ss_pred             eeEEEC-CCCeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE--ECCeEEEEecCcccccCCCcEEe
Confidence            344433 337888888889999999877655444444456678899988888886  347899999876     544433


Q ss_pred             EcCCCC--------------CcceeEEeecCCcEEEEeC--------------------------------CCCeEEEEE
Q psy952           83 IRHDSH--------------GLEGLAVDWVGRKLYWLDR--------------------------------HSKQLDVAE  116 (573)
Q Consensus        83 ~~~~~~--------------~p~glavD~~~~~LY~td~--------------------------------~~~~I~~~~  116 (573)
                      ...+..              .+.++++.+.++.|+++..                                ....|.+.+
T Consensus       162 ~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d  241 (706)
T 2z3z_A          162 TIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH  241 (706)
T ss_dssp             CSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE
T ss_pred             ccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE
Confidence            322211              2578899888888888751                                235788889


Q ss_pred             cCCCceeEeccC---CCCcceEEEeCCCceEEEEecCC---cCeEEEEeccCC-CcEEEEec-CCC-CCCCceEEEec--
Q psy952          117 LDGTNRKTLKTA---IQDPRGITLHPGIGYVYFSSWNL---QAYIGKIGMDGS-NFTRILTH-EDD-IAWPNALTLDY--  185 (573)
Q Consensus       117 ldg~~~~~l~~~---~~~P~~Iavdp~~g~LYwtd~~~---~~~I~r~~ldG~-~~~~l~~~-~~~-l~~P~glaiD~--  185 (573)
                      +++...+.+...   ...+..+++.|...+|+++....   ...|...++++. ..+.+... ... +.....+++.+  
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~  321 (706)
T 2z3z_A          242 LATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGS  321 (706)
T ss_dssp             TTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTC
T ss_pred             CCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCC
Confidence            887665444422   23467899999888888865322   247888888765 44444310 111 11236788887  


Q ss_pred             cCCeEEEEeC-CCCeEEEEeCCCCcEEEEEeCCccceeEE-Eee--eCCeEEEecCCCC----ceEEEeccCCc
Q psy952          186 FTERLYWADA-HLDYIASVDLDGKHKHIVISGQKVPHVFA-LTL--FEDHIYWTDWNTK----SINRADKFNGR  251 (573)
Q Consensus       186 ~~~~LYw~D~-~~~~I~~~~~dG~~~~~l~~~~~~~~p~~-ia~--~~~~lywtd~~~~----~I~~~~~~~g~  251 (573)
                      .+..||.++. +..+|+.++.+|...+.+..+.  ....+ +++  ++..||++....+    .|++++..++.
T Consensus       322 dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~--~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~  393 (706)
T 2z3z_A          322 NNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE--WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK  393 (706)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTSCEEEECCCSS--SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred             CCEEEEEEccCCccEEEEEECCCCEEEecCCCC--eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence            5555555543 2357888888887666554432  12223 444  4567888765543    78888765554

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.41  E-value=2.2e-05  Score=87.19  Aligned_cols=228  Identities=11%  Similarity=0.044  Sum_probs=143.3

Q ss_pred             CEEEEEecccEEEEEcCC-----CceeecccCCcc---------------eEEEEEEcCCCEEEEEEC------------
Q psy952           17 PWLIFSNKYYVRNMSLDA-----TQYSLVHQDLLN---------------VVAMDFHYKENRFYFADV------------   64 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l~g-----~~~~~~~~~~~~---------------~~~v~~d~~~~~ly~~d~------------   64 (573)
                      .+|+++....|+.+++.+     .....+......               +.+++|.+.+++|+++..            
T Consensus       133 ~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~  212 (706)
T 2z3z_A          133 DRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVD  212 (706)
T ss_dssp             SEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEE
T ss_pred             CEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeec
Confidence            467777788999999976     544433222221               478899999999988752            


Q ss_pred             --------------------CCCeEEEEEcCCCcceEEEcC--CCCCcceeEEeecCCcEEEEeCCC----CeEEEEEcC
Q psy952           65 --------------------AAKTIYRSRVGSTEKERVIRH--DSHGLEGLAVDWVGRKLYWLDRHS----KQLDVAELD  118 (573)
Q Consensus        65 --------------------~~~~I~~~~~~g~~~~~i~~~--~~~~p~glavD~~~~~LY~td~~~----~~I~~~~ld  118 (573)
                                          ....|+.+++++.....+...  .-..+..+++.+.++.|+++....    ..|.+.++.
T Consensus       213 ~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~  292 (706)
T 2z3z_A          213 YHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAE  292 (706)
T ss_dssp             CCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETT
T ss_pred             cCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECC
Confidence                                235788888877654333221  113456788887778888864322    378888887


Q ss_pred             CC-ceeEecc--CC---CCcceEEEeC--CCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCc-e-EEEeccCC
Q psy952          119 GT-NRKTLKT--AI---QDPRGITLHP--GIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN-A-LTLDYFTE  188 (573)
Q Consensus       119 g~-~~~~l~~--~~---~~P~~Iavdp--~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~-g-laiD~~~~  188 (573)
                      +. ..+.+..  ..   .....+++.|  ...+||.++.....+|+.++++|...+.+.   . -.++. . ++++++++
T Consensus       293 ~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~---~-~~~~v~~~~~~spdg~  368 (706)
T 2z3z_A          293 TGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT---K-GEWEVTNFAGFDPKGT  368 (706)
T ss_dssp             TCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC---C-SSSCEEEEEEECTTSS
T ss_pred             CCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC---C-CCeEEEeeeEEcCCCC
Confidence            65 4444442  11   1236789998  776676665444568888887776554443   2 22332 3 78998899


Q ss_pred             eEEEEeCCCC----eEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecC---CCCceEEEeccCCc
Q psy952          189 RLYWADAHLD----YIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDW---NTKSINRADKFNGR  251 (573)
Q Consensus       189 ~LYw~D~~~~----~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~---~~~~I~~~~~~~g~  251 (573)
                      +||++....+    .|+++++++...+.+...   .....+++  ++.+|+++-.   ....|+..+..+++
T Consensus       369 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~---~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          369 RLYFESTEASPLERHFYCIDIKGGKTKDLTPE---SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             EEEEEESSSCTTCBEEEEEETTCCCCEESCCS---SSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             EEEEEecCCCCceEEEEEEEcCCCCceeccCC---CceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            9999876654    899999887665544432   23455565  3445555422   12457777765554

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.40  E-value=0.001  Score=68.23  Aligned_cols=228  Identities=10%  Similarity=-0.030  Sum_probs=146.1

Q ss_pred             CCEEEEEecccEEEEEcCCCceeeccc--CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952           16 KPWLIFSNKYYVRNMSLDATQYSLVHQ--DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL   93 (573)
Q Consensus        16 ~~~l~~s~~~~I~~i~l~g~~~~~~~~--~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl   93 (573)
                      ..++..+..+.|+..++..........  ....+..|+|.+.+..|+.+. ..+.|..+++........+......+..|
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  182 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL-GNGLVDIYDVESQTKLRTMAGHQARVGCL  182 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC-CCCeEEEEECcCCeEEEEecCCCCceEEE
Confidence            456666777889999997665543332  345688999998666666554 56788889987654433443333456666


Q ss_pred             EEeecCCcEEEEeCCCCeEEEEEcCC-C-ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec
Q psy952           94 AVDWVGRKLYWLDRHSKQLDVAELDG-T-NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH  171 (573)
Q Consensus        94 avD~~~~~LY~td~~~~~I~~~~ldg-~-~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~  171 (573)
                      +++   ++++++-...+.|.+.++.. . ....+........+|+++|...+|+...  ....|...++........+  
T Consensus       183 ~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~--  255 (401)
T 4aez_A          183 SWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG--NDNVVQIWDARSSIPKFTK--  255 (401)
T ss_dssp             EEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTCSSEEEEE--
T ss_pred             EEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe--CCCeEEEccCCCCCccEEe--
Confidence            663   45556666678999999873 2 2333444556689999999655555554  3467777777755444334  


Q ss_pred             CCCCCCCceEEEeccCCeEEEEeC--CCCeEEEEeCCCCcEEEEEeCCccceeEEEeee--CCeEEEe-cCCCCceEEEe
Q psy952          172 EDDIAWPNALTLDYFTERLYWADA--HLDYIASVDLDGKHKHIVISGQKVPHVFALTLF--EDHIYWT-DWNTKSINRAD  246 (573)
Q Consensus       172 ~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--~~~lywt-d~~~~~I~~~~  246 (573)
                      ...-.....|++.+.+..|+.+-.  ..+.|...++........+..  -.....+++.  +..|+.+ ....+.|...+
T Consensus       256 ~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~  333 (401)
T 4aez_A          256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA--GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWS  333 (401)
T ss_dssp             CCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECTTTCEEEEEE
T ss_pred             cCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC--CCcEEEEEECCCCCeEEEEeecCCCcEEEEe
Confidence            344455689999988888888755  578899999876554433332  2356777773  3445554 33566777666


Q ss_pred             ccCCcce
Q psy952          247 KFNGRDY  253 (573)
Q Consensus       247 ~~~g~~~  253 (573)
                      ..++...
T Consensus       334 ~~~~~~~  340 (401)
T 4aez_A          334 YSSSGLT  340 (401)
T ss_dssp             EETTEEE
T ss_pred             cCCccce
Confidence            5554433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.39  E-value=1.3e-05  Score=88.31  Aligned_cols=200  Identities=10%  Similarity=0.040  Sum_probs=127.7

Q ss_pred             EEEEE--cCCCE-EEEEECCCCeEEEEEcC--C-CcceEEEcC----CCCCcceeEEeecCCcEEEEeCC---------C
Q psy952           49 AMDFH--YKENR-FYFADVAAKTIYRSRVG--S-TEKERVIRH----DSHGLEGLAVDWVGRKLYWLDRH---------S  109 (573)
Q Consensus        49 ~v~~d--~~~~~-ly~~d~~~~~I~~~~~~--g-~~~~~i~~~----~~~~p~glavD~~~~~LY~td~~---------~  109 (573)
                      ++.+.  +.+++ |+++......|+.++++  | +....+...    ....+.++++.+.++.|+++...         .
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            44454  66788 88887767889999998  4 544444331    12456788999888889887632         1


Q ss_pred             CeEEEEEcCC------CceeEec-cCCCCcceEEEeCCCceEEEEecCC------cCeEEEEeccC-C---CcEEEEecC
Q psy952          110 KQLDVAELDG------TNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNL------QAYIGKIGMDG-S---NFTRILTHE  172 (573)
Q Consensus       110 ~~I~~~~ldg------~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~------~~~I~r~~ldG-~---~~~~l~~~~  172 (573)
                      ..|++.++++      ...+.|. .+.....+++++|...+|+|+.+..      ...|+..++++ .   ..+.+.  .
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~  238 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--G  238 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--E
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--C
Confidence            4799999998      6666666 5445577889999988999887542      25799999984 2   333343  2


Q ss_pred             CCCCCCceEEEeccCCeEEEEeCCCC--eEEEEeCCCCcEEEEEeCC-ccce------eEEEeee-CCeEEEecC-CCCc
Q psy952          173 DDIAWPNALTLDYFTERLYWADAHLD--YIASVDLDGKHKHIVISGQ-KVPH------VFALTLF-EDHIYWTDW-NTKS  241 (573)
Q Consensus       173 ~~l~~P~glaiD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~l~~~~-~~~~------p~~ia~~-~~~lywtd~-~~~~  241 (573)
                      ..-..+..+++.+++. ||++....+  .|+++++++...+.+.... ....      ...+++. +++++++-. ....
T Consensus       239 ~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~  317 (662)
T 3azo_A          239 GPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAV  317 (662)
T ss_dssp             ETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCE
T ss_pred             CCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccE
Confidence            2234566788887666 666654444  8999998666555444321 1111      2345553 556655532 4456


Q ss_pred             eEEEeccCCc
Q psy952          242 INRADKFNGR  251 (573)
Q Consensus       242 I~~~~~~~g~  251 (573)
                      |++++..++.
T Consensus       318 l~~~d~~~~~  327 (662)
T 3azo_A          318 LGILDPESGE  327 (662)
T ss_dssp             EEEEETTTTE
T ss_pred             EEEEECCCCc
Confidence            7777754443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.38  E-value=0.00033  Score=75.31  Aligned_cols=229  Identities=11%  Similarity=0.075  Sum_probs=149.3

Q ss_pred             EEEEE-ecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEe
Q psy952           18 WLIFS-NKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVD   96 (573)
Q Consensus        18 ~l~~s-~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD   96 (573)
                      +|+.+ ....|+..++++.....+......+.+++|.+....|... ...+.|...+.++.....+... -..+.+|++.
T Consensus       317 ~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~-~~dg~v~~~~~~~~~~~~~~~~-~~~v~~~~~s  394 (577)
T 2ymu_A          317 TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGH-SSSVRGVAFS  394 (577)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTCCEEEEEECC-SSCEEEEEEC
T ss_pred             EEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEcCCCCEEEEecCC-CCCeEEEEEC
Confidence            44433 3457887888776655544445568899999876666554 4566788888877655544433 3578899998


Q ss_pred             ecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCC
Q psy952           97 WVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIA  176 (573)
Q Consensus        97 ~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~  176 (573)
                      +.++.|..+. ..+.|.+.+.++....++...-....+|++.|...+|..+.  ....|...++++.....+.   ..-.
T Consensus       395 ~dg~~l~~~~-~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--~d~~v~~w~~~~~~~~~~~---~~~~  468 (577)
T 2ymu_A          395 PDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS--DDKTVKLWNRNGQLLQTLT---GHSS  468 (577)
T ss_dssp             TTSSCEEEEE-TTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTSCEEEEEE---CCSS
T ss_pred             CCCCEEEEEe-CCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEc--CCCEEEEEECCCCEEEEEc---CCCC
Confidence            8666665554 46789999988877766665556678999999777666554  3566777778876665555   2333


Q ss_pred             CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEE
Q psy952          177 WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRV  255 (573)
Q Consensus       177 ~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~  255 (573)
                      ....|++.+.+..|..+ ...+.|...+.+|...+.+...  ......|++. ++.+..+-...+.|..-+ .+|+...+
T Consensus       469 ~v~~~~~spd~~~las~-~~d~~i~iw~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~dg~v~lwd-~~~~~~~~  544 (577)
T 2ymu_A          469 SVRGVAFSPDGQTIASA-SDDKTVKLWNRNGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT  544 (577)
T ss_dssp             CEEEEEECTTSCEEEEE-ETTSEEEEEETTSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEE
T ss_pred             CEEEEEEcCCCCEEEEE-eCCCEEEEEcCCCCEEEEEeCC--CCCEEEEEEcCCCCEEEEEECcCEEEEEe-CCCCEEEE
Confidence            45789998766655544 4567788888888766665432  2456778773 344444444456666555 56665555


Q ss_pred             Ecc
Q psy952          256 LRN  258 (573)
Q Consensus       256 l~~  258 (573)
                      +..
T Consensus       545 ~~~  547 (577)
T 2ymu_A          545 LTG  547 (577)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.36  E-value=0.0004  Score=72.56  Aligned_cols=195  Identities=10%  Similarity=-0.010  Sum_probs=121.9

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcC--CCcceEEEc--CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVG--STEKERVIR--HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~--g~~~~~i~~--~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~  121 (573)
                      .+.+|+|.+.+..|+++-...+.|..+++.  +......+.  ..-..+..|++.+.++.|+.++. .+.|.+.++....
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~~~  182 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINSIP  182 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTSCC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCCcc
Confidence            478999999888888887777888888887  443333332  12256789999987777877764 6789999876543


Q ss_pred             ee-----EeccCCCCcceEEEeCC---CceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCCCCceEEEeccCCeEEE
Q psy952          122 RK-----TLKTAIQDPRGITLHPG---IGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIAWPNALTLDYFTERLYW  192 (573)
Q Consensus       122 ~~-----~l~~~~~~P~~Iavdp~---~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~~P~glaiD~~~~~LYw  192 (573)
                      ..     .+......+..|+++|.   ..+|+.+..  ...|...++.... ...+.  ...-.....|++. .+..|+.
T Consensus       183 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~--d~~i~vwd~~~~~~~~~~~--~~h~~~v~~~~~s-d~~~l~s  257 (450)
T 2vdu_B          183 EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR--DEHIKISHYPQCFIVDKWL--FGHKHFVSSICCG-KDYLLLS  257 (450)
T ss_dssp             CSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET--TSCEEEEEESCTTCEEEEC--CCCSSCEEEEEEC-STTEEEE
T ss_pred             cccccceeeecccCceEEEEEcCCCCCCcEEEEEcC--CCcEEEEECCCCceeeeee--cCCCCceEEEEEC-CCCEEEE
Confidence            32     22234456889999996   445655553  4566666665433 33323  2333456788888 5555555


Q ss_pred             EeCCCCeEEEEeCCCCcE-EEEEeC-----------------------CccceeEEEeee--CCeEEEecCCCCceEEEe
Q psy952          193 ADAHLDYIASVDLDGKHK-HIVISG-----------------------QKVPHVFALTLF--EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       193 ~D~~~~~I~~~~~dG~~~-~~l~~~-----------------------~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~  246 (573)
                      + ...+.|...++..... ..+...                       ..-....+|++.  +..||.+-...+.|...+
T Consensus       258 ~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~  336 (450)
T 2vdu_B          258 A-GGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILE  336 (450)
T ss_dssp             E-ESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEE
T ss_pred             E-eCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            4 4677888888875543 333211                       001123456653  556777765667776665


Q ss_pred             c
Q psy952          247 K  247 (573)
Q Consensus       247 ~  247 (573)
                      .
T Consensus       337 ~  337 (450)
T 2vdu_B          337 M  337 (450)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.34  E-value=6.1e-05  Score=76.70  Aligned_cols=201  Identities=8%  Similarity=0.021  Sum_probs=124.5

Q ss_pred             EEEEcCCCEEEEEECCCC--eEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc
Q psy952           50 MDFHYKENRFYFADVAAK--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT  127 (573)
Q Consensus        50 v~~d~~~~~ly~~d~~~~--~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~  127 (573)
                      ++|.+.+++|+++....+  .|+.++++++....+.........++++.+.++.|+++... ..|.+.++.+...+.+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~-~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG-RNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT-TEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC-CeEEEEECCCCcceeeee
Confidence            568888888887765333  69999998776655443322223367888888899998853 589999998776555543


Q ss_pred             CCCC---cceEEEeCCCceEEEEe--------------------cCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEe
Q psy952          128 AIQD---PRGITLHPGIGYVYFSS--------------------WNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD  184 (573)
Q Consensus       128 ~~~~---P~~Iavdp~~g~LYwtd--------------------~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD  184 (573)
                      .-..   ....++++...+|+...                    ......|++.++++...+.+.   ..-.....+++.
T Consensus       120 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~---~~~~~~~~~~~s  196 (388)
T 3pe7_A          120 VPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL---QENQWLGHPIYR  196 (388)
T ss_dssp             CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE---EESSCEEEEEEE
T ss_pred             chhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee---cCCccccccEEC
Confidence            2111   12233466555554321                    112367999998877666665   222345788999


Q ss_pred             c-cCCeEEEEeCC-----CCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEE-ecCCCC---ceEEEeccCCcc
Q psy952          185 Y-FTERLYWADAH-----LDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYW-TDWNTK---SINRADKFNGRD  252 (573)
Q Consensus       185 ~-~~~~LYw~D~~-----~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lyw-td~~~~---~I~~~~~~~g~~  252 (573)
                      + ++.+|+++...     ...|+.++++|...+.+...........+++  ++..|++ ++....   .|+..+..+|+.
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (388)
T 3pe7_A          197 PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN  276 (388)
T ss_dssp             TTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred             CCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence            8 78888666543     4489999999887766654320012334454  4555755 443222   388888766654


Q ss_pred             eE
Q psy952          253 YR  254 (573)
Q Consensus       253 ~~  254 (573)
                      +.
T Consensus       277 ~~  278 (388)
T 3pe7_A          277 RQ  278 (388)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.34  E-value=0.00011  Score=82.13  Aligned_cols=233  Identities=10%  Similarity=0.046  Sum_probs=145.1

Q ss_pred             CCEEEEEecccEEEEEcCCC---ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCC----
Q psy952           16 KPWLIFSNKYYVRNMSLDAT---QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSH----   88 (573)
Q Consensus        16 ~~~l~~s~~~~I~~i~l~g~---~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~----   88 (573)
                      ..+|+++....|+.+++.+.   ....+......+..++|.+.+++|+++..  +.|+.++++++....+...+..    
T Consensus       120 g~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~  197 (741)
T 2ecf_A          120 AQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG--RNLWVIDLASGRQMQLTADGSTTIGN  197 (741)
T ss_dssp             SSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET--TEEEEEETTTTEEEECCCCCCSSEEE
T ss_pred             CCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC--CcEEEEecCCCCEEEeccCCccceec
Confidence            35788887789999999876   55444444456889999999998888763  4899999987654433322211    


Q ss_pred             ------------CcceeEEeecCCcEEEEeCCC--------------------------------CeEEEEEcCC-Ccee
Q psy952           89 ------------GLEGLAVDWVGRKLYWLDRHS--------------------------------KQLDVAELDG-TNRK  123 (573)
Q Consensus        89 ------------~p~glavD~~~~~LY~td~~~--------------------------------~~I~~~~ldg-~~~~  123 (573)
                                  .+.++++.+.++.|+++....                                ..|.+.++++ ....
T Consensus       198 g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~  277 (741)
T 2ecf_A          198 GIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ  277 (741)
T ss_dssp             SCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE
T ss_pred             cccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceE
Confidence                        257889988888898874321                                1677788876 5544


Q ss_pred             Eecc---CCCCcceEEEeCCCceEEEEecC---CcCeEEEEeccCCCcEEEEecCCC--CCCCceEEEeccCCeEEEEeC
Q psy952          124 TLKT---AIQDPRGITLHPGIGYVYFSSWN---LQAYIGKIGMDGSNFTRILTHEDD--IAWPNALTLDYFTERLYWADA  195 (573)
Q Consensus       124 ~l~~---~~~~P~~Iavdp~~g~LYwtd~~---~~~~I~r~~ldG~~~~~l~~~~~~--l~~P~glaiD~~~~~LYw~D~  195 (573)
                      .+..   ....+..+++ |...+|+++...   ....|+..++.+...+.+......  +.....+++.+++. ++++..
T Consensus       278 ~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~-~~~~~~  355 (741)
T 2ecf_A          278 WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGS-ILWSSE  355 (741)
T ss_dssp             EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSC-EEEEEC
T ss_pred             EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCe-EEEEec
Confidence            4432   2234678999 988888877531   245788888876665555421111  11235788887666 555544


Q ss_pred             CC--CeEEEEeCCCCcEEEEEeCCccceeEEE---eeeCCeEEEecCCC----CceEEEeccCCcceEEE
Q psy952          196 HL--DYIASVDLDGKHKHIVISGQKVPHVFAL---TLFEDHIYWTDWNT----KSINRADKFNGRDYRVL  256 (573)
Q Consensus       196 ~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~i---a~~~~~lywtd~~~----~~I~~~~~~~g~~~~~l  256 (573)
                      ..  .+|+.++.+|. .+.+..+.  .....+   .-+++.||++-...    ..|++++ .+|...+.|
T Consensus       356 ~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~-~~g~~~~~l  421 (741)
T 2ecf_A          356 RTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVP-LQGGQPQRL  421 (741)
T ss_dssp             TTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE-TTCCCCEEC
T ss_pred             CCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE-cCCCCeeec
Confidence            43  47888888887 54444332  223333   33456787764432    3466665 334433333

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.34  E-value=0.00073  Score=66.59  Aligned_cols=217  Identities=9%  Similarity=0.007  Sum_probs=136.6

Q ss_pred             CEEEEEe-cccEEEEEcCCCce--e-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcce
Q psy952           17 PWLIFSN-KYYVRNMSLDATQY--S-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEG   92 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~--~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~g   92 (573)
                      .+|+.+. ...|+.+++.....  . .+......+..++|.+..+.|+... ..+.|+.+++........+......+..
T Consensus       110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~~~d~~~~~~~~~~~~~~~~i~~  188 (337)
T 1gxr_A          110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC-SDGNIAVWDLHNQTLVRQFQGHTDGASC  188 (337)
T ss_dssp             SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceeeeeecccCceEE
Confidence            4555544 46788888876542  1 2223344578999998666666654 5567999998765444444433457888


Q ss_pred             eEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecC
Q psy952           93 LAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE  172 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~  172 (573)
                      |++.+.++.|+.+ ...+.|.+.++..............+..++++|...+|+...  ....|...++.......+.   
T Consensus       189 ~~~~~~~~~l~~~-~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~~~~i~~~~~~~~~~~~~~---  262 (337)
T 1gxr_A          189 IDISNDGTKLWTG-GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM--ESSNVEVLHVNKPDKYQLH---  262 (337)
T ss_dssp             EEECTTSSEEEEE-ETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTSSCEEEEC---
T ss_pred             EEECCCCCEEEEE-ecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEc--CCCcEEEEECCCCCeEEEc---
Confidence            9998765555554 457889999987665444444445688999999777777665  3567888888766554433   


Q ss_pred             CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceE
Q psy952          173 DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSIN  243 (573)
Q Consensus       173 ~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~  243 (573)
                      ..-..+..+++.+.+..|+.+ ...+.|...++...........  ...+.++++. ++.++++-...+.|.
T Consensus       263 ~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~  331 (337)
T 1gxr_A          263 LHESCVLSLKFAYCGKWFVST-GKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISVDDKYIVTGSGDKKAT  331 (337)
T ss_dssp             CCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             CCccceeEEEECCCCCEEEEe-cCCCcEEEEECCCCeEEEEecC--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence            334456789998766665554 4577888888876555433332  2356677764 233333332344443

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.32  E-value=0.00059  Score=73.37  Aligned_cols=229  Identities=11%  Similarity=0.061  Sum_probs=147.7

Q ss_pred             EEEEE-ecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEe
Q psy952           18 WLIFS-NKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVD   96 (573)
Q Consensus        18 ~l~~s-~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD   96 (573)
                      +|+.+ ....|+..+.++.....+......+.+++|.+....|+. -...+.|...++++.....+.. ....+.++++.
T Consensus       276 ~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~~~d~~i~~w~~~~~~~~~~~~-~~~~v~~~~~s  353 (577)
T 2ymu_A          276 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIAS-ASDDKTVKLWNRNGQHLQTLTG-HSSSVWGVAFS  353 (577)
T ss_dssp             EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTSCEEEEECC-CSSCEEEEEEC
T ss_pred             EEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeCCCCeeEEEeC-CCCCEEEEEEC
Confidence            34433 345677777776654444444456889999986665554 4456788888888765554432 23567889998


Q ss_pred             ecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCC
Q psy952           97 WVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIA  176 (573)
Q Consensus        97 ~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~  176 (573)
                      +.++.|.... ..+.|.+.+.++.....+......+++|+++|...+|....  ....|...+..+.....+.   ..-.
T Consensus       354 ~~g~~l~~~~-~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~d~~v~~~~~~~~~~~~~~---~~~~  427 (577)
T 2ymu_A          354 PDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS--DDKTVKLWNRNGQLLQTLT---GHSS  427 (577)
T ss_dssp             TTSSEEEEEE-TTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSEEEEECTTCCEEEEEE---CCSS
T ss_pred             CCCCEEEEEe-CCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEe--CCCEEEEEeCCCCEEEEec---CCCC
Confidence            7666655544 56789889988877766665556689999999776666554  3456777777776655554   2223


Q ss_pred             CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEE
Q psy952          177 WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRV  255 (573)
Q Consensus       177 ~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~  255 (573)
                      ...+|++.+.+..|..+ ...+.|...+.++.....+...  .....+|++. ++.++.+-...+.|..-+ .+|+....
T Consensus       428 ~v~~~~~s~d~~~l~~~-~~d~~v~~w~~~~~~~~~~~~~--~~~v~~~~~spd~~~las~~~d~~i~iw~-~~~~~~~~  503 (577)
T 2ymu_A          428 SVWGVAFSPDDQTIASA-SDDKTVKLWNRNGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT  503 (577)
T ss_dssp             CEEEEEECTTSSEEEEE-ETTSEEEEEETTSCEEEEEECC--SSCEEEEEECTTSCEEEEEETTSEEEEEE-TTSCEEEE
T ss_pred             CeEEEEECCCCCEEEEE-cCCCEEEEEECCCCEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEc-CCCCEEEE
Confidence            34688998766666554 3567788888888766655432  2356677774 445555544556666555 46665555


Q ss_pred             Ecc
Q psy952          256 LRN  258 (573)
Q Consensus       256 l~~  258 (573)
                      +..
T Consensus       504 ~~~  506 (577)
T 2ymu_A          504 LTG  506 (577)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.30  E-value=0.0007  Score=69.35  Aligned_cols=225  Identities=9%  Similarity=-0.026  Sum_probs=139.7

Q ss_pred             cccEEEEEcCCCc-----eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-------cceEEEcCCCCCcc
Q psy952           24 KYYVRNMSLDATQ-----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-------EKERVIRHDSHGLE   91 (573)
Q Consensus        24 ~~~I~~i~l~g~~-----~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-------~~~~i~~~~~~~p~   91 (573)
                      .+.|+.++++...     ...+......+.+|+|.+.++.++++-...+.|..+++...       .....+......+.
T Consensus        56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~  135 (402)
T 2aq5_A           56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG  135 (402)
T ss_dssp             SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred             CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence            5688888885431     11222234558899999845555556566788998888754       22223333346788


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEe--ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEE
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTL--KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI  168 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l--~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l  168 (573)
                      .|++.+.+.+++++-...+.|.+.++..... ..+  .........|+++|...+|+.+.  ....|...++........
T Consensus       136 ~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~  213 (402)
T 2aq5_A          136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC--RDKRVRVIEPRKGTVVAE  213 (402)
T ss_dssp             EEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE--TTSEEEEEETTTTEEEEE
T ss_pred             EEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe--cCCcEEEEeCCCCceeee
Confidence            8999887767777776778999999875543 334  23445578999999666666655  356788777764432222


Q ss_pred             EecCCCCCCCceEEEeccCCeEEEEe---CCCCeEEEEeCCCCcE--EEEEeCCccceeEEEeee--CCeEEEecCCCCc
Q psy952          169 LTHEDDIAWPNALTLDYFTERLYWAD---AHLDYIASVDLDGKHK--HIVISGQKVPHVFALTLF--EDHIYWTDWNTKS  241 (573)
Q Consensus       169 ~~~~~~l~~P~glaiD~~~~~LYw~D---~~~~~I~~~~~dG~~~--~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~  241 (573)
                      +.....-..+..+++.+. ++++.+-   ...+.|...++.....  ....... ......+++.  +..||++-...+.
T Consensus       214 ~~~~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~g~~dg~  291 (402)
T 2aq5_A          214 KDRPHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEEPLSLQELDT-SSGVLLPFFDPDTNIVYLCGKGDSS  291 (402)
T ss_dssp             EECSSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCC-CSSCEEEEEETTTTEEEEEETTCSC
T ss_pred             eccCCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccCCceEEeccC-CCceeEEEEcCCCCEEEEEEcCCCe
Confidence            200122223678888865 4554444   4667888888875432  2222121 2346667764  5578888767778


Q ss_pred             eEEEeccCCcc
Q psy952          242 INRADKFNGRD  252 (573)
Q Consensus       242 I~~~~~~~g~~  252 (573)
                      |...+..+++.
T Consensus       292 i~i~d~~~~~~  302 (402)
T 2aq5_A          292 IRYFEITSEAP  302 (402)
T ss_dssp             EEEEEECSSTT
T ss_pred             EEEEEecCCCc
Confidence            88777666653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.29  E-value=0.00058  Score=76.02  Aligned_cols=226  Identities=9%  Similarity=0.054  Sum_probs=140.0

Q ss_pred             cEEEEEcCCCceeeccc------CC-cceEEEEEEcCCCEEEEEECCCC----eEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           26 YVRNMSLDATQYSLVHQ------DL-LNVVAMDFHYKENRFYFADVAAK----TIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~------~~-~~~~~v~~d~~~~~ly~~d~~~~----~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      .|+++++.+...++++.      .. ....+++|.+.+++|.++-...+    .|+.++++++....+.... ....+++
T Consensus        99 ~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~  177 (710)
T 2xdw_A           99 VLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMA  177 (710)
T ss_dssp             EEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEE
T ss_pred             EEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEE
Confidence            67888876655443321      11 13678999998888877644332    7999999876554332222 1355677


Q ss_pred             EeecCCcEEEEeCCC---------------CeEEEEEcCCCcee--EeccCCC---CcceEEEeCCCceEEEEecCC---
Q psy952           95 VDWVGRKLYWLDRHS---------------KQLDVAELDGTNRK--TLKTAIQ---DPRGITLHPGIGYVYFSSWNL---  151 (573)
Q Consensus        95 vD~~~~~LY~td~~~---------------~~I~~~~ldg~~~~--~l~~~~~---~P~~Iavdp~~g~LYwtd~~~---  151 (573)
                      +.+.++.||++....               ..|++.++.+....  .+.....   ...+++++|..++|+++....   
T Consensus       178 wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  257 (710)
T 2xdw_A          178 WTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDP  257 (710)
T ss_dssp             ECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSS
T ss_pred             EEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCC
Confidence            777778888876432               34899998765432  3333322   246899999988988876422   


Q ss_pred             cCeEEEEeccC------C--CcEEEEecCCCCCCCceEEEeccCCeEEEEeCC---CCeEEEEeCCCCc---EEEEEeCC
Q psy952          152 QAYIGKIGMDG------S--NFTRILTHEDDIAWPNALTLDYFTERLYWADAH---LDYIASVDLDGKH---KHIVISGQ  217 (573)
Q Consensus       152 ~~~I~r~~ldG------~--~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~---~~~I~~~~~dG~~---~~~l~~~~  217 (573)
                      ...|+..++++      .  ..+.|.   .... .....+++.+++||+....   ..+|+.+++++..   .+.|+...
T Consensus       258 ~~~l~~~d~~~~~~~~~~~~~~~~l~---~~~~-~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~  333 (710)
T 2xdw_A          258 VNRLWYCDLQQESNGITGILKWVKLI---DNFE-GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH  333 (710)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEE---CSSS-SCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC
T ss_pred             ccEEEEEECcccccccCCccceEEee---CCCC-cEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC
Confidence            46899999875      3  344454   2111 1223466778999987543   3479999998764   24555432


Q ss_pred             ccceeEEEeee-CCeEEEecCCCC--ceEEEeccCCcceEEE
Q psy952          218 KVPHVFALTLF-EDHIYWTDWNTK--SINRADKFNGRDYRVL  256 (573)
Q Consensus       218 ~~~~p~~ia~~-~~~lywtd~~~~--~I~~~~~~~g~~~~~l  256 (573)
                      ......++++. +++|+++-...+  +|++++..+|+..+.|
T Consensus       334 ~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l  375 (710)
T 2xdw_A          334 EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF  375 (710)
T ss_dssp             SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred             CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEec
Confidence            11245677776 788887754433  5777775566644444

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.27  E-value=3.2e-07  Score=83.26  Aligned_cols=49  Identities=31%  Similarity=0.621  Sum_probs=39.7

Q ss_pred             CCCCCCCceecC--CCcccCCCcccCCCCCCCCCCCCCCCccCCc-CCCCCCc
Q psy952          408 RPCDKDTEFACR--NGHCIPKLWVCDFDNDCGDDSDEPAYMCRQR-NCTKGWE  457 (573)
Q Consensus       408 ~~C~~~~~f~C~--~g~ci~~~~~Cd~~~dC~d~sDE~~~~C~~~-~C~~~~~  457 (573)
                      ..|.+. +|+|.  +|.|||..|+|||..||.|||||....|... +|.+.+|
T Consensus        51 ~~C~~~-eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF  102 (220)
T 2gtl_N           51 THCEKR-TFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVF  102 (220)
T ss_dssp             CSSCTT-EEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEE
T ss_pred             CCCCCC-ccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcce
Confidence            457777 99995  6899999999999999999999974448766 6765444

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.27  E-value=7.2e-05  Score=83.53  Aligned_cols=205  Identities=9%  Similarity=0.071  Sum_probs=138.2

Q ss_pred             cceEEEEEEcCCCEEEEEECCCC-----eEEEEEcCCCcceEEEcCCCC------------------------CcceeEE
Q psy952           45 LNVVAMDFHYKENRFYFADVAAK-----TIYRSRVGSTEKERVIRHDSH------------------------GLEGLAV   95 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~-----~I~~~~~~g~~~~~i~~~~~~------------------------~p~glav   95 (573)
                      ..+..++|.+.+++|+++....+     .|+.++++++....++.....                        .+..+++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW  116 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence            45789999999999999887444     899999987766555533211                        2578899


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCC---ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecC
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGT---NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE  172 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~---~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~  172 (573)
                      .+.++.|+++..  +.|.+.++++.   ..+.+......+..++++|...+|+++.   ...|+..++++.....+.  .
T Consensus       117 SpDg~~l~~~~~--~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~---~~~i~~~d~~~g~~~~~~--~  189 (741)
T 2ecf_A          117 SPDAQRLLFPLG--GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR---GRNLWVIDLASGRQMQLT--A  189 (741)
T ss_dssp             CTTSSEEEEEET--TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE---TTEEEEEETTTTEEEECC--C
T ss_pred             CCCCCEEEEEeC--CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe---CCcEEEEecCCCCEEEec--c
Confidence            998888998875  78999999887   5555555555688999999888888876   247999998876544433  1


Q ss_pred             CCC----------------CCCceEEEeccCCeEEEEeCCCC--------------------------------eEEEEe
Q psy952          173 DDI----------------AWPNALTLDYFTERLYWADAHLD--------------------------------YIASVD  204 (573)
Q Consensus       173 ~~l----------------~~P~glaiD~~~~~LYw~D~~~~--------------------------------~I~~~~  204 (573)
                      ...                ..+.++++.+++.+|+++.....                                .|+.++
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            111                12578999999999988743221                                677778


Q ss_pred             CCC-CcEEEEEeC-CccceeEEEee-eCCeEEEecC----CCCceEEEeccCCcceEEE
Q psy952          205 LDG-KHKHIVISG-QKVPHVFALTL-FEDHIYWTDW----NTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       205 ~dG-~~~~~l~~~-~~~~~p~~ia~-~~~~lywtd~----~~~~I~~~~~~~g~~~~~l  256 (573)
                      +++ ...+.+... .....+..+++ ++.+|+++..    ....|+..+..+|+...++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~  328 (741)
T 2ecf_A          270 PAEQAQTQWIDLGKEQDIYLARVNWRDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA  328 (741)
T ss_dssp             SSTTCCCEEECCCSCSSEEEEEEEEEETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred             CCCCCceEEecCCCCcceEEEEEEeCCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence            776 555444322 11123344444 5566776533    2346777777777655544

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.23  E-value=0.0013  Score=67.17  Aligned_cols=235  Identities=8%  Similarity=-0.079  Sum_probs=142.5

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      .+|.+......+|+.+. ...|+..+..+.....+......+.+|+|.+....|+.+. ..+.|..+++........+..
T Consensus       111 v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~  189 (425)
T 1r5m_A          111 VTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMD-VENVTILWNVISGTVMQHFEL  189 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTSSEEEEEE-TTCCEEEEETTTTEEEEEECC
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEeec
Confidence            34554443344666554 4578888866665555444456688999998777777665 456788888865443333322


Q ss_pred             CCCC---------------cceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee-EeccCCCCcceEEEeCCCceEEEEec
Q psy952           86 DSHG---------------LEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSW  149 (573)
Q Consensus        86 ~~~~---------------p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~-~l~~~~~~P~~Iavdp~~g~LYwtd~  149 (573)
                      ....               +..+++..  +..+++-...+.|.+.++...... .+.........|+++|...+|+.+. 
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-  266 (425)
T 1r5m_A          190 KETGGSSINAENHSGDGSLGVDVEWVD--DDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS-  266 (425)
T ss_dssp             C---------------CCCBSCCEEEE--TTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEE-
T ss_pred             cccCccceeeccccCCcceeeEEEEcC--CCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEc-
Confidence            2122               66777764  344566666788999998765433 3334445578999999766666655 


Q ss_pred             CCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-
Q psy952          150 NLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-  228 (573)
Q Consensus       150 ~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-  228 (573)
                       ....|...++........+  ...-.....+++.+.+  ++++-...+.|...++............ ...+..+++. 
T Consensus       267 -~d~~i~i~d~~~~~~~~~~--~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~s~  340 (425)
T 1r5m_A          267 -DDGTLRIWHGGNGNSQNCF--YGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVD-GVPIFAGRISQ  340 (425)
T ss_dssp             -TTSCEEEECSSSBSCSEEE--CCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECT-TCCEEEEEECT
T ss_pred             -CCCEEEEEECCCCccceEe--cCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccC-CccEEEEEEcC
Confidence             3556777776644333333  2333445788888655  5555556788999998755544334332 2456677774 


Q ss_pred             CCeEEEecCCCCceEEEeccCCc
Q psy952          229 EDHIYWTDWNTKSINRADKFNGR  251 (573)
Q Consensus       229 ~~~lywtd~~~~~I~~~~~~~g~  251 (573)
                      .+.++++-...+.|...+..++.
T Consensus       341 ~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          341 DGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             TSSEEEEEETTSCEEEEECHHHH
T ss_pred             CCCEEEEEECCCeEEEEECCCCc
Confidence            34455554456677766655444

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.21  E-value=0.0049  Score=61.10  Aligned_cols=227  Identities=15%  Similarity=0.111  Sum_probs=139.8

Q ss_pred             cccEEEEEcCCCceee--ccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC
Q psy952           24 KYYVRNMSLDATQYSL--VHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR  100 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~~--~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~  100 (573)
                      ...|+..++.......  .+. ....+.++++.+.. .+..+-...+.|+..++........+......+..+++.+.++
T Consensus        57 D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~  135 (321)
T 3ow8_A           57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ  135 (321)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS
T ss_pred             CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC
Confidence            4667777765543322  122 23457889998654 4555666677899999876544333433445677889987655


Q ss_pred             cEEEEeCCCCeEEEEEcCCCceeE-eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952          101 KLYWLDRHSKQLDVAELDGTNRKT-LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN  179 (573)
Q Consensus       101 ~LY~td~~~~~I~~~~ldg~~~~~-l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~  179 (573)
                      .| ++-...+.|.+.++....... +.........|+++|...+|....  ....|...++........+  ...-....
T Consensus       136 ~l-~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~--~dg~i~iwd~~~~~~~~~~--~~h~~~v~  210 (321)
T 3ow8_A          136 YL-ATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGA--IDGIINIFDIATGKLLHTL--EGHAMPIR  210 (321)
T ss_dssp             EE-EEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEE--CCCSSCCC
T ss_pred             EE-EEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEc--CCCeEEEEECCCCcEEEEE--cccCCcee
Confidence            44 455567889999987554433 334445578999999766666554  3456777776544332223  23333457


Q ss_pred             eEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       180 glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      .|++.+.+..|+ +-...+.|...++........+.+. ......|++. ++.++++-...+.|..-+..+++....+..
T Consensus       211 ~l~~spd~~~l~-s~s~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  288 (321)
T 3ow8_A          211 SLTFSPDSQLLV-TASDDGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFD  288 (321)
T ss_dssp             EEEECTTSCEEE-EECTTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEcCCCCEEE-EEcCCCeEEEEECCCcceeEEEcCC-CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcC
Confidence            899997655554 4456678888888765554444432 3456778874 445556655667777777666665555543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.21  E-value=0.00016  Score=71.78  Aligned_cols=219  Identities=16%  Similarity=0.167  Sum_probs=128.3

Q ss_pred             CCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952           16 KPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAV   95 (573)
Q Consensus        16 ~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glav   95 (573)
                      ...|+++... |++++.+|...............++++  ++.||+.. ..+.|++++.+|...... .........+++
T Consensus        70 ~g~l~v~t~~-l~~~d~~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t-~~~~l~~~d~~g~~~~~~-~~~~~~~~~~~~  144 (330)
T 3hxj_A           70 DGTIYFGSDK-VYAINPDGTEKWRFDTKKAIVSDFTIF--EDILYVTS-MDGHLYAINTDGTEKWRF-KTKKAIYATPIV  144 (330)
T ss_dssp             TTEECCSSCE-EEEECCCGGGGGGSCC-----CCEEEE--TTEEEEEC-TTSEEEEECTTSCEEEEE-ECSSCCCSCCEE
T ss_pred             CCcEEEecCc-EEEECCCCcEEEEEECCCCcccCceEE--CCEEEEEe-cCCEEEEEcCCCCEEEEE-cCCCceeeeeEE
Confidence            4456666555 888876554321111111111223333  77887764 456799999884332222 222234556677


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCC
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDI  175 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l  175 (573)
                      |. .++||+.. ..+.|.+++.+|.....+.........+++|+ .+.||++.    ..|.+.+.+|.....+.   ...
T Consensus       145 ~~-~g~l~vgt-~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~d~-~g~l~v~t----~~l~~~d~~g~~~~~~~---~~~  214 (330)
T 3hxj_A          145 SE-DGTIYVGS-NDNYLYAINPDGTEKWRFKTNDAITSAASIGK-DGTIYFGS----DKVYAINPDGTEKWNFY---AGY  214 (330)
T ss_dssp             CT-TSCEEEEC-TTSEEEEECTTSCEEEEEECSSCCCSCCEECT-TCCEEEES----SSEEEECTTSCEEEEEC---CSS
T ss_pred             cC-CCEEEEEc-CCCEEEEECCCCCEeEEEecCCCceeeeEEcC-CCEEEEEe----CEEEEECCCCcEEEEEc---cCC
Confidence            64 56787765 34689999988655433333333466788886 67888876    56888886665433222   233


Q ss_pred             CCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceE
Q psy952          176 AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYR  254 (573)
Q Consensus       176 ~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~  254 (573)
                      ....++++| .+++||++.. .+.|.+++.+|.....+....  ..+..+++. ++.||++.. .+.|+++++ +|+...
T Consensus       215 ~~~~~~~~~-~~g~l~v~t~-~~gl~~~~~~g~~~~~~~~~~--~~~~~~~~~~~g~l~v~t~-~ggl~~~d~-~g~~~~  288 (330)
T 3hxj_A          215 WTVTRPAIS-EDGTIYVTSL-DGHLYAINPDGTEKWRFKTGK--RIESSPVIGNTDTIYFGSY-DGHLYAINP-DGTEKW  288 (330)
T ss_dssp             CCCSCCEEC-TTSCEEEEET-TTEEEEECTTSCEEEEEECSS--CCCSCCEECTTSCEEEECT-TCEEEEECT-TSCEEE
T ss_pred             cceeceEEC-CCCeEEEEcC-CCeEEEECCCCCEeEEeeCCC--CccccceEcCCCeEEEecC-CCCEEEECC-CCcEEE
Confidence            446788888 4568988864 467888888776655444322  223345555 677887754 457888885 665443


Q ss_pred             E
Q psy952          255 V  255 (573)
Q Consensus       255 ~  255 (573)
                      .
T Consensus       289 ~  289 (330)
T 3hxj_A          289 N  289 (330)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.19  E-value=2.6e-07  Score=84.75  Aligned_cols=40  Identities=43%  Similarity=0.870  Sum_probs=33.5

Q ss_pred             CCCCCCCceecCC--CcccCCCcccCCCCCCCCCCCCCCCccC
Q psy952          408 RPCDKDTEFACRN--GHCIPKLWVCDFDNDCGDDSDEPAYMCR  448 (573)
Q Consensus       408 ~~C~~~~~f~C~~--g~ci~~~~~Cd~~~dC~d~sDE~~~~C~  448 (573)
                      ..|.+. +|+|.+  |.|||..|+|||.+||.|||||....|.
T Consensus        52 ~~C~~~-~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~   93 (217)
T 2gtl_M           52 HHCDEH-ESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS   93 (217)
T ss_dssp             CCCCTT-EEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHC
T ss_pred             CCCCCC-ceecCCCCCcEechhhccCCCCCCCCCCccccCcCC
Confidence            457777 999975  9999999999999999999999632254

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.19  E-value=4.1e-05  Score=83.08  Aligned_cols=188  Identities=9%  Similarity=0.029  Sum_probs=122.3

Q ss_pred             EEEEEe--cccEEEEEcCCCceeecccCC-cceEEEEEEcCCCEEEEEEC--C--CCeEEEEEc--CCCcceEEEcCCCC
Q psy952           18 WLIFSN--KYYVRNMSLDATQYSLVHQDL-LNVVAMDFHYKENRFYFADV--A--AKTIYRSRV--GSTEKERVIRHDSH   88 (573)
Q Consensus        18 ~l~~s~--~~~I~~i~l~g~~~~~~~~~~-~~~~~v~~d~~~~~ly~~d~--~--~~~I~~~~~--~g~~~~~i~~~~~~   88 (573)
                      .|+++.  ...+....+++.....+.... ..+.+++|.+. +.||+++.  .  ...|+++++  +|... .+.  ...
T Consensus        35 ~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~--~~~  110 (582)
T 3o4h_A           35 KLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLE--AVK  110 (582)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECT--TSC
T ss_pred             eEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-ccc--CCC
Confidence            455543  334444556666554443333 35778888876 77888886  2  237888888  66554 222  223


Q ss_pred             CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC--CcCeEEEEeccCCCcE
Q psy952           89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN--LQAYIGKIGMDGSNFT  166 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~--~~~~I~r~~ldG~~~~  166 (573)
                      ....+++.+.++.++++....+.+.+.++++...+.+.....  ..++++|...+|+++...  ....|++.++++...+
T Consensus       111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~  188 (582)
T 3o4h_A          111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  188 (582)
T ss_dssp             SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred             CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence            344567777777777665555566677888776666654322  789999988888876532  2257999998877766


Q ss_pred             EEEecCCCCCCCceEEEeccCCeEEEEeCCC-CeEEEEeCCCCcEEEEEe
Q psy952          167 RILTHEDDIAWPNALTLDYFTERLYWADAHL-DYIASVDLDGKHKHIVIS  215 (573)
Q Consensus       167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~l~~  215 (573)
                      .|.   ........+++.+++.+||.++... ..|+.+++++...+ ++.
T Consensus       189 ~l~---~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~  234 (582)
T 3o4h_A          189 VFD---SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLE  234 (582)
T ss_dssp             EEC---CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECC
T ss_pred             Eee---cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ecc
Confidence            654   3333457899999899999555432 38999999988777 443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.18  E-value=0.0045  Score=61.57  Aligned_cols=222  Identities=7%  Similarity=-0.040  Sum_probs=133.1

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCceee-cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSL-VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR   84 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~-~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~   84 (573)
                      .+|.+......+|+.+. ...|+..++....... +......+.+|+|.+.++.|+.+ ...+.|..+++........+.
T Consensus        35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~  113 (369)
T 3zwl_B           35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTG-SADYSIKLWDVSNGQCVATWK  113 (369)
T ss_dssp             EEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTTEEEEEETTTCCEEEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEee
Confidence            34554443334566554 4678888887554433 33344568899999866666554 456789999987655443443


Q ss_pred             CCCCCcceeEEeecCCcEEEEeCC----CCeEEEEEcCCCce------------eEecc--CCCCcceEEEeCCCceEEE
Q psy952           85 HDSHGLEGLAVDWVGRKLYWLDRH----SKQLDVAELDGTNR------------KTLKT--AIQDPRGITLHPGIGYVYF  146 (573)
Q Consensus        85 ~~~~~p~glavD~~~~~LY~td~~----~~~I~~~~ldg~~~------------~~l~~--~~~~P~~Iavdp~~g~LYw  146 (573)
                       .-..+..+++.+.+..|+.+...    .+.|.+.++.....            ..+..  .......++++|...+|+.
T Consensus       114 -~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  192 (369)
T 3zwl_B          114 -SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIA  192 (369)
T ss_dssp             -CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEE
T ss_pred             -cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEE
Confidence             33578889999877666665532    26788877654321            11111  2226788999996666666


Q ss_pred             EecCCcCeEEEEeccCC-CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEE
Q psy952          147 SSWNLQAYIGKIGMDGS-NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFAL  225 (573)
Q Consensus       147 td~~~~~~I~r~~ldG~-~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~i  225 (573)
                      ..  ..+.|...++... .....+  ...-.....|++.+.+..|+.+ ...+.|...++...........  ......+
T Consensus       193 ~~--~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~  265 (369)
T 3zwl_B          193 GH--KDGKISKYDVSNNYEYVDSI--DLHEKSISDMQFSPDLTYFITS-SRDTNSFLVDVSTLQVLKKYET--DCPLNTA  265 (369)
T ss_dssp             EE--TTSEEEEEETTTTTEEEEEE--ECCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEEEEC--SSCEEEE
T ss_pred             Ec--CCCEEEEEECCCCcEeEEEE--ecCCCceeEEEECCCCCEEEEe-cCCceEEEEECCCCceeeeecC--CCCceeE
Confidence            55  3567888887752 222222  2333455789998766666555 4567888888876554443332  2344555


Q ss_pred             ee--eCCeEEEecC
Q psy952          226 TL--FEDHIYWTDW  237 (573)
Q Consensus       226 a~--~~~~lywtd~  237 (573)
                      ++  .+..|+.+..
T Consensus       266 ~~~~~~~~l~~~~~  279 (369)
T 3zwl_B          266 VITPLKEFIILGGG  279 (369)
T ss_dssp             EECSSSSEEEEEEC
T ss_pred             EecCCCceEEEeec
Confidence            55  3444555443

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.17  E-value=0.0005  Score=69.31  Aligned_cols=221  Identities=8%  Similarity=-0.043  Sum_probs=136.7

Q ss_pred             CEEEEE-ecccEEEEEcCCCcee-e---cc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           17 PWLIFS-NKYYVRNMSLDATQYS-L---VH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        17 ~~l~~s-~~~~I~~i~l~g~~~~-~---~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      ..|+.+ ....|+..++...+.. .   .. .....+.+|+|.+.++.|+ +-...+.|...++........+......+
T Consensus        94 ~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~-sgs~d~~i~iwd~~~~~~~~~~~~h~~~V  172 (344)
T 4gqb_B           94 RGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAV-SGSKDICIKVWDLAQQVVLSSYRAHAAQV  172 (344)
T ss_dssp             TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEE-EEeCCCeEEEEECCCCcEEEEEcCcCCce
Confidence            444444 3567888888654321 1   11 2234588999998655554 44566789999987654433343334678


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC-CCcE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG-SNFT  166 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG-~~~~  166 (573)
                      ..+++.+.+..++++-...+.|.+.++.... ...+.  .....+..+++.|..+.++.+-. ....|...++.. ....
T Consensus       173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~-~dg~v~~wd~~~~~~~~  251 (344)
T 4gqb_B          173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD-ENGTVSLVDTKSTSCVL  251 (344)
T ss_dssp             EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE-TTSEEEEEESCC--CCE
T ss_pred             EEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec-cCCcEEEEECCCCcEEE
Confidence            8899988787888887778899999986443 33333  23334789999998887777642 356677777653 3333


Q ss_pred             EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee--CCeEEEecCCCCceEE
Q psy952          167 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINR  244 (573)
Q Consensus       167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~  244 (573)
                      .+.   ..-.....|++.+.+.++..+-...+.|...++.......+ .+. .....+|++.  +.+|+.+-...++|..
T Consensus       252 ~~~---~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~-~~H-~~~V~~v~~sp~~~~llas~s~D~~v~~  326 (344)
T 4gqb_B          252 SSA---VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAH-RDFVRDATWSPLNHSLLTTVGWDHQVVH  326 (344)
T ss_dssp             EEE---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE-CCC-SSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             EEc---CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE-cCC-CCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence            443   23334578899877766666656677888888765543322 221 3346777763  4556666545555543

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.17  E-value=1.2e-06  Score=93.43  Aligned_cols=50  Identities=34%  Similarity=0.806  Sum_probs=39.5

Q ss_pred             CCCCCCcCCCceeeC-CCCceecCCcCcCCCCCCCCCCCCCCCCCCCC-----CCCCCCC
Q psy952          519 CPSNITCPPHHLKCA-NTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR-----TCPQNSF  572 (573)
Q Consensus       519 C~~~~~C~~~~f~C~-~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~~-----~c~~~~f  572 (573)
                      |+....|. ++|+|. +| +|||..|+|||++||+|+|||.  +|...     .|...+|
T Consensus        60 c~~~~~c~-~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sDE~--~C~~~~~~~~~C~~~~~  115 (554)
T 3ojy_A           60 CVRQAQCG-QDFQCKETG-RCLKRHLVCNGDQDCLDGSDED--DCEDVRAIDEDCSQYEP  115 (554)
T ss_dssp             C--CCCCS-SSEECSSSC-CEECGGGTTSSSCCSSSCTTSS--SCCSCCCCCTTTTTSCB
T ss_pred             CcccCCCC-CcCccCCCC-EEcccccccCCcccCCCccccc--cCCCCCCCccccccccc
Confidence            43334563 799999 88 9999999999999999999999  89753     4876554

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.17  E-value=0.0014  Score=66.44  Aligned_cols=195  Identities=11%  Similarity=-0.003  Sum_probs=125.4

Q ss_pred             CceeeCCCCC-CEEEEEe-cccEEEEEcCCCceeeccc---CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE
Q psy952            7 STCKRRDSIK-PWLIFSN-KYYVRNMSLDATQYSLVHQ---DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER   81 (573)
Q Consensus         7 ~~C~~~~~~~-~~l~~s~-~~~I~~i~l~g~~~~~~~~---~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~   81 (573)
                      .+|.+..... .+|+.+. ...|+..++..........   ....+.+|+|.+.++.++++-...+.|..+++.+.....
T Consensus        76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~  155 (383)
T 3ei3_B           76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQV  155 (383)
T ss_dssp             EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEE
T ss_pred             EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEE
Confidence            3455443222 3555544 4689999998655443322   345688999998666666666677899999998755444


Q ss_pred             EEcCC--CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952           82 VIRHD--SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIG  159 (573)
Q Consensus        82 i~~~~--~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~  159 (573)
                      +....  ...+..|++.+.++.|+.+ ...+.|.+.++.+.....+.........|+++|...+++++-. ....|...+
T Consensus       156 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-~d~~i~iwd  233 (383)
T 3ei3_B          156 FAKTDSWDYWYCCVDVSVSRQMLATG-DSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS-VDATVKLWD  233 (383)
T ss_dssp             EECCCCSSCCEEEEEEETTTTEEEEE-ETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEE-TTSEEEEEE
T ss_pred             EeccCCCCCCeEEEEECCCCCEEEEE-CCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEe-CCCEEEEEe
Confidence            43322  1457889998766655544 4568999999987776666666667899999997663555542 355677777


Q ss_pred             ccC----CCcEEEEecCCCCCCCceEEEec-cCCeEEEEeCCCCeEEEEeCCC
Q psy952          160 MDG----SNFTRILTHEDDIAWPNALTLDY-FTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       160 ldG----~~~~~l~~~~~~l~~P~glaiD~-~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      +..    .......   ..-.....|++++ .+..|+.+ ...+.|...++..
T Consensus       234 ~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~l~~~-~~d~~i~iwd~~~  282 (383)
T 3ei3_B          234 LRNIKDKNSYIAEM---PHEKPVNAAYFNPTDSTKLLTT-DQRNEIRVYSSYD  282 (383)
T ss_dssp             GGGCCSTTCEEEEE---ECSSCEEEEEECTTTSCEEEEE-ESSSEEEEEETTB
T ss_pred             CCCCCcccceEEEe---cCCCceEEEEEcCCCCCEEEEE-cCCCcEEEEECCC
Confidence            653    1122222   2234557899998 55555544 4567888888764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.16  E-value=0.00039  Score=68.85  Aligned_cols=209  Identities=13%  Similarity=0.133  Sum_probs=126.3

Q ss_pred             CEEEEEe-cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952           17 PWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAV   95 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glav   95 (573)
                      ..|+++. ...|++++..|...-........+..+.++. ++.||+.. ..+.|++++.+|.....+. ........+++
T Consensus       108 ~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~-~g~l~vgt-~~~~l~~~d~~g~~~~~~~-~~~~~~~~~~~  184 (330)
T 3hxj_A          108 DILYVTSMDGHLYAINTDGTEKWRFKTKKAIYATPIVSE-DGTIYVGS-NDNYLYAINPDGTEKWRFK-TNDAITSAASI  184 (330)
T ss_dssp             TEEEEECTTSEEEEECTTSCEEEEEECSSCCCSCCEECT-TSCEEEEC-TTSEEEEECTTSCEEEEEE-CSSCCCSCCEE
T ss_pred             CEEEEEecCCEEEEEcCCCCEEEEEcCCCceeeeeEEcC-CCEEEEEc-CCCEEEEECCCCCEeEEEe-cCCCceeeeEE
Confidence            4455555 4678888887443211111222234455663 56677754 4468999998843332222 22345667788


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCC
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDI  175 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l  175 (573)
                      |. .++||++.   +.|.+++.+|............+.++++++ .|.||+...  ...|.+.+.+|.....+.   ..-
T Consensus       185 d~-~g~l~v~t---~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~-~g~l~v~t~--~~gl~~~~~~g~~~~~~~---~~~  254 (330)
T 3hxj_A          185 GK-DGTIYFGS---DKVYAINPDGTEKWNFYAGYWTVTRPAISE-DGTIYVTSL--DGHLYAINPDGTEKWRFK---TGK  254 (330)
T ss_dssp             CT-TCCEEEES---SSEEEECTTSCEEEEECCSSCCCSCCEECT-TSCEEEEET--TTEEEEECTTSCEEEEEE---CSS
T ss_pred             cC-CCEEEEEe---CEEEEECCCCcEEEEEccCCcceeceEECC-CCeEEEEcC--CCeEEEECCCCCEeEEee---CCC
Confidence            74 67788887   779988876665444443445578899998 578988873  457888877776554443   222


Q ss_pred             CCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEecCCCCceE
Q psy952          176 AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTDWNTKSIN  243 (573)
Q Consensus       176 ~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd~~~~~I~  243 (573)
                      ..+..+++| .+++||++.. .+.|.+++.+|.....+...  -....++.+ .++.||+... .+.|.
T Consensus       255 ~~~~~~~~~-~~g~l~v~t~-~ggl~~~d~~g~~~~~~~~~--~~~~~~~~~d~~g~l~~gt~-~G~~~  318 (330)
T 3hxj_A          255 RIESSPVIG-NTDTIYFGSY-DGHLYAINPDGTEKWNFETG--SWIIATPVIDENGTIYFGTR-NGKFY  318 (330)
T ss_dssp             CCCSCCEEC-TTSCEEEECT-TCEEEEECTTSCEEEEEECS--SCCCSCCEECTTCCEEEECT-TSCEE
T ss_pred             CccccceEc-CCCeEEEecC-CCCEEEECCCCcEEEEEEcC--CccccceEEcCCCEEEEEcC-CCeEE
Confidence            334567776 5778888764 45789998877655443322  123445555 4667777643 34443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.15  E-value=0.00011  Score=79.70  Aligned_cols=206  Identities=10%  Similarity=-0.014  Sum_probs=127.7

Q ss_pred             cEEEEEc--CCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952           26 YVRNMSL--DATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY  103 (573)
Q Consensus        26 ~I~~i~l--~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY  103 (573)
                      .|+.+++  ++....+..  ......+++.+..+.++++....+.+..++++++..+.+....  . ..+++++.++.|+
T Consensus        91 ~l~~~~~~~~g~~~~l~~--~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~--~-~~~~~spDG~~la  165 (582)
T 3o4h_A           91 ALFKVNTSRPGEEQRLEA--VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP--G-FGFVSDIRGDLIA  165 (582)
T ss_dssp             EEEEEETTSTTCCEECTT--SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES--S-CEEEEEEETTEEE
T ss_pred             EEEEEeccCCCccccccC--CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC--C-ceEEECCCCCEEE
Confidence            6777888  666553322  2223344666666666666555445557788776655555432  2 7889999999998


Q ss_pred             EEeCC---CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCce
Q psy952          104 WLDRH---SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNA  180 (573)
Q Consensus       104 ~td~~---~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~g  180 (573)
                      ++...   ...|++.++++...+.|.........+++.|...+||.++......|++.++++...+ ++  ...-..+.+
T Consensus       166 ~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~--~~~~~~~~~  242 (582)
T 3o4h_A          166 GLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL--ELPSKDFSS  242 (582)
T ss_dssp             EEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC--CCSCSHHHH
T ss_pred             EEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec--cCCCcChhh
Confidence            76432   2579999998777777765555578999999888888555333348999999987766 44  222223345


Q ss_pred             EE--------EeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecC---CCCceEEEe
Q psy952          181 LT--------LDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW---NTKSINRAD  246 (573)
Q Consensus       181 la--------iD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~---~~~~I~~~~  246 (573)
                      ++        +++++ +||++-...+++....+ |...+    .. .....++++.++.++++-.   ....|+.++
T Consensus       243 ~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~-g~~~~----~~-~~~v~~~~~sdg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          243 YRPTAITWLGYLPDG-RLAVVARREGRSAVFID-GERVE----AP-QGNHGRVVLWRGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             HCCSEEEEEEECTTS-CEEEEEEETTEEEEEET-TEEEC----CC-SSEEEEEEEETTEEEEEEEETTEEEEEEEET
T ss_pred             hhhccccceeEcCCC-cEEEEEEcCCcEEEEEE-CCeec----cC-CCceEEEEecCCEEEEEEcCCCCCCeEEEEc
Confidence            55        88766 88877666677776677 53222    11 2244556655555555422   223455554

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.14  E-value=0.00043  Score=70.82  Aligned_cols=230  Identities=7%  Similarity=0.006  Sum_probs=141.7

Q ss_pred             cccEEEEEcCCCce---eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC----CcceEEEcCCCCCcceeEEe
Q psy952           24 KYYVRNMSLDATQY---SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS----TEKERVIRHDSHGLEGLAVD   96 (573)
Q Consensus        24 ~~~I~~i~l~g~~~---~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g----~~~~~i~~~~~~~p~glavD   96 (573)
                      ...|+..++.....   .........+..|+|.+....|+.+. ..+.|..+++..    ......+......+..|++.
T Consensus        44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~  122 (416)
T 2pm9_A           44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGAL-DNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN  122 (416)
T ss_dssp             CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEE-SSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred             CCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEc-cCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence            35688888875432   12223345688999998766665554 456788888875    11222233334577889998


Q ss_pred             ecCCcEEEEeCCCCeEEEEEcCCCc------eeEec----cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           97 WVGRKLYWLDRHSKQLDVAELDGTN------RKTLK----TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        97 ~~~~~LY~td~~~~~I~~~~ldg~~------~~~l~----~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      +.+++++++-...+.|.+.++....      ....+    ........|+++|..+.++++-. ....|...++......
T Consensus       123 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~  201 (416)
T 2pm9_A          123 AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG-SSNFASIWDLKAKKEV  201 (416)
T ss_dssp             SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES-SSSCEEEEETTTTEEE
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc-CCCCEEEEECCCCCcc
Confidence            7756677776677899999987654      22111    23445889999997566666642 3567888887655443


Q ss_pred             EEEecCCC------CCCCceEEEeccCCeEEEEeCCCC---eEEEEeCCCC-cEEEEEe-CCccceeEEEeee--CCeEE
Q psy952          167 RILTHEDD------IAWPNALTLDYFTERLYWADAHLD---YIASVDLDGK-HKHIVIS-GQKVPHVFALTLF--EDHIY  233 (573)
Q Consensus       167 ~l~~~~~~------l~~P~glaiD~~~~~LYw~D~~~~---~I~~~~~dG~-~~~~l~~-~~~~~~p~~ia~~--~~~ly  233 (573)
                      ..+  ...      -.....|++.+.+..++++-...+   .|...++... ....... +. ......|++.  ++.++
T Consensus       202 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~~l  278 (416)
T 2pm9_A          202 IHL--SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH-QKGILSLDWCHQDEHLL  278 (416)
T ss_dssp             EEE--CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC-SSCEEEEEECSSCSSCE
T ss_pred             eEE--eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc-cCceeEEEeCCCCCCeE
Confidence            333  222      344678999987766666555555   7888887653 2211222 21 3456778773  45666


Q ss_pred             EecCCCCceEEEeccCCcceEEEcc
Q psy952          234 WTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       234 wtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      ++-...+.|...+..+++....+..
T Consensus       279 ~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          279 LSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             EEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             EEEeCCCCEEEeeCCCCccceeecC
Confidence            6655667787777667765555543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.14  E-value=0.00028  Score=71.47  Aligned_cols=234  Identities=9%  Similarity=-0.035  Sum_probs=136.4

Q ss_pred             CceeeCCCCCCEEEEEecccEEEEEcCCCceee----cc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE
Q psy952            7 STCKRRDSIKPWLIFSNKYYVRNMSLDATQYSL----VH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER   81 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~----~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~   81 (573)
                      .++.+......+|.-+....|+..++.......    .. .....+..|+|.+....|.. -...+.|+..++.......
T Consensus        97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s-gs~dg~v~iwd~~~~~~~~  175 (357)
T 4g56_B           97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVS-GGKDFSVKVWDLSQKAVLK  175 (357)
T ss_dssp             EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEE-EETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEE-EeCCCeEEEEECCCCcEEE
Confidence            344443322334443445667776765432211    11 12345789999986665554 4456788888987654443


Q ss_pred             EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec---cCCCCcceEEEeCCCceEEEEecCCcCeEEEE
Q psy952           82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK---TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI  158 (573)
Q Consensus        82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~---~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~  158 (573)
                      .+......+..|++.+.++.++++-...+.|.+.++........+   .....+..|++.|..+.++.+-. ....|...
T Consensus       176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~-~d~~i~~w  254 (357)
T 4g56_B          176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD-ETGNVSLV  254 (357)
T ss_dssp             EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE-SSSCEEEE
T ss_pred             EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee-cccceeEE
Confidence            444444678889998777778888777888998887654332222   23334789999998777776642 34567777


Q ss_pred             eccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee--CCeEEEec
Q psy952          159 GMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF--EDHIYWTD  236 (573)
Q Consensus       159 ~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--~~~lywtd  236 (573)
                      ++........+  ...-.....|++.+.++++..+-...+.|...+++......+. +. .....+|++.  ++.++.|-
T Consensus       255 d~~~~~~~~~~--~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H-~~~V~~vafsP~d~~~l~s~  330 (357)
T 4g56_B          255 NIKNPDSAQTS--AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SH-RDFVTGVAWSPLDHSKFTTV  330 (357)
T ss_dssp             ESSCGGGCEEE--CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CC-SSCEEEEEECSSSTTEEEEE
T ss_pred             ECCCCcEeEEE--eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CC-CCCEEEEEEeCCCCCEEEEE
Confidence            66543332223  2233344788988777666665556678888888755433222 21 2356788873  46666665


Q ss_pred             CCCCceEEEe
Q psy952          237 WNTKSINRAD  246 (573)
Q Consensus       237 ~~~~~I~~~~  246 (573)
                      ...+.|..-+
T Consensus       331 s~Dg~v~iW~  340 (357)
T 4g56_B          331 GWDHKVLHHH  340 (357)
T ss_dssp             ETTSCEEEEE
T ss_pred             cCCCeEEEEE
Confidence            5566666544

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.14  E-value=0.00043  Score=71.93  Aligned_cols=219  Identities=8%  Similarity=0.050  Sum_probs=138.7

Q ss_pred             cccEEEEEcCC-----------CceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-------eEEEcC
Q psy952           24 KYYVRNMSLDA-----------TQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-------ERVIRH   85 (573)
Q Consensus        24 ~~~I~~i~l~g-----------~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-------~~i~~~   85 (573)
                      ...|+.+++..           .....+......+.+|+|++....++++-...+.|..+++.....       ...+..
T Consensus       150 dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~  229 (430)
T 2xyi_A          150 SSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG  229 (430)
T ss_dssp             SSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC
T ss_pred             CCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC
Confidence            45677777753           111122223345789999987775677777788899999875211       122222


Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC----ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT----NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~----~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      ....+..|++.+..++++++....+.|.+.++...    ....+......++.|+++|...++|++-. ..+.|...++.
T Consensus       230 h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~-~dg~v~vwd~~  308 (430)
T 2xyi_A          230 HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGS-ADKTVALWDLR  308 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETT
T ss_pred             CCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEe-CCCeEEEEeCC
Confidence            33568889998878889999888899999998754    22233344456899999997777777753 35678888776


Q ss_pred             CC--CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc-------------EEEEEeCCccceeEEEe
Q psy952          162 GS--NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH-------------KHIVISGQKVPHVFALT  226 (573)
Q Consensus       162 G~--~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~-------------~~~l~~~~~~~~p~~ia  226 (573)
                      ..  ....+.   ..-.....|++.+.+..|+++-...+.|...++....             ..+.........+..++
T Consensus       309 ~~~~~~~~~~---~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  385 (430)
T 2xyi_A          309 NLKLKLHSFE---SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFS  385 (430)
T ss_dssp             CTTSCSEEEE---CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEE
T ss_pred             CCCCCeEEee---cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEE
Confidence            42  233333   3334567899998887888887777888777775411             11112111134577787


Q ss_pred             eeC--CeEEEecCCCCceEEEe
Q psy952          227 LFE--DHIYWTDWNTKSINRAD  246 (573)
Q Consensus       227 ~~~--~~lywtd~~~~~I~~~~  246 (573)
                      +..  .+++++-...+.|...+
T Consensus       386 ~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          386 WNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             ECSSSTTEEEEEETTSEEEEEE
T ss_pred             ECCCCCCEEEEEECCCCEEEeE
Confidence            743  33666655666555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.13  E-value=0.0035  Score=70.31  Aligned_cols=248  Identities=10%  Similarity=-0.003  Sum_probs=153.5

Q ss_pred             CCceeeCCCCCCEEEEEe-cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE
Q psy952            6 ESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI   83 (573)
Q Consensus         6 g~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~   83 (573)
                      ..+|.+.....++|+.+. .+.|+..++..... ..+......+.+++|.+.++.|..+.. .+.|..+++........+
T Consensus        15 ~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~   93 (814)
T 3mkq_A           15 RVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-DFRIRVFNYNTGEKVVDF   93 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-TSEEEEEETTTCCEEEEE
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-CCeEEEEECCCCcEEEEE
Confidence            345555554556777765 45788888765433 333334456889999998777777654 678999998765543334


Q ss_pred             cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC-ce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952           84 RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT-NR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus        84 ~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~-~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      ......+..|++.+.+..|+.+. ..+.|.+.++... .. .++.........++++|..+.++++-. ....|...++.
T Consensus        94 ~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~v~vwd~~  171 (814)
T 3mkq_A           94 EAHPDYIRSIAVHPTKPYVLSGS-DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLG  171 (814)
T ss_dssp             ECCSSCEEEEEECSSSSEEEEEE-TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE-TTSEEEEEETT
T ss_pred             ecCCCCEEEEEEeCCCCEEEEEc-CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe-CCCeEEEEECC
Confidence            43446788899988776666554 5678999998764 32 223344455789999995555555442 35678777776


Q ss_pred             CCC-cEEEEecCCCCCCCceEEEecc-CCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCC
Q psy952          162 GSN-FTRILTHEDDIAWPNALTLDYF-TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWN  238 (573)
Q Consensus       162 G~~-~~~l~~~~~~l~~P~glaiD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~  238 (573)
                      ... ...+.  .........+++.+. ++.++++-...+.|...++..........+. ......+++. .+.++++-..
T Consensus       172 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~  248 (814)
T 3mkq_A          172 QSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSE  248 (814)
T ss_dssp             CSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEET
T ss_pred             CCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEeC
Confidence            443 33343  233345678888761 3444445456778888887755443333332 3445677764 3445555555


Q ss_pred             CCceEEEeccCCcceEEEccc
Q psy952          239 TKSINRADKFNGRDYRVLRNT  259 (573)
Q Consensus       239 ~~~I~~~~~~~g~~~~~l~~~  259 (573)
                      .+.|...+..++.....+...
T Consensus       249 dg~v~vwd~~~~~~~~~~~~~  269 (814)
T 3mkq_A          249 DGTLKIWNSSTYKVEKTLNVG  269 (814)
T ss_dssp             TSCEEEEETTTCSEEEEECCS
T ss_pred             CCeEEEEECCCCcEEEEeecC
Confidence            677777776666655555443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.13  E-value=0.0017  Score=66.17  Aligned_cols=244  Identities=7%  Similarity=-0.050  Sum_probs=142.8

Q ss_pred             CCCceeeCCCCCC-EEEEEec-ccEEEEEc----CCCc------ee-eccc----------CCcceEEEEEEcCCCEEEE
Q psy952            5 DESTCKRRDSIKP-WLIFSNK-YYVRNMSL----DATQ------YS-LVHQ----------DLLNVVAMDFHYKENRFYF   61 (573)
Q Consensus         5 dg~~C~~~~~~~~-~l~~s~~-~~I~~i~l----~g~~------~~-~~~~----------~~~~~~~v~~d~~~~~ly~   61 (573)
                      +..+|.+...... +|+.+.. ..|+..++    ....      .. .+..          ....+..|+|.+..+.|+.
T Consensus        46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  125 (425)
T 1r5m_A           46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT  125 (425)
T ss_dssp             SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred             CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence            3455555543334 6666554 66888888    5443      11 1111          1236889999986666665


Q ss_pred             EECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE-eccCCCC---------
Q psy952           62 ADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT-LKTAIQD---------  131 (573)
Q Consensus        62 ~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~-l~~~~~~---------  131 (573)
                      +. ..+.|..++.++.....+ ......+..|++.+.++.|+.+. ..+.|.+.++....... +......         
T Consensus       126 ~~-~dg~i~i~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (425)
T 1r5m_A          126 GV-ENGELRLWNKTGALLNVL-NFHRAPIVSVKWNKDGTHIISMD-VENVTILWNVISGTVMQHFELKETGGSSINAENH  202 (425)
T ss_dssp             EE-TTSCEEEEETTSCEEEEE-CCCCSCEEEEEECTTSSEEEEEE-TTCCEEEEETTTTEEEEEECCC------------
T ss_pred             Ee-CCCeEEEEeCCCCeeeec-cCCCccEEEEEECCCCCEEEEEe-cCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence            54 456788888666544433 33345788899987666666655 46789998986544332 2222122         


Q ss_pred             ------cceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952          132 ------PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL  205 (573)
Q Consensus       132 ------P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~  205 (573)
                            ...+++.+. +.++...  ....|...++........+  ...-.....|++.+.+..|+.+. ..+.|...++
T Consensus       203 ~~~~~~~~~~~~~~~-~~~~~~~--~~g~i~~~d~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~i~d~  276 (425)
T 1r5m_A          203 SGDGSLGVDVEWVDD-DKFVIPG--PKGAIFVYQITEKTPTGKL--IGHHGPISVLEFNDTNKLLLSAS-DDGTLRIWHG  276 (425)
T ss_dssp             ---CCCBSCCEEEET-TEEEEEC--GGGCEEEEETTCSSCSEEE--CCCSSCEEEEEEETTTTEEEEEE-TTSCEEEECS
T ss_pred             cCCcceeeEEEEcCC-CEEEEEc--CCCeEEEEEcCCCceeeee--ccCCCceEEEEECCCCCEEEEEc-CCCEEEEEEC
Confidence                  677888874 5554443  3567877777654433333  23333457889987666555554 5677888887


Q ss_pred             CCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          206 DGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       206 dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      ............ ......|++..+.++++-...+.|...+..+++....+..
T Consensus       277 ~~~~~~~~~~~~-~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  328 (425)
T 1r5m_A          277 GNGNSQNCFYGH-SQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIV  328 (425)
T ss_dssp             SSBSCSEEECCC-SSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCccceEecCC-CccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEeccc
Confidence            654433333322 3456777775443666666677888887766665555443

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.10  E-value=2.1e-06  Score=91.65  Aligned_cols=46  Identities=46%  Similarity=1.093  Sum_probs=37.6

Q ss_pred             CCCCCCcCCCceeeC-CCCceecCCcCcCCCCCCCCCCCCCCCCCCC--CCCCC
Q psy952          519 CPSNITCPPHHLKCA-NTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ--RTCPQ  569 (573)
Q Consensus       519 C~~~~~C~~~~f~C~-~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~--~~c~~  569 (573)
                      |+....|  .+|+|. +| +||+..|+|||++||+|+|||.  +|..  ..|..
T Consensus        62 C~~~~~c--~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sdE~--~c~~~~~~C~~  110 (537)
T 3ojy_B           62 CRSQVRC--EGFVCAQTG-RCVNRRLLCNGDNDCGDQSDEA--NCRRIYKKCQH  110 (537)
T ss_dssp             CCCCSCC--SSEECTTTC-CEECGGGTTSSSCCSSSSCTTS--SCSSCSSCCSS
T ss_pred             cccCCCC--CccCcCCCC-cEeeccccCCCCCCCCCccccc--cCCCCCCcccc
Confidence            3333456  789999 88 9999999999999999999999  8864  45644

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.10  E-value=0.0033  Score=64.32  Aligned_cols=239  Identities=9%  Similarity=0.034  Sum_probs=145.4

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cceEEEc
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EKERVIR   84 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~i~~   84 (573)
                      ++.+......+|+.+. ...|+.+++..... ..+......+..++|+  .+ ++++-...+.|..+++... .....+.
T Consensus       138 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~  214 (401)
T 4aez_A          138 ASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIANHQIGTLQ  214 (401)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CC-EEEEEcCCCCEEEEecccCcceeeEEc
Confidence            3444433334565554 56788888875543 3333344557888886  33 5555556788999998743 3222333


Q ss_pred             CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee-EeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccC
Q psy952           85 HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDG  162 (573)
Q Consensus        85 ~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~-~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG  162 (573)
                      .....+.+|++.+.+ .++++-...+.|.+.++...... .+.........|+++|....|+.+..+ ....|...++..
T Consensus       215 ~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~  293 (401)
T 4aez_A          215 GHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT  293 (401)
T ss_dssp             CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred             CCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence            334678889998744 44455445678999998764433 343455668999999988888887632 366788888875


Q ss_pred             CCcEEEEecCCCCCCCceEEEeccCCeEEEEeC-CCCeEEEEeCCCCcEEEEE--eCCccceeEEEeee-CCeEEEecCC
Q psy952          163 SNFTRILTHEDDIAWPNALTLDYFTERLYWADA-HLDYIASVDLDGKHKHIVI--SGQKVPHVFALTLF-EDHIYWTDWN  238 (573)
Q Consensus       163 ~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~l~--~~~~~~~p~~ia~~-~~~lywtd~~  238 (573)
                      ......+   ..-.....+++.+.+..|+.+.. ..+.|...++.......+.  .+. ......+++. ++.++++-..
T Consensus       294 ~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          294 GARVNTV---DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH-DTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             CCEEEEE---ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC-SSCCCEEEECTTSSEEEEECT
T ss_pred             CCEEEEE---eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC-CCCEEEEEECCCCCEEEEEeC
Confidence            5444433   22234678999987777777643 5677888887654433332  222 3455677774 3445555556


Q ss_pred             CCceEEEeccCCcceE
Q psy952          239 TKSINRADKFNGRDYR  254 (573)
Q Consensus       239 ~~~I~~~~~~~g~~~~  254 (573)
                      .+.|...+..+++...
T Consensus       370 dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          370 DENLKFWRVYDGDHVK  385 (401)
T ss_dssp             TSEEEEEECCC-----
T ss_pred             CCcEEEEECCCCcccc
Confidence            6777777766665443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=98.10  E-value=0.00052  Score=68.52  Aligned_cols=206  Identities=11%  Similarity=0.058  Sum_probs=122.8

Q ss_pred             cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC----CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecC
Q psy952           24 KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA----AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVG   99 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~----~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~   99 (573)
                      ...|+.+++++.....+    ..+..++|.+.+++|+++...    ...|+.++++++....+.... . +.++++.+.+
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg  115 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDS  115 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTS
T ss_pred             cceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCC
Confidence            34688888887665444    456788999999888887643    235999999876655554433 2 6778887778


Q ss_pred             CcEEEEeCC--------------------------CCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEecCC-
Q psy952          100 RKLYWLDRH--------------------------SKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNL-  151 (573)
Q Consensus       100 ~~LY~td~~--------------------------~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-  151 (573)
                      +.|+++...                          ...|++.++.+... +.+.. - ....+++.|.. .+|.+.... 
T Consensus       116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~  192 (347)
T 2gop_A          116 RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREI  192 (347)
T ss_dssp             SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCS
T ss_pred             CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccc
Confidence            888887421                          35788899987665 44444 2 77889999955 555554321 


Q ss_pred             ------cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC-------CCeEEEEeCCCCcEEEEEeCCc
Q psy952          152 ------QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH-------LDYIASVDLDGKHKHIVISGQK  218 (573)
Q Consensus       152 ------~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~-------~~~I~~~~~dG~~~~~l~~~~~  218 (573)
                            ...|+.++ .|. .+.+.  ..  . . -..+.+.+.+|+++...       ...|+.++ .|. .+.+.... 
T Consensus       193 ~~~~~~~~~l~~~d-~~~-~~~l~--~~--~-~-~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~~-  261 (347)
T 2gop_A          193 IPQYFKFWDIYIWE-DGK-EEKMF--EK--V-S-FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GKE-VMGILDEV-  261 (347)
T ss_dssp             SCCSSCCEEEEEEE-TTE-EEEEE--EE--E-S-EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SSC-EEESSTTC-
T ss_pred             cccccccccEEEeC-CCc-eEEec--cC--c-c-eeeECCCCCEEEEEEccccCCccccceEEEEC-CCc-eEeccccC-
Confidence                  33677777 443 33444  22  1 1 12336677788776533       35788888 443 33333221 


Q ss_pred             cceeEE-EeeeCCeEEEecCC--CCceEEEeccCCcce
Q psy952          219 VPHVFA-LTLFEDHIYWTDWN--TKSINRADKFNGRDY  253 (573)
Q Consensus       219 ~~~p~~-ia~~~~~lywtd~~--~~~I~~~~~~~g~~~  253 (573)
                      -..... +++. +.||++-..  ...|+ ++  +|+..
T Consensus       262 ~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~--~g~~~  295 (347)
T 2gop_A          262 DRGVGQAKIKD-GKVYFTLFEEGSVNLY-IW--DGEIK  295 (347)
T ss_dssp             CSEEEEEEEET-TEEEEEEEETTEEEEE-EE--SSSEE
T ss_pred             CcccCCccEEc-CcEEEEEecCCcEEEE-Ec--CCceE
Confidence            122333 4444 446665333  33455 55  45443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.09  E-value=0.00076  Score=66.88  Aligned_cols=240  Identities=8%  Similarity=-0.022  Sum_probs=139.9

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCc----eeecccCCcceEEEEEEcCCC-EEEEEECCCCeEEEEEc-CCCcc
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQ----YSLVHQDLLNVVAMDFHYKEN-RFYFADVAAKTIYRSRV-GSTEK   79 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~----~~~~~~~~~~~~~v~~d~~~~-~ly~~d~~~~~I~~~~~-~g~~~   79 (573)
                      .+|.+......+|+.+. ...|+..++....    ..........+..++|.+..+ .|+.+. ..+.|+.+++ .+...
T Consensus        14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~   92 (342)
T 1yfq_A           14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT-VQGEILKVDLIGSPSF   92 (342)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE-TTSCEEEECSSSSSSE
T ss_pred             EEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc-CCCeEEEEEeccCCce
Confidence            34444332234555554 4678888876554    333334445688999998766 566554 5678999998 76655


Q ss_pred             eEEEcC--CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC---------CceeEeccCCCCcceEEEeCCCceEEEEe
Q psy952           80 ERVIRH--DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG---------TNRKTLKTAIQDPRGITLHPGIGYVYFSS  148 (573)
Q Consensus        80 ~~i~~~--~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg---------~~~~~l~~~~~~P~~Iavdp~~g~LYwtd  148 (573)
                      ..+ ..  ....+..|++.+  +.++++-...+.|.+.++..         ......+.....+..|+++|..  |+...
T Consensus        93 ~~~-~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~  167 (342)
T 1yfq_A           93 QAL-TNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGM  167 (342)
T ss_dssp             EEC-BSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEE
T ss_pred             Eec-cccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc--EEEEe
Confidence            433 33  335678899987  44555555678898888763         2211112333457889998843  55554


Q ss_pred             cCCcCeEEEEeccC-CC--cEEEEecCCCCCCCceEEEec-cCCeEEEEeCCCCeEEEEeCCCC-------cEEEEEeCC
Q psy952          149 WNLQAYIGKIGMDG-SN--FTRILTHEDDIAWPNALTLDY-FTERLYWADAHLDYIASVDLDGK-------HKHIVISGQ  217 (573)
Q Consensus       149 ~~~~~~I~r~~ldG-~~--~~~l~~~~~~l~~P~glaiD~-~~~~LYw~D~~~~~I~~~~~dG~-------~~~~l~~~~  217 (573)
                        ....|...++.. ..  .....  ...-..+..|++.+ .+..|+.+ ...+.|...+++..       ....+....
T Consensus       168 --~d~~i~i~d~~~~~~~~~~~~~--~~~~~~i~~i~~~~~~~~~l~~~-~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  242 (342)
T 1yfq_A          168 --NNSQVQWFRLPLCEDDNGTIEE--SGLKYQIRDVALLPKEQEGYACS-SIDGRVAVEFFDDQGDDYNSSKRFAFRCHR  242 (342)
T ss_dssp             --STTEEEEEESSCCTTCCCEEEE--CSCSSCEEEEEECSGGGCEEEEE-ETTSEEEEEECCTTCCSTTCTTCEEEECCC
T ss_pred             --CCCeEEEEECCccccccceeee--cCCCCceeEEEECCCCCCEEEEE-ecCCcEEEEEEcCCCcccccccceeeeccc
Confidence              355777777765 22  22233  23333467888887 55555544 45677777666543       233332221


Q ss_pred             c-------cceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          218 K-------VPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       218 ~-------~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      .       ......|++. .+.++++-...+.|...+..+++....+.
T Consensus       243 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  290 (342)
T 1yfq_A          243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             ccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence            0       1145677764 34444554566778888876676555443

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.09  E-value=0.0015  Score=70.53  Aligned_cols=245  Identities=10%  Similarity=-0.024  Sum_probs=145.6

Q ss_pred             CCceeeCCCCCCEEEEEecccEEEEEcCCC----c-eeecccCCcc-eEEEEEEc--CCCEEEEEECCCCeEEEEEcCCC
Q psy952            6 ESTCKRRDSIKPWLIFSNKYYVRNMSLDAT----Q-YSLVHQDLLN-VVAMDFHY--KENRFYFADVAAKTIYRSRVGST   77 (573)
Q Consensus         6 g~~C~~~~~~~~~l~~s~~~~I~~i~l~g~----~-~~~~~~~~~~-~~~v~~d~--~~~~ly~~d~~~~~I~~~~~~g~   77 (573)
                      ..++.+......+|+++..+.|+..++...    . ...+...... +..|+|.+  ..+.|+.+. ..+.|..+++...
T Consensus        20 ~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~-~dg~v~vw~~~~~   98 (615)
T 1pgu_A           20 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-ESGKVIVWGWTFD   98 (615)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-TTSEEEEEEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec-CCCEEEEEeCCCC
Confidence            344555444456788888888999998754    3 3333333455 88999998  666666554 4677888887422


Q ss_pred             --------cceEEEcCCCCCcceeEEeecCCcEEEEeCCC---CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEE
Q psy952           78 --------EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHS---KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYF  146 (573)
Q Consensus        78 --------~~~~i~~~~~~~p~glavD~~~~~LY~td~~~---~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYw  146 (573)
                              .....+......+..|++.+.++.|+.+....   +.|.+.+ .+.....+.........|++.|...++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  177 (615)
T 1pgu_A           99 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSM  177 (615)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred             cccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcceeeecCCccEEEEEECCCCCcEEE
Confidence                    11112222335788999998887777776442   4565555 33333344445556889999997664555


Q ss_pred             EecCCcCeEEEEeccCCCcEEEEecCCCCC---CCceEEEecc-CCeEEEEeCCCCeEEEEeCCCCcEEEEE-e---CCc
Q psy952          147 SSWNLQAYIGKIGMDGSNFTRILTHEDDIA---WPNALTLDYF-TERLYWADAHLDYIASVDLDGKHKHIVI-S---GQK  218 (573)
Q Consensus       147 td~~~~~~I~r~~ldG~~~~~l~~~~~~l~---~P~glaiD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~l~-~---~~~  218 (573)
                      +-. ....|...++........+  ...-.   ....+++.+. +..|+.+ ...+.|...++........+ .   .. 
T Consensus       178 ~~~-~d~~v~vwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~-  252 (615)
T 1pgu_A          178 TVG-DDGSVVFYQGPPFKFSASD--RTHHKQGSFVRDVEFSPDSGEFVITV-GSDRKISCFDGKSGEFLKYIEDDQEPV-  252 (615)
T ss_dssp             EEE-TTTEEEEEETTTBEEEEEE--CSSSCTTCCEEEEEECSTTCCEEEEE-ETTCCEEEEETTTCCEEEECCBTTBCC-
T ss_pred             EEe-CCCcEEEEeCCCcceeeee--cccCCCCceEEEEEECCCCCCEEEEE-eCCCeEEEEECCCCCEeEEeccccccc-
Confidence            542 3566766665543332223  22222   4568999887 5555544 45678888887654433333 2   21 


Q ss_pred             cceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          219 VPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       219 ~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      .....+|++.++.++++-...+.|...+..+++....+.
T Consensus       253 ~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            234567776544555555556777777766666555443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.08  E-value=0.0092  Score=58.44  Aligned_cols=255  Identities=11%  Similarity=0.006  Sum_probs=148.6

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR   84 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~   84 (573)
                      .++.+.....++|+.+. ...|+..++..... ..+......+..++|.+..+.|+.. ...+.|...++........+.
T Consensus        16 V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~~~~   94 (304)
T 2ynn_A           16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-SDDFRIRVFNYNTGEKVVDFE   94 (304)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEE-ETTSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEE-CCCCEEEEEECCCCcEEEEEe
Confidence            34555443345555554 46788888875543 2222233457789999876666554 456789999987654433343


Q ss_pred             CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-e-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952           85 HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-R-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG  162 (573)
Q Consensus        85 ~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG  162 (573)
                      .....+..|++.+.+.. +++-...+.|.+.++.... . ..+.........++++|..+.++.+-. ....|...++..
T Consensus        95 ~h~~~v~~~~~~~~~~~-l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs-~D~~v~iwd~~~  172 (304)
T 2ynn_A           95 AHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC-LDRTVKVWSLGQ  172 (304)
T ss_dssp             CCSSCEEEEEECSSSSE-EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE-TTSEEEEEETTC
T ss_pred             CCCCcEEEEEEcCCCCE-EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe-CCCeEEEEECCC
Confidence            33457889999876554 4555567889998886542 2 223344455789999996666655542 345676666643


Q ss_pred             CC-cEEEEecCCCCCCCceEEEecc-CCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCC
Q psy952          163 SN-FTRILTHEDDIAWPNALTLDYF-TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNT  239 (573)
Q Consensus       163 ~~-~~~l~~~~~~l~~P~glaiD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~  239 (573)
                      .. ...+.  .........+.+.+. ++.+.++-...+.|...++........+.+. ......+++. .+.++.+-...
T Consensus       173 ~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s~D  249 (304)
T 2ynn_A          173 STPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGH-MSNVSFAVFHPTLPIIISGSED  249 (304)
T ss_dssp             SSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEEEECSSSSEEEEEETT
T ss_pred             CCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCC-CCCEEEEEECCCCCEEEEEcCC
Confidence            33 23333  122222344555442 3445555556778888888755443333332 3345566664 34566666667


Q ss_pred             CceEEEeccCCcceEEEcccCCCceeee
Q psy952          240 KSINRADKFNGRDYRVLRNTTHRPYDIH  267 (573)
Q Consensus       240 ~~I~~~~~~~g~~~~~l~~~~~~p~~i~  267 (573)
                      +.|..-+..+++....+.........++
T Consensus       250 g~i~iWd~~~~~~~~~~~~~~~~~~~~~  277 (304)
T 2ynn_A          250 GTLKIWNSSTYKVEKTLNVGLERSWCIA  277 (304)
T ss_dssp             SCEEEEETTTCCEEEEECCSSSSEEEEE
T ss_pred             CeEEEEECCCCceeeeccCCCccEEEEE
Confidence            7787777777776666654433333333

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.08  E-value=0.0011  Score=67.22  Aligned_cols=204  Identities=9%  Similarity=0.015  Sum_probs=135.3

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC--CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH--DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR  122 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~--~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~  122 (573)
                      ..+..|+|.+.+..++++-...+.|..+++.+.....++..  ....+..|++.+..++++++-...+.|.+.++.+...
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  153 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI  153 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce
Confidence            45789999987635555555677899999987655544432  3357788888764445555556678999999998666


Q ss_pred             eEeccCC---CCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe
Q psy952          123 KTLKTAI---QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY  199 (573)
Q Consensus       123 ~~l~~~~---~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~  199 (573)
                      ..+....   .....|++.|...+|+...  ....|...++.+.....+.   ..-.....|++.+.+..++++-...+.
T Consensus       154 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~~~d~~  228 (383)
T 3ei3_B          154 QVFAKTDSWDYWYCCVDVSVSRQMLATGD--STGRLLLLGLDGHEIFKEK---LHKAKVTHAEFNPRCDWLMATSSVDAT  228 (383)
T ss_dssp             EEEECCCCSSCCEEEEEEETTTTEEEEEE--TTSEEEEEETTSCEEEEEE---CSSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred             EEEeccCCCCCCeEEEEECCCCCEEEEEC--CCCCEEEEECCCCEEEEec---cCCCcEEEEEECCCCCCEEEEEeCCCE
Confidence            6555322   4478999999777666655  3568888888766555554   333456789999777646666666788


Q ss_pred             EEEEeCCC-----CcEEEEEeCCccceeEEEeee--CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          200 IASVDLDG-----KHKHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       200 I~~~~~dG-----~~~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      |...++..     .....+ ..  .....+|++.  .+.++++-...+.|...+..+++....+
T Consensus       229 i~iwd~~~~~~~~~~~~~~-~~--~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  289 (383)
T 3ei3_B          229 VKLWDLRNIKDKNSYIAEM-PH--EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQI  289 (383)
T ss_dssp             EEEEEGGGCCSTTCEEEEE-EC--SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEE
T ss_pred             EEEEeCCCCCcccceEEEe-cC--CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccc
Confidence            88888763     222333 22  3456778874  3455555556677887777666654433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.06  E-value=0.0042  Score=62.88  Aligned_cols=241  Identities=8%  Similarity=-0.066  Sum_probs=141.6

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCc-------eeecccCCcceEEEEEEcC---CC---EEEEEECCCCeEEEE
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQ-------YSLVHQDLLNVVAMDFHYK---EN---RFYFADVAAKTIYRS   72 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~-------~~~~~~~~~~~~~v~~d~~---~~---~ly~~d~~~~~I~~~   72 (573)
                      .+|.+.. + .+|+.+. ...|+..++....       ...+......+..|+|.+.   ++   .++++-...+.|+.+
T Consensus        19 i~~~~~~-~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw   96 (397)
T 1sq9_A           19 IFSVSAC-N-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFY   96 (397)
T ss_dssp             EEEEEEC-S-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEE
T ss_pred             eEEEEec-C-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEE
Confidence            3455543 3 5555554 4688888887654       2233333455789999976   24   444554556778888


Q ss_pred             EcCCCcc-----eEEEcCC-----CCCcceeEEe----ecCCc-EEEEeCCCCeEEEEEcCC-------Ccee-----Ee
Q psy952           73 RVGSTEK-----ERVIRHD-----SHGLEGLAVD----WVGRK-LYWLDRHSKQLDVAELDG-------TNRK-----TL  125 (573)
Q Consensus        73 ~~~g~~~-----~~i~~~~-----~~~p~glavD----~~~~~-LY~td~~~~~I~~~~ldg-------~~~~-----~l  125 (573)
                      ++.....     ...+...     ...+..|++.    +.++. |+.+. ..+.|.+.++..       ....     .+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  175 (397)
T 1sq9_A           97 RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD-VKGTTYIWKFHPFADESNSLTLNWSPTLEL  175 (397)
T ss_dssp             EEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE-TTSCEEEEEEESSSSHHHHTTTCCCCEEEE
T ss_pred             EccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe-CCCcEEEEeCCccccccccceeeccCccee
Confidence            8765442     2223222     2577888888    76666 55444 567888888765       2222     33


Q ss_pred             c-------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCC---C---CCCCceEEEeccCCeEEE
Q psy952          126 K-------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHED---D---IAWPNALTLDYFTERLYW  192 (573)
Q Consensus       126 ~-------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~---~---l~~P~glaiD~~~~~LYw  192 (573)
                      .       .....+..|+++|.. +|+...  ....|...++........+  ..   .   -.....|++++.+..|+.
T Consensus       176 ~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~--~~~~~h~~~~~~i~~i~~~~~~~~l~~  250 (397)
T 1sq9_A          176 QGTVESPMTPSQFATSVDISERG-LIATGF--NNGTVQISELSTLRPLYNF--ESQHSMINNSNSIRSVKFSPQGSLLAI  250 (397)
T ss_dssp             EEEECCSSSSCCCCCEEEECTTS-EEEEEC--TTSEEEEEETTTTEEEEEE--ECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             eeeeccccCCCCCceEEEECCCc-eEEEEe--CCCcEEEEECCCCceeEEE--eccccccccCCccceEEECCCCCEEEE
Confidence            1       234458899999965 444433  4567888887644333333  12   2   345578999877666665


Q ss_pred             EeCCC---CeEEEEeCCCCcEEEEEeC-------------CccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEE
Q psy952          193 ADAHL---DYIASVDLDGKHKHIVISG-------------QKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRV  255 (573)
Q Consensus       193 ~D~~~---~~I~~~~~dG~~~~~l~~~-------------~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~  255 (573)
                      +. ..   +.|...++........+..             . ......|++. ++.++++-...+.|...+..+++....
T Consensus       251 ~~-~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  328 (397)
T 1sq9_A          251 AH-DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT  328 (397)
T ss_dssp             EE-EETTEEEEEEEETTTCCEEEEECBC--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred             Ee-cCCCCceEEEEECCCCcccceeccCccccccccccccc-CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEE
Confidence            54 34   6888888865444333332             1 2356677774 344555555667788777777766555


Q ss_pred             Ec
Q psy952          256 LR  257 (573)
Q Consensus       256 l~  257 (573)
                      +.
T Consensus       329 ~~  330 (397)
T 1sq9_A          329 LN  330 (397)
T ss_dssp             EE
T ss_pred             Ee
Confidence            54

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.05  E-value=0.00082  Score=69.77  Aligned_cols=200  Identities=10%  Similarity=-0.002  Sum_probs=133.7

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC----------CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEE
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS----------TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLD  113 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g----------~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~  113 (573)
                      ...+..|+|.+.++.++++-...+.|+.+++..          ......+...-..+.+|++.+.+..++++-...+.|.
T Consensus       128 ~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          128 EGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             SSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEE
T ss_pred             CCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEE
Confidence            345789999987677888877788899888864          1222222223356788888877665777777788999


Q ss_pred             EEEcCCCc--------eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC----CcEEEEecCCCCCCCceE
Q psy952          114 VAELDGTN--------RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS----NFTRILTHEDDIAWPNAL  181 (573)
Q Consensus       114 ~~~ldg~~--------~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~----~~~~l~~~~~~l~~P~gl  181 (573)
                      +.++....        ...+......+..|+++|..+.++++.. ....|...++...    ....+.   ..-..++.|
T Consensus       208 vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~-~dg~i~i~d~~~~~~~~~~~~~~---~~~~~v~~i  283 (430)
T 2xyi_A          208 LWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA-DDQKLMIWDTRNNNTSKPSHTVD---AHTAEVNCL  283 (430)
T ss_dssp             EEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE-TTSEEEEEETTCSCSSSCSEEEE---CCSSCEEEE
T ss_pred             EEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe-CCCeEEEEECCCCCCCcceeEee---cCCCCeEEE
Confidence            99987521        1122234445889999997777877763 3567877777643    222332   333457899


Q ss_pred             EEeccCCeEEEEeCCCCeEEEEeCCCC-c-EEEEEeCCccceeEEEeee--CCeEEEecCCCCceEEEeccC
Q psy952          182 TLDYFTERLYWADAHLDYIASVDLDGK-H-KHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       182 aiD~~~~~LYw~D~~~~~I~~~~~dG~-~-~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~~  249 (573)
                      ++.+.+..++++-...+.|...++... . ...+...  ......|++.  +..++.+-...+.|...+...
T Consensus       284 ~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          284 SFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             EeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            999888888888778889999998752 2 3333322  3456777774  446788777777777766544

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.04  E-value=0.0055  Score=63.79  Aligned_cols=224  Identities=10%  Similarity=-0.039  Sum_probs=134.9

Q ss_pred             CceeeCCCCCCEEEEEe--cccEEEEEcC--CCce-eecc--cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc
Q psy952            7 STCKRRDSIKPWLIFSN--KYYVRNMSLD--ATQY-SLVH--QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK   79 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~--~~~I~~i~l~--g~~~-~~~~--~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~   79 (573)
                      .++.+......+|+++.  ...|+..++.  .... ..+.  .....+.+|+|.+.+..|+.++. .+.|+.+++.....
T Consensus       105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-~g~v~~~~~~~~~~  183 (450)
T 2vdu_B          105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK-FGDVYSIDINSIPE  183 (450)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-TSEEEEEETTSCCC
T ss_pred             eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC-CCcEEEEecCCccc
Confidence            45665544445654443  3678888876  4433 2221  23356889999998888887765 67899998865432


Q ss_pred             eE----EEcCCCCCcceeEEeec--CCcEEEEeCCCCeEEEEEcCCCc-eeEec-cCCCCcceEEEeCCCceEEEEecCC
Q psy952           80 ER----VIRHDSHGLEGLAVDWV--GRKLYWLDRHSKQLDVAELDGTN-RKTLK-TAIQDPRGITLHPGIGYVYFSSWNL  151 (573)
Q Consensus        80 ~~----i~~~~~~~p~glavD~~--~~~LY~td~~~~~I~~~~ldg~~-~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~  151 (573)
                      ..    .+......+..|++.+.  .++++++-...+.|.+.++.... ...+. .....+..|+++ ...+|+...  .
T Consensus       184 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~--~  260 (450)
T 2vdu_B          184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAG--G  260 (450)
T ss_dssp             SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEE--S
T ss_pred             ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEe--C
Confidence            21    11112357888999886  14444444456789999886443 34434 344567899998 555565554  3


Q ss_pred             cCeEEEEeccCCCcEEEEecC-----------------------CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC--C
Q psy952          152 QAYIGKIGMDGSNFTRILTHE-----------------------DDIAWPNALTLDYFTERLYWADAHLDYIASVDL--D  206 (573)
Q Consensus       152 ~~~I~r~~ldG~~~~~l~~~~-----------------------~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~--d  206 (573)
                      ...|...++........+...                       ..-....+|++.+.+..||.+....+.|...++  .
T Consensus       261 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~  340 (450)
T 2vdu_B          261 DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEK  340 (450)
T ss_dssp             SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSS
T ss_pred             CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccC
Confidence            567777777644432222100                       001224578888888888888767788877777  2


Q ss_pred             -CCcEEEE--EeCCccceeEEEeeeCCeEEEec
Q psy952          207 -GKHKHIV--ISGQKVPHVFALTLFEDHIYWTD  236 (573)
Q Consensus       207 -G~~~~~l--~~~~~~~~p~~ia~~~~~lywtd  236 (573)
                       +...+.+  +..  -..+.+|++..+.+|++-
T Consensus       341 ~~~~l~~~~~~~~--~~~v~~~~~~~~~~~v~~  371 (450)
T 2vdu_B          341 QKGDLALKQIITF--PYNVISLSAHNDEFQVTL  371 (450)
T ss_dssp             STTCEEEEEEEEC--SSCEEEEEEETTEEEEEE
T ss_pred             CCCceeeccEecc--CCceEEEEecCCcEEEEE
Confidence             2222222  222  246889999878777763

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.03  E-value=0.0068  Score=60.22  Aligned_cols=224  Identities=8%  Similarity=0.030  Sum_probs=133.0

Q ss_pred             CCEEEEEe-cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC----CCeEEEEEcCCCcc-----------
Q psy952           16 KPWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA----AKTIYRSRVGSTEK-----------   79 (573)
Q Consensus        16 ~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~----~~~I~~~~~~g~~~-----------   79 (573)
                      ..+|+.+. ...|+..++..............+..++|.+....|+.+...    .+.|..+++.....           
T Consensus        86 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~  165 (369)
T 3zwl_B           86 TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP  165 (369)
T ss_dssp             SSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence            34555544 467888888765544444455668899999877777776543    26777777654311           


Q ss_pred             -eEEEc-CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC--CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeE
Q psy952           80 -ERVIR-HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG--TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYI  155 (573)
Q Consensus        80 -~~i~~-~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg--~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I  155 (573)
                       ..+.. .+...+..+++.+.++.|+.+. ..+.|.+.++..  .....+........+|+++|...+|+...  ....|
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i  242 (369)
T 3zwl_B          166 IHKIITHEGLDAATVAGWSTKGKYIIAGH-KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS--RDTNS  242 (369)
T ss_dssp             SEEEECCTTCCCEEEEEECGGGCEEEEEE-TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSEE
T ss_pred             eeeccCCcCccceeEEEEcCCCCEEEEEc-CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec--CCceE
Confidence             11111 1112678888888666666655 467899999876  22333334555688999999766666554  35678


Q ss_pred             EEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC-------------eEEEEeCCCCcEEEEEeCCcccee
Q psy952          156 GKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD-------------YIASVDLDGKHKHIVISGQKVPHV  222 (573)
Q Consensus       156 ~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~-------------~I~~~~~dG~~~~~l~~~~~~~~p  222 (573)
                      ...++........+   ..-.....+++.+.+..|+.+.....             .|...++........+.+. ....
T Consensus       243 ~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~v  318 (369)
T 3zwl_B          243 FLVDVSTLQVLKKY---ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGH-FGPL  318 (369)
T ss_dssp             EEEETTTCCEEEEE---ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECC-SSCE
T ss_pred             EEEECCCCceeeee---cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecc-cCcE
Confidence            88887755544444   22334578899988888887765433             4555555444433333322 3445


Q ss_pred             EEEeee-CCeEEEecCCCCceEEEe
Q psy952          223 FALTLF-EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       223 ~~ia~~-~~~lywtd~~~~~I~~~~  246 (573)
                      ..|++. ++.++++-...+.|...+
T Consensus       319 ~~~~~s~~~~~l~s~~~dg~v~iw~  343 (369)
T 3zwl_B          319 NTVAISPQGTSYASGGEDGFIRLHH  343 (369)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEE
Confidence            666663 334444433445554433

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.03  E-value=0.00057  Score=79.64  Aligned_cols=220  Identities=10%  Similarity=-0.025  Sum_probs=138.6

Q ss_pred             EecccEE-EEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC
Q psy952           22 SNKYYVR-NMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR  100 (573)
Q Consensus        22 s~~~~I~-~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~  100 (573)
                      +....|+ .+++.+.....+......+..++|.+.++.|+++.. .+.|+.+++.++....++......+..+++.+.++
T Consensus       355 s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~-~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~  433 (1045)
T 1k32_A          355 TREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-RFEIMTVDLETGKPTVIERSREAMITDFTISDNSR  433 (1045)
T ss_dssp             ETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSC
T ss_pred             ECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC-CCeEEEEECCCCceEEeccCCCCCccceEECCCCC
Confidence            3445677 788877665544444456889999998888887764 46899999987666555544445568899998888


Q ss_pred             cEEEEeCC---------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcC----------------eE
Q psy952          101 KLYWLDRH---------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQA----------------YI  155 (573)
Q Consensus       101 ~LY~td~~---------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~----------------~I  155 (573)
                      .|.++...         .+.|.+.++.+.....+......+..++++|...+|||+......                .+
T Consensus       434 ~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~  513 (1045)
T 1k32_A          434 FIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP  513 (1045)
T ss_dssp             EEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEE
T ss_pred             eEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCcee
Confidence            88887542         258999999876655555566667889999988889988642111                12


Q ss_pred             EEEecc------------------------CCCcEEEEecCCCCCCCceEEEeccCCeEEEE-------------eCCCC
Q psy952          156 GKIGMD------------------------GSNFTRILTHEDDIAWPNALTLDYFTERLYWA-------------DAHLD  198 (573)
Q Consensus       156 ~r~~ld------------------------G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~-------------D~~~~  198 (573)
                      +.+.+.                        |....++. ....-....++++.+. +++|++             .....
T Consensus       514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-l~~~~~~~~~~~~s~d-g~~~~~~~~~g~~~~~~~~~~~~~  591 (1045)
T 1k32_A          514 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSP-INVDPGDYRMIIPLES-SILIYSVPVHGEFAAYYQGAPEKG  591 (1045)
T ss_dssp             EEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEE-CSCCCBCEEEEEECSS-EEEEEECCCCCSHHHHHHCCCCCE
T ss_pred             EEEEeCCCCCCccccCcCccccccccccccCHhHceEE-cCCCCCChhheEEcCC-CeEEEEecccCcccccccccCCCc
Confidence            222221                        11100000 0001112356788754 454442             22345


Q ss_pred             eEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCc
Q psy952          199 YIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGR  251 (573)
Q Consensus       199 ~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~  251 (573)
                      .|+++++.+...+.+..     .+.++++  ++.+|+++...  .|..++..+++
T Consensus       592 ~l~~~d~~~~~~~~l~~-----~v~~~~~S~DG~~l~~~~~~--~i~~~d~~~~~  639 (1045)
T 1k32_A          592 VLLKYDVKTRKVTEVKN-----NLTDLRLSADRKTVMVRKDD--GKIYTFPLEKP  639 (1045)
T ss_dssp             EEEEEETTTCCEEEEEE-----EEEEEEECTTSCEEEEEETT--SCEEEEESSCT
T ss_pred             eEEEEECCCCcEEEeec-----CcceEEECCCCCEEEEEcCC--cEEEEeCccCc
Confidence            79999998877766652     3445555  56788888655  57667665665

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.02  E-value=0.0063  Score=60.78  Aligned_cols=237  Identities=11%  Similarity=0.081  Sum_probs=138.5

Q ss_pred             CCceeeCCCCCCEEEEE-ecccEEEEEcCCCc---eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE
Q psy952            6 ESTCKRRDSIKPWLIFS-NKYYVRNMSLDATQ---YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER   81 (573)
Q Consensus         6 g~~C~~~~~~~~~l~~s-~~~~I~~i~l~g~~---~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~   81 (573)
                      ..+|.+......+|+.+ ..+.|+.+++.+..   ...+......+.+|+|.+..+.|+.+. ..+.|..+++.......
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCCeeee
Confidence            34555554444567666 46788888887764   222333445688999998766666554 55678888876544222


Q ss_pred             EE--cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce----eEec-cCCCCcceEEEeCCCceEEEEecCCcCe
Q psy952           82 VI--RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR----KTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAY  154 (573)
Q Consensus        82 i~--~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~----~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~  154 (573)
                      ..  ......+..|++.+.++.|+.+. ..+.|.+.+++....    ..+. .....+..|+++|...+|+...  ....
T Consensus        89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~  165 (372)
T 1k8k_C           89 TLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS--CDFK  165 (372)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE--TTSC
T ss_pred             eEEeecCCCceeEEEECCCCCEEEEEe-CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEc--CCCC
Confidence            22  22235678899987666666655 457788877765442    2222 2345688999999665565554  2455


Q ss_pred             EEEEeccC----------------CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCc
Q psy952          155 IGKIGMDG----------------SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK  218 (573)
Q Consensus       155 I~r~~ldG----------------~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~  218 (573)
                      |...++..                ...+.+......-.....+++.+.+..|+.+. ..+.|...++........+... 
T Consensus       166 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~-  243 (372)
T 1k8k_C          166 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLASE-  243 (372)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEECS-
T ss_pred             EEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe-CCCEEEEEECCCCceeEEEccC-
Confidence            66665421                01111211022333457899987666666554 5678888888644443333332 


Q ss_pred             cceeEEEeee-CCeEEEecCCCCceEEEeccC
Q psy952          219 VPHVFALTLF-EDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       219 ~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~  249 (573)
                      ......+++. ++.++.+- ..+.|...+..+
T Consensus       244 ~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          244 TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence            2345777774 44544444 556666555444

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.02  E-value=0.00048  Score=70.42  Aligned_cols=239  Identities=9%  Similarity=-0.032  Sum_probs=143.8

Q ss_pred             eeeCCCCCCEEEEEe-cccEEEEEcCC----C-ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc----
Q psy952            9 CKRRDSIKPWLIFSN-KYYVRNMSLDA----T-QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE----   78 (573)
Q Consensus         9 C~~~~~~~~~l~~s~-~~~I~~i~l~g----~-~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~----   78 (573)
                      +.+......+|+.+. ...|+..++..    . ....+......+..|+|.+.++.++++-...+.|+.+++....    
T Consensus        72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~  151 (416)
T 2pm9_A           72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS  151 (416)
T ss_dssp             EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT
T ss_pred             EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc
Confidence            443332334555543 46788888865    2 2222333345578999998756666666677889999887654    


Q ss_pred             --ceEEE---cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-C------CCCcceEEEeCCCceEEE
Q psy952           79 --KERVI---RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-A------IQDPRGITLHPGIGYVYF  146 (573)
Q Consensus        79 --~~~i~---~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-~------~~~P~~Iavdp~~g~LYw  146 (573)
                        ....+   ......+..|++.+.++.++++-...+.|.+.++........+. .      ...+..|+++|....+++
T Consensus       152 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          152 NYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             TCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             cccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence              21111   11235678899987767788887778899999987654433332 2      455889999997655555


Q ss_pred             EecCCcC---eEEEEeccCCC-cEEEEecC-CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccce
Q psy952          147 SSWNLQA---YIGKIGMDGSN-FTRILTHE-DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPH  221 (573)
Q Consensus       147 td~~~~~---~I~r~~ldG~~-~~~l~~~~-~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~  221 (573)
                      +-.. ..   .|...++.... ....+  . ..-.....|++.+.+++++++-...+.|...++........+... ...
T Consensus       232 ~~~~-d~~~~~i~~~d~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~-~~~  307 (416)
T 2pm9_A          232 TATG-SDNDPSILIWDLRNANTPLQTL--NQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPAR-GNW  307 (416)
T ss_dssp             EEEC-CSSSCCCCEEETTSTTSCSBCC--CSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECS-SSC
T ss_pred             EEEC-CCCCceEEEEeCCCCCCCcEEe--ecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCC-CCc
Confidence            5432 22   66666665432 11112  1 223345788888745666666566788888888655443333332 234


Q ss_pred             eEEEeeeC-C-eEEEecCCCCceEEEeccCCc
Q psy952          222 VFALTLFE-D-HIYWTDWNTKSINRADKFNGR  251 (573)
Q Consensus       222 p~~ia~~~-~-~lywtd~~~~~I~~~~~~~g~  251 (573)
                      ...|++.. + .++++-...+.|...+..++.
T Consensus       308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             CCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             eEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            55677643 3 577776666777666654443

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.01  E-value=0.00028  Score=82.30  Aligned_cols=209  Identities=11%  Similarity=0.114  Sum_probs=136.9

Q ss_pred             EEEEEecccEEEEEcCCCceeecccC-----------CcceEEEEEE-cCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952           18 WLIFSNKYYVRNMSLDATQYSLVHQD-----------LLNVVAMDFH-YKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus        18 ~l~~s~~~~I~~i~l~g~~~~~~~~~-----------~~~~~~v~~d-~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      +|+++....|+.+++.+..+..+...           ...+..++|. +.+..|.++.  .+.|+.+++.+.....+. .
T Consensus       258 ~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~-~  334 (1045)
T 1k32_A          258 RILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVP-E  334 (1045)
T ss_dssp             CEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECS-C
T ss_pred             EEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEcc-C
Confidence            45556666788787755444322111           1146789999 8888888776  568888888765543322 2


Q ss_pred             CCC-CcceeEEeecCCcEEEEeCCCCeEE-EEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           86 DSH-GLEGLAVDWVGRKLYWLDRHSKQLD-VAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        86 ~~~-~p~glavD~~~~~LY~td~~~~~I~-~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      ... .+..+++. .++.|+++.. ...|+ +.++.+...+.+......+..++++|...+|+++..  ...|...++.+.
T Consensus       335 ~~~~~~~~~~~s-dg~~l~~~s~-~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~--~~~v~~~d~~tg  410 (1045)
T 1k32_A          335 PLRIRYVRRGGD-TKVAFIHGTR-EGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND--RFEIMTVDLETG  410 (1045)
T ss_dssp             CSCEEEEEECSS-SEEEEEEEET-TEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET--TSEEEEEETTTC
T ss_pred             CCcceEEeeeEc-CCCeEEEEEC-CCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC--CCeEEEEECCCC
Confidence            222 45566666 5556777655 56888 889988766666544456889999998888887763  458999998766


Q ss_pred             CcEEEEecCCCCCCCceEEEeccCCeEEEEeCC---------CCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeE
Q psy952          164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAH---------LDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHI  232 (573)
Q Consensus       164 ~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~---------~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~l  232 (573)
                      ..+.+.  .........+++.+++.+|.++...         ...|+..++++.....+...  ...+..+++  ++.+|
T Consensus       411 ~~~~~~--~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~--~~~~~~~~~spdG~~l  486 (1045)
T 1k32_A          411 KPTVIE--RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE--NSHDYAPAFDADSKNL  486 (1045)
T ss_dssp             CEEEEE--ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCS--SSBEEEEEECTTSCEE
T ss_pred             ceEEec--cCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCC--CcccCCceEcCCCCEE
Confidence            655555  2333344789999988888887542         25799999987654433322  334566665  45678


Q ss_pred             EEecC
Q psy952          233 YWTDW  237 (573)
Q Consensus       233 ywtd~  237 (573)
                      ||+..
T Consensus       487 ~~~s~  491 (1045)
T 1k32_A          487 YYLSY  491 (1045)
T ss_dssp             EEEES
T ss_pred             EEEec
Confidence            87754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.00  E-value=0.0088  Score=61.47  Aligned_cols=244  Identities=11%  Similarity=0.025  Sum_probs=140.5

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      +|.+......+|+.+. ...|+..++........+. ....+..|+|++.++ ++++-...+.|..+++.+......+..
T Consensus       112 ~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~~~~~~~  190 (410)
T 1vyh_C          112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHG  190 (410)
T ss_dssp             EEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCEEECCCC
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEEcC
Confidence            3444332234444443 4678888887554433323 344578999997554 555555667888888876543222322


Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      ....+..|++.+.++.| ++-...+.|.+.++.... ..++.........++++|.. .++++-. ....|...++....
T Consensus       191 h~~~V~~v~~~p~~~~l-~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s-~D~~v~vwd~~~~~  267 (410)
T 1vyh_C          191 HDHNVSSVSIMPNGDHI-VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCS-NDQTVRVWVVATKE  267 (410)
T ss_dssp             CSSCEEEEEECSSSSEE-EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEE-TTSCEEEEETTTCC
T ss_pred             CCCCEEEEEEeCCCCEE-EEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEc-CCCeEEEEECCCCc
Confidence            33567888998755544 555567889999986443 34444444557888888854 4444432 34566666665443


Q ss_pred             cEEEEecCCCCCCCceEEEeccC-------------------CeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEE
Q psy952          165 FTRILTHEDDIAWPNALTLDYFT-------------------ERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFAL  225 (573)
Q Consensus       165 ~~~l~~~~~~l~~P~glaiD~~~-------------------~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~i  225 (573)
                      ....+  ...-.....+++.+..                   +.+.++-...+.|...++........+.+. .....+|
T Consensus       268 ~~~~~--~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h-~~~v~~v  344 (410)
T 1vyh_C          268 CKAEL--REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRGV  344 (410)
T ss_dssp             EEEEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEEE
T ss_pred             eeeEe--cCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC-CCcEEEE
Confidence            33333  2222334566665532                   445666666778888887654433333332 2345677


Q ss_pred             eee-CCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          226 TLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       226 a~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      ++. ++.++++-...+.|..-+..+++...++..
T Consensus       345 ~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~  378 (410)
T 1vyh_C          345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA  378 (410)
T ss_dssp             EECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence            774 344555555667777776666665555543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.00  E-value=0.0074  Score=59.81  Aligned_cols=219  Identities=12%  Similarity=0.085  Sum_probs=129.2

Q ss_pred             CEEEEEe-cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           17 PWLIFSN-KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      ++|+-+. ...|+..++..... ..+......+..++|.+..+.|. +-...+.|..+++........+...-..+..|+
T Consensus        93 ~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~-~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~  171 (321)
T 3ow8_A           93 PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLA-TGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA  171 (321)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEE-EECTTSEEEEEETTTCSEEEEEECSSSCEEEEE
T ss_pred             CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEE-EEcCCCcEEEEEcCCCceeEEecCCCceEEEEE
Confidence            3444333 46788888865433 23323334566889998665554 455677898889876554444443345678899


Q ss_pred             EeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCC
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHED  173 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~  173 (573)
                      +.+.++.|... ...+.|.+.++..... .++.......+.|+++|...+|+...  ....|...++........+  ..
T Consensus       172 ~spdg~~lasg-~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s--~dg~i~iwd~~~~~~~~~~--~~  246 (321)
T 3ow8_A          172 YSPDGKYLASG-AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS--DDGYIKIYDVQHANLAGTL--SG  246 (321)
T ss_dssp             ECTTSSEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC--TTSCEEEEETTTCCEEEEE--CC
T ss_pred             ECCCCCEEEEE-cCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc--CCCeEEEEECCCcceeEEE--cC
Confidence            98766555544 4567899999865443 33333445578999999655555443  3566777777655444333  23


Q ss_pred             CCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC-CeEEEecCCCCceE
Q psy952          174 DIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE-DHIYWTDWNTKSIN  243 (573)
Q Consensus       174 ~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~  243 (573)
                      .-.....|++.+.+..|+- -...+.|...++........+.+. .....+|++.. +..+++-...+.|.
T Consensus       247 h~~~v~~~~~sp~~~~l~s-~s~D~~v~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~s~~~d~~i~  315 (321)
T 3ow8_A          247 HASWVLNVAFCPDDTHFVS-SSSDKSVKVWDVGTRTCVHTFFDH-QDQVWGVKYNGNGSKIVSVGDDQEIH  315 (321)
T ss_dssp             CSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             CCCceEEEEECCCCCEEEE-EeCCCcEEEEeCCCCEEEEEEcCC-CCcEEEEEECCCCCEEEEEeCCCeEE
Confidence            3445578899876655554 445677888887654433223222 23566777643 33344433344443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.00  E-value=0.00068  Score=75.83  Aligned_cols=230  Identities=10%  Similarity=0.065  Sum_probs=132.9

Q ss_pred             CEEEEEec----------ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC
Q psy952           17 PWLIFSNK----------YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD   86 (573)
Q Consensus        17 ~~l~~s~~----------~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~   86 (573)
                      .+|+++..          ..|+.+++.+.+...+.........++|.+.+++|.++.  .+.|+.+++.++....+...+
T Consensus        74 ~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~~~~~~lt~~g  151 (740)
T 4a5s_A           74 QFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWTG  151 (740)
T ss_dssp             SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSCC
T ss_pred             CEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE--CCeEEEEECCCCceEEEcCCC
Confidence            45666654          456788888776555444445678889999888887773  357888888765544333222


Q ss_pred             ------------------CCCcceeEEeecCCcEEEEe--CC---------------------------------CCeEE
Q psy952           87 ------------------SHGLEGLAVDWVGRKLYWLD--RH---------------------------------SKQLD  113 (573)
Q Consensus        87 ------------------~~~p~glavD~~~~~LY~td--~~---------------------------------~~~I~  113 (573)
                                        +....++++.+.++.|.++.  ..                                 ..+|.
T Consensus       152 ~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~  231 (740)
T 4a5s_A          152 KEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFF  231 (740)
T ss_dssp             BTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEE
T ss_pred             CccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEE
Confidence                              12223566777777666642  11                                 01466


Q ss_pred             EEEcCC---C---ceeEecc------CCCCcceEEEeCCCceEE-EEecCC-cCeEEEEeccCCC-------cEEEE-ec
Q psy952          114 VAELDG---T---NRKTLKT------AIQDPRGITLHPGIGYVY-FSSWNL-QAYIGKIGMDGSN-------FTRIL-TH  171 (573)
Q Consensus       114 ~~~ldg---~---~~~~l~~------~~~~P~~Iavdp~~g~LY-wtd~~~-~~~I~r~~ldG~~-------~~~l~-~~  171 (573)
                      +.++++   .   ....+..      .......++..|....|+ +..... ...|...++++..       ...++ ..
T Consensus       232 v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~  311 (740)
T 4a5s_A          232 VVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMS  311 (740)
T ss_dssp             EEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEEC
T ss_pred             EEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeecc
Confidence            677776   4   3333322      122245677888655343 444221 3468888877654       22232 10


Q ss_pred             CCC-CC--CCceEEEeccCCeEE-EEeC--CCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCC------C
Q psy952          172 EDD-IA--WPNALTLDYFTERLY-WADA--HLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWN------T  239 (573)
Q Consensus       172 ~~~-l~--~P~glaiD~~~~~LY-w~D~--~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~------~  239 (573)
                      ... +.  .+..+++.+++..|+ |+..  +...|+.++.+|...+.|..+. ..-..-+.++++.||++-..      .
T Consensus       312 ~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~-~~v~~~~~~d~~~i~f~~~~~~~~~~~  390 (740)
T 4a5s_A          312 TTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT-WEVIGIEALTSDYLYYISNEYKGMPGG  390 (740)
T ss_dssp             SSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSS-SCEEEEEEECSSEEEEEESCGGGCTTC
T ss_pred             CCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCC-EEEEEEEEEeCCEEEEEEecCCCCCce
Confidence            111 11  144678888888776 6643  3457999999998877766553 21111122457888887544      3


Q ss_pred             CceEEEeccC
Q psy952          240 KSINRADKFN  249 (573)
Q Consensus       240 ~~I~~~~~~~  249 (573)
                      ..|++++..+
T Consensus       391 ~~ly~v~~~g  400 (740)
T 4a5s_A          391 RNLYKIQLID  400 (740)
T ss_dssp             BEEEEEETTE
T ss_pred             eEEEEEECCC
Confidence            4688887543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=97.99  E-value=0.0033  Score=63.71  Aligned_cols=185  Identities=10%  Similarity=0.024  Sum_probs=112.3

Q ss_pred             EEEEEe-cccEEEEEcCCCc------eeecccC-----CcceEEEEEE----cCCCE-EEEEECCCCeEEEEEcCC----
Q psy952           18 WLIFSN-KYYVRNMSLDATQ------YSLVHQD-----LLNVVAMDFH----YKENR-FYFADVAAKTIYRSRVGS----   76 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~------~~~~~~~-----~~~~~~v~~d----~~~~~-ly~~d~~~~~I~~~~~~g----   76 (573)
                      +|+.+. ...|+.+++....      ...+...     ...+..++|.    +.... |+.+ ...+.|+.+++..    
T Consensus        83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~  161 (397)
T 1sq9_A           83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVAT-DVKGTTYIWKFHPFADE  161 (397)
T ss_dssp             EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEE-ETTSCEEEEEEESSSSH
T ss_pred             EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEE-eCCCcEEEEeCCccccc
Confidence            444433 4678888876544      2222222     2668899999    87777 5554 4556777777764    


Q ss_pred             --C-cce-----EEE------cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccC-------CCCcceE
Q psy952           77 --T-EKE-----RVI------RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTA-------IQDPRGI  135 (573)
Q Consensus        77 --~-~~~-----~i~------~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~-------~~~P~~I  135 (573)
                        . ...     .+.      ......+..|++.+.+  ++++-...+.|.+.++........+..       ...+..|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          162 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  239 (397)
T ss_dssp             HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             cccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence              2 222     332      2223568889998755  666666778999999875443333333       5568899


Q ss_pred             EEeCCCceEEEEecCCc---CeEEEEeccCCCcEEEEecCC-------------CCCCCceEEEeccCCeEEEEeCCCCe
Q psy952          136 TLHPGIGYVYFSSWNLQ---AYIGKIGMDGSNFTRILTHED-------------DIAWPNALTLDYFTERLYWADAHLDY  199 (573)
Q Consensus       136 avdp~~g~LYwtd~~~~---~~I~r~~ldG~~~~~l~~~~~-------------~l~~P~glaiD~~~~~LYw~D~~~~~  199 (573)
                      +++|...+|+...  ..   ..|...++........+  ..             .-.....|++.+.+..|+.+ ...+.
T Consensus       240 ~~~~~~~~l~~~~--~d~~~g~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~  314 (397)
T 1sq9_A          240 KFSPQGSLLAIAH--DSNSFGCITLYETEFGERIGSL--SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA-GWDGK  314 (397)
T ss_dssp             EECSSTTEEEEEE--EETTEEEEEEEETTTCCEEEEE--CBC--------CCBSBSSCEEEEEECSSSSEEEEE-ETTSE
T ss_pred             EECCCCCEEEEEe--cCCCCceEEEEECCCCccccee--ccCcccccccccccccCCcEEEEEECCCCCEEEEE-eCCCe
Confidence            9999766666554  23   57887777644433333  22             23345688998766665554 46678


Q ss_pred             EEEEeCCCCcE
Q psy952          200 IASVDLDGKHK  210 (573)
Q Consensus       200 I~~~~~dG~~~  210 (573)
                      |...++.....
T Consensus       315 i~iwd~~~~~~  325 (397)
T 1sq9_A          315 LRFWDVKTKER  325 (397)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEEcCCCce
Confidence            88888865444

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.99  E-value=0.00093  Score=74.15  Aligned_cols=229  Identities=10%  Similarity=0.053  Sum_probs=134.6

Q ss_pred             CCEEEEEec----------ccEEEEEcCCCceeecccCCc---ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE
Q psy952           16 KPWLIFSNK----------YYVRNMSLDATQYSLVHQDLL---NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV   82 (573)
Q Consensus        16 ~~~l~~s~~----------~~I~~i~l~g~~~~~~~~~~~---~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i   82 (573)
                      ..+|+++..          ..|+.+++++.....+.....   .+..++|.+.++.|.++..  +.|+.++++++....+
T Consensus        72 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--~~i~~~~~~~g~~~~~  149 (723)
T 1xfd_A           72 REYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--NNIYYCAHVGKQAIRV  149 (723)
T ss_dssp             SSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--TEEEEESSSSSCCEEE
T ss_pred             CCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--CeEEEEECCCCceEEE
Confidence            346666653          567788887765533322211   2567889998888888764  5899999887665555


Q ss_pred             EcCCCC------------------CcceeEEeecCCcEEEEeCCC---------------------------------Ce
Q psy952           83 IRHDSH------------------GLEGLAVDWVGRKLYWLDRHS---------------------------------KQ  111 (573)
Q Consensus        83 ~~~~~~------------------~p~glavD~~~~~LY~td~~~---------------------------------~~  111 (573)
                      ...+..                  .+.++++.+.++.|+++....                                 ..
T Consensus       150 ~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~  229 (723)
T 1xfd_A          150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS  229 (723)
T ss_dssp             ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred             ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence            443221                  236788888888887764211                                 16


Q ss_pred             EEEEEcCCCce-eEeccC------CCCcceEEEeCCCceEEEE-ecC-CcCeEEEEeccCCCcEEEEecC-CCCCC--Cc
Q psy952          112 LDVAELDGTNR-KTLKTA------IQDPRGITLHPGIGYVYFS-SWN-LQAYIGKIGMDGSNFTRILTHE-DDIAW--PN  179 (573)
Q Consensus       112 I~~~~ldg~~~-~~l~~~------~~~P~~Iavdp~~g~LYwt-d~~-~~~~I~r~~ldG~~~~~l~~~~-~~l~~--P~  179 (573)
                      |.+.++.+... ..+...      ......+++.|...+|+.+ +.+ ....|+..++++.....+.... .....  +.
T Consensus       230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  309 (723)
T 1xfd_A          230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE  309 (723)
T ss_dssp             EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred             EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence            77777776553 333221      2235678999976666443 322 2356888888766554443101 11111  24


Q ss_pred             eEEEeccCCeEEEE-eCCCC------eEEEEe-CCCCc---EEEEEeCCccceeEEEee--eCCeEEEecC----CCCce
Q psy952          180 ALTLDYFTERLYWA-DAHLD------YIASVD-LDGKH---KHIVISGQKVPHVFALTL--FEDHIYWTDW----NTKSI  242 (573)
Q Consensus       180 glaiD~~~~~LYw~-D~~~~------~I~~~~-~dG~~---~~~l~~~~~~~~p~~ia~--~~~~lywtd~----~~~~I  242 (573)
                      .+++.+++.+|+++ ....+      .|+.++ .++..   .+.+..+. ......+++  ++..||++-.    ....|
T Consensus       310 ~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  388 (723)
T 1xfd_A          310 EPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGD-WDVTKILAYDEKGNKIYFLSTEDLPRRRQL  388 (723)
T ss_dssp             CCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS-SCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred             CceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCC-eEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence            78899888888886 43333      688888 56655   44443322 122222344  5678877643    33457


Q ss_pred             EEEec
Q psy952          243 NRADK  247 (573)
Q Consensus       243 ~~~~~  247 (573)
                      ++++.
T Consensus       389 ~~~~~  393 (723)
T 1xfd_A          389 YSANT  393 (723)
T ss_dssp             EEECS
T ss_pred             EEEeC
Confidence            77764

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.98  E-value=0.00042  Score=70.40  Aligned_cols=188  Identities=6%  Similarity=0.047  Sum_probs=116.4

Q ss_pred             cccEEEEEcCCCceeecccCCcceEEEEEEc-CCCEEEEEECCC-----CeEEEEEcCCCcceEEEcCC-CCCcceeEEe
Q psy952           24 KYYVRNMSLDATQYSLVHQDLLNVVAMDFHY-KENRFYFADVAA-----KTIYRSRVGSTEKERVIRHD-SHGLEGLAVD   96 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~-~~~~ly~~d~~~-----~~I~~~~~~g~~~~~i~~~~-~~~p~glavD   96 (573)
                      ...|+.+++.+.....+......+..++|.+ .+++|+++....     ..|+.+++++.....+.... ...+..+++.
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s  246 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWI  246 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEEC
T ss_pred             cceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEEC
Confidence            3478888988766555544445577889988 566677765332     47999999876655444321 2246667888


Q ss_pred             ecCCcEEEEeC--CCCe--EEEEEcCCCceeEeccCCCCcceEEEeC-CCceEEEEec--------------CCcCeEEE
Q psy952           97 WVGRKLYWLDR--HSKQ--LDVAELDGTNRKTLKTAIQDPRGITLHP-GIGYVYFSSW--------------NLQAYIGK  157 (573)
Q Consensus        97 ~~~~~LY~td~--~~~~--I~~~~ldg~~~~~l~~~~~~P~~Iavdp-~~g~LYwtd~--------------~~~~~I~r  157 (573)
                      +.++.|+++..  ....  |.+.++.+...+.+... ... .+++.| ...+|+++..              .....|++
T Consensus       247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~~~-~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~  324 (396)
T 3c5m_A          247 PDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-PPC-SHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYV  324 (396)
T ss_dssp             TTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-CSE-EEEEECSSSSEEEEEECCC----------CCCCCCEEEE
T ss_pred             CCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-CCC-CCCccCCCCceEEEecCCcceeeccccccccCCCCcEEE
Confidence            87887877642  2334  99999876655444321 111 277887 5555554321              12367999


Q ss_pred             EeccCCCcEEEEecCCCCC----------CCceEEEeccCCeEEEEeCC--CCeEEEEeCCCCcEEEEEe
Q psy952          158 IGMDGSNFTRILTHEDDIA----------WPNALTLDYFTERLYWADAH--LDYIASVDLDGKHKHIVIS  215 (573)
Q Consensus       158 ~~ldG~~~~~l~~~~~~l~----------~P~glaiD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~l~~  215 (573)
                      .++++...+.+..  ....          .+..+++.+++.+|+++...  ...|+.+++++...+++..
T Consensus       325 ~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~~~~  392 (396)
T 3c5m_A          325 LNTKAKSAQKLCK--HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHLEHH  392 (396)
T ss_dssp             EETTTTBCCEEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-----
T ss_pred             EecccCceEEccC--CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccccccc
Confidence            9988766555552  2221          14557888888889888653  3468899988877766654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=97.98  E-value=0.0013  Score=67.31  Aligned_cols=211  Identities=8%  Similarity=-0.063  Sum_probs=131.3

Q ss_pred             CEEEEEe-cccEEEEEcCCCc--------eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE--cC
Q psy952           17 PWLIFSN-KYYVRNMSLDATQ--------YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI--RH   85 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~--------~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~--~~   85 (573)
                      .+|+.+. ...|+..++....        ...+......+..|+|.+....++++-...+.|..+++........+  ..
T Consensus        95 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  174 (402)
T 2aq5_A           95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV  174 (402)
T ss_dssp             TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT
T ss_pred             CEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC
Confidence            4555444 4678888886542        12222334568899999877666666667788999998765444344  33


Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEe-ccC-CCCcceEEEeCCCceEEEEec-CCcCeEEEEecc
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTL-KTA-IQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMD  161 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l-~~~-~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ld  161 (573)
                      ....+..|++.+.++.|+.+. ..+.|.+.++..... ..+ ... ...+..+++.|...+|+.... +....|...++.
T Consensus       175 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~  253 (402)
T 2aq5_A          175 HPDTIYSVDWSRDGALICTSC-RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTK  253 (402)
T ss_dssp             CCSCEEEEEECTTSSCEEEEE-TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETT
T ss_pred             CCCceEEEEECCCCCEEEEEe-cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCc
Confidence            345778899987555555554 568899999875443 333 222 223789999996444444311 235677777776


Q ss_pred             CCCc--EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc--EEEEEeCCccceeEEEeeeCC
Q psy952          162 GSNF--TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH--KHIVISGQKVPHVFALTLFED  230 (573)
Q Consensus       162 G~~~--~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~--~~~l~~~~~~~~p~~ia~~~~  230 (573)
                      ....  ....  .........+++++.+..||++-...+.|...++....  ...+..........+|++..+
T Consensus       254 ~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~  324 (402)
T 2aq5_A          254 HLEEPLSLQE--LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPK  324 (402)
T ss_dssp             BCSSCSEEEE--CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCG
T ss_pred             cccCCceEEe--ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEecc
Confidence            5432  2222  23344567899999999999988778888888887655  444432111234567776443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.95  E-value=0.022  Score=58.06  Aligned_cols=247  Identities=10%  Similarity=0.053  Sum_probs=137.2

Q ss_pred             CceeeCCCCCCEEEEEecccEEEEEcCCCceeecccC-------------------CcceEEEEEEcCCCEEEEEECCCC
Q psy952            7 STCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQD-------------------LLNVVAMDFHYKENRFYFADVAAK   67 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~-------------------~~~~~~v~~d~~~~~ly~~d~~~~   67 (573)
                      .+|.+......+|+.+....|+..++........+..                   ...+..|+|.+.+..|+. -...+
T Consensus        67 V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s-~~~d~  145 (393)
T 1erj_A           67 VCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT-GAEDR  145 (393)
T ss_dssp             CCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE-EETTS
T ss_pred             EEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE-EcCCC
Confidence            3455544334566665566777777654332211111                   113678999986655554 44567


Q ss_pred             eEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEE
Q psy952           68 TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFS  147 (573)
Q Consensus        68 ~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwt  147 (573)
                      .|+.+++........+......+..|++.+.++.|+ +-...+.|.+.++........+........+++.|..+.++.+
T Consensus       146 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  224 (393)
T 1erj_A          146 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA  224 (393)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEE
T ss_pred             eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEE-EecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEE
Confidence            899999876554444444445678888887666554 4456788999898765544333444457889999866665555


Q ss_pred             ecCCcCeEEEEeccCCCcEEEEec-----CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE------------
Q psy952          148 SWNLQAYIGKIGMDGSNFTRILTH-----EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK------------  210 (573)
Q Consensus       148 d~~~~~~I~r~~ldG~~~~~l~~~-----~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~------------  210 (573)
                      -. ....|...++........+..     ...-.....|++.+.+..|+.+ ...+.|...++.....            
T Consensus       225 ~s-~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~d~~v~~wd~~~~~~~~~~~~~~~~~~  302 (393)
T 1erj_A          225 GS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNLQNANNKSDSKTPNSGTC  302 (393)
T ss_dssp             EE-TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEC---------------CE
T ss_pred             Ec-CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE-eCCCEEEEEECCCCCCcccccCCCCCcc
Confidence            42 345566666654332221100     0112234678888766555544 4566777777653211            


Q ss_pred             EEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          211 HIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       211 ~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      .....+. .....++++. ++.++++-...+.|..-+..+++...++..
T Consensus       303 ~~~~~~h-~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~  350 (393)
T 1erj_A          303 EVTYIGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG  350 (393)
T ss_dssp             EEEEECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             eEEEecc-cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC
Confidence            1111121 2234566663 344445555567777777777766555543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.93  E-value=0.0058  Score=68.27  Aligned_cols=223  Identities=12%  Similarity=0.087  Sum_probs=133.0

Q ss_pred             ccEEEEEcC---CCceeeccc------CC-cceEEEEEEcCCCEEEEEECCC----CeEEEEEcCCCcceEEEcCCCCCc
Q psy952           25 YYVRNMSLD---ATQYSLVHQ------DL-LNVVAMDFHYKENRFYFADVAA----KTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        25 ~~I~~i~l~---g~~~~~~~~------~~-~~~~~v~~d~~~~~ly~~d~~~----~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      ..|++++..   +.....++.      .. ....+++|.+.+++|.++-...    ..|+.++++++........+. ..
T Consensus       133 ~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~-~~  211 (741)
T 1yr2_A          133 SQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWV-KF  211 (741)
T ss_dssp             CEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEE-ES
T ss_pred             EEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCc-ee
Confidence            457888876   554444321      11 1466889999888887764332    369999998765433221111 12


Q ss_pred             ceeEEeecCCcEEEEeCC-------------CCeEEEEEcCCCce--eEeccCCCC---cceEEEeCCCceEEEEecC--
Q psy952           91 EGLAVDWVGRKLYWLDRH-------------SKQLDVAELDGTNR--KTLKTAIQD---PRGITLHPGIGYVYFSSWN--  150 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~-------------~~~I~~~~ldg~~~--~~l~~~~~~---P~~Iavdp~~g~LYwtd~~--  150 (573)
                      .++++.+. +.||++...             ..+|++.++.+...  +.+......   ..+++++|...+|+++...  
T Consensus       212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~  290 (741)
T 1yr2_A          212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT  290 (741)
T ss_dssp             CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred             ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence            45666656 778887532             23588888865442  233333222   4588899988788877643  


Q ss_pred             -CcCeEEEEeccCC--C-cEEEEecCCCCCCCceEEEeccCCeEEEEeCC---CCeEEEEeCCCC--cEEEEEeCCccce
Q psy952          151 -LQAYIGKIGMDGS--N-FTRILTHEDDIAWPNALTLDYFTERLYWADAH---LDYIASVDLDGK--HKHIVISGQKVPH  221 (573)
Q Consensus       151 -~~~~I~r~~ldG~--~-~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~---~~~I~~~~~dG~--~~~~l~~~~~~~~  221 (573)
                       ....|+..++++.  . .+.|.   .....-... +.+.+++||+....   ..+|+.+++++.  ..+.++... ...
T Consensus       291 ~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~  365 (741)
T 1yr2_A          291 DPVNTVHVARVTNGKIGPVTALI---PDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDN  365 (741)
T ss_dssp             CSCCEEEEEEEETTEECCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSE
T ss_pred             CCcceEEEEECCCCCCcccEEec---CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCe
Confidence             2458999998776  4 45555   222111222 34678899887542   457999999873  445555432 233


Q ss_pred             eEEEeeeCCeEEEecCCC--CceEEEeccCCcceEE
Q psy952          222 VFALTLFEDHIYWTDWNT--KSINRADKFNGRDYRV  255 (573)
Q Consensus       222 p~~ia~~~~~lywtd~~~--~~I~~~~~~~g~~~~~  255 (573)
                      ..++++.+++|+++-...  .+|+.++. +|+..+.
T Consensus       366 l~~~~~~~~~lv~~~~~dg~~~l~~~~~-~g~~~~~  400 (741)
T 1yr2_A          366 LESVGIAGNRLFASYIHDAKSQVLAFDL-DGKPAGA  400 (741)
T ss_dssp             EEEEEEEBTEEEEEEEETTEEEEEEEET-TSCEEEE
T ss_pred             EEEEEEECCEEEEEEEECCEEEEEEEeC-CCCceee
Confidence            457777888888875443  35666663 4543333

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.85  E-value=0.026  Score=55.03  Aligned_cols=245  Identities=9%  Similarity=0.026  Sum_probs=142.8

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCceee-cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSL-VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR   84 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~-~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~   84 (573)
                      .++.+......+|+.+. ...|+..++....... +......+..|+|.+..+.|+.+ ...+.|..+++........+.
T Consensus        26 v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~~~  104 (312)
T 4ery_A           26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSA-SDDKTLKIWDVSSGKCLKTLK  104 (312)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEE-CCCCEEEEEECCCCcEEEEEc
Confidence            34444433334555544 4678888876544433 32334457899999866555544 456789999987654433343


Q ss_pred             CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           85 HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        85 ~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      .....+..+++.+.++.|+ +-...+.|.+.++.... ...+.........|+++|...+|+...  ....|...++...
T Consensus       105 ~~~~~v~~~~~~~~~~~l~-s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~  181 (312)
T 4ery_A          105 GHSNYVFCCNFNPQSNLIV-SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDTASG  181 (312)
T ss_dssp             CCSSCEEEEEECSSSSEEE-EEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTC
T ss_pred             CCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEECCCC
Confidence            3345677888887655554 44456789999987543 333434444578899999666665554  3456777776543


Q ss_pred             Cc-EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCc-cce--eEEEeeeCCeEEEecCCC
Q psy952          164 NF-TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK-VPH--VFALTLFEDHIYWTDWNT  239 (573)
Q Consensus       164 ~~-~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~-~~~--p~~ia~~~~~lywtd~~~  239 (573)
                      .. ..+.  .........+++++.+..|+.+ ...+.|...++..........+.. ...  .......++.++++-...
T Consensus       182 ~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d  258 (312)
T 4ery_A          182 QCLKTLI--DDDNPPVSFVKFSPNGKYILAA-TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED  258 (312)
T ss_dssp             CEEEEEC--CSSCCCEEEEEECTTSSEEEEE-ETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred             ceeeEEe--ccCCCceEEEEECCCCCEEEEE-cCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence            32 2222  2222233568888766666554 456788888887554433333210 011  112222455666666667


Q ss_pred             CceEEEeccCCcceEEEcc
Q psy952          240 KSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       240 ~~I~~~~~~~g~~~~~l~~  258 (573)
                      +.|...+..+++....+..
T Consensus       259 g~i~vwd~~~~~~~~~~~~  277 (312)
T 4ery_A          259 NLVYIWNLQTKEIVQKLQG  277 (312)
T ss_dssp             SCEEEEETTTCCEEEEECC
T ss_pred             CEEEEEECCCchhhhhhhc
Confidence            7787777766665555543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.85  E-value=0.014  Score=59.45  Aligned_cols=226  Identities=11%  Similarity=0.045  Sum_probs=133.7

Q ss_pred             EEEEEe-cccEEEEEcCCCceeecc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952           18 WLIFSN-KYYVRNMSLDATQYSLVH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAV   95 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~~~~~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glav   95 (573)
                      +|+.+. ...|+..++......... .....+..|+|.+....|+ +-...+.|+.+++........+......+..|++
T Consensus       111 ~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  189 (420)
T 3vl1_A          111 RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAI  189 (420)
T ss_dssp             EEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCCCCEEEECCSSCEEEEEE
T ss_pred             EEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEE-EEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEE
Confidence            444443 467888888765544333 3445688999998666555 4456678999998755443334333467888999


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCCcee-Eecc---CC---------------------CCcceEEEeCCCceEEEEecC
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGTNRK-TLKT---AI---------------------QDPRGITLHPGIGYVYFSSWN  150 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~~~~-~l~~---~~---------------------~~P~~Iavdp~~g~LYwtd~~  150 (573)
                      .+.++.|+ +-...+.|.+.++...... .+..   ..                     .....++++|...+|+...  
T Consensus       190 ~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--  266 (420)
T 3vl1_A          190 IDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGH--  266 (420)
T ss_dssp             ETTTTEEE-EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEE--
T ss_pred             cCCCCEEE-EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEc--
Confidence            87665555 4445678988888644332 2221   11                     2234455567555555544  


Q ss_pred             CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc--EEEEEeCCccceeEEEeee
Q psy952          151 LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH--KHIVISGQKVPHVFALTLF  228 (573)
Q Consensus       151 ~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~--~~~l~~~~~~~~p~~ia~~  228 (573)
                      ..+.|...++........+. ...-.....|++.+.+..++++-...+.|...++....  ...+.... -.....+...
T Consensus       267 ~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~~~  344 (420)
T 3vl1_A          267 VSGVITVHNVFSKEQTIQLP-SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVYFA  344 (420)
T ss_dssp             TTSCEEEEETTTCCEEEEEC-CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEEEE
T ss_pred             CCCeEEEEECCCCceeEEcc-cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEEeC
Confidence            35567777776544333331 12233457899987777455555567889998987543  33443322 2234555556


Q ss_pred             CCeEEEecCCCCceEEEeccC
Q psy952          229 EDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       229 ~~~lywtd~~~~~I~~~~~~~  249 (573)
                      .+.++++-...+.|...+..+
T Consensus       345 ~~~~l~s~~~d~~v~iw~~~~  365 (420)
T 3vl1_A          345 AGALFVSSGFDTSIKLDIISD  365 (420)
T ss_dssp             TTEEEEEETTTEEEEEEEECC
T ss_pred             CCCEEEEecCCccEEEEeccC
Confidence            677777766666666555333

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.84  E-value=0.013  Score=56.65  Aligned_cols=229  Identities=11%  Similarity=0.005  Sum_probs=130.5

Q ss_pred             CEEEEEe-cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc---ceEEEcCCCCCcc
Q psy952           17 PWLIFSN-KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE---KERVIRHDSHGLE   91 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~~~i~~~~~~~p~   91 (573)
                      .+|+.+. ...|+..++...... .+......+..|+|.+....|+.+. ..+.|..+++....   ....+......+.
T Consensus        30 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~  108 (313)
T 3odt_A           30 SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGG-KDTMINGVPLFATSGEDPLYTLIGHQGNVC  108 (313)
T ss_dssp             TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEE-TTSCEEEEETTCCTTSCC-CEECCCSSCEE
T ss_pred             CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEec-CCCeEEEEEeeecCCCCcccchhhcccCEE
Confidence            3455444 466888888665433 3333455688999998776666655 45678777765432   1112222334566


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeC-CCceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHP-GIGYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp-~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      .|+++  ++ ++++-...+.|.+.+ .+.....+.........+++.| ...+|+...  ....|...+. +.....+. 
T Consensus       109 ~~~~~--~~-~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~d~-~~~~~~~~-  180 (313)
T 3odt_A          109 SLSFQ--DG-VVISGSWDKTAKVWK-EGSLVYNLQAHNASVWDAKVVSFSENKFLTAS--ADKTIKLWQN-DKVIKTFS-  180 (313)
T ss_dssp             EEEEE--TT-EEEEEETTSEEEEEE-TTEEEEEEECCSSCEEEEEEEETTTTEEEEEE--TTSCEEEEET-TEEEEEEC-
T ss_pred             EEEec--CC-EEEEEeCCCCEEEEc-CCcEEEecccCCCceeEEEEccCCCCEEEEEE--CCCCEEEEec-CceEEEEe-
Confidence            66663  44 445555677888888 4444444444555677888887 444444443  2455655552 21122221 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g  250 (573)
                       ...-.....+++.+. ++ +++-...+.|...++........+... ......|++..+..+++-...+.|...+..++
T Consensus       181 -~~~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          181 -GIHNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTYEGH-ESFVYCIKLLPNGDIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             -SSCSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECTTSCEEEEETTSEEEEECTTTC
T ss_pred             -ccCcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhhhcC-CceEEEEEEecCCCEEEEecCCEEEEEECCCC
Confidence             113344567888754 44 445556778888888754443333332 34567888754433445556677887777777


Q ss_pred             cceEEEcc
Q psy952          251 RDYRVLRN  258 (573)
Q Consensus       251 ~~~~~l~~  258 (573)
                      +....+..
T Consensus       257 ~~~~~~~~  264 (313)
T 3odt_A          257 SLKQVITL  264 (313)
T ss_dssp             CEEEEEEC
T ss_pred             ceeEEEec
Confidence            66655543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=97.83  E-value=0.0064  Score=60.74  Aligned_cols=206  Identities=10%  Similarity=-0.038  Sum_probs=122.7

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc--ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE--KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR  122 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~  122 (573)
                      ..+..|+|.+..+.|+.+ ...+.|+.+++++..  ....+......+..|++.+.++.|+.+. ..+.|.+.++.....
T Consensus         9 ~~i~~~~~s~~~~~l~~~-~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAIC-PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTW   86 (372)
T ss_dssp             SCCCEEEECTTSSEEEEE-CSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEE
T ss_pred             CCeEEEEECCCCCEEEEE-eCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCCee
Confidence            446788999766555544 456788888887664  2222333345788999988655555544 567898888865542


Q ss_pred             e-Ee--ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE---EEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952          123 K-TL--KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT---RILTHEDDIAWPNALTLDYFTERLYWADAH  196 (573)
Q Consensus       123 ~-~l--~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~---~l~~~~~~l~~P~glaiD~~~~~LYw~D~~  196 (573)
                      . .+  ......+..|+++|...+|+....  ...|...+++.....   ..+. ...-.....|++.+.+..|+.+ ..
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~-~~  162 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLLAAG-SC  162 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEEEEE-ET
T ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeC--CCEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCEEEEE-cC
Confidence            2 22  234456889999997777776663  455655555544421   1110 1223445788998766555554 45


Q ss_pred             CCeEEEEeCC-------------------CCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          197 LDYIASVDLD-------------------GKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       197 ~~~I~~~~~d-------------------G~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      .+.|...++.                   +.....+ ... ......|++. ++.++++-...+.|...+..+++....+
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  240 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSS-CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  240 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCC-SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEec-CCC-CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence            6777777753                   2222222 121 2346677773 3445555456677888887777766655


Q ss_pred             cc
Q psy952          257 RN  258 (573)
Q Consensus       257 ~~  258 (573)
                      ..
T Consensus       241 ~~  242 (372)
T 1k8k_C          241 AS  242 (372)
T ss_dssp             EC
T ss_pred             cc
Confidence            44

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=97.82  E-value=0.016  Score=59.13  Aligned_cols=225  Identities=12%  Similarity=0.024  Sum_probs=128.2

Q ss_pred             ecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952           23 NKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL  102 (573)
Q Consensus        23 ~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L  102 (573)
                      ....|+..++............ .+..+.+-...+.++++-...+.|..+++.......++......+..|++.+.++.|
T Consensus        76 ~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  154 (420)
T 3vl1_A           76 LDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL  154 (420)
T ss_dssp             ETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEE
T ss_pred             cCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEE
Confidence            3557777777654332222222 344443333455555555567789888887655444443444678889998765545


Q ss_pred             EEEeCCCCeEEEEEcCC-CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecC-CC------
Q psy952          103 YWLDRHSKQLDVAELDG-TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE-DD------  174 (573)
Q Consensus       103 Y~td~~~~~I~~~~ldg-~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~-~~------  174 (573)
                      + +-...+.|.+.++.. .....+.........|+++|...+|+...  ....|...++........+... ..      
T Consensus       155 ~-s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~  231 (420)
T 3vl1_A          155 I-SSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS--LDGTIRLWECGTGTTIHTFNRKENPHDGVNS  231 (420)
T ss_dssp             E-EEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEE--TTSCEEEEETTTTEEEEEECBTTBTTCCEEE
T ss_pred             E-EEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEc--CCCcEEEeECCCCceeEEeecCCCCCCCccE
Confidence            4 445677899999864 44444544556688999999766666554  2455666665533322222100 00      


Q ss_pred             ---------------CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC-Ce-EEEecC
Q psy952          175 ---------------IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE-DH-IYWTDW  237 (573)
Q Consensus       175 ---------------l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~-~~-lywtd~  237 (573)
                                     ......+++++.+..| ++-...+.|...++...................|++.. +. ++++-.
T Consensus       232 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~  310 (420)
T 3vl1_A          232 IALFVGTDRQLHEISTSKKNNLEFGTYGKYV-IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY  310 (420)
T ss_dssp             EEEEECCCSSCGGGCCCCCCTTCSSCTTEEE-EEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred             EEEecCCcceeeecccCcccceEEcCCCCEE-EEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence                           1222345555544444 44445677888888655543333322134567777743 33 666655


Q ss_pred             CCCceEEEeccCCcc
Q psy952          238 NTKSINRADKFNGRD  252 (573)
Q Consensus       238 ~~~~I~~~~~~~g~~  252 (573)
                      ..+.|...+..++..
T Consensus       311 ~dg~i~vwd~~~~~~  325 (420)
T 3vl1_A          311 ENGMLAQWDLRSPEC  325 (420)
T ss_dssp             TTSEEEEEETTCTTS
T ss_pred             CCCeEEEEEcCCCcC
Confidence            667888777666643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.82  E-value=0.0056  Score=67.84  Aligned_cols=229  Identities=8%  Similarity=0.047  Sum_probs=135.5

Q ss_pred             CEEEEEec------ccEEEEEcCCCceeecccCC-------cceEEEEEEcCCCEEEEEECCC----CeEEEEEcCCCcc
Q psy952           17 PWLIFSNK------YYVRNMSLDATQYSLVHQDL-------LNVVAMDFHYKENRFYFADVAA----KTIYRSRVGSTEK   79 (573)
Q Consensus        17 ~~l~~s~~------~~I~~i~l~g~~~~~~~~~~-------~~~~~v~~d~~~~~ly~~d~~~----~~I~~~~~~g~~~   79 (573)
                      .+++|...      ..|++++..+...+.+...-       ..+.+++|.+.+++|.++-...    ..|+.++++++..
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~  159 (695)
T 2bkl_A           80 GRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW  159 (695)
T ss_dssp             TEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB
T ss_pred             CEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC
Confidence            35555542      35788888766555443211       1467899999888877664322    5799999987653


Q ss_pred             eEEEcCCCCCc--ceeEEeecCCcEEEEeCC------------CCeEEEEEcCCCce--eEeccCC---CCcceEEEeCC
Q psy952           80 ERVIRHDSHGL--EGLAVDWVGRKLYWLDRH------------SKQLDVAELDGTNR--KTLKTAI---QDPRGITLHPG  140 (573)
Q Consensus        80 ~~i~~~~~~~p--~glavD~~~~~LY~td~~------------~~~I~~~~ldg~~~--~~l~~~~---~~P~~Iavdp~  140 (573)
                      ..  ...+...  .++++.+.++.||++...            ...|++.++.+...  +.+....   ....+++++|.
T Consensus       160 ~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpD  237 (695)
T 2bkl_A          160 SK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRD  237 (695)
T ss_dssp             CS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTT
T ss_pred             cC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCC
Confidence            20  1111222  567777777788888642            23499999886553  2333322   23458899998


Q ss_pred             CceEEEEecCC--cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC---CCCeEEEEeCCCCcE---EE
Q psy952          141 IGYVYFSSWNL--QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA---HLDYIASVDLDGKHK---HI  212 (573)
Q Consensus       141 ~g~LYwtd~~~--~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~---~~~~I~~~~~dG~~~---~~  212 (573)
                      ..+|+++....  ...|+..+..+...+.|..  . ........ .+.++ ||+...   ...+|+++++++...   +.
T Consensus       238 G~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~--~-~~~~~~~~-~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~  312 (695)
T 2bkl_A          238 GKYLFVYILRGWSENDVYWKRPGEKDFRLLVK--G-VGAKYEVH-AWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKE  312 (695)
T ss_dssp             SCCEEEEEEETTTEEEEEEECTTCSSCEEEEE--C-SSCCEEEE-EETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEE
T ss_pred             CCEEEEEEeCCCCceEEEEEcCCCCceEEeec--C-CCceEEEE-ecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeE
Confidence            88888876432  3478777765545555552  1 11122222 24455 777643   357899999976552   44


Q ss_pred             EEeCCccceeEEEeeeCCeEEEecCCC--CceEEEeccCCcce
Q psy952          213 VISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADKFNGRDY  253 (573)
Q Consensus       213 l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~~~g~~~  253 (573)
                      ++....-....++++.+++|+++-...  .+|+.++. +|+..
T Consensus       313 l~~~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~-~g~~~  354 (695)
T 2bkl_A          313 IVPEDSSASLLSVSIVGGHLSLEYLKDATSEVRVATL-KGKPV  354 (695)
T ss_dssp             EECCCSSCEEEEEEEETTEEEEEEEETTEEEEEEEET-TCCEE
T ss_pred             EecCCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeC-CCCee
Confidence            443211223566777888888875443  34566653 44433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.79  E-value=0.0082  Score=66.61  Aligned_cols=221  Identities=12%  Similarity=0.094  Sum_probs=131.6

Q ss_pred             cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC---------------CeEEEEEcCCCcce-EEEcCCC--
Q psy952           26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA---------------KTIYRSRVGSTEKE-RVIRHDS--   87 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~---------------~~I~~~~~~g~~~~-~i~~~~~--   87 (573)
                      .|+.+++.+............+.+++|.+.++.||++....               ..|++.++.+...+ .++...-  
T Consensus       152 ~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~  231 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE  231 (710)
T ss_dssp             EEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             EEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCC
Confidence            78999998765432211111245789999889999986532               35999999765432 2332221  


Q ss_pred             -CCcceeEEeecCCcEEEEeC-C---CCeEEEEEcCC------C--ceeEeccCCCCcceEEEeCCCceEEEEecC--Cc
Q psy952           88 -HGLEGLAVDWVGRKLYWLDR-H---SKQLDVAELDG------T--NRKTLKTAIQDPRGITLHPGIGYVYFSSWN--LQ  152 (573)
Q Consensus        88 -~~p~glavD~~~~~LY~td~-~---~~~I~~~~ldg------~--~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~--~~  152 (573)
                       ....++++.+.++.|+++-. .   ...|++.++++      .  ..+.|...... ..-.+++..+.||+....  ..
T Consensus       232 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~  310 (710)
T 2xdw_A          232 PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPN  310 (710)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTT
T ss_pred             CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCC
Confidence             23457888888888888653 2   46899999875      3  23444433222 223467767888877532  24


Q ss_pred             CeEEEEeccCCC---cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC--eEEEEeC-CCCcEEEEEeCCccceeEEEe
Q psy952          153 AYIGKIGMDGSN---FTRILTHEDDIAWPNALTLDYFTERLYWADAHLD--YIASVDL-DGKHKHIVISGQKVPHVFALT  226 (573)
Q Consensus       153 ~~I~r~~ldG~~---~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~--~I~~~~~-dG~~~~~l~~~~~~~~p~~ia  226 (573)
                      .+|++.++++..   .+.++. ...-....++++. .+++|+++-...+  +|+.+++ +|...+.|...  .....+++
T Consensus       311 ~~l~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~~-~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~  386 (710)
T 2xdw_A          311 YRLINIDFTDPEESKWKVLVP-EHEKDVLEWVACV-RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYS  386 (710)
T ss_dssp             CEEEEEETTSCCGGGCEEEEC-CCSSCEEEEEEEE-TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEE
T ss_pred             CEEEEEeCCCCCcccceeccC-CCCCCeEEEEEEE-cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEe
Confidence            589999998764   255652 1111133466665 4677877754443  6888888 66644444322  23455565


Q ss_pred             e--eCCeEEEe--cC-CCCceEEEeccCCc
Q psy952          227 L--FEDHIYWT--DW-NTKSINRADKFNGR  251 (573)
Q Consensus       227 ~--~~~~lywt--d~-~~~~I~~~~~~~g~  251 (573)
                      +  .++.|+++  .. .-.+|+..+..+|+
T Consensus       387 ~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          387 GQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             CCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             cCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            5  34456654  22 34578888876665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.78  E-value=0.0085  Score=67.15  Aligned_cols=208  Identities=11%  Similarity=0.016  Sum_probs=131.0

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-e
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-R  122 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~  122 (573)
                      ...+.+|+|++.+..|..+. ..+.|..+++........+...-..+..+++.+.++.|..+. ..+.|.+.++.... .
T Consensus        13 ~~~v~~i~~sp~~~~la~~~-~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-DDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEE-TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-TTSEEEEEETTTCCEE
T ss_pred             CCceEEEEECCCCCEEEEEe-CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe-CCCeEEEEECCCCcEE
Confidence            34588999999777777665 567888889865544333333345788999998777776665 46889999986544 3


Q ss_pred             eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952          123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA  201 (573)
Q Consensus       123 ~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~  201 (573)
                      ..+.........|+++|...+|+...  ....|...+++... ....+  ...-.....+++.+.++.++++-...+.|.
T Consensus        91 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~  166 (814)
T 3mkq_A           91 VDFEAHPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTF--EGHEHFVMCVAFNPKDPSTFASGCLDRTVK  166 (814)
T ss_dssp             EEEECCSSCEEEEEECSSSSEEEEEE--TTSEEEEEEGGGTSEEEEEE--ECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             EEEecCCCCEEEEEEeCCCCEEEEEc--CCCEEEEEECCCCceEEEEE--cCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence            34444556689999999777777655  35677777776542 22233  233344578888874566666666678888


Q ss_pred             EEeCCCCcEEEEEeCCccceeEEEeee---CCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          202 SVDLDGKHKHIVISGQKVPHVFALTLF---EDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       202 ~~~~dG~~~~~l~~~~~~~~p~~ia~~---~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      ..++...................+++.   ++.++++-...+.|...+..+++....+.
T Consensus       167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  225 (814)
T 3mkq_A          167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE  225 (814)
T ss_dssp             EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence            888865443333322212334455553   44455555556677766665555444443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=97.73  E-value=0.0016  Score=72.13  Aligned_cols=189  Identities=12%  Similarity=0.022  Sum_probs=113.2

Q ss_pred             EEEEEecccEEEEEcCCCceeecccC-Cc------------------ceEEEEEEcCCCEEEEEECCC------------
Q psy952           18 WLIFSNKYYVRNMSLDATQYSLVHQD-LL------------------NVVAMDFHYKENRFYFADVAA------------   66 (573)
Q Consensus        18 ~l~~s~~~~I~~i~l~g~~~~~~~~~-~~------------------~~~~v~~d~~~~~ly~~d~~~------------   66 (573)
                      .|+++..+.|+.+++.+.....+... ..                  .+.+++|.+.++.|+++....            
T Consensus       127 ~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~  206 (723)
T 1xfd_A          127 QLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT  206 (723)
T ss_dssp             CEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS
T ss_pred             EEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccC
Confidence            67777778899999987654433222 11                  236899999988888875321            


Q ss_pred             ---------------------CeEEEEEcCCCcceEEEcCC------CCCcceeEEeecCCcEEE-EeCC--CCeEEEEE
Q psy952           67 ---------------------KTIYRSRVGSTEKERVIRHD------SHGLEGLAVDWVGRKLYW-LDRH--SKQLDVAE  116 (573)
Q Consensus        67 ---------------------~~I~~~~~~g~~~~~i~~~~------~~~p~glavD~~~~~LY~-td~~--~~~I~~~~  116 (573)
                                           ..|+.+++.+......+...      ...+..+++.+.++.|+. ++..  ...|.+.+
T Consensus       207 ~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  286 (723)
T 1xfd_A          207 GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCD  286 (723)
T ss_dssp             SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEE
T ss_pred             CcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEe
Confidence                                 16777777665432222211      123455777776666633 3432  24688888


Q ss_pred             cCCCceeEecc----CCCC--cceEEEeCCCceEEEE-ecCC-----cCeEEEEe-ccCCC---cEEEEecCCCCCCCce
Q psy952          117 LDGTNRKTLKT----AIQD--PRGITLHPGIGYVYFS-SWNL-----QAYIGKIG-MDGSN---FTRILTHEDDIAWPNA  180 (573)
Q Consensus       117 ldg~~~~~l~~----~~~~--P~~Iavdp~~g~LYwt-d~~~-----~~~I~r~~-ldG~~---~~~l~~~~~~l~~P~g  180 (573)
                      +.+.....+..    ....  +..+++.|....|+++ ....     ..+|+..+ .++..   .+.+.  .........
T Consensus       287 ~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~--~~~~~~~~~  364 (723)
T 1xfd_A          287 ATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGDWDVTKI  364 (723)
T ss_dssp             TTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSSSCEEEE
T ss_pred             CCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEee--cCCeEEEee
Confidence            87655444432    1111  3588999988888876 3221     23688887 55554   33333  112211223


Q ss_pred             EEEeccCCeEEEEeCC----CCeEEEEeCCCC
Q psy952          181 LTLDYFTERLYWADAH----LDYIASVDLDGK  208 (573)
Q Consensus       181 laiD~~~~~LYw~D~~----~~~I~~~~~dG~  208 (573)
                      +++++++++||++...    ...|++++.+|.
T Consensus       365 ~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~  396 (723)
T 1xfd_A          365 LAYDEKGNKIYFLSTEDLPRRRQLYSANTVGN  396 (723)
T ss_dssp             EEEETTTTEEEEEESSSCTTCCEEEEECSSTT
T ss_pred             eEEcCCCCEEEEEEcCCCCcceEEEEEeCCCC
Confidence            6899999999887543    356888888875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.72  E-value=0.014  Score=58.31  Aligned_cols=240  Identities=7%  Similarity=-0.013  Sum_probs=129.6

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCcee---ecccCCcceEEEEEEcC-CCEEEEEECCCCeEEEEEcCCCc--c
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQYS---LVHQDLLNVVAMDFHYK-ENRFYFADVAAKTIYRSRVGSTE--K   79 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~---~~~~~~~~~~~v~~d~~-~~~ly~~d~~~~~I~~~~~~g~~--~   79 (573)
                      .+|.+......+|+.+. ...|+..++.+....   .+......+..|+|.+. .+.++++-...+.|..+++....  .
T Consensus        14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~   93 (379)
T 3jrp_A           14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ   93 (379)
T ss_dssp             EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeE
Confidence            34444433345666654 567888888643222   22223455789999755 13444444456778888887654  2


Q ss_pred             eEEEcCCCCCcceeEEeecC-CcEEEEeCCCCeEEEEEcCCCce---eEeccCCCCcceEEEeCC------------Cce
Q psy952           80 ERVIRHDSHGLEGLAVDWVG-RKLYWLDRHSKQLDVAELDGTNR---KTLKTAIQDPRGITLHPG------------IGY  143 (573)
Q Consensus        80 ~~i~~~~~~~p~glavD~~~-~~LY~td~~~~~I~~~~ldg~~~---~~l~~~~~~P~~Iavdp~------------~g~  143 (573)
                      ...+......+..|++.+.. +.++++-...+.|.+.++.....   ..+.........|+++|.            .+.
T Consensus        94 ~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  173 (379)
T 3jrp_A           94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR  173 (379)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTC
T ss_pred             eeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCC
Confidence            22233234578888888762 34444445678899999876522   222244455788999984            344


Q ss_pred             EEEEecCCcCeEEEEeccCCCcE-EEE-ecCCCCCCCceEEEeccC--CeEEEEeCCCCeEEEEeCCCCc---EEEEEeC
Q psy952          144 VYFSSWNLQAYIGKIGMDGSNFT-RIL-THEDDIAWPNALTLDYFT--ERLYWADAHLDYIASVDLDGKH---KHIVISG  216 (573)
Q Consensus       144 LYwtd~~~~~~I~r~~ldG~~~~-~l~-~~~~~l~~P~glaiD~~~--~~LYw~D~~~~~I~~~~~dG~~---~~~l~~~  216 (573)
                      ++++-. ....|...++...... .++ .....-.....|++.+..  +.++++-...+.|...++....   ...+...
T Consensus       174 ~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  252 (379)
T 3jrp_A          174 KFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKE  252 (379)
T ss_dssp             EEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSS
T ss_pred             EEEEEe-CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecc
Confidence            444432 2455666666533322 221 102223345689998773  5555555566777777776542   2222221


Q ss_pred             -CccceeEEEeee--CCeEEEecCCCCceEEEecc
Q psy952          217 -QKVPHVFALTLF--EDHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       217 -~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~  248 (573)
                       ........+++.  +..|+.+. ..+.|...+..
T Consensus       253 ~~~~~~v~~~~~s~~g~~l~~~~-~dg~i~iw~~~  286 (379)
T 3jrp_A          253 EKFPDVLWRASWSLSGNVLALSG-GDNKVTLWKEN  286 (379)
T ss_dssp             SCCSSCEEEEEECSSSCCEEEEE-SSSSEEEEEEE
T ss_pred             ccCCCcEEEEEEcCCCCEEEEec-CCCcEEEEeCC
Confidence             112345667763  33454443 35556555433

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.72  E-value=0.0016  Score=67.55  Aligned_cols=206  Identities=10%  Similarity=0.023  Sum_probs=130.9

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC--CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH--DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK  123 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~--~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~  123 (573)
                      .+.+|+|++....|..+-...+.|...+++......++..  .-..+.+|++.+..++++++-+..+.|.+.++.+...+
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            4789999998877777777788999999876554444321  23578899998777777778778889999999887766


Q ss_pred             Eecc---CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeE
Q psy952          124 TLKT---AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI  200 (573)
Q Consensus       124 ~l~~---~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  200 (573)
                      ++..   .......++++|...+|+...  ..+.|...+++|.....+.   ..-.....|++.+.+..++.+-...+.|
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~i~~wd~~~~~~~~~~---~h~~~v~~v~~~p~~~~~~~s~s~d~~v  275 (435)
T 4e54_B          201 VFASSDTINIWFCSLDVSASSRMVVTGD--NVGNVILLNMDGKELWNLR---MHKKKVTHVALNPCCDWFLATASVDQTV  275 (435)
T ss_dssp             EEECCSSCSCCCCCEEEETTTTEEEEEC--SSSBEEEEESSSCBCCCSB---CCSSCEEEEEECTTCSSEEEEEETTSBC
T ss_pred             EEeccCCCCccEEEEEECCCCCEEEEEe--CCCcEeeeccCcceeEEEe---cccceEEeeeecCCCceEEEEecCccee
Confidence            6553   223357899999655555443  3567888888876543322   2223346888888777777766666777


Q ss_pred             EEEeCCCCc-EEEEEe-CCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          201 ASVDLDGKH-KHIVIS-GQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       201 ~~~~~dG~~-~~~l~~-~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      ...++.... ...+.. ........+|++. .+.++++-...+.|...+..++.....+
T Consensus       276 ~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~  334 (435)
T 4e54_B          276 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL  334 (435)
T ss_dssp             CEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred             eEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence            666664322 111111 1101223556653 3444555555667776666666554443

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=97.72  E-value=0.042  Score=53.58  Aligned_cols=207  Identities=12%  Similarity=0.052  Sum_probs=124.4

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-ee
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RK  123 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~  123 (573)
                      ..+.+|+|.+.+..|.-+ ...+.|...++........+......+..+++.+.++.|+ +-...+.|.+.++.... ..
T Consensus        14 ~~V~~~~fsp~~~~l~s~-~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~s~d~~i~vwd~~~~~~~~   91 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTT-LYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWII-VGSDDFRIRVFNYNTGEKVV   91 (304)
T ss_dssp             SCEEEEEECSSSSEEEEE-ETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEE-EEETTSEEEEEETTTCCEEE
T ss_pred             CceEEEEECCCCCEEEEE-cCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEE-EECCCCEEEEEECCCCcEEE
Confidence            457899999876665544 4567898889875543323333334567788887655554 44467889999986443 34


Q ss_pred             EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952          124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS  202 (573)
Q Consensus       124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  202 (573)
                      .+.........|+++|...+|+-..  ....|..-++.... ....+  ...-.....+++.+.++.++.+-...+.|..
T Consensus        92 ~~~~h~~~v~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~i  167 (304)
T 2ynn_A           92 DFEAHPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTF--EGHEHFVMCVAFNPKDPSTFASGCLDRTVKV  167 (304)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEE--TTSCEEEEEGGGTTEEEEEE--CCCCSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred             EEeCCCCcEEEEEEcCCCCEEEEEC--CCCeEEEEECCCCcchhhhh--cccCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence            4444555688999999766555443  35567666665432 22233  2333345788888766666666667788888


Q ss_pred             EeCCCCcE-EEEEeCCccceeEEEeee---CCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          203 VDLDGKHK-HIVISGQKVPHVFALTLF---EDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       203 ~~~dG~~~-~~l~~~~~~~~p~~ia~~---~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      .++..... ..+..+. ......+++.   ++.++++-...+.|..-+..+++....+..
T Consensus       168 wd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~  226 (304)
T 2ynn_A          168 WSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG  226 (304)
T ss_dssp             EETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC
Confidence            88754333 2232221 1223344442   344555655667777777666655555443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.71  E-value=0.0066  Score=67.25  Aligned_cols=218  Identities=13%  Similarity=0.158  Sum_probs=126.6

Q ss_pred             ccEEEEEcCCCceeec-ccCCcceEEEEEEcCCCEEEEEECC------------CCeEEEEEcCCCcc--eEEEcCCC--
Q psy952           25 YYVRNMSLDATQYSLV-HQDLLNVVAMDFHYKENRFYFADVA------------AKTIYRSRVGSTEK--ERVIRHDS--   87 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~-~~~~~~~~~v~~d~~~~~ly~~d~~------------~~~I~~~~~~g~~~--~~i~~~~~--   87 (573)
                      ..|+.+++++.+.... +... ...+++|. .++.||++...            ...|++.++.....  ..|....-  
T Consensus       155 ~~i~v~dl~tg~~~~~~~~~~-k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~  232 (693)
T 3iuj_A          155 REIHLMDVESKQPLETPLKDV-KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ  232 (693)
T ss_dssp             EEEEEEETTTCSEEEEEEEEE-ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG
T ss_pred             EEEEEEECCCCCCCccccCCc-eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC
Confidence            4688888876653221 1111 12456787 78888887644            24699998865432  33333221  


Q ss_pred             -CCcceeEEeecCCcEEEEeC---CCCeEEEEEcCCC--ceeEeccCCCCcceEEEeCCCceEEEEecCC--cCeEEEEe
Q psy952           88 -HGLEGLAVDWVGRKLYWLDR---HSKQLDVAELDGT--NRKTLKTAIQDPRGITLHPGIGYVYFSSWNL--QAYIGKIG  159 (573)
Q Consensus        88 -~~p~glavD~~~~~LY~td~---~~~~I~~~~ldg~--~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~--~~~I~r~~  159 (573)
                       ....++++.+.++.|+++-.   ....|++.++++.  ..+.|......-... +++..+.||+.....  ..+|++++
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d  311 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVD  311 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence             12346777777888877653   2358999998754  334444332222222 556577777765332  46899999


Q ss_pred             ccCCCc---EEEEecCCCCCCCceEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeE
Q psy952          160 MDGSNF---TRILTHEDDIAWPNALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHI  232 (573)
Q Consensus       160 ldG~~~---~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~l  232 (573)
                      +++...   +.|+  ...-..   +.+.+.+++|+++-...  .+|+.++++|...+.|.... .....+++.  .++.|
T Consensus       312 ~~~~~~~~~~~l~--~~~~~~---~~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l~~p~-~~~~~~~~~~~d~~~l  385 (693)
T 3iuj_A          312 AANPGPAHWRDLI--PERQQV---LTVHSGSGYLFAEYMVDATARVEQFDYEGKRVREVALPG-LGSVSGFNGKHDDPAL  385 (693)
T ss_dssp             TTSCCGGGCEEEE--CCCSSC---EEEEEETTEEEEEEEETTEEEEEEECTTSCEEEEECCSS-SSEEEECCCCTTCSCE
T ss_pred             CCCCCccccEEEe--cCCCCE---EEEEEECCEEEEEEEECCeeEEEEEECCCCeeEEeecCC-CceEEeeecCCCCCEE
Confidence            987654   5666  232222   25555688888875444  47899999987766553322 223334443  34556


Q ss_pred             EEec--C-CCCceEEEeccCCc
Q psy952          233 YWTD--W-NTKSINRADKFNGR  251 (573)
Q Consensus       233 ywtd--~-~~~~I~~~~~~~g~  251 (573)
                      +++-  . .-..|+..+..+++
T Consensus       386 ~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          386 YFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEecCCCCCCEEEEEECCCCe
Confidence            5542  1 23678888765554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=97.70  E-value=0.012  Score=63.14  Aligned_cols=205  Identities=8%  Similarity=-0.065  Sum_probs=126.8

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC----cceEEEcCCCCC-cceeEEee--cCCcEEEEeCCCCeEEEEE
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST----EKERVIRHDSHG-LEGLAVDW--VGRKLYWLDRHSKQLDVAE  116 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~----~~~~i~~~~~~~-p~glavD~--~~~~LY~td~~~~~I~~~~  116 (573)
                      ...+..|+|++.++.|.++.  .+.|..++++..    .....+...-.. +..|++.+  .++.|+.+. ..+.|.+.+
T Consensus        18 ~~~v~~~~~spdg~~l~~~~--~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~-~dg~v~vw~   94 (615)
T 1pgu_A           18 RNFTTHLSYDPTTNAIAYPC--GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-ESGKVIVWG   94 (615)
T ss_dssp             TTCCCCCEEETTTTEEEEEE--TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-TTSEEEEEE
T ss_pred             cCceeEEEECCCCCEEEEec--CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec-CCCEEEEEe
Confidence            34578899999888888877  568888888754    343344433356 88999998  666565554 467888888


Q ss_pred             cC-C--------CceeEeccCCCCcceEEEeCCCceEEEEecCCc--CeEEEEeccCCCcEEEEecCCCCCCCceEEEec
Q psy952          117 LD-G--------TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQ--AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY  185 (573)
Q Consensus       117 ld-g--------~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~--~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~  185 (573)
                      +. +        .....+.........|+++|...+|+.......  ..|...+ .+... ..+  ...-.....+++.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d-~~~~~-~~~--~~~~~~v~~~~~~~  170 (615)
T 1pgu_A           95 WTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSL-GEV--SGHSQRINACHLKQ  170 (615)
T ss_dssp             EEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEE-EEC--CSCSSCEEEEEECS
T ss_pred             CCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE-CCCcc-eee--ecCCccEEEEEECC
Confidence            84 2        222223234456889999998777776653221  3444443 22221 122  23334457889987


Q ss_pred             cCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccc---eeEEEeee-C-CeEEEecCCCCceEEEeccCCcceEEE
Q psy952          186 FTERLYWADAHLDYIASVDLDGKHKHIVISGQKVP---HVFALTLF-E-DHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       186 ~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~---~p~~ia~~-~-~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      .+..++++-...+.|...++........+... ..   ....|++. + +.++++-...+.|...+..+++....+
T Consensus       171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTH-HKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEEEECSS-SCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             CCCcEEEEEeCCCcEEEEeCCCcceeeeeccc-CCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            77656666666788888887654443333332 23   45677774 3 455555445677877776677666555

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.68  E-value=0.00025  Score=74.96  Aligned_cols=111  Identities=10%  Similarity=0.053  Sum_probs=78.9

Q ss_pred             CCCCcceeEEeecCCcEEEEeCC---------------------CCeEEEEEcCCCc-------eeEec-c---------
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRH---------------------SKQLDVAELDGTN-------RKTLK-T---------  127 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~---------------------~~~I~~~~ldg~~-------~~~l~-~---------  127 (573)
                      .+.+|+++++++.++.||++-+.                     .|.|+++..++..       -..++ .         
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            36799999999999999998532                     2779998875421       11121 0         


Q ss_pred             ------------CCCCcceEEEeCCCceEEE-EecCC----------cCeEEEEeccCCCcEEEEecCCCCCCCceEEEe
Q psy952          128 ------------AIQDPRGITLHPGIGYVYF-SSWNL----------QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD  184 (573)
Q Consensus       128 ------------~~~~P~~Iavdp~~g~LYw-td~~~----------~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD  184 (573)
                                  .+..|.+|++|+ .|.||+ ||.+.          ...++++..+....+.++. ......|+||++.
T Consensus       462 ~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~-~P~~aEpnGiafS  539 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFS  539 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEEC
T ss_pred             cccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEe-CCCCccccCCEEC
Confidence                        256699999999 689999 87531          2378898885444444441 3345679999999


Q ss_pred             ccCCeEEEEeCCCC
Q psy952          185 YFTERLYWADAHLD  198 (573)
Q Consensus       185 ~~~~~LYw~D~~~~  198 (573)
                      ++...||++-.+-+
T Consensus       540 PD~ktLfV~vQHPG  553 (592)
T 4a9v_A          540 PDQKTLFVGIQHPG  553 (592)
T ss_dssp             TTSSEEEEEEESTT
T ss_pred             CCCCEEEEEEeCCC
Confidence            99999999865544

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.68  E-value=0.0044  Score=61.66  Aligned_cols=197  Identities=9%  Similarity=0.061  Sum_probs=110.1

Q ss_pred             cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--------------------------CCeEEEEEcCCCcc
Q psy952           26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--------------------------AKTIYRSRVGSTEK   79 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--------------------------~~~I~~~~~~g~~~   79 (573)
                      .|+.+++++.....+..... +.+++|.+.++.|+++...                          ...|++++++++..
T Consensus        86 ~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A           86 EIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             EEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             eEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence            48888988765544433223 7889999888888887532                          35799999987655


Q ss_pred             -eEEEcCCCCCcceeEEeecCCcEEEEeCC--------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC
Q psy952           80 -ERVIRHDSHGLEGLAVDWVGRKLYWLDRH--------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN  150 (573)
Q Consensus        80 -~~i~~~~~~~p~glavD~~~~~LY~td~~--------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~  150 (573)
                       ..+.. .  .+..+++.+.+ .+|.+...        ...|++++ .|. .+.|... ....  .++|...+|+++...
T Consensus       165 ~~~l~~-~--~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l~~~-~~~~--~~spdg~~l~~~~~~  235 (347)
T 2gop_A          165 IEEFEK-P--RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKMFEK-VSFY--AVDSDGERILLYGKP  235 (347)
T ss_dssp             EEEEEE-E--TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEEEEE-ESEE--EEEECSSCEEEEECC
T ss_pred             EeeecC-C--CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCc-eEEeccC-ccee--eECCCCCEEEEEEcc
Confidence             44443 2  66677777655 44545332        33677777 443 3444433 2222  337777778776532


Q ss_pred             C------cCeEEEEeccCCCcEEEEecCCCCCC-Cce-EEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccc
Q psy952          151 L------QAYIGKIGMDGSNFTRILTHEDDIAW-PNA-LTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVP  220 (573)
Q Consensus       151 ~------~~~I~r~~ldG~~~~~l~~~~~~l~~-P~g-laiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~  220 (573)
                      .      ...|+..+ .|. .+.+.   ..... ... +++.  ++ ||++-...  .+|+ ++ +|.. +.+...  ..
T Consensus       236 ~~~~~~~~~~l~~~d-~~~-~~~l~---~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~l~-~~-~g~~-~~~~~~--~~  302 (347)
T 2gop_A          236 EKKYMSEHNKLYIYD-GKE-VMGIL---DEVDRGVGQAKIKD--GK-VYFTLFEEGSVNLY-IW-DGEI-KPIAKG--RH  302 (347)
T ss_dssp             SSSCCCSSCEEEEEC-SSC-EEESS---TTCCSEEEEEEEET--TE-EEEEEEETTEEEEE-EE-SSSE-EEEECS--SS
T ss_pred             ccCCccccceEEEEC-CCc-eEecc---ccCCcccCCccEEc--Cc-EEEEEecCCcEEEE-Ec-CCce-EEEecC--CC
Confidence            1      35788887 443 23332   22222 223 5555  44 66654333  3567 77 6644 334433  23


Q ss_pred             eeEEEeeeCCeEEEec--CCC-CceEEEe
Q psy952          221 HVFALTLFEDHIYWTD--WNT-KSINRAD  246 (573)
Q Consensus       221 ~p~~ia~~~~~lywtd--~~~-~~I~~~~  246 (573)
                      ...++++.. .++++-  ... ..|+.++
T Consensus       303 ~v~~~~~s~-~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          303 WIMGFDVDE-IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred             eEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence            556676655 555542  222 2566665

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=97.67  E-value=0.021  Score=58.68  Aligned_cols=205  Identities=12%  Similarity=0.069  Sum_probs=124.0

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-e
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-K  123 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~  123 (573)
                      ..+..|+|++... ++++-...+.|..+++........+......+..|++.+. +.++++-...+.|.+.++.+... .
T Consensus       109 ~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D~~i~iwd~~~~~~~~  186 (410)
T 1vyh_C          109 SPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLWDFQGFECIR  186 (410)
T ss_dssp             SCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTT-SSEEEEEETTSCCCEEETTSSCEEE
T ss_pred             CcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCceeE
Confidence            3477999998554 5555556778999998766554445444467888999865 45556656678888888876543 2


Q ss_pred             EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952          124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV  203 (573)
Q Consensus       124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~  203 (573)
                      ++.........|+++|...+|+-..  ....|...++........+  ...-.+...+++.+. +.++++-...+.|...
T Consensus       187 ~~~~h~~~V~~v~~~p~~~~l~s~s--~D~~i~~wd~~~~~~~~~~--~~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vw  261 (410)
T 1vyh_C          187 TMHGHDHNVSSVSIMPNGDHIVSAS--RDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQD-GTLIASCSNDQTVRVW  261 (410)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTT-SSEEEEEETTSCEEEE
T ss_pred             EEcCCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEE--eCCCccEEEEEECCC-CCEEEEEcCCCeEEEE
Confidence            3333445678999999665555444  3566777776543332222  233334567777754 4555555566778887


Q ss_pred             eCCCCcEEEEEeCCccceeEEEeeeC---------------------CeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          204 DLDGKHKHIVISGQKVPHVFALTLFE---------------------DHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       204 ~~dG~~~~~l~~~~~~~~p~~ia~~~---------------------~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      ++........+.+. ......|++..                     +.++++-...+.|...+..++.....+.
T Consensus       262 d~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~  335 (410)
T 1vyh_C          262 VVATKECKAELREH-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV  335 (410)
T ss_dssp             ETTTCCEEEEECCC-SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ECCCCceeeEecCC-CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE
Confidence            87655443333322 22344555432                     3455665566677766766665554443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=97.66  E-value=0.051  Score=52.90  Aligned_cols=204  Identities=13%  Similarity=0.047  Sum_probs=122.2

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-ee
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RK  123 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~  123 (573)
                      ..+.+|+|.+.++.|+.+ ...+.|...++........+......+..|++.+.++.|+ +-...+.|.+.++.... ..
T Consensus        24 ~~v~~~~~s~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~i~vwd~~~~~~~~  101 (312)
T 4ery_A           24 KAVSSVKFSPNGEWLASS-SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV-SASDDKTLKIWDVSSGKCLK  101 (312)
T ss_dssp             SCEEEEEECTTSSEEEEE-ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCCEEE
T ss_pred             CcEEEEEECCCCCEEEEe-eCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEE-EECCCCEEEEEECCCCcEEE
Confidence            457899999866655544 4566788888765544444444445778899987655554 44456789999987544 33


Q ss_pred             EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952          124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV  203 (573)
Q Consensus       124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~  203 (573)
                      .+.........++++|...+|+...  ....|...++........+  ...-.....+++.+.+..|+.+ ...+.|...
T Consensus       102 ~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~w  176 (312)
T 4ery_A          102 TLKGHSNYVFCCNFNPQSNLIVSGS--FDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVSS-SYDGLCRIW  176 (312)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEE--TTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSEEEEE-ETTSCEEEE
T ss_pred             EEcCCCCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCEEEEEe--cCCCCcEEEEEEcCCCCEEEEE-eCCCcEEEE
Confidence            3434445578899999766666554  3556777777644433333  2222334678888765555544 456778888


Q ss_pred             eCCCCcE-EEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          204 DLDGKHK-HIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       204 ~~dG~~~-~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      ++..... ..+.... ......+++. .+.++++-...+.|...+..+++....+
T Consensus       177 d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  230 (312)
T 4ery_A          177 DTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY  230 (312)
T ss_dssp             ETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred             ECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            8765443 3332221 2233456653 3444444445567777776666544444

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.66  E-value=2.8e-05  Score=82.97  Aligned_cols=45  Identities=36%  Similarity=0.840  Sum_probs=36.9

Q ss_pred             ceecC-CCcccCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCCCccccC
Q psy952          415 EFACR-NGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIP  469 (573)
Q Consensus       415 ~f~C~-~g~ci~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~~~~c~~  469 (573)
                      +|+|. +|+||+..|+|||.+||+|+|||.+       |....+.|.   ...++|
T Consensus        70 ~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~-------c~~~~~~C~---~~~~~~  115 (537)
T 3ojy_B           70 GFVCAQTGRCVNRRLLCNGDNDCGDQSDEAN-------CRRIYKKCQ---HEMDQY  115 (537)
T ss_dssp             SEECTTTCCEECGGGTTSSSCCSSSSCTTSS-------CSSCSSCCS---SCCBCC
T ss_pred             ccCcCCCCcEeeccccCCCCCCCCCcccccc-------CCCCCCccc---cCcCCC
Confidence            89999 9999999999999999999999976       444456675   334555

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.65  E-value=0.022  Score=57.35  Aligned_cols=231  Identities=6%  Similarity=-0.069  Sum_probs=129.1

Q ss_pred             EEEEE-ecccEEEEEcCCCceeecccCCcceEEEEEEcCCC--EEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           18 WLIFS-NKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKEN--RFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        18 ~l~~s-~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~--~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      +|+.+ ....|+..++..............+..+.+.+...  .++++-...+.|..+++........+......+..|+
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~  193 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS  193 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred             EEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence            34433 35678888888765544444445577888876533  3555556677899999876554444444446788999


Q ss_pred             EeecCCcEEEEeCCCCeEEEEEcCCCc--eeEe---------------ccCCCCcceEEEeCCCceEEEEecCCcCeEEE
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAELDGTN--RKTL---------------KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGK  157 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~ldg~~--~~~l---------------~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r  157 (573)
                      +.+.+..|+++-...+.|.+.++....  ...+               .........|+++|...+|+...  ....|..
T Consensus       194 ~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~v  271 (408)
T 4a11_B          194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG--TDNRMRL  271 (408)
T ss_dssp             ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE--TTSCEEE
T ss_pred             ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec--CCCeEEE
Confidence            998888777777777889999886432  1111               11223478899999666666655  3456777


Q ss_pred             EeccCCCcEEEEecC--CCCCCCceEEEecc-CCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEE
Q psy952          158 IGMDGSNFTRILTHE--DDIAWPNALTLDYF-TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIY  233 (573)
Q Consensus       158 ~~ldG~~~~~l~~~~--~~l~~P~glaiD~~-~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~ly  233 (573)
                      .++............  .....+..+.+... ...+.++ ...+.|...++........+.+. .....+|++. ++.++
T Consensus       272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~v~d~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l  349 (408)
T 4a11_B          272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV-PYGSTIAVYTVYSGEQITMLKGH-YKTVDCCVFQSNFQEL  349 (408)
T ss_dssp             EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE-EETTEEEEEETTTCCEEEEECCC-SSCEEEEEEETTTTEE
T ss_pred             EECCCCccceeccccccccccccceeEEecCCCceEEEE-ecCCEEEEEECcCCcceeeeccC-CCeEEEEEEcCCCCEE
Confidence            776543322211000  00111111222212 2222222 33467777777654443333332 3456677774 34555


Q ss_pred             EecCCCCceEEEeccCCcc
Q psy952          234 WTDWNTKSINRADKFNGRD  252 (573)
Q Consensus       234 wtd~~~~~I~~~~~~~g~~  252 (573)
                      ++-...+.|..-+..+++.
T Consensus       350 ~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          350 YSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             EEEETTSCEEEEEECC---
T ss_pred             EEECCCCeEEEEeCCCCCc
Confidence            5555566676666555443

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.65  E-value=0.047  Score=53.21  Aligned_cols=198  Identities=11%  Similarity=0.012  Sum_probs=107.0

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCc--eee---cccCCcceEEEEEEcC-CCEEEEEECCCCeEEEEEcCCCc-
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQ--YSL---VHQDLLNVVAMDFHYK-ENRFYFADVAAKTIYRSRVGSTE-   78 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~--~~~---~~~~~~~~~~v~~d~~-~~~ly~~d~~~~~I~~~~~~g~~-   78 (573)
                      .+|.+......+|+.+. ...|+..++....  ...   +......+..|+|.+. ++.++++-...+.|..+++.... 
T Consensus        14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~   93 (351)
T 3f3f_A           14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE   93 (351)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred             eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence            44555443344666555 4578888887432  111   2233456889999875 35555555566788888886542 


Q ss_pred             --------ceEEEcCCCCCcceeEEeec--CCcEEEEeCCCCeEEEEEcCCCce-eEe--------c-----cCCCCcce
Q psy952           79 --------KERVIRHDSHGLEGLAVDWV--GRKLYWLDRHSKQLDVAELDGTNR-KTL--------K-----TAIQDPRG  134 (573)
Q Consensus        79 --------~~~i~~~~~~~p~glavD~~--~~~LY~td~~~~~I~~~~ldg~~~-~~l--------~-----~~~~~P~~  134 (573)
                              ....+......+..|++.+.  +..|+ +-...+.|.+.++..... ..+        +     ........
T Consensus        94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (351)
T 3f3f_A           94 ECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA-CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC  172 (351)
T ss_dssp             TTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE-EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred             cccccCcceeeeecccCCceeEEEEcCCCCCcEEE-EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence                    11223333457788888876  44444 444567899988764321 110        0     12334678


Q ss_pred             EEEeCC---CceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCC---eEEEEeCCCCeEEEEeCCC
Q psy952          135 ITLHPG---IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE---RLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       135 Iavdp~---~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~---~LYw~D~~~~~I~~~~~dG  207 (573)
                      +++.|.   ...|..+. . ...|............+......-.....|++.+.+.   .++++-...+.|...++..
T Consensus       173 ~~~~p~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~  249 (351)
T 3f3f_A          173 LSWCPSRFSPEKLAVSA-L-EQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE  249 (351)
T ss_dssp             EEECCCSSSCCEEEEEE-T-TEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEE
T ss_pred             EEeccCCCCCcEEEEec-C-CCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCC
Confidence            888885   44444444 2 2333333222222222221112223446888887652   5555555666666666543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.64  E-value=0.011  Score=58.81  Aligned_cols=143  Identities=6%  Similarity=-0.029  Sum_probs=91.3

Q ss_pred             CEEEEE-ecccEEEEEcCCCc-eeecc--c---CCcceEEEEEEcCC---CEEEEEECCCCeEEEEEcCCCcceEEEcCC
Q psy952           17 PWLIFS-NKYYVRNMSLDATQ-YSLVH--Q---DLLNVVAMDFHYKE---NRFYFADVAAKTIYRSRVGSTEKERVIRHD   86 (573)
Q Consensus        17 ~~l~~s-~~~~I~~i~l~g~~-~~~~~--~---~~~~~~~v~~d~~~---~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~   86 (573)
                      ..++.+ ....|+..++.... ...+.  .   ....+..++|.+..   +.++++-...+.|..+++........+...
T Consensus        35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~  114 (366)
T 3k26_A           35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGH  114 (366)
T ss_dssp             CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESC
T ss_pred             ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCC
Confidence            344444 45678888887432 22221  1   22458899998764   456666667789999998765443334434


Q ss_pred             CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec----cCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK----TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~----~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      ...+..|++.+..++++++-...+.|.+.++........+    .....+..|+++|...+|+.+.  ....|...++.
T Consensus       115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i~d~~  191 (366)
T 3k26_A          115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCG--MDHSLKLWRIN  191 (366)
T ss_dssp             CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEE--TTSCEEEEESC
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEec--CCCCEEEEECC
Confidence            4678889998745666666666789999998754443333    3445689999999766666554  24566666654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.62  E-value=0.0058  Score=68.25  Aligned_cols=219  Identities=14%  Similarity=0.183  Sum_probs=127.0

Q ss_pred             ccEEEEEcCCCceeec-ccCCcceEEEEEEcCCCEEEEEECCC-------------CeEEEEEcCCCcc-eEEEcCCCC-
Q psy952           25 YYVRNMSLDATQYSLV-HQDLLNVVAMDFHYKENRFYFADVAA-------------KTIYRSRVGSTEK-ERVIRHDSH-   88 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~-~~~~~~~~~v~~d~~~~~ly~~d~~~-------------~~I~~~~~~g~~~-~~i~~~~~~-   88 (573)
                      ..|+.+++++...... ... ....+++|.+. +.||++....             ..|++.++.+... ..++...-. 
T Consensus       189 ~~i~v~dl~tg~~~~~~~~~-~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~  266 (741)
T 1yr2_A          189 RTVKFVGVADGKPLADELKW-VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL  266 (741)
T ss_dssp             EEEEEEETTTCCEEEEEEEE-EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTC
T ss_pred             EEEEEEECCCCCCCCccCCC-ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCC
Confidence            3688899987654222 111 11246789888 8899886532             3589999865432 233322212 


Q ss_pred             --CcceeEEeecCCcEEEEeC----CCCeEEEEEcCCC--c-eeEeccCCCCcceEEEeCCCceEEEEecC--CcCeEEE
Q psy952           89 --GLEGLAVDWVGRKLYWLDR----HSKQLDVAELDGT--N-RKTLKTAIQDPRGITLHPGIGYVYFSSWN--LQAYIGK  157 (573)
Q Consensus        89 --~p~glavD~~~~~LY~td~----~~~~I~~~~ldg~--~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~--~~~~I~r  157 (573)
                        ...++++.+.++.|+++-.    ....|++.++++.  . .+.|.......... +.|..+.||+....  ...+|++
T Consensus       267 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~  345 (741)
T 1yr2_A          267 PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVR  345 (741)
T ss_dssp             TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEE
T ss_pred             CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEE
Confidence              2457778777777777653    2458999998765  3 44454333222233 34667778776532  2568999


Q ss_pred             EeccCC--CcEEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCe
Q psy952          158 IGMDGS--NFTRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDH  231 (573)
Q Consensus       158 ~~ldG~--~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~  231 (573)
                      +++++.  ..+.++  ...-....+++++  +++|+++-..  ..+|+.++++|...+.+.... .....++++  .++.
T Consensus       346 ~d~~~~~~~~~~l~--~~~~~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~  420 (741)
T 1yr2_A          346 VDLSGSTPRFDTVV--PESKDNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRH  420 (741)
T ss_dssp             EECSSSSCEEEEEE--CCCSSEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSC
T ss_pred             EeCCCCccccEEEe--cCCCCeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCE
Confidence            999873  345555  2222222455555  7788887544  346888888887555443211 234455555  3445


Q ss_pred             EEEe--c-CCCCceEEEeccCCc
Q psy952          232 IYWT--D-WNTKSINRADKFNGR  251 (573)
Q Consensus       232 lywt--d-~~~~~I~~~~~~~g~  251 (573)
                      |+++  . ..-.+|+..+..+|+
T Consensus       421 l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          421 AYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEcCCCCCCEEEEEECCCCc
Confidence            6544  2 223568888765554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.62  E-value=0.011  Score=59.65  Aligned_cols=206  Identities=9%  Similarity=0.010  Sum_probs=124.6

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc-------------CCCCCcceeEEeecCCcEEEEeCCC
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR-------------HDSHGLEGLAVDWVGRKLYWLDRHS  109 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-------------~~~~~p~glavD~~~~~LY~td~~~  109 (573)
                      ....+..|+|.+.++.++++-...+.|..++++.......+.             .....+..|++.+..+.++++-...
T Consensus        42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d  121 (408)
T 4a11_B           42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD  121 (408)
T ss_dssp             CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred             cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence            345688999998445555555567789888987643221111             1235677888877566677776677


Q ss_pred             CeEEEEEcCCCceeEeccCCCCcceEEEeCCCc---eEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEecc
Q psy952          110 KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIG---YVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF  186 (573)
Q Consensus       110 ~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g---~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~  186 (573)
                      +.|.+.++........+........+++.+...   +|+...  ..+.|...++........+  ...-.....|++.+.
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~d~~~~~~~~~~--~~~~~~v~~~~~~~~  197 (408)
T 4a11_B          122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT--RGPKVQLCDLKSGSCSHIL--QGHRQEILAVSWSPR  197 (408)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEE--SSSSEEEEESSSSCCCEEE--CCCCSCEEEEEECSS
T ss_pred             CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEc--CCCeEEEEeCCCcceeeee--cCCCCcEEEEEECCC
Confidence            899999998766555444445567888877533   444443  3556777777644433333  233344578999988


Q ss_pred             CCeEEEEeCCCCeEEEEeCCCCcE--EEEEe-------------CCccceeEEEeee-CCeEEEecCCCCceEEEeccCC
Q psy952          187 TERLYWADAHLDYIASVDLDGKHK--HIVIS-------------GQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       187 ~~~LYw~D~~~~~I~~~~~dG~~~--~~l~~-------------~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g  250 (573)
                      +.+|+++-...+.|...++.....  ..+..             .........|++. ++.++++-...+.|...+..++
T Consensus       198 ~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          198 YDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             CTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             CCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence            777777666778888888764331  11100             0002345677774 3344444445567777776665


Q ss_pred             cc
Q psy952          251 RD  252 (573)
Q Consensus       251 ~~  252 (573)
                      ..
T Consensus       278 ~~  279 (408)
T 4a11_B          278 EN  279 (408)
T ss_dssp             CB
T ss_pred             cc
Confidence            54

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=97.61  E-value=0.0084  Score=60.19  Aligned_cols=195  Identities=8%  Similarity=-0.027  Sum_probs=120.7

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc-
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR-   84 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-   84 (573)
                      +|.+......+|+.+. ...|+..++........+. ....+..++|.+.+..++++-...+.|+..++........+. 
T Consensus       131 ~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~  210 (344)
T 4gqb_B          131 STVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC  210 (344)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeec
Confidence            4444432234454443 4678888887654433333 345578999998888888887778899999987554332222 


Q ss_pred             -CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC-CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952           85 -HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG-TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG  162 (573)
Q Consensus        85 -~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg-~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG  162 (573)
                       .....+..+++.+.+++++++-...+.|.+.++.. .....+.........|++.|....++.+-. ....|...++..
T Consensus       211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs-~D~~i~vwd~~~  289 (344)
T 4gqb_B          211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS-EDCSLAVLDSSL  289 (344)
T ss_dssp             ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE-TTSCEEEECTTC
T ss_pred             ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe-CCCeEEEEECCC
Confidence             11235678888877888888877788999999864 334444445556789999996655544432 345676666654


Q ss_pred             CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC
Q psy952          163 SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD  206 (573)
Q Consensus       163 ~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d  206 (573)
                      .....+   ...-....+|++.+.+.+|+.+-...++|..-++.
T Consensus       290 ~~~~~~---~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          290 SELFRS---QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             CEEEEE---CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             CcEEEE---cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence            332221   22233456888887777776655555555554443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.55  E-value=0.0097  Score=61.58  Aligned_cols=199  Identities=10%  Similarity=0.014  Sum_probs=118.3

Q ss_pred             CCceeeCCCCCC-EEEEE-ecccEEEEEcCCCceeecc---cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce
Q psy952            6 ESTCKRRDSIKP-WLIFS-NKYYVRNMSLDATQYSLVH---QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE   80 (573)
Q Consensus         6 g~~C~~~~~~~~-~l~~s-~~~~I~~i~l~g~~~~~~~---~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~   80 (573)
                      ..+|.+.....+ +|+.+ ....|+..++.......+.   .....+.+|+|.+.++.++++-...+.|...++.+....
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~  200 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR  200 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence            356776542233 34443 3568888888754432222   223457899999877777777777788999999876655


Q ss_pred             EEEcCCC--CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEE
Q psy952           81 RVIRHDS--HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI  158 (573)
Q Consensus        81 ~i~~~~~--~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~  158 (573)
                      .+.....  .....|++++.+ +++++-...+.|.+.++++.....+........+|+++|....++.+-.. ...|...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~-d~~v~iw  278 (435)
T 4e54_B          201 VFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV-DQTVKIW  278 (435)
T ss_dssp             EEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBCCCSBCCSSCEEEEEECTTCSSEEEEEET-TSBCCEE
T ss_pred             EEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcceeEEEecccceEEeeeecCCCceEEEEecC-cceeeEE
Confidence            5543321  234678887644 45555566789999999887655554445567899999977767766432 3444444


Q ss_pred             eccCC-CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952          159 GMDGS-NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       159 ~ldG~-~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      ++... ....+......-.....|++.+.+.+|+.+ ...+.|...++..
T Consensus       279 d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~-~~D~~i~iwd~~~  327 (435)
T 4e54_B          279 DLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTT-DQKSEIRVYSASQ  327 (435)
T ss_dssp             ETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEE-ESSSCEEEEESSS
T ss_pred             ecccccccceEEEeeeccccccceeECCCCCeeEEE-cCCCEEEEEECCC
Confidence            44321 111111000111223577777666655544 4556777777654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.50  E-value=0.096  Score=53.84  Aligned_cols=226  Identities=12%  Similarity=0.087  Sum_probs=127.6

Q ss_pred             CCceeeCCCCCCEEEEE-ecccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE
Q psy952            6 ESTCKRRDSIKPWLIFS-NKYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI   83 (573)
Q Consensus         6 g~~C~~~~~~~~~l~~s-~~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~   83 (573)
                      +.+|...+  ..+|+.+ ..+.|+..++........+. ....+.+|+++   +.++++-...+.|...++........+
T Consensus       135 ~v~~~~~d--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~  209 (435)
T 1p22_A          135 GVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTL  209 (435)
T ss_dssp             CEEEEECC--SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred             cEEEEEEC--CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            45566653  2344444 45788889887654433333 33457778773   445555566788999998765443333


Q ss_pred             cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee----EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952           84 RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK----TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIG  159 (573)
Q Consensus        84 ~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~----~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~  159 (573)
                      ......+..|+++  . .++++-...+.|.+.++......    .+.........|+++  ..+|+...  ..+.|...+
T Consensus       210 ~~h~~~v~~l~~~--~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~--~dg~i~vwd  282 (435)
T 1p22_A          210 IHHCEAVLHLRFN--N-GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS--GDRTIKVWN  282 (435)
T ss_dssp             CCCCSCEEEEECC--T-TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEE--TTSEEEEEE
T ss_pred             cCCCCcEEEEEEc--C-CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--CCEEEEEe--CCCeEEEEE
Confidence            3333456666654  3 45555556788999998754432    222334446677774  34555554  356777777


Q ss_pred             ccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCC
Q psy952          160 MDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT  239 (573)
Q Consensus       160 ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~  239 (573)
                      +........+  .........++++  +. ++++-...+.|...++........+.+. .....+|++.+.. +++-...
T Consensus       283 ~~~~~~~~~~--~~~~~~v~~~~~~--~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~-l~sg~~d  355 (435)
T 1p22_A          283 TSTCEFVRTL--NGHKRGIACLQYR--DR-LVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCIRFDNKR-IVSGAYD  355 (435)
T ss_dssp             TTTCCEEEEE--ECCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTCCEEEEECCC-SSCEEEEECCSSE-EEEEETT
T ss_pred             CCcCcEEEEE--cCCCCcEEEEEeC--CC-EEEEEeCCCeEEEEECCCCCEEEEEeCC-cCcEEEEEecCCE-EEEEeCC
Confidence            7654433333  2222334556654  44 4444456778888888754443333332 3446677774444 4444455


Q ss_pred             CceEEEeccCC
Q psy952          240 KSINRADKFNG  250 (573)
Q Consensus       240 ~~I~~~~~~~g  250 (573)
                      +.|...+..++
T Consensus       356 g~i~vwd~~~~  366 (435)
T 1p22_A          356 GKIKVWDLVAA  366 (435)
T ss_dssp             SCEEEEEHHHH
T ss_pred             CcEEEEECCCC
Confidence            67776665443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.48  E-value=0.07  Score=51.43  Aligned_cols=220  Identities=11%  Similarity=0.049  Sum_probs=124.0

Q ss_pred             CEEEEEe-cccEEEEEcCCCc----eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952           17 PWLIFSN-KYYVRNMSLDATQ----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLE   91 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~----~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~   91 (573)
                      .+|+.+. ...|+.+++....    ...+......+..|+++  .+.| ++-...+.|..++ .+.... .+......+.
T Consensus        72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l-~~~~~d~~i~~~d-~~~~~~-~~~~~~~~v~  146 (313)
T 3odt_A           72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVV-ISGSWDKTAKVWK-EGSLVY-NLQAHNASVW  146 (313)
T ss_dssp             TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE--TTEE-EEEETTSEEEEEE-TTEEEE-EEECCSSCEE
T ss_pred             CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec--CCEE-EEEeCCCCEEEEc-CCcEEE-ecccCCCcee
Confidence            3444443 4566667665321    12222234457788885  4444 4445567788887 332222 2333335677


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      .+++.+..+.++++-...+.|.+.+.. .....+.. .......+++.|.. .|+...  ....|...++........+ 
T Consensus       147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~--~dg~i~i~d~~~~~~~~~~-  221 (313)
T 3odt_A          147 DAKVVSFSENKFLTASADKTIKLWQND-KVIKTFSGIHNDVVRHLAVVDDG-HFISCS--NDGLIKLVDMHTGDVLRTY-  221 (313)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEETT-EEEEEECSSCSSCEEEEEEEETT-EEEEEE--TTSEEEEEETTTCCEEEEE-
T ss_pred             EEEEccCCCCEEEEEECCCCEEEEecC-ceEEEEeccCcccEEEEEEcCCC-eEEEcc--CCCeEEEEECCchhhhhhh-
Confidence            788877456666666667888888833 23333333 45557899999854 444443  3567888887644433333 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC-CeEEEecCCCCceEEEeccC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE-DHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~~~~~~~  249 (573)
                       ...-.....|++.+.+ +|+ +-...+.|...++........+... ......|++.. +. +++-...+.|...+..+
T Consensus       222 -~~~~~~i~~~~~~~~~-~l~-~~~~dg~v~iwd~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          222 -EGHESFVYCIKLLPNG-DIV-SCGEDRTVRIWSKENGSLKQVITLP-AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             -ECCSSCEEEEEECTTS-CEE-EEETTSEEEEECTTTCCEEEEEECS-SSCEEEEEECTTSC-EEEEETTSCEEEEESCG
T ss_pred             -hcCCceEEEEEEecCC-CEE-EEecCCEEEEEECCCCceeEEEecc-CceEEEEEEccCCC-EEEEeCCCcEEEEeCCC
Confidence             2333455788988655 544 4446778888887655444333332 33566777743 34 34444556666666544


Q ss_pred             Cc
Q psy952          250 GR  251 (573)
Q Consensus       250 g~  251 (573)
                      ++
T Consensus       297 ~~  298 (313)
T 3odt_A          297 SR  298 (313)
T ss_dssp             GG
T ss_pred             Cc
Confidence            43

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.48  E-value=0.048  Score=53.76  Aligned_cols=186  Identities=7%  Similarity=-0.027  Sum_probs=104.9

Q ss_pred             CEEEEEe-cccEEEEEcCCCc--eeecccCCcceEEEEEE------cCCCEEEEEECCCCeEEEEEcCCCc-ceEEEcCC
Q psy952           17 PWLIFSN-KYYVRNMSLDATQ--YSLVHQDLLNVVAMDFH------YKENRFYFADVAAKTIYRSRVGSTE-KERVIRHD   86 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~--~~~~~~~~~~~~~v~~d------~~~~~ly~~d~~~~~I~~~~~~g~~-~~~i~~~~   86 (573)
                      .+|+.+. ...|+..++....  ...+......+..++|.      +..+.| ++-...+.|..+++.... ....+...
T Consensus        81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~  159 (357)
T 3i2n_A           81 RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEI-VTGSRDGTVKVWDPRQKDDPVANMEPV  159 (357)
T ss_dssp             CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEE-EEEETTSCEEEECTTSCSSCSEEECCC
T ss_pred             ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEE-EEEeCCCeEEEEeCCCCCCcceecccc
Confidence            4455444 5678888887544  22333334457778654      334444 455566788888887643 22233221


Q ss_pred             ----CCCcceeE----EeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeC---CCceEEEEecCCcCeE
Q psy952           87 ----SHGLEGLA----VDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHP---GIGYVYFSSWNLQAYI  155 (573)
Q Consensus        87 ----~~~p~gla----vD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp---~~g~LYwtd~~~~~~I  155 (573)
                          ...+..++    +.+. ++++++-...+.|.+.++.................|+++|   ...+|+...  ....|
T Consensus       160 ~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg~i  236 (357)
T 3i2n_A          160 QGENKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATS--LEGKF  236 (357)
T ss_dssp             TTSCCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEE--STTEE
T ss_pred             CCCCCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEEC--CCCeE
Confidence                12455565    3443 4455555566899999998766544444455688999998   566666654  24556


Q ss_pred             EEEeccCCC-cEEEE--ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC
Q psy952          156 GKIGMDGSN-FTRIL--THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD  206 (573)
Q Consensus       156 ~r~~ldG~~-~~~l~--~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d  206 (573)
                      ...++.... ...+.  .....-.....+++.+.+..++++-...+.|...++.
T Consensus       237 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~  290 (357)
T 3i2n_A          237 HVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE  290 (357)
T ss_dssp             EEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred             EEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence            555543221 11110  0012333456888887665466666667777666654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.44  E-value=0.075  Score=52.21  Aligned_cols=203  Identities=12%  Similarity=0.044  Sum_probs=118.8

Q ss_pred             EEEEEe-cccEEEEEcCCCc--e----eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           18 WLIFSN-KYYVRNMSLDATQ--Y----SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~--~----~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      +|+-+. ...|+..++.+..  .    ..+......+..++|.+....|+ +-...+.|...++........+......+
T Consensus        32 ~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~-s~s~D~~v~~wd~~~~~~~~~~~~h~~~v  110 (319)
T 3frx_A           32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDV  110 (319)
T ss_dssp             EEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred             EEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEE-EEeCCCEEEEEECCCCCeeEEEccCCCcE
Confidence            444333 4567766665321  1    11122334577899987655554 44566789999987654333333334577


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCC-----ceEEEEecCCcCeEEEEeccCCCc
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGI-----GYVYFSSWNLQAYIGKIGMDGSNF  165 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~-----g~LYwtd~~~~~~I~r~~ldG~~~  165 (573)
                      ..|++.+.+ .++++-...+.|.+.++.+.....+.........+++.|..     +.++++- +....|...++.....
T Consensus       111 ~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~  188 (319)
T 3frx_A          111 MSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA-GNDKMVKAWNLNQFQI  188 (319)
T ss_dssp             EEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEE-ETTSCEEEEETTTTEE
T ss_pred             EEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE-eCCCEEEEEECCcchh
Confidence            888888754 45555556788999999887776666555567788887743     2233443 2355666666654333


Q ss_pred             EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee
Q psy952          166 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF  228 (573)
Q Consensus       166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~  228 (573)
                      ...+  ...-.....|++.+.+..|. +-...+.|...++........+..  ......|++.
T Consensus       189 ~~~~--~~h~~~v~~~~~sp~g~~l~-s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~s  246 (319)
T 3frx_A          189 EADF--IGHNSNINTLTASPDGTLIA-SAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS  246 (319)
T ss_dssp             EEEE--CCCCSCEEEEEECTTSSEEE-EEETTCEEEEEETTTTEEEEEEEC--CSCEEEEEEC
T ss_pred             heee--cCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEc
Confidence            3222  22333456889887555444 444567888888876544333332  2345677764

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.44  E-value=0.00097  Score=70.48  Aligned_cols=106  Identities=14%  Similarity=0.139  Sum_probs=78.5

Q ss_pred             CCcceEEEEEEcCCCEEEEEECC---------------------CCeEEEEEcCCCc-------ceEEEcC---------
Q psy952           43 DLLNVVAMDFHYKENRFYFADVA---------------------AKTIYRSRVGSTE-------KERVIRH---------   85 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~---------------------~~~I~~~~~~g~~-------~~~i~~~---------   85 (573)
                      .+.+|.++++++.++.||++-.+                     .+.|+|+..++..       .+.++..         
T Consensus       382 ~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~a~~f~W~i~l~~G~p~~~~~~  461 (592)
T 4a9v_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             cccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcccceeeEEEEEEccCCcccccc
Confidence            45679999999999999998432                     2789999876532       2333311         


Q ss_pred             ------------CCCCcceeEEeecCCcEEE-EeCC-----------CCeEEEEEcCCCceeEecc--CCCCcceEEEeC
Q psy952           86 ------------DSHGLEGLAVDWVGRKLYW-LDRH-----------SKQLDVAELDGTNRKTLKT--AIQDPRGITLHP  139 (573)
Q Consensus        86 ------------~~~~p~glavD~~~~~LY~-td~~-----------~~~I~~~~ldg~~~~~l~~--~~~~P~~Iavdp  139 (573)
                                  .+..|.+|+||. .++||+ ||..           .+.|++++.+....+.++.  ....|.||++.|
T Consensus       462 ~~~g~~~~~~~~~fnsPDnL~fd~-~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSP  540 (592)
T 4a9v_A          462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP  540 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred             cccCccCccccCccCCCCceEECC-CCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECC
Confidence                        268899999996 578999 8863           3378888886444555553  346799999999


Q ss_pred             CCceEEEEec
Q psy952          140 GIGYVYFSSW  149 (573)
Q Consensus       140 ~~g~LYwtd~  149 (573)
                      ...+||++-.
T Consensus       541 D~ktLfV~vQ  550 (592)
T 4a9v_A          541 DQKTLFVGIQ  550 (592)
T ss_dssp             TSSEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999999874

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=97.44  E-value=0.0078  Score=60.65  Aligned_cols=195  Identities=8%  Similarity=-0.023  Sum_probs=119.6

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc-
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR-   84 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-   84 (573)
                      +|.+......+|+.+. ...|+..++........+. ....+..|+|.+..+.++++-...+.|+..++........+. 
T Consensus       143 ~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~  222 (357)
T 4g56_B          143 KTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF  222 (357)
T ss_dssp             EEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee
Confidence            4444332223444433 4678888887654433333 345578999998777788887778889888886543322221 


Q ss_pred             -CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952           85 -HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG  162 (573)
Q Consensus        85 -~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG  162 (573)
                       ..-..+..|++.+.+++++.+-...+.|.+.++.... ..++.........|++.|..+.+..+- +....|...++..
T Consensus       223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasg-s~D~~i~iwd~~~  301 (357)
T 4g56_B          223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASI-SEDCTVAVLDADF  301 (357)
T ss_dssp             TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEE-ETTSCEEEECTTS
T ss_pred             ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEE-eCCCEEEEEECCC
Confidence             1224567888887778888776677889999986543 344444445578999999765554443 2345677776664


Q ss_pred             CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC
Q psy952          163 SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD  206 (573)
Q Consensus       163 ~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d  206 (573)
                      .....+.   ..-...++|++.|.++.++.+-...+.|..-++.
T Consensus       302 ~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          302 SEVFRDL---SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             CEEEEEC---CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             CcEeEEC---CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            4322222   2223457888887666666665566666666654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.41  E-value=0.075  Score=57.61  Aligned_cols=234  Identities=9%  Similarity=0.027  Sum_probs=135.1

Q ss_pred             CEEEEEecccEEEEEcCCC-ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cc-eEEEcCCCCCccee
Q psy952           17 PWLIFSNKYYVRNMSLDAT-QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EK-ERVIRHDSHGLEGL   93 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l~g~-~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~-~~i~~~~~~~p~gl   93 (573)
                      ..|+++..+.|+..++... ....+......+..++|.+....| .+-...+.|...++... .. ...+......+..|
T Consensus        31 ~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l-asg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v  109 (611)
T 1nr0_A           31 DKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC-ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI  109 (611)
T ss_dssp             SEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEE
T ss_pred             CEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEE-EEEeCCCCEEEeECCCCcceeeEeecccCCceEEE
Confidence            4777777778888888643 333333344558899999865554 44445678888888532 22 11222223578899


Q ss_pred             EEeecCCcEEEEeCCC---CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952           94 AVDWVGRKLYWLDRHS---KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus        94 avD~~~~~LY~td~~~---~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      ++++.++.|..+....   +.|...+. |....++.........+++.|...+++.+-. ....|...++........+ 
T Consensus       110 ~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s-~D~~v~lwd~~~~~~~~~l-  186 (611)
T 1nr0_A          110 SWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNLTGQARAMNSVDFKPSRPFRIISGS-DDNTVAIFEGPPFKFKSTF-  186 (611)
T ss_dssp             EECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCCCCCSSCEEEEEECSSSSCEEEEEE-TTSCEEEEETTTBEEEEEE-
T ss_pred             EECCCCCEEEEEECCCCceeEEEEeeC-CCCcceecCCCCCceEEEECCCCCeEEEEEe-CCCeEEEEECCCCeEeeee-
Confidence            9998888777665433   24554442 3333334344456789999997665555542 2445555444322222222 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeC-----CccceeEEEeee-CCeEEEecCCCCceE
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISG-----QKVPHVFALTLF-EDHIYWTDWNTKSIN  243 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~-----~~~~~p~~ia~~-~~~lywtd~~~~~I~  243 (573)
                       ...-.....+++.+.+ +++.+-...+.|...++. |.....+...     .......+|++. ++.++.+-...+.|.
T Consensus       187 -~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~  264 (611)
T 1nr0_A          187 -GEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK  264 (611)
T ss_dssp             -CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             -ccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEE
Confidence             2333455789998754 455555566778887764 4333333221     112346778874 455566655667777


Q ss_pred             EEeccCCcceEEE
Q psy952          244 RADKFNGRDYRVL  256 (573)
Q Consensus       244 ~~~~~~g~~~~~l  256 (573)
                      .-+..+++....+
T Consensus       265 lWd~~~~~~~~~~  277 (611)
T 1nr0_A          265 IWNVATLKVEKTI  277 (611)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEeCCCCceeeee
Confidence            7676666555444

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=97.41  E-value=0.036  Score=54.72  Aligned_cols=236  Identities=6%  Similarity=-0.005  Sum_probs=130.3

Q ss_pred             ceeeCCCCCCEEEEEe-----cccEEEEEcCCCceeec--ccCCcceEEEEEEcCC--CEEEEEECCCCeEEEEEcCCCc
Q psy952            8 TCKRRDSIKPWLIFSN-----KYYVRNMSLDATQYSLV--HQDLLNVVAMDFHYKE--NRFYFADVAAKTIYRSRVGSTE   78 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-----~~~I~~i~l~g~~~~~~--~~~~~~~~~v~~d~~~--~~ly~~d~~~~~I~~~~~~g~~   78 (573)
                      ++.+.......|+.+.     ...|+..++.+......  ......+..++|.+..  +.++++-...+.|..+++....
T Consensus        22 ~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  101 (357)
T 3i2n_A           22 FDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE  101 (357)
T ss_dssp             EEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS
T ss_pred             EEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC
Confidence            3444332233555544     56788888876654322  2334567899999874  4555555567789999987654


Q ss_pred             -ceEEEcCCCCCcceeE------EeecCCcEEEEeCCCCeEEEEEcCCCc--eeEecc--C--CCCcceEE----EeCCC
Q psy952           79 -KERVIRHDSHGLEGLA------VDWVGRKLYWLDRHSKQLDVAELDGTN--RKTLKT--A--IQDPRGIT----LHPGI  141 (573)
Q Consensus        79 -~~~i~~~~~~~p~gla------vD~~~~~LY~td~~~~~I~~~~ldg~~--~~~l~~--~--~~~P~~Ia----vdp~~  141 (573)
                       ....+......+..|+      +.+.++.| ++-...+.|.+.++....  ...+..  +  ......++    ++|..
T Consensus       102 ~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l-~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  180 (357)
T 3i2n_A          102 MPVYSVKGHKEIINAIDGIGGLGIGEGAPEI-VTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE  180 (357)
T ss_dssp             SCSEEECCCSSCEEEEEEESGGGCC-CCCEE-EEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC
T ss_pred             ccEEEEEecccceEEEeeccccccCCCccEE-EEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC
Confidence             3333333334555663      33334444 454557789999987543  333322  1  12355666    45655


Q ss_pred             ceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEec---cCCeEEEEeCCCCeEEEEeCCCCc-EEEEE---
Q psy952          142 GYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY---FTERLYWADAHLDYIASVDLDGKH-KHIVI---  214 (573)
Q Consensus       142 g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~---~~~~LYw~D~~~~~I~~~~~dG~~-~~~l~---  214 (573)
                      .+|+...  ....|...++.........   ..-.....+++.+   .+..|+.+ ...+.|...++.... ...+.   
T Consensus       181 ~~l~~~~--~d~~i~i~d~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~  254 (357)
T 3i2n_A          181 RVVCAGY--DNGDIKLFDLRNMALRWET---NIKNGVCSLEFDRKDISMNKLVAT-SLEGKFHVFDMRTQHPTKGFASVS  254 (357)
T ss_dssp             CEEEEEE--TTSEEEEEETTTTEEEEEE---ECSSCEEEEEESCSSSSCCEEEEE-ESTTEEEEEEEEEEETTTEEEEEE
T ss_pred             CEEEEEc--cCCeEEEEECccCceeeec---CCCCceEEEEcCCCCCCCCEEEEE-CCCCeEEEEeCcCCCcccceeeec
Confidence            5555544  3567888887765543333   2233457888887   55555555 456777776654321 11111   


Q ss_pred             -eCCccceeEEEeeeC-Ce-EEEecCCCCceEEEeccCCc
Q psy952          215 -SGQKVPHVFALTLFE-DH-IYWTDWNTKSINRADKFNGR  251 (573)
Q Consensus       215 -~~~~~~~p~~ia~~~-~~-lywtd~~~~~I~~~~~~~g~  251 (573)
                       ... ......|++.. +. ++++-...+.|...+...+.
T Consensus       255 ~~~~-~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          255 EKAH-KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             EECC-SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             cCCC-cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence             122 33556777754 33 66666666677665544443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.38  E-value=0.15  Score=60.04  Aligned_cols=246  Identities=8%  Similarity=-0.042  Sum_probs=141.4

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR   84 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~   84 (573)
                      .+|.+......+|+.+. .+.|+..++...... .+......+.+++|.+.++.|..+. ..+.|..+++........+.
T Consensus       618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~  696 (1249)
T 3sfz_A          618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCS-ADKKVKIWDSATGKLVHTYD  696 (1249)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEe-CCCeEEEEECCCCceEEEEc
Confidence            34555443334555443 467888888655432 3333445688999998766665554 56789999987654433343


Q ss_pred             CCCCCcceeEEeecCC-cEEEEeCCCCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952           85 HDSHGLEGLAVDWVGR-KLYWLDRHSKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG  162 (573)
Q Consensus        85 ~~~~~p~glavD~~~~-~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG  162 (573)
                      .....+..+++.+..+ .++++-...+.|.+.++..... .++.........++++|...+|+...  ..+.|...++..
T Consensus       697 ~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s--~dg~v~vwd~~~  774 (1249)
T 3sfz_A          697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCS--ADGTLRLWDVRS  774 (1249)
T ss_dssp             CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEE--SSSEEEEEEGGG
T ss_pred             CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEE--CCCeEEEEeCCC
Confidence            3445677888876433 4555556678899999875543 33444555688999999665555544  245666666654


Q ss_pred             CCcEEEEecC-----------CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CC
Q psy952          163 SNFTRILTHE-----------DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-ED  230 (573)
Q Consensus       163 ~~~~~l~~~~-----------~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~  230 (573)
                      ......+...           ..-.....+++.+.+..|..+.  .+.|...++...................+++. .+
T Consensus       775 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~--~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~  852 (1249)
T 3sfz_A          775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA--KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD  852 (1249)
T ss_dssp             TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE--TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST
T ss_pred             CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc--CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC
Confidence            3322211100           0111345677887777777765  46788888765544333331113344555553 33


Q ss_pred             eEEEecCCCCceEEEeccCCcceEEEc
Q psy952          231 HIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       231 ~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      .++++-...+.|...+..++.....+.
T Consensus       853 ~~l~~~~~dg~v~vwd~~~~~~~~~~~  879 (1249)
T 3sfz_A          853 HLAVIALSQYCVELWNIDSRLKVADCR  879 (1249)
T ss_dssp             TEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             CEEEEEeCCCeEEEEEcCCCceeeecC
Confidence            444444455666666655554444443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.36  E-value=0.013  Score=65.46  Aligned_cols=193  Identities=13%  Similarity=0.080  Sum_probs=109.3

Q ss_pred             EEEEEecccEEEEEcCCCceeeccc-C------------------CcceEEEEEEcCCCEEEEEECCC------------
Q psy952           18 WLIFSNKYYVRNMSLDATQYSLVHQ-D------------------LLNVVAMDFHYKENRFYFADVAA------------   66 (573)
Q Consensus        18 ~l~~s~~~~I~~i~l~g~~~~~~~~-~------------------~~~~~~v~~d~~~~~ly~~d~~~------------   66 (573)
                      .|+|...+.|+.+++.+.....+.. +                  +....+++|.+.+++|.++....            
T Consensus       125 ~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~  204 (740)
T 4a5s_A          125 KLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYS  204 (740)
T ss_dssp             CEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECC
T ss_pred             EEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeec
Confidence            5666667789988887655433321 1                  11223578888888777653111            


Q ss_pred             -----------------------CeEEEEEcCC---C---cceEEEcC-----CCCCcceeEEeecCCc-EEEEeCCC--
Q psy952           67 -----------------------KTIYRSRVGS---T---EKERVIRH-----DSHGLEGLAVDWVGRK-LYWLDRHS--  109 (573)
Q Consensus        67 -----------------------~~I~~~~~~g---~---~~~~i~~~-----~~~~p~glavD~~~~~-LY~td~~~--  109 (573)
                                             ..|+.+++++   +   ....+...     .......+++.+.++. +|+.....  
T Consensus       205 ~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~  284 (740)
T 4a5s_A          205 DESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY  284 (740)
T ss_dssp             STTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred             CCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence                                   1466667765   4   22222210     1122344556555553 34444332  


Q ss_pred             CeEEEEEcCCCc-------eeEec----cCCCC---cceEEEeCCCceEE-EEe-cCCcCeEEEEeccCCCcEEEEecCC
Q psy952          110 KQLDVAELDGTN-------RKTLK----TAIQD---PRGITLHPGIGYVY-FSS-WNLQAYIGKIGMDGSNFTRILTHED  173 (573)
Q Consensus       110 ~~I~~~~ldg~~-------~~~l~----~~~~~---P~~Iavdp~~g~LY-wtd-~~~~~~I~r~~ldG~~~~~l~~~~~  173 (573)
                      ..|.+.++++..       ..+++    .....   +..+++.|....|+ |.. ......|++.+++|...+.|.  ..
T Consensus       285 ~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT--~g  362 (740)
T 4a5s_A          285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT--KG  362 (740)
T ss_dssp             EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESC--CS
T ss_pred             EEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecc--cC
Confidence            368888877644       22232    11112   55788999776665 553 223568999999998776655  22


Q ss_pred             CCCCCceEEEeccCCeEEEEeCC------CCeEEEEeCCCCcEEEEE
Q psy952          174 DIAWPNALTLDYFTERLYWADAH------LDYIASVDLDGKHKHIVI  214 (573)
Q Consensus       174 ~l~~P~glaiD~~~~~LYw~D~~------~~~I~~~~~dG~~~~~l~  214 (573)
                      ....-.-+.+|  +++||++...      ...|++++++|...+..+
T Consensus       363 ~~~v~~~~~~d--~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~l  407 (740)
T 4a5s_A          363 TWEVIGIEALT--SDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCL  407 (740)
T ss_dssp             SSCEEEEEEEC--SSEEEEEESCGGGCTTCBEEEEEETTEEEEEEES
T ss_pred             CEEEEEEEEEe--CCEEEEEEecCCCCCceeEEEEEECCCCCcceee
Confidence            22111223355  8899998654      347999999987665333

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=97.33  E-value=0.00012  Score=78.20  Aligned_cols=30  Identities=43%  Similarity=0.984  Sum_probs=29.1

Q ss_pred             ceecC-CCcccCCCcccCCCCCCCCCCCCCC
Q psy952          415 EFACR-NGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       415 ~f~C~-~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      +|+|. +|+|||..|+|||.+||+|+|||..
T Consensus        69 ~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~   99 (554)
T 3ojy_A           69 DFQCKETGRCLKRHLVCNGDQDCLDGSDEDD   99 (554)
T ss_dssp             SEECSSSCCEECGGGTTSSSCCSSSCTTSSS
T ss_pred             cCccCCCCEEcccccccCCcccCCCcccccc
Confidence            89999 9999999999999999999999976

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.32  E-value=0.2  Score=51.64  Aligned_cols=232  Identities=15%  Similarity=0.061  Sum_probs=131.3

Q ss_pred             ceeeCCCCCCEEEEE-ecccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952            8 TCKRRDSIKPWLIFS-NKYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s-~~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      +|...+  ..+|+.+ ..+.|+..++........+. ....+..|+|.+.+  ++++-...+.|...++........+..
T Consensus       126 ~~~~~~--~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~  201 (464)
T 3v7d_B          126 TCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEG  201 (464)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEC--CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCCCcEEEEECC
Confidence            455443  2344443 35688888887654433333 34557899997544  555556678899999876544444443


Q ss_pred             CCCCcceeEEeec-CCcEEEEeCCCCeEEEEEcCCCceeE------------------------eccCCCCcceEEEeCC
Q psy952           86 DSHGLEGLAVDWV-GRKLYWLDRHSKQLDVAELDGTNRKT------------------------LKTAIQDPRGITLHPG  140 (573)
Q Consensus        86 ~~~~p~glavD~~-~~~LY~td~~~~~I~~~~ldg~~~~~------------------------l~~~~~~P~~Iavdp~  140 (573)
                      ....+..|++.+. .+.++++-...+.|.+.++.......                        +........  ++.+.
T Consensus       202 h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~  279 (464)
T 3v7d_B          202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGH  279 (464)
T ss_dssp             CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEE--EEEEE
T ss_pred             CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEE--EEcCC
Confidence            4457778888753 44566666667888888876543211                        111111222  33443


Q ss_pred             CceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccc
Q psy952          141 IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVP  220 (573)
Q Consensus       141 ~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~  220 (573)
                      ..+|+...  ....|...++........+  ...-.....+++++.+..|+.+ ...+.|...++........+.+. ..
T Consensus       280 ~~~l~~~~--~d~~i~vwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~sg-~~dg~i~vwd~~~~~~~~~~~~h-~~  353 (464)
T 3v7d_B          280 GNIVVSGS--YDNTLIVWDVAQMKCLYIL--SGHTDRIYSTIYDHERKRCISA-SMDTTIRIWDLENGELMYTLQGH-TA  353 (464)
T ss_dssp             TTEEEEEE--TTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEETTTTEEEEE-ETTSCEEEEETTTTEEEEEECCC-SS
T ss_pred             CCEEEEEe--CCCeEEEEECCCCcEEEEe--cCCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCcEEEEEeCC-CC
Confidence            44555544  2456777776543333233  2333445688998766666654 45678888888654433333332 23


Q ss_pred             eeEEEeeeCCeEEEecCCCCceEEEeccCCcc
Q psy952          221 HVFALTLFEDHIYWTDWNTKSINRADKFNGRD  252 (573)
Q Consensus       221 ~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~  252 (573)
                      ....|++.+. .+++-...+.|...+..++..
T Consensus       354 ~v~~~~~~~~-~l~s~s~dg~v~vwd~~~~~~  384 (464)
T 3v7d_B          354 LVGLLRLSDK-FLVSAAADGSIRGWDANDYSR  384 (464)
T ss_dssp             CEEEEEECSS-EEEEEETTSEEEEEETTTCCE
T ss_pred             cEEEEEEcCC-EEEEEeCCCcEEEEECCCCce
Confidence            4566666544 444444556777766655543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.31  E-value=0.056  Score=53.74  Aligned_cols=202  Identities=7%  Similarity=-0.042  Sum_probs=115.5

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE--EEcCCCCCcceeEEeec-CCcEEEEeCCCCeEEEEEcCCC
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER--VIRHDSHGLEGLAVDWV-GRKLYWLDRHSKQLDVAELDGT  120 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--i~~~~~~~p~glavD~~-~~~LY~td~~~~~I~~~~ldg~  120 (573)
                      ...+..|+|++.+..|..+. ..+.|+.+++.+.....  .+......+..|++.+. .+.++++-...+.|.+.++...
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   89 (379)
T 3jrp_A           11 NELIHDAVLDYYGKRLATCS-SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG   89 (379)
T ss_dssp             CCCEEEEEECSSSSEEEEEE-TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred             cccEEEEEEcCCCCEEEEEE-CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence            34578999998766666554 45678777776432222  23323346677777544 1444455455678999888765


Q ss_pred             ce---eEeccCCCCcceEEEeCC--CceEEEEecCCcCeEEEEeccCC--CcEEEEecCCCCCCCceEEEecc-------
Q psy952          121 NR---KTLKTAIQDPRGITLHPG--IGYVYFSSWNLQAYIGKIGMDGS--NFTRILTHEDDIAWPNALTLDYF-------  186 (573)
Q Consensus       121 ~~---~~l~~~~~~P~~Iavdp~--~g~LYwtd~~~~~~I~r~~ldG~--~~~~l~~~~~~l~~P~glaiD~~-------  186 (573)
                      ..   ..+.........|+++|.  ..+|+.+.  ....|...++...  .....+  .........+++.+.       
T Consensus        90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~  165 (379)
T 3jrp_A           90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGE  165 (379)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCTTSCCCEEEE--ECCTTCEEEEEECCCC------
T ss_pred             ceeEeeeecCCCcceEEEEeCCCCCCCEEEEec--CCCcEEEEecCCCCceeeEEe--cCCCCceEEEEEcCcccccccc
Confidence            42   222234556889999997  45555554  3556777766644  222223  233334567888864       


Q ss_pred             -----CCeEEEEeCCCCeEEEEeCCCCc-EE-EEE--eCCccceeEEEeeeC----CeEEEecCCCCceEEEeccCCc
Q psy952          187 -----TERLYWADAHLDYIASVDLDGKH-KH-IVI--SGQKVPHVFALTLFE----DHIYWTDWNTKSINRADKFNGR  251 (573)
Q Consensus       187 -----~~~LYw~D~~~~~I~~~~~dG~~-~~-~l~--~~~~~~~p~~ia~~~----~~lywtd~~~~~I~~~~~~~g~  251 (573)
                           ++.++++-...+.|...++.... .. .+.  ... ......|++..    +.++++-...+.|...+..++.
T Consensus       166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          166 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             ----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc-cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                 35555555556777777765332 21 221  121 23456777743    4555655556667666655543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.31  E-value=0.16  Score=50.28  Aligned_cols=205  Identities=11%  Similarity=0.038  Sum_probs=117.2

Q ss_pred             CEEEEEe-cccEEEEEcCCCc--ee---ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           17 PWLIFSN-KYYVRNMSLDATQ--YS---LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~--~~---~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      .+|+.+. .+.|+..++....  ..   .+......+..+.|.+ .+.| ++-...+.|...++........+......+
T Consensus       110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~l-~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v  187 (340)
T 1got_B          110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQI-VTSSGDTTCALWDIETGQQTTTFTGHTGDV  187 (340)
T ss_dssp             SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEE-TTEE-EEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECC-CCcE-EEEECCCcEEEEECCCCcEEEEEcCCCCce
Confidence            3444433 4566777775432  11   1122234466777864 4454 444556788888987654433343334567


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL  169 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~  169 (573)
                      ..|++.+. ++++++-...+.|.+.++.... ..++........+|+++|...+|+...  ....|...++.........
T Consensus       188 ~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s--~d~~v~iwd~~~~~~~~~~  264 (340)
T 1got_B          188 MSLSLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS--DDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             EEEEECTT-SSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEE
T ss_pred             EEEEECCC-CCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEc--CCCcEEEEECCCCcEEEEE
Confidence            88888874 4566666677889999986543 344444555688999999655554443  3556777776544332222


Q ss_pred             ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee
Q psy952          170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF  228 (573)
Q Consensus       170 ~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~  228 (573)
                      ...........+++.+.+..|. +-...+.|...++........+.+. ......|++.
T Consensus       265 ~~~~~~~~v~~~~~s~~g~~l~-~g~~d~~i~vwd~~~~~~~~~~~~h-~~~v~~~~~s  321 (340)
T 1got_B          265 SHDNIICGITSVSFSKSGRLLL-AGYDDFNCNVWDALKADRAGVLAGH-DNRVSCLGVT  321 (340)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEE-EEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEEC
T ss_pred             ccCCcccceEEEEECCCCCEEE-EECCCCeEEEEEcccCcEeeEeecC-CCcEEEEEEc
Confidence            1011122346788886555544 4445678888887654443333332 2345566663

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=97.29  E-value=0.053  Score=53.21  Aligned_cols=191  Identities=10%  Similarity=-0.057  Sum_probs=114.5

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc----ceEEEcCCCCCcceeEEeecCC-cEEEEeCCCCeEEEEEc-
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE----KERVIRHDSHGLEGLAVDWVGR-KLYWLDRHSKQLDVAEL-  117 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~----~~~i~~~~~~~p~glavD~~~~-~LY~td~~~~~I~~~~l-  117 (573)
                      ...+.+|+|.+....|+.+. ..+.|+.++++...    ...+.. ....+..|++.+.++ .|+.+. ..+.|.+.++ 
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~-~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~-~dg~i~~wd~~   87 (342)
T 1yfq_A           11 KDYISDIKIIPSKSLLLITS-WDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGT-VQGEILKVDLI   87 (342)
T ss_dssp             SSCEEEEEEEGGGTEEEEEE-TTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEE-TTSCEEEECSS
T ss_pred             CCcEEEEEEcCCCCEEEEEc-CCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEc-CCCeEEEEEec
Confidence            34588999998777666654 55678888876554    333332 235788899988666 565554 5678999999 


Q ss_pred             CCCceeEecc--CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC---------CCcEEEEecCCCCCCCceEEEecc
Q psy952          118 DGTNRKTLKT--AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG---------SNFTRILTHEDDIAWPNALTLDYF  186 (573)
Q Consensus       118 dg~~~~~l~~--~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG---------~~~~~l~~~~~~l~~P~glaiD~~  186 (573)
                      .+.....+..  .......|++.| ..+|+...  ....|...++..         ......   ...-..+..|++.+.
T Consensus        88 ~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~  161 (342)
T 1yfq_A           88 GSPSFQALTNNEANLGICRICKYG-DDKLIAAS--WDGLIEVIDPRNYGDGVIAVKNLNSNN---TKVKNKIFTMDTNSS  161 (342)
T ss_dssp             SSSSEEECBSCCCCSCEEEEEEET-TTEEEEEE--TTSEEEEECHHHHTTBCEEEEESCSSS---SSSCCCEEEEEECSS
T ss_pred             cCCceEeccccCCCCceEEEEeCC-CCEEEEEc--CCCeEEEEcccccccccccccCCeeeE---EeeCCceEEEEecCC
Confidence            8776655555  556688999999 66666554  245666666542         111000   111223456777633


Q ss_pred             CCeEEEEeCCCCeEEEEeCCC-Cc--EEEEEeCCccceeEEEeee--CCeEEEecCCCCceEEEec
Q psy952          187 TERLYWADAHLDYIASVDLDG-KH--KHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       187 ~~~LYw~D~~~~~I~~~~~dG-~~--~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~  247 (573)
                        .|+.+ ...+.|...++.. ..  ........ ...+..|++.  ++.++++-...+.|...+.
T Consensus       162 --~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~  223 (342)
T 1yfq_A          162 --RLIVG-MNNSQVQWFRLPLCEDDNGTIEESGL-KYQIRDVALLPKEQEGYACSSIDGRVAVEFF  223 (342)
T ss_dssp             --EEEEE-ESTTEEEEEESSCCTTCCCEEEECSC-SSCEEEEEECSGGGCEEEEEETTSEEEEEEC
T ss_pred             --cEEEE-eCCCeEEEEECCccccccceeeecCC-CCceeEEEECCCCCCEEEEEecCCcEEEEEE
Confidence              35544 4567788888876 33  22222221 2356677775  3555555555666665443

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.28  E-value=0.07  Score=62.96  Aligned_cols=242  Identities=12%  Similarity=0.039  Sum_probs=145.3

Q ss_pred             ceeeCCCCCCEEEEEecccEEEEEcCCCceee-c-ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952            8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSL-V-HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~-~-~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      +|.+......+|+.+..+.|+.+++....... + ......+..++|.+.+..|+.+ ...+.|..++++.......+..
T Consensus       802 ~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~dg~v~vwd~~~~~~~~~~~~  880 (1249)
T 3sfz_A          802 KCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA-LSQYCVELWNIDSRLKVADCRG  880 (1249)
T ss_dssp             CCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEE-CSSSCEEEEETTTTEEEEEECC
T ss_pred             EEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCceeeecCC
Confidence            34444444557777778889999987654322 2 2334567899999866665554 5567899999876554444444


Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce------------------------------eEe--------cc
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR------------------------------KTL--------KT  127 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~------------------------------~~l--------~~  127 (573)
                      ....+.++++.+.++.|+ +-...+.|.+.++.....                              ..+        ..
T Consensus       881 h~~~v~~v~~spdg~~l~-s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  959 (1249)
T 3sfz_A          881 HLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYL  959 (1249)
T ss_dssp             CSSCEEEEEECTTSSEEE-EEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEE
T ss_pred             CccceEEEEECCCCCEEE-EEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEc
Confidence            456788999987555554 444566777766532100                              000        00


Q ss_pred             CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952          128 AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       128 ~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      .......++++|...+|+....  .+.|...++.........  ...-.....+++.+.+..|..+ ...+.|...++..
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~--~g~i~i~d~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~-~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDE--DGAIKIIELPNNRVFSSG--VGHKKAVRHIQFTADGKTLISS-SEDSVIQVWNWQT 1034 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEET--TSCCEEEETTTTSCEEEC--CCCSSCCCCEEECSSSSCEEEE-CSSSBEEEEETTT
T ss_pred             ccCcEEEEEEcCCCCEEEEEcC--CCCEEEEEcCCCceeeec--ccCCCceEEEEECCCCCEEEEE-cCCCEEEEEECCC
Confidence            1223677888887777766653  456666666544433333  2333455789998766666554 4567888888876


Q ss_pred             CcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          208 KHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       208 ~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      .....+...  ......+++..+..+++-...+.|...+..+++....+..
T Consensus      1035 ~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 1083 (1249)
T 3sfz_A         1035 GDYVFLQAH--QETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTC 1083 (1249)
T ss_dssp             TEEECCBCC--SSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEEC
T ss_pred             CceEEEecC--CCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcc
Confidence            544332221  2345667765555455555567777777777776665543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.25  E-value=0.029  Score=62.05  Aligned_cols=194  Identities=13%  Similarity=0.135  Sum_probs=117.8

Q ss_pred             cCCCEEEEEECCC----CeEEEEEcCCCcceEEEcCC-C-----CCcceeEEeecCCcEEEEeCC----CCeEEEEEcCC
Q psy952           54 YKENRFYFADVAA----KTIYRSRVGSTEKERVIRHD-S-----HGLEGLAVDWVGRKLYWLDRH----SKQLDVAELDG  119 (573)
Q Consensus        54 ~~~~~ly~~d~~~----~~I~~~~~~g~~~~~i~~~~-~-----~~p~glavD~~~~~LY~td~~----~~~I~~~~ldg  119 (573)
                      +.+++||++-...    ..|++...+++..++++..+ +     ....++++.+.++.|.++-..    ...|.+.++++
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            4578888875432    57899998777766665422 1     135678888888887766432    25799999987


Q ss_pred             CceeEeccCCCC--cceEEEeCCCceEEEEecCC-----------cCeEEEEeccCCCc--EEEEecCCCCCCCceEEEe
Q psy952          120 TNRKTLKTAIQD--PRGITLHPGIGYVYFSSWNL-----------QAYIGKIGMDGSNF--TRILTHEDDIAWPNALTLD  184 (573)
Q Consensus       120 ~~~~~l~~~~~~--P~~Iavdp~~g~LYwtd~~~-----------~~~I~r~~ldG~~~--~~l~~~~~~l~~P~glaiD  184 (573)
                      ..... ...+..  ..+++..|....||++....           ...|++.++.+...  +.+......-..-.++++.
T Consensus       157 g~~~~-~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S  235 (695)
T 2bkl_A          157 GEWSK-VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS  235 (695)
T ss_dssp             CCBCS-SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred             CCCcC-CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence            65420 112222  26899999888888886421           34599988876542  3343101111233578899


Q ss_pred             ccCCeEEEEeCC---CCeEEEEeCCCCcEEEEEeCCccceeEEE-eeeCCeEEEe-cC--CCCceEEEeccCCc
Q psy952          185 YFTERLYWADAH---LDYIASVDLDGKHKHIVISGQKVPHVFAL-TLFEDHIYWT-DW--NTKSINRADKFNGR  251 (573)
Q Consensus       185 ~~~~~LYw~D~~---~~~I~~~~~dG~~~~~l~~~~~~~~p~~i-a~~~~~lywt-d~--~~~~I~~~~~~~g~  251 (573)
                      +++.+|+++...   ...|+.++..+...+.|....  ...... ...++ ||++ ++  .+.+|++++..++.
T Consensus       236 pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~--~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          236 RDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGV--GAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             TTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECS--SCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred             CCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCC--CceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence            888888876543   347887776555555555432  112222 23445 6664 43  35788888866654

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=97.23  E-value=0.083  Score=54.09  Aligned_cols=241  Identities=10%  Similarity=0.060  Sum_probs=130.2

Q ss_pred             CCceeeCCCCCCEEEEEe-cccEEEEEcCCCc-----------eeecccCC-------------cceEEEEEEcCCC-EE
Q psy952            6 ESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQ-----------YSLVHQDL-------------LNVVAMDFHYKEN-RF   59 (573)
Q Consensus         6 g~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~-----------~~~~~~~~-------------~~~~~v~~d~~~~-~l   59 (573)
                      ..+|.+......+|+.+. ...|+..++....           ....+.+.             ..+..|+|.+..+ .+
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~  109 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQ  109 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcce
Confidence            445555543344666554 4678888876443           11112222             4478899998763 34


Q ss_pred             EEEECCCCeEEEEEcCCCcce----------------------------------------EEEcCCCCCcceeEEeecC
Q psy952           60 YFADVAAKTIYRSRVGSTEKE----------------------------------------RVIRHDSHGLEGLAVDWVG   99 (573)
Q Consensus        60 y~~d~~~~~I~~~~~~g~~~~----------------------------------------~i~~~~~~~p~glavD~~~   99 (573)
                      +++-...+.|..+++......                                        .+.......+..|++.+.+
T Consensus       110 l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  189 (447)
T 3dw8_B          110 FLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY  189 (447)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS
T ss_pred             EEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC
Confidence            444455667777666432110                                        1112223567788988755


Q ss_pred             CcEEEEeCCCCeEEEEEcC-CCce-eEe------c-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc----E
Q psy952          100 RKLYWLDRHSKQLDVAELD-GTNR-KTL------K-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF----T  166 (573)
Q Consensus       100 ~~LY~td~~~~~I~~~~ld-g~~~-~~l------~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~----~  166 (573)
                      +.|. +- ..+.|.+.++. +... .++      + ........|+++|....++++-. ....|...++.....    .
T Consensus       190 ~~l~-s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~  266 (447)
T 3dw8_B          190 ETYL-SA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS-SKGTIRLCDMRASALCDRHS  266 (447)
T ss_dssp             SEEE-EE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE-TTSCEEEEETTTCSSSCTTC
T ss_pred             CEEE-Ee-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe-CCCeEEEEECcCCcccccee
Confidence            5444 44 58899999988 3222 222      1 23344789999996524444432 355677777664442    2


Q ss_pred             EEEecCCCCC------------CCceEEEeccCCeEEEEeCCCCeEEEEeCC--CCcEEEEEeCCccc------------
Q psy952          167 RILTHEDDIA------------WPNALTLDYFTERLYWADAHLDYIASVDLD--GKHKHIVISGQKVP------------  220 (573)
Q Consensus       167 ~l~~~~~~l~------------~P~glaiD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~l~~~~~~~------------  220 (573)
                      ..+  .....            ....|++.+.+..|..+..  +.|...++.  +.....+.....+.            
T Consensus       267 ~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i  342 (447)
T 3dw8_B          267 KLF--EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI  342 (447)
T ss_dssp             EEE--CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred             eEe--ccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence            233  12211            4578999986666666554  888888875  33333332211000            


Q ss_pred             -eeEEEeee-CCeEEEecCCCCceEEEeccCCcce
Q psy952          221 -HVFALTLF-EDHIYWTDWNTKSINRADKFNGRDY  253 (573)
Q Consensus       221 -~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~  253 (573)
                       ..+.+++. ++.++++-...+.|...+..+++..
T Consensus       343 ~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          343 FDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             GCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             ccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence             02235553 3334455556677777776666544

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.22  E-value=0.08  Score=52.27  Aligned_cols=222  Identities=9%  Similarity=0.010  Sum_probs=121.3

Q ss_pred             EEEEEe-cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE---cCCCCCcce
Q psy952           18 WLIFSN-KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI---RHDSHGLEG   92 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~---~~~~~~p~g   92 (573)
                      +|+.+. ...|+.+++...... .+......+.+|+|.+.++.++++-...+.|+.+++........+   ......+..
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~  166 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLS  166 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEE
T ss_pred             EEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeE
Confidence            455444 457888888755433 333344568899999855666666666788999998765444344   233467888


Q ss_pred             eEEeecCCcEEEEeCCCCeEEEEEcCCCceeE-ec----------------------------cCCCCcceEEEeCCCce
Q psy952           93 LAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT-LK----------------------------TAIQDPRGITLHPGIGY  143 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~~I~~~~ldg~~~~~-l~----------------------------~~~~~P~~Iavdp~~g~  143 (573)
                      |++.+.++.|+.+. ..+.|.+.++....... +.                            ........|+++  ..+
T Consensus       167 ~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  243 (366)
T 3k26_A          167 ADYDLLGEKIMSCG-MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL  243 (366)
T ss_dssp             EEECTTSSEEEEEE-TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred             EEECCCCCEEEEec-CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence            99987655555544 56789998887532211 10                            022346677777  234


Q ss_pred             EEEEecCCcCeEEEEeccCCCc------------EEEEecCCCCCCCceEEEecc--CCeEEEEeCCCCeEEEEeCCCCc
Q psy952          144 VYFSSWNLQAYIGKIGMDGSNF------------TRILTHEDDIAWPNALTLDYF--TERLYWADAHLDYIASVDLDGKH  209 (573)
Q Consensus       144 LYwtd~~~~~~I~r~~ldG~~~------------~~l~~~~~~l~~P~glaiD~~--~~~LYw~D~~~~~I~~~~~dG~~  209 (573)
                      |+...  ....|...++.....            ..+......-.....|++.+.  +..|+. -...+.|...++....
T Consensus       244 l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~-~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          244 ILSKS--CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL-GNQVGKLYVWDLEVED  320 (366)
T ss_dssp             EEEEC--SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE-ECTTSCEEEEECCSSS
T ss_pred             EEEEe--cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE-EecCCcEEEEECCCCC
Confidence            43333  345566655543221            111110122233567777765  444444 4567788888887643


Q ss_pred             E----EEEEeCCc-cceeEEEeee-CCeEEEecCCCCceEEE
Q psy952          210 K----HIVISGQK-VPHVFALTLF-EDHIYWTDWNTKSINRA  245 (573)
Q Consensus       210 ~----~~l~~~~~-~~~p~~ia~~-~~~lywtd~~~~~I~~~  245 (573)
                      .    ........ ......|++. ++.++++-...+.|..-
T Consensus       321 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw  362 (366)
T 3k26_A          321 PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRW  362 (366)
T ss_dssp             GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEE
Confidence            1    11122210 2345667764 33344443344455433

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.22  E-value=0.11  Score=50.55  Aligned_cols=203  Identities=8%  Similarity=-0.034  Sum_probs=109.8

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc--e--EEEcCCCCCcceeEEeec-CCcEEEEeCCCCeEEEEEcC
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK--E--RVIRHDSHGLEGLAVDWV-GRKLYWLDRHSKQLDVAELD  118 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~--~i~~~~~~~p~glavD~~-~~~LY~td~~~~~I~~~~ld  118 (573)
                      ...+..|+|++.+..|+.+ ...+.|..+++.....  +  ..+......+..|++.+. .+.++++-...+.|.+.++.
T Consensus        11 ~~~v~~~~~~~~~~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~   89 (351)
T 3f3f_A           11 DDLVHDVVYDFYGRHVATC-SSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED   89 (351)
T ss_dssp             SSCEEEEEECSSSSEEEEE-ETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred             ccceeEEEEcCCCCEEEEe-eCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence            3458899999866655544 4567888888875321  1  112223356788888764 25555665567889998887


Q ss_pred             CCc----------eeEeccCCCCcceEEEeCC--CceEEEEecCCcCeEEEEeccCCC-cEEE-----Ee-----cCCCC
Q psy952          119 GTN----------RKTLKTAIQDPRGITLHPG--IGYVYFSSWNLQAYIGKIGMDGSN-FTRI-----LT-----HEDDI  175 (573)
Q Consensus       119 g~~----------~~~l~~~~~~P~~Iavdp~--~g~LYwtd~~~~~~I~r~~ldG~~-~~~l-----~~-----~~~~l  175 (573)
                      ...          ...+.........|+++|.  ..+|+.+.  ....|...++.... ...+     +.     .....
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (351)
T 3f3f_A           90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG--NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL  167 (351)
T ss_dssp             TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred             CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec--CCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence            542          2223334456889999996  44555544  34566666654322 1110     00     00122


Q ss_pred             CCCceEEEecc---CCeEEEEeCCCCeEEEEeCCCCcEEEEEe-CCccceeEEEeeeCC-----eEEEecCCCCceEEEe
Q psy952          176 AWPNALTLDYF---TERLYWADAHLDYIASVDLDGKHKHIVIS-GQKVPHVFALTLFED-----HIYWTDWNTKSINRAD  246 (573)
Q Consensus       176 ~~P~glaiD~~---~~~LYw~D~~~~~I~~~~~dG~~~~~l~~-~~~~~~p~~ia~~~~-----~lywtd~~~~~I~~~~  246 (573)
                      .....+++.+.   ...|..+. ..+.|............+.. ........+|++..+     .++++-...+.|...+
T Consensus       168 ~~~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd  246 (351)
T 3f3f_A          168 QSDFCLSWCPSRFSPEKLAVSA-LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK  246 (351)
T ss_dssp             CCCEEEEECCCSSSCCEEEEEE-TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred             cceeEEEeccCCCCCcEEEEec-CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence            33456777765   44454444 34444333333333322322 111234567777543     5666665666666665


Q ss_pred             ccCC
Q psy952          247 KFNG  250 (573)
Q Consensus       247 ~~~g  250 (573)
                      ...+
T Consensus       247 ~~~~  250 (351)
T 3f3f_A          247 ITEK  250 (351)
T ss_dssp             EEEC
T ss_pred             CCCC
Confidence            4443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.21  E-value=0.0072  Score=66.99  Aligned_cols=218  Identities=7%  Similarity=0.008  Sum_probs=123.7

Q ss_pred             ccEEEEEcCCCce---eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC--------------
Q psy952           25 YYVRNMSLDATQY---SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS--------------   87 (573)
Q Consensus        25 ~~I~~i~l~g~~~---~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~--------------   87 (573)
                      ..|+.+++++...   ..+.   ..+..++|.+.++.|.++.  .+.|+.+++.++....+...+.              
T Consensus        90 ~~i~~~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~--~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~  164 (719)
T 1z68_A           90 ATYYIYDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY--QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYE  164 (719)
T ss_dssp             EEEEEEETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHH
T ss_pred             eEEEEEECCCCccccceecC---cccccceECCCCCEEEEEE--CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceee
Confidence            6788899987654   2221   3466788999888888874  4589998887665443332221              


Q ss_pred             ----CCcceeEEeecCCcEEEEeCCC---------------------------------CeEEEEEcCCCcee---Eec-
Q psy952           88 ----HGLEGLAVDWVGRKLYWLDRHS---------------------------------KQLDVAELDGTNRK---TLK-  126 (573)
Q Consensus        88 ----~~p~glavD~~~~~LY~td~~~---------------------------------~~I~~~~ldg~~~~---~l~-  126 (573)
                          ....++++.+.++.|+++....                                 ..|.+.++++....   .+. 
T Consensus       165 ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~  244 (719)
T 1z68_A          165 EEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPV  244 (719)
T ss_dssp             HHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCC
T ss_pred             eecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccC
Confidence                1224788888888887754211                                 15677777765431   221 


Q ss_pred             -----cCCCCcceEEEeCCCceEEEE--ecC-CcCeEEEEe----ccCCCcEEEE----ecCCC-CC--CCceEEEeccC
Q psy952          127 -----TAIQDPRGITLHPGIGYVYFS--SWN-LQAYIGKIG----MDGSNFTRIL----THEDD-IA--WPNALTLDYFT  187 (573)
Q Consensus       127 -----~~~~~P~~Iavdp~~g~LYwt--d~~-~~~~I~r~~----ldG~~~~~l~----~~~~~-l~--~P~glaiD~~~  187 (573)
                           ........+++.|. +.++++  +.. ....|+..+    +++...+.+.    ..... +.  .+..+++.+++
T Consensus       245 ~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          245 PAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             CHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence                 12223578899997 555554  211 124687777    5433222221    00111 11  11267888878


Q ss_pred             CeEEEE-eC--CCCeEEEEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEecCC------CCceEEEeccCC
Q psy952          188 ERLYWA-DA--HLDYIASVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTDWN------TKSINRADKFNG  250 (573)
Q Consensus       188 ~~LYw~-D~--~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd~~------~~~I~~~~~~~g  250 (573)
                      .+||+. ..  +...|+.+++++...+.+..+. . ...++.. .++.||++...      ...|++++..+|
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~-~-~v~~~~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g  394 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVENAIQITSGK-W-EAINIFRVTQDSLFYSSNEFEEYPGRRNIYRISIGSY  394 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTTCEECSCSS-S-CEEEEEEECSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred             CeEEEEEEccCCceEEEEEECCCCceEecccCc-e-EEEEEEEEeCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence            877763 32  3347899998887655544332 1 1222222 56778887543      345777764444

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.20  E-value=0.19  Score=48.99  Aligned_cols=237  Identities=10%  Similarity=0.000  Sum_probs=127.5

Q ss_pred             CceeeCCCCCC-EEEEEe-cccEEEEEcCCCce--eec---cc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc
Q psy952            7 STCKRRDSIKP-WLIFSN-KYYVRNMSLDATQY--SLV---HQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE   78 (573)
Q Consensus         7 ~~C~~~~~~~~-~l~~s~-~~~I~~i~l~g~~~--~~~---~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~   78 (573)
                      .+|.+.....+ +|+-+. ...|+..++.....  ..+   +. ....+..++|.+.+..|+.. ...+.|+..+.....
T Consensus        41 V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~-~~d~~i~~~~~~~~~  119 (340)
T 4aow_A           41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG-SWDGTLRLWDLTTGT  119 (340)
T ss_dssp             EEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTTE
T ss_pred             EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE-cccccceEEeecccc
Confidence            45665442223 444333 46788888764321  111   12 23457899999866665554 455678888877654


Q ss_pred             ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec--cCCCCcceEEEeCCCceEEEEecCCcCeEE
Q psy952           79 KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIG  156 (573)
Q Consensus        79 ~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~  156 (573)
                      ...........+..+.+.+.++.|+ +-...+.|.+.++.+.....+.  ........+++.+.....++...+....|.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~l~-s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~  198 (340)
T 4aow_A          120 TTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK  198 (340)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSCEE-EEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEE
T ss_pred             eeeeecCCCCceeEEEEeecCccce-eecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEE
Confidence            4444433334555566655444444 4445667888887766554443  233446677777654443333223355676


Q ss_pred             EEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEec
Q psy952          157 KIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTD  236 (573)
Q Consensus       157 r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd  236 (573)
                      ..++.........  ...-.....|++.+.+..|+. -...+.|...++............  .....+++..+..+++-
T Consensus       199 i~d~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~  273 (340)
T 4aow_A          199 VWNLANCKLKTNH--IGHTGYLNTVTVSPDGSLCAS-GGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCA  273 (340)
T ss_dssp             EEETTTTEEEEEE--CCCSSCEEEEEECTTSSEEEE-EETTCEEEEEETTTTEEEEEEECS--SCEEEEEECSSSSEEEE
T ss_pred             EEECCCCceeeEe--cCCCCcEEEEEECCCCCEEEE-EeCCCeEEEEEeccCceeeeecCC--ceEEeeecCCCCceeec
Confidence            6666554433333  222334468899876555544 445678888888765543333332  23455555433333333


Q ss_pred             CCCCceEEEeccCC
Q psy952          237 WNTKSINRADKFNG  250 (573)
Q Consensus       237 ~~~~~I~~~~~~~g  250 (573)
                      ...+.|...+..++
T Consensus       274 ~~d~~i~iwd~~~~  287 (340)
T 4aow_A          274 ATGPSIKIWDLEGK  287 (340)
T ss_dssp             EETTEEEEEETTTT
T ss_pred             cCCCEEEEEECCCC
Confidence            33455655554333

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.20  E-value=0.26  Score=50.59  Aligned_cols=232  Identities=9%  Similarity=0.042  Sum_probs=131.1

Q ss_pred             ceeeCCCCCCEEEEE-ecccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952            8 TCKRRDSIKPWLIFS-NKYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s-~~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      +|....  ..+|+.+ ..+.|+..++...... .+......+..++++  .+ ++++-...+.|...++........+..
T Consensus       123 ~~~~~~--g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~-~l~s~~~dg~i~vwd~~~~~~~~~~~~  197 (445)
T 2ovr_B          123 TCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DN-IIISGSTDRTLKVWNAETGECIHTLYG  197 (445)
T ss_dssp             EEEEEE--TTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEEEc--CCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CC-EEEEEeCCCeEEEEECCcCcEEEEECC
Confidence            454433  2344443 3567888888754433 333334557788887  33 555555677899999876544333433


Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      ....+..++++  .+. +++-...+.|.+.++.... ...+.........++++  ..+|+...  ....|...++....
T Consensus       198 h~~~v~~~~~~--~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~--~dg~i~iwd~~~~~  270 (445)
T 2ovr_B          198 HTSTVRCMHLH--EKR-VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGA--YDFMVKVWDPETET  270 (445)
T ss_dssp             CSSCEEEEEEE--TTE-EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC--SSCEEEEE--TTSCEEEEEGGGTE
T ss_pred             CCCcEEEEEec--CCE-EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC--CCEEEEEc--CCCEEEEEECCCCc
Confidence            33456667765  444 4555567899999987543 33343444456677774  34555544  24567666665433


Q ss_pred             cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEE
Q psy952          165 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR  244 (573)
Q Consensus       165 ~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~  244 (573)
                      ....+  ...-.....+++  .+..|+.+ ...+.|...++..........+. .....++++.++.|+. -...+.|..
T Consensus       271 ~~~~~--~~~~~~v~~~~~--~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l~~-~~~dg~i~v  343 (445)
T 2ovr_B          271 CLHTL--QGHTNRVYSLQF--DGIHVVSG-SLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVS-GNADSTVKI  343 (445)
T ss_dssp             EEEEE--CCCSSCEEEEEE--CSSEEEEE-ETTSCEEEEETTTCCEEEEECCC-CSCEEEEEEETTEEEE-EETTSCEEE
T ss_pred             EeEEe--cCCCCceEEEEE--CCCEEEEE-eCCCeEEEEECCCCCEEEEEcCC-cccEEEEEEeCCEEEE-EeCCCeEEE
Confidence            22222  222222345555  35555444 45678888888654443333332 3445667766665444 445677887


Q ss_pred             EeccCCcceEEEcc
Q psy952          245 ADKFNGRDYRVLRN  258 (573)
Q Consensus       245 ~~~~~g~~~~~l~~  258 (573)
                      .+..+++....+..
T Consensus       344 wd~~~~~~~~~~~~  357 (445)
T 2ovr_B          344 WDIKTGQCLQTLQG  357 (445)
T ss_dssp             EETTTCCEEEEECS
T ss_pred             EECCCCcEEEEEcc
Confidence            77777766665543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=97.20  E-value=0.22  Score=49.66  Aligned_cols=180  Identities=13%  Similarity=0.016  Sum_probs=106.2

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeec-CCcEEEEeCCCCeEEEEEcCCCc-
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWV-GRKLYWLDRHSKQLDVAELDGTN-  121 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~-~~~LY~td~~~~~I~~~~ldg~~-  121 (573)
                      ...+.+++|.+....|+-+ ...+.|...++........+......+..+++.+. .++++++-...+.|.+.++.... 
T Consensus       154 ~~~v~~~~~~~~~~~l~t~-s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~  232 (354)
T 2pbi_B          154 TNYLSACSFTNSDMQILTA-SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC  232 (354)
T ss_dssp             SSCEEEEEECSSSSEEEEE-ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE
T ss_pred             CCcEEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            3457789998766666544 45678999998765443333333345666777654 34666666677899999986543 


Q ss_pred             eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952          122 RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA  201 (573)
Q Consensus       122 ~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~  201 (573)
                      ..++........+|+++|...+|+...  ....|...++.......+............+++.+.+..|+.+ ...+.|.
T Consensus       233 ~~~~~~h~~~v~~v~~~p~~~~l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g-~~d~~i~  309 (354)
T 2pbi_B          233 VQAFETHESDVNSVRYYPSGDAFASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAG-YNDYTIN  309 (354)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEE-ETTSCEE
T ss_pred             EEEecCCCCCeEEEEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEE-ECCCcEE
Confidence            333434455688999999655554443  3456776776554333333111122234678888665555544 4567788


Q ss_pred             EEeCCCCcEEEEEeCCccceeEEEeee
Q psy952          202 SVDLDGKHKHIVISGQKVPHVFALTLF  228 (573)
Q Consensus       202 ~~~~dG~~~~~l~~~~~~~~p~~ia~~  228 (573)
                      ..++........+.+. ......|++.
T Consensus       310 vwd~~~~~~~~~l~~h-~~~v~~l~~s  335 (354)
T 2pbi_B          310 VWDVLKGSRVSILFGH-ENRVSTLRVS  335 (354)
T ss_dssp             EEETTTCSEEEEECCC-SSCEEEEEEC
T ss_pred             EEECCCCceEEEEECC-CCcEEEEEEC
Confidence            8887543333333332 3345667763

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.19  E-value=0.14  Score=57.55  Aligned_cols=220  Identities=7%  Similarity=0.024  Sum_probs=129.7

Q ss_pred             CEEEEEe-cccEEEEEcCCCceeeccc---------CCcceEEEEEEcCCCE-EEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952           17 PWLIFSN-KYYVRNMSLDATQYSLVHQ---------DLLNVVAMDFHYKENR-FYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~~~~~~---------~~~~~~~v~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      .-|.++. ...|.+++.....+.....         ....+.+|..|. .+. ||+.- ..+.|++++..+.....+...
T Consensus       368 g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt-~~~Gl~~~d~~~~~~~~~~~~  445 (795)
T 4a2l_A          368 KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGT-HAGGLSILHRNSGQVENFNQR  445 (795)
T ss_dssp             SCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEE-TTTEEEEEETTTCCEEEECTT
T ss_pred             CCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEe-CcCceeEEeCCCCcEEEeecC
Confidence            3344444 3478888876554433211         124578898885 556 66654 445689999876554433221


Q ss_pred             ----CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-----CC--CCcceEEEeCCCceEEEEecCCcCe
Q psy952           86 ----DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-----AI--QDPRGITLHPGIGYVYFSSWNLQAY  154 (573)
Q Consensus        86 ----~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-----~~--~~P~~Iavdp~~g~LYwtd~~~~~~  154 (573)
                          ....+..|+.|. .++||++-.  +.|.+++......+.+..     .+  ...+.|+.|+ .|.||+...   ..
T Consensus       446 ~~~l~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~---~G  518 (795)
T 4a2l_A          446 NSQLVNENVYAILPDG-EGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWIGGE---EG  518 (795)
T ss_dssp             TSCCSCSCEEEEEECS-SSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEEEES---SC
T ss_pred             CCCcCCCeeEEEEECC-CCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEEEeC---Cc
Confidence                123577888885 567887765  458888877654443331     12  3467888987 678887763   45


Q ss_pred             EEEEeccCCCcEEEEe--cCCCC--CCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCcc--ceeEEEeee
Q psy952          155 IGKIGMDGSNFTRILT--HEDDI--AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKV--PHVFALTLF  228 (573)
Q Consensus       155 I~r~~ldG~~~~~l~~--~~~~l--~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~--~~p~~ia~~  228 (573)
                      |.+.+.+.... .+..  ....+  ....+|+.| .+++||++..+  .|.+++......+.+.....+  ....+|+.+
T Consensus       519 l~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d-~~g~lWigT~~--Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d  594 (795)
T 4a2l_A          519 LSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEA-SNGIIWVGTRE--GFYCFNEKDKQIKRYNTTNGLPNNVVYGILED  594 (795)
T ss_dssp             EEEEEEETTEE-EECCCSCSCGGGGSCEEEEEEC-TTSCEEEEESS--CEEEEETTTTEEEEECGGGTCSCSCEEEEEEC
T ss_pred             eEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEEC-CCCCEEEEeCC--CceeECCCCCcEEEeCCCCCCchhheEEEEEC
Confidence            88877765433 2210  01112  123567777 46788887654  688888876554443321112  235677776


Q ss_pred             -CCeEEEecCCCCceEEEeccCCc
Q psy952          229 -EDHIYWTDWNTKSINRADKFNGR  251 (573)
Q Consensus       229 -~~~lywtd~~~~~I~~~~~~~g~  251 (573)
                       ++.||++-  .+.|.++++.+++
T Consensus       595 ~~g~lWi~t--~~Gl~~~~~~~~~  616 (795)
T 4a2l_A          595 SFGRLWLST--NRGISCFNPETEK  616 (795)
T ss_dssp             TTSCEEEEE--TTEEEEEETTTTE
T ss_pred             CCCCEEEEc--CCceEEEcCCCCc
Confidence             46777765  3678888765543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=97.19  E-value=0.21  Score=49.36  Aligned_cols=234  Identities=9%  Similarity=0.010  Sum_probs=134.0

Q ss_pred             CEEEEEe-cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc--e--EEEcCCCCCc
Q psy952           17 PWLIFSN-KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK--E--RVIRHDSHGL   90 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~--~i~~~~~~~p   90 (573)
                      .+|+-+. ...|+..++..... ..+......+..++|.+..+.|.... ..+.|..+++.....  .  ..+......+
T Consensus        68 ~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v  146 (340)
T 1got_B           68 RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG-LDNICSIYNLKTREGNVRVSRELAGHTGYL  146 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEE-TTCEEEEEETTTCSBSCEEEEEEECCSSCE
T ss_pred             CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEe-CCCeEEEEECccCCCcceeEEEecCCCccE
Confidence            3444433 46788888765433 22223344578999998766655544 567888888765321  1  1122223455


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL  169 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~  169 (573)
                      ..+++.. .+. +++-...+.|.+.++..... .++.........|++.|... ++++-. ....|...++........+
T Consensus       147 ~~~~~~~-~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~-~d~~v~~wd~~~~~~~~~~  222 (340)
T 1got_B          147 SCCRFLD-DNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGA-CDASAKLWDVREGMCRQTF  222 (340)
T ss_dssp             EEEEEEE-TTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE-TTSCEEEEETTTCSEEEEE
T ss_pred             EEEEECC-CCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEe-CCCcEEEEECCCCeeEEEE
Confidence            6666653 334 44555677899988865443 33434455678999999544 444432 3556777776544433333


Q ss_pred             ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-CccceeEEEeee-CCeEEEecCCCCceEEEec
Q psy952          170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLF-EDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       170 ~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~  247 (573)
                        ...-.....|++.+.+..|. +-...+.|...++........... ........|++. .+.++.+-...+.|...+.
T Consensus       223 --~~h~~~v~~v~~~p~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~  299 (340)
T 1got_B          223 --TGHESDINAICFFPNGNAFA-TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA  299 (340)
T ss_dssp             --CCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             --cCCcCCEEEEEEcCCCCEEE-EEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEc
Confidence              23334457899987655544 445667888888875443333321 112235667763 4556666556677777776


Q ss_pred             cCCcceEEEcc
Q psy952          248 FNGRDYRVLRN  258 (573)
Q Consensus       248 ~~g~~~~~l~~  258 (573)
                      .++....++..
T Consensus       300 ~~~~~~~~~~~  310 (340)
T 1got_B          300 LKADRAGVLAG  310 (340)
T ss_dssp             TTCCEEEEEEC
T ss_pred             ccCcEeeEeec
Confidence            66665555543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.17  E-value=0.1  Score=58.35  Aligned_cols=216  Identities=9%  Similarity=0.060  Sum_probs=130.0

Q ss_pred             CEEEEEe-cccEEEEEcCCCceeeccc---CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-----C
Q psy952           17 PWLIFSN-KYYVRNMSLDATQYSLVHQ---DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-----S   87 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~~~~~~---~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-----~   87 (573)
                      .-|.++. ...|.+++.....++....   ....+.+|..|. .+.||++..  +.|++++..+...+.+....     .
T Consensus       418 g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~  494 (781)
T 3v9f_A          418 GNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLE  494 (781)
T ss_dssp             SCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSC
T ss_pred             CCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEEC--CceEEEeCCCCeEEecccCccccccc
Confidence            3444454 3677777776554443321   234577888884 678888765  56999998765554443221     2


Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec--cCC--CCcceEEEeCCCceEEEEecCCcCeE-EEEeccC
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--TAI--QDPRGITLHPGIGYVYFSSWNLQAYI-GKIGMDG  162 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~--~~P~~Iavdp~~g~LYwtd~~~~~~I-~r~~ldG  162 (573)
                      ..+.+|+.|. .++|+++-... .|.+++.++...+.+.  .++  ....+|+.|+ .|.||++..   ..| .+.+...
T Consensus       495 ~~i~~i~~d~-~g~lWigt~~~-Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~T~---~Glv~~~d~~~  568 (781)
T 3v9f_A          495 NFVRSIAQDS-EGRFWIGTFGG-GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSS-KGQMWLATG---EGLVCFPSARN  568 (781)
T ss_dssp             SCEEEEEECT-TCCEEEEESSS-CEEEECTTCCEEEEECTTTTCSCSCEEEEEECT-TSCEEEEET---TEEEEESCTTT
T ss_pred             ceeEEEEEcC-CCCEEEEEcCC-CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECC-CCCEEEEEC---CCceEEECCCC
Confidence            4677888885 66787776433 4888888766555443  233  2367888887 678887762   345 7777665


Q ss_pred             CCcEEEEecCCCCC--CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccc----eeEEEeee-CCeEEEe
Q psy952          163 SNFTRILTHEDDIA--WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVP----HVFALTLF-EDHIYWT  235 (573)
Q Consensus       163 ~~~~~l~~~~~~l~--~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~----~p~~ia~~-~~~lywt  235 (573)
                      ...+.+.. ...|.  ...+|+.| .+++||++.  .+.|.+++++....+.+.....++    .+.++... ++.||+.
T Consensus       569 ~~~~~~~~-~~gl~~~~i~~i~~d-~~g~lW~~t--~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g  644 (781)
T 3v9f_A          569 FDYQVFQR-KEGLPNTHIRAISED-KNGNIWAST--NTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFG  644 (781)
T ss_dssp             CCCEEECG-GGTCSCCCCCEEEEC-SSSCEEEEC--SSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEEE
T ss_pred             CcEEEccc-cCCCCCceEEEEEEC-CCCCEEEEc--CCceEEEECCCCceEEecccCCccccccccCceEECCCCEEEEE
Confidence            54444331 22232  24688888 578888875  345888998866555543211122    23355554 5778887


Q ss_pred             cCCCCceEEEec
Q psy952          236 DWNTKSINRADK  247 (573)
Q Consensus       236 d~~~~~I~~~~~  247 (573)
                      -.  +.+.++++
T Consensus       645 ~~--~Gl~~f~p  654 (781)
T 3v9f_A          645 SI--NGLCFFNP  654 (781)
T ss_dssp             ET--TEEEEECS
T ss_pred             CC--CceEEECh
Confidence            53  34666664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.15  E-value=0.04  Score=60.91  Aligned_cols=184  Identities=15%  Similarity=0.168  Sum_probs=111.9

Q ss_pred             cEEEEEcCCCce--eecccCCc----ceEEEEEEcCCCEEEEEECC---CCeEEEEEcCCC--cceEEEcCCCCCcceeE
Q psy952           26 YVRNMSLDATQY--SLVHQDLL----NVVAMDFHYKENRFYFADVA---AKTIYRSRVGST--EKERVIRHDSHGLEGLA   94 (573)
Q Consensus        26 ~I~~i~l~g~~~--~~~~~~~~----~~~~v~~d~~~~~ly~~d~~---~~~I~~~~~~g~--~~~~i~~~~~~~p~gla   94 (573)
                      .|++..+.....  .++.....    ...++.+.+.++.|+++...   ...|+.+++++.  ....+.. ........ 
T Consensus       209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~~~~~~~~-  286 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-DLDADVSL-  286 (693)
T ss_dssp             EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-SSSSCEEE-
T ss_pred             EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-CCCceEEE-
Confidence            478877764332  33333222    35688899988888876542   358999998765  3344433 32222222 


Q ss_pred             EeecCCcEEEEeCC---CCeEEEEEcCCCce---eEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEE
Q psy952           95 VDWVGRKLYWLDRH---SKQLDVAELDGTNR---KTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTR  167 (573)
Q Consensus        95 vD~~~~~LY~td~~---~~~I~~~~ldg~~~---~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~  167 (573)
                      +++.++.||+.-..   +.+|.++++++...   +.|+..-....  .+++..++|+++... ...+|++.+++|...+.
T Consensus       287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~  364 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVRE  364 (693)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEE
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEE
Confidence            56678888886432   47899999987543   45554322222  566667778777532 24579999999876554


Q ss_pred             EEecCCCCCCCceEEEeccCCeEEEEeCC---CCeEEEEeCCCCcEEEEEe
Q psy952          168 ILTHEDDIAWPNALTLDYFTERLYWADAH---LDYIASVDLDGKHKHIVIS  215 (573)
Q Consensus       168 l~~~~~~l~~P~glaiD~~~~~LYw~D~~---~~~I~~~~~dG~~~~~l~~  215 (573)
                      +.  ......-.+++.++.+++|+++-..   -..|+.+++.+...+++..
T Consensus       365 l~--~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~~  413 (693)
T 3iuj_A          365 VA--LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYRA  413 (693)
T ss_dssp             EC--CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEEC
T ss_pred             ee--cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEEe
Confidence            43  2222222355556667788776432   3689999998777766654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=97.15  E-value=0.19  Score=49.30  Aligned_cols=205  Identities=10%  Similarity=0.076  Sum_probs=122.6

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-----EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-----RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG  119 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-----~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg  119 (573)
                      ..+..|+|.+....++++-...+.|+..++.+....     ..+......+..+++.+.++.| ++-...+.|.+.++..
T Consensus        18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l-~s~s~D~~v~~wd~~~   96 (319)
T 3frx_A           18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYA-LSASWDKTLRLWDVAT   96 (319)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTT
T ss_pred             ceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEE-EEEeCCCEEEEEECCC
Confidence            447788998777677777777788887777543211     1122233567788888655444 4545678899999864


Q ss_pred             Cc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEecc-----CCeEEEE
Q psy952          120 TN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF-----TERLYWA  193 (573)
Q Consensus       120 ~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~-----~~~LYw~  193 (573)
                      .. ...+.........|+++|...+|+-..  ....|..-++.+.....+.   ..-.....+++.+.     ++.++++
T Consensus        97 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~D~~i~vwd~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~l~s  171 (319)
T 3frx_A           97 GETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWTIKGQCLATLL---GHNDWVSQVRVVPNEKADDDSVTIIS  171 (319)
T ss_dssp             TEEEEEEECCSSCEEEEEECTTSCEEEEEE--TTSCEEEEETTSCEEEEEC---CCSSCEEEEEECCC------CCEEEE
T ss_pred             CCeeEEEccCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCeEEEEe---ccCCcEEEEEEccCCCCCCCccEEEE
Confidence            43 344445555688999999655554443  3456777777765444433   22233455666543     2335555


Q ss_pred             eCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          194 DAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       194 D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      -...+.|...++........+.+. ......|++. ++.++.+-...+.|..-+..+++....+
T Consensus       172 ~~~d~~i~~wd~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~  234 (319)
T 3frx_A          172 AGNDKMVKAWNLNQFQIEADFIGH-NSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL  234 (319)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCC-CSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             EeCCCEEEEEECCcchhheeecCC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe
Confidence            556677888887655443333332 3345677774 4556666556677777776666554444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.12  E-value=0.19  Score=49.36  Aligned_cols=117  Identities=11%  Similarity=0.049  Sum_probs=77.8

Q ss_pred             CCcceEEEEEEcCC--CEEEEEECCCCeEEEEEcCC-C-cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC
Q psy952           43 DLLNVVAMDFHYKE--NRFYFADVAAKTIYRSRVGS-T-EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD  118 (573)
Q Consensus        43 ~~~~~~~v~~d~~~--~~ly~~d~~~~~I~~~~~~g-~-~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld  118 (573)
                      ....+..|+|.+..  +.++++-...+.|+.+++.. . .....+......+..|++.+.++.|+.+ ...+.|.+.++.
T Consensus        38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~dg~v~iwd~~  116 (368)
T 3mmy_A           38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTA-SCDKTAKMWDLS  116 (368)
T ss_dssp             CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEE-ETTSEEEEEETT
T ss_pred             CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEE-cCCCcEEEEEcC
Confidence            34568899999876  67677766778888888875 2 2212333334678889998755555544 456789999998


Q ss_pred             CCceeEeccCCCCcceEEE--eCCCceEEEEecCCcCeEEEEeccC
Q psy952          119 GTNRKTLKTAIQDPRGITL--HPGIGYVYFSSWNLQAYIGKIGMDG  162 (573)
Q Consensus       119 g~~~~~l~~~~~~P~~Iav--dp~~g~LYwtd~~~~~~I~r~~ldG  162 (573)
                      ......+.........|++  ++...+|+.+.  ....|...++..
T Consensus       117 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~  160 (368)
T 3mmy_A          117 SNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGS--WDKTLKFWDTRS  160 (368)
T ss_dssp             TTEEEEEEECSSCEEEEEEEECSSCEEEEEEE--TTSEEEEECSSC
T ss_pred             CCCceeeccccCceEEEEEEeCCCCCEEEEcc--CCCcEEEEECCC
Confidence            7766555555566788988  77444444443  345677766653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=97.11  E-value=0.027  Score=56.49  Aligned_cols=232  Identities=13%  Similarity=0.003  Sum_probs=121.7

Q ss_pred             CCceeeCCCCCCEEEEE-ecccEEEEEcCCCc--ee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc---
Q psy952            6 ESTCKRRDSIKPWLIFS-NKYYVRNMSLDATQ--YS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE---   78 (573)
Q Consensus         6 g~~C~~~~~~~~~l~~s-~~~~I~~i~l~g~~--~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~---   78 (573)
                      ..+|.+......+|+.+ ....|+..++.+..  .. .+......+..|+|.+.++.|+.+. ..+.|+.+++....   
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~v~vwd~~~~~~~~   91 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS-QDRNAYVYEKRPDGTWK   91 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE-TTSSEEEC------CCC
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe-CCCeEEEEEcCCCCcee
Confidence            34555544333456555 35677777776552  22 2222344588999998766665554 55678888876544   


Q ss_pred             ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc----eeEecc-CCCCcceEEEeCCCceEEEEecCCcC
Q psy952           79 KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN----RKTLKT-AIQDPRGITLHPGIGYVYFSSWNLQA  153 (573)
Q Consensus        79 ~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~----~~~l~~-~~~~P~~Iavdp~~g~LYwtd~~~~~  153 (573)
                      ....+......+..|++.+.++.|+.+. ..+.|.+.+++...    .+.+.. .......|+++|...+|+....  ..
T Consensus        92 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~--d~  168 (377)
T 3dwl_C           92 QTLVLLRLNRAATFVRWSPNEDKFAVGS-GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCA--DR  168 (377)
T ss_dssp             CEEECCCCSSCEEEEECCTTSSCCEEEE-SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEES--SS
T ss_pred             eeeEecccCCceEEEEECCCCCEEEEEe-cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeC--CC
Confidence            2222222335678888887666666554 46788888887654    334443 4556889999996655655542  34


Q ss_pred             eEEEEeccCC----------------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE-----EE
Q psy952          154 YIGKIGMDGS----------------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK-----HI  212 (573)
Q Consensus       154 ~I~r~~ldG~----------------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~-----~~  212 (573)
                      .|...++...                ..+.+.. ...-.....+++.+.+..|+.+. ..+.|...++.....     ..
T Consensus       169 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~  246 (377)
T 3dwl_C          169 KAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAE-YPSGGWVHAVGFSPSGNALAYAG-HDSSVTIAYPSAPEQPPRALIT  246 (377)
T ss_dssp             CEEEEEECCSSCC-CCCSCSSCSCCCEEEEEEC-CCCSSSEEEEEECTTSSCEEEEE-TTTEEC-CEECSTTSCEEECCC
T ss_pred             EEEEEEEEecccCCCccccccccccchhhhhhc-ccCCceEEEEEECCCCCEEEEEe-CCCcEEEEECCCCCCcceeeEe
Confidence            5555554311                1122221 11222346888987766666654 456777777665433     22


Q ss_pred             EEeCCccceeEEEeee-CCeEEEecCCCCceEEEe
Q psy952          213 VISGQKVPHVFALTLF-EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       213 l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~  246 (573)
                      +. .. .....+|++. ++.++.+-.. +.+...+
T Consensus       247 ~~-~~-~~~v~~~~~s~~~~~l~~~~~-~~~~~~~  278 (377)
T 3dwl_C          247 VK-LS-QLPLRSLLWANESAIVAAGYN-YSPILLQ  278 (377)
T ss_dssp             EE-CS-SSCEEEEEEEETTEEEEEESS-SSEEEEC
T ss_pred             ec-CC-CCceEEEEEcCCCCEEEEEcC-CcEEEEE
Confidence            22 21 2345677763 4444444433 3333443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.10  E-value=0.31  Score=49.70  Aligned_cols=233  Identities=9%  Similarity=-0.005  Sum_probs=132.6

Q ss_pred             CCEEEEEecccEEEEEcCCCceeeccc---CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcce
Q psy952           16 KPWLIFSNKYYVRNMSLDATQYSLVHQ---DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEG   92 (573)
Q Consensus        16 ~~~l~~s~~~~I~~i~l~g~~~~~~~~---~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~g   92 (573)
                      ...|.++..+.|+..++...+...+..   ....+.+|+|.+.++.|. +-...+.|...++........+......+..
T Consensus       116 ~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~la-sgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~  194 (420)
T 4gga_A          116 GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA-VGTSSAEVQLWDVQQQKRLRNMTSHSARVGS  194 (420)
T ss_dssp             TSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             CCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEE-EEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence            457777778889999987655433322   234588999998665555 4456678988998765433333322234444


Q ss_pred             eEEeecCCcEEEEeCCCCeEEEEEcCCCce--eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc----E
Q psy952           93 LAVDWVGRKLYWLDRHSKQLDVAELDGTNR--KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF----T  166 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~~I~~~~ldg~~~--~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~----~  166 (573)
                      +  .|.. .+..+-...+.|...+......  .++........+++..|...+|....  ....|...++.....    .
T Consensus       195 ~--s~~~-~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~--~D~~v~i~~~~~~~~~~~~~  269 (420)
T 4gga_A          195 L--SWNS-YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG--NDNLVNVWPSAPGEGGWVPL  269 (420)
T ss_dssp             E--EEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEESSCCSSCSCCS
T ss_pred             E--eeCC-CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeee--ccccceEEeeccccccceee
Confidence            4  4433 4555555667888877664433  23334555678888888655554443  234455444432211    1


Q ss_pred             EEEecCCCCCCCceEEEeccCCeEEEEe--CCCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEec-CCCCc
Q psy952          167 RILTHEDDIAWPNALTLDYFTERLYWAD--AHLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTD-WNTKS  241 (573)
Q Consensus       167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D--~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd-~~~~~  241 (573)
                      ...  .........+++.+....++.+-  ...+.|...++........+..  ......+.+  .++.|+.+- ...+.
T Consensus       270 ~~~--~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~  345 (420)
T 4gga_A          270 QTF--TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQ  345 (420)
T ss_dssp             EEE--CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred             eee--cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc--ccceeeeeecCCCCeEEEEEecCCCE
Confidence            111  12223345778877776666543  2356787778765544333332  234555555  345565553 34567


Q ss_pred             eEEEeccCCcceEEEcc
Q psy952          242 INRADKFNGRDYRVLRN  258 (573)
Q Consensus       242 I~~~~~~~g~~~~~l~~  258 (573)
                      |...+..+++.+..+..
T Consensus       346 I~iwd~~~~~~v~~l~g  362 (420)
T 4gga_A          346 LVIWKYPTMAKVAELKG  362 (420)
T ss_dssp             EEEEETTTCCEEEEECC
T ss_pred             EEEEECCCCcEEEEEcC
Confidence            77777667776666544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.09  E-value=0.34  Score=49.88  Aligned_cols=225  Identities=12%  Similarity=0.053  Sum_probs=125.4

Q ss_pred             EEEEEe-cccEEEEEcCCCceeecc-cCCcceEEEEEEc-CCCEEEEEECCCCeEEEEEcCCCcceE-------------
Q psy952           18 WLIFSN-KYYVRNMSLDATQYSLVH-QDLLNVVAMDFHY-KENRFYFADVAAKTIYRSRVGSTEKER-------------   81 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~~~~~~-~~~~~~~~v~~d~-~~~~ly~~d~~~~~I~~~~~~g~~~~~-------------   81 (573)
                      +|+.+. ...|+..++........+ .....+..|++.+ .++.++++-...+.|...++.......             
T Consensus       175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  254 (464)
T 3v7d_B          175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFH  254 (464)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEES
T ss_pred             EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEee
Confidence            444433 567888888755433333 3445577888885 345666666677788888876543211             


Q ss_pred             ----------EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEecC
Q psy952           82 ----------VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWN  150 (573)
Q Consensus        82 ----------i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~  150 (573)
                                .+......+.  ++.+.++.|+.+ ...+.|.+.++..... ..+.........++++|...+|+...  
T Consensus       255 ~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~~~-~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~--  329 (464)
T 3v7d_B          255 TPEENPYFVGVLRGHMASVR--TVSGHGNIVVSG-SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS--  329 (464)
T ss_dssp             CGGGCTTEEEEECCCSSCEE--EEEEETTEEEEE-ETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE--
T ss_pred             ccCCCeEEEEEccCccceEE--EEcCCCCEEEEE-eCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe--
Confidence                      1111112233  334444555444 4567899999865443 33334455688999999766666554  


Q ss_pred             CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCC
Q psy952          151 LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFED  230 (573)
Q Consensus       151 ~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~  230 (573)
                      ..+.|...++........+  ...-.....|+++  +.. .++-...+.|...++...................+...+.
T Consensus       330 ~dg~i~vwd~~~~~~~~~~--~~h~~~v~~~~~~--~~~-l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (464)
T 3v7d_B          330 MDTTIRIWDLENGELMYTL--QGHTALVGLLRLS--DKF-LVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDN  404 (464)
T ss_dssp             TTSCEEEEETTTTEEEEEE--CCCSSCEEEEEEC--SSE-EEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSS
T ss_pred             CCCcEEEEECCCCcEEEEE--eCCCCcEEEEEEc--CCE-EEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCC
Confidence            3566777777543332223  2333334566665  444 4444566788888887655544443221222223333344


Q ss_pred             eEEEecCCCCceEEEeccCCcceE
Q psy952          231 HIYWTDWNTKSINRADKFNGRDYR  254 (573)
Q Consensus       231 ~lywtd~~~~~I~~~~~~~g~~~~  254 (573)
                      .|....  .+.|...+..+|+...
T Consensus       405 ~l~~~~--dg~i~iwd~~~g~~~~  426 (464)
T 3v7d_B          405 ILVSGS--ENQFNIYNLRSGKLVH  426 (464)
T ss_dssp             EEEEEE--TTEEEEEETTTCCEEE
T ss_pred             EEEEec--CCeEEEEECCCCcEEe
Confidence            444433  5677777766766444

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=97.08  E-value=0.31  Score=49.30  Aligned_cols=218  Identities=9%  Similarity=0.085  Sum_probs=124.2

Q ss_pred             CEEEEEe-cccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           17 PWLIFSN-KYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      .+|+.+. ...|+..++........+. ....+.+|+|.+....|+ +-...+.|...++........+.. -..+..++
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-s~s~d~~v~iwd~~~~~~~~~~~~-~~~v~~~~  213 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV-SGSGDRTVRIWDLRTGQCSLTLSI-EDGVTTVA  213 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEETTSEEEEEETTTTEEEEEEEC-SSCEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEE-EecCCCcEEEEECCCCeeEEEEEc-CCCcEEEE
Confidence            4555443 4678888887665433333 344588999998776665 445667899999876544333332 24677788


Q ss_pred             EeecCCcEEEEeCCCCeEEEEEcCCCc-eeEec-------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC--
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLK-------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN--  164 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~-------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~--  164 (573)
                      +.+..++++++-...+.|.+.++.... ...+.       .......+|+++|...+|+-..  ....|...++....  
T Consensus       214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s--~d~~v~~wd~~~~~~~  291 (393)
T 1erj_A          214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS--LDRSVKLWNLQNANNK  291 (393)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEEC------
T ss_pred             EECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe--CCCEEEEEECCCCCCc
Confidence            887566777776677889998886543 23331       1233478899999666665444  24555555553211  


Q ss_pred             -----------cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC----
Q psy952          165 -----------FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE----  229 (573)
Q Consensus       165 -----------~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~----  229 (573)
                                 ...+.   ..-.....+++.+.+..|+ +-...+.|...++........+.+. .....++++..    
T Consensus       292 ~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~-sgs~D~~v~iwd~~~~~~~~~l~~h-~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          292 SDSKTPNSGTCEVTYI---GHKDFVLSVATTQNDEYIL-SGSKDRGVLFWDKKSGNPLLMLQGH-RNSVISVAVANGSSL  366 (393)
T ss_dssp             ---------CEEEEEE---CCSSCEEEEEECGGGCEEE-EEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECSSCTT
T ss_pred             ccccCCCCCcceEEEe---cccCcEEEEEECCCCCEEE-EEeCCCeEEEEECCCCeEEEEECCC-CCCEEEEEecCCcCc
Confidence                       11111   2222345677776555544 4445667777777654443333332 23455666542    


Q ss_pred             ---CeEEEecCCCCceE
Q psy952          230 ---DHIYWTDWNTKSIN  243 (573)
Q Consensus       230 ---~~lywtd~~~~~I~  243 (573)
                         +.+++|-...+.|.
T Consensus       367 ~p~~~~l~sgs~Dg~i~  383 (393)
T 1erj_A          367 GPEYNVFATGSGDCKAR  383 (393)
T ss_dssp             CTTCEEEEEEETTSEEE
T ss_pred             CCCCCEEEEECCCCcEE
Confidence               34555544444443

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.06  E-value=0.00023  Score=81.13  Aligned_cols=42  Identities=36%  Similarity=0.962  Sum_probs=36.2

Q ss_pred             CcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCCC--CCCCC
Q psy952          524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ--RTCPQ  569 (573)
Q Consensus       524 ~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~--~~c~~  569 (573)
                      .|. +.|+|.+| +||+..|+|||++||+|+|||.  +|..  ..|..
T Consensus       118 ~C~-~~F~C~~g-~ci~~~~~c~g~~dC~d~sde~--~C~~~~~~C~~  161 (913)
T 3t5o_A          118 DCK-NKFRCDSG-RCIARKLECNGENDCGDNSDER--DCGRTKAVCTR  161 (913)
T ss_dssp             CCS-SEEECTTS-CEEEGGGSSSSSCCSSSSGGGT--TCSSCCCSSSS
T ss_pred             Ccc-cccccCCC-ceEccceecCCcccCCCccccc--cCCCCCCcccc
Confidence            453 67999998 9999999999999999999998  8975  34754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.04  E-value=0.33  Score=53.36  Aligned_cols=76  Identities=9%  Similarity=-0.008  Sum_probs=47.6

Q ss_pred             ceEEEeccCCeEEEEeCC------------------------------------------CCeEEEEeCCCCcEE-EEEe
Q psy952          179 NALTLDYFTERLYWADAH------------------------------------------LDYIASVDLDGKHKH-IVIS  215 (573)
Q Consensus       179 ~glaiD~~~~~LYw~D~~------------------------------------------~~~I~~~~~dG~~~~-~l~~  215 (573)
                      .++++|+..+.||+....                                          .+.|..+|+...... .+..
T Consensus       396 ~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~  475 (677)
T 1kb0_A          396 HPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH  475 (677)
T ss_dssp             SCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC
Confidence            478999999999986321                                          156777777543332 2222


Q ss_pred             CCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          216 GQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       216 ~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      +. ...--.++..++.||+. ...+.|+.++..+|+.+..+
T Consensus       476 ~~-~~~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~  514 (677)
T 1kb0_A          476 VS-PWNGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEA  514 (677)
T ss_dssp             SS-SCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEE
T ss_pred             CC-CCcCcceEeCCCEEEEE-CCCCcEEEEECCCCceeeee
Confidence            21 01112244567788887 46788999998888876554

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=97.04  E-value=0.28  Score=49.40  Aligned_cols=198  Identities=8%  Similarity=0.053  Sum_probs=116.5

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-----CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC--
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-----DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD--  118 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-----~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld--  118 (573)
                      .+..+.|.+..+..+++-...+.|...++.......++..     ....+..+++....++++++-...+.|.+.++.  
T Consensus       159 ~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~  238 (380)
T 3iz6_a          159 YASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT  238 (380)
T ss_dssp             CCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT
T ss_pred             ceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC
Confidence            3556777776666666777778898888876544333321     123556677766677888888888899999986  


Q ss_pred             CCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecC-----CCCCCCceEEEeccCCeEEEE
Q psy952          119 GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE-----DDIAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       119 g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~-----~~l~~P~glaiD~~~~~LYw~  193 (573)
                      +....++.........|+++|.. .++++- +....|...++........+...     ..+.....+++.+.+..|+ +
T Consensus       239 ~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~-s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~  315 (380)
T 3iz6_a          239 SRAVRTYHGHEGDINSVKFFPDG-QRFGTG-SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLF-A  315 (380)
T ss_dssp             CCCCEEECCCSSCCCEEEECTTS-SEEEEE-CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE-E
T ss_pred             CcceEEECCcCCCeEEEEEecCC-CeEEEE-cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEE-E
Confidence            23344444555568899999954 444554 23566777777644333333101     1122346889987555554 4


Q ss_pred             eCCCCeEEEEeCCCCcEEEEEe---CCccceeEEEeee-CCeEEEecCCCCceEEEe
Q psy952          194 DAHLDYIASVDLDGKHKHIVIS---GQKVPHVFALTLF-EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       194 D~~~~~I~~~~~dG~~~~~l~~---~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~  246 (573)
                      -...+.|...+.........+.   .........|++. ++.+++|-...+.|..-+
T Consensus       316 g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~  372 (380)
T 3iz6_a          316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWA  372 (380)
T ss_dssp             ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred             EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEe
Confidence            5567788888876544332221   1112234566663 344555544555554433

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=97.03  E-value=0.15  Score=55.24  Aligned_cols=205  Identities=9%  Similarity=0.035  Sum_probs=121.0

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC-Cc-
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG-TN-  121 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg-~~-  121 (573)
                      -+.+..|+|++.++.|..+.  .+.|+..++.......++......+..+++.+.++.| .+-...+.|.+-++.. .. 
T Consensus        18 ~g~~~~~~~spdg~~l~~~~--~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l-asg~~d~~v~lWd~~~~~~~   94 (611)
T 1nr0_A           18 RGTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC-ASGDVHGNVRIWDTTQTTHI   94 (611)
T ss_dssp             TTCCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEESSSTTCC
T ss_pred             cCceeEEeeCCCCCEEEeCC--CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEE-EEEeCCCCEEEeECCCCcce
Confidence            34577889999888887765  3478888886544433444344678889999865544 4444567888888753 22 


Q ss_pred             -eeEeccCCCCcceEEEeCCCceEEEEecCCc--CeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952          122 -RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQ--AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD  198 (573)
Q Consensus       122 -~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~--~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~  198 (573)
                       ...+........+|+++|...+|..+.....  ..|...+. |.....+.   ..-...+.+++.+.+..++.+-...+
T Consensus        95 ~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~-~~~~~~l~---gh~~~v~~v~f~p~~~~~l~s~s~D~  170 (611)
T 1nr0_A           95 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT-GTSNGNLT---GQARAMNSVDFKPSRPFRIISGSDDN  170 (611)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT-CCBCBCCC---CCSSCEEEEEECSSSSCEEEEEETTS
T ss_pred             eeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC-CCCcceec---CCCCCceEEEECCCCCeEEEEEeCCC
Confidence             1222233345789999997777765543221  23433332 22222221   22234568888876665566666667


Q ss_pred             eEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          199 YIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       199 ~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      .|...+.........+.+. .....+|++. ++.++.+-...+.|..-+..+|+...++
T Consensus       171 ~v~lwd~~~~~~~~~l~~H-~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~  228 (611)
T 1nr0_A          171 TVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF  228 (611)
T ss_dssp             CEEEEETTTBEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             eEEEEECCCCeEeeeeccc-cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeee
Confidence            7777775543322223332 3456777774 4556666666677777776666655544

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.98  E-value=0.15  Score=56.77  Aligned_cols=195  Identities=7%  Similarity=-0.050  Sum_probs=115.7

Q ss_pred             ceEEEEEE-cCCCEEEEEECCCC----eEEEEEcCCC-cceEEEcCCCC-CcceeEEeecCCcEEEEeCCC----CeEEE
Q psy952           46 NVVAMDFH-YKENRFYFADVAAK----TIYRSRVGST-EKERVIRHDSH-GLEGLAVDWVGRKLYWLDRHS----KQLDV  114 (573)
Q Consensus        46 ~~~~v~~d-~~~~~ly~~d~~~~----~I~~~~~~g~-~~~~i~~~~~~-~p~glavD~~~~~LY~td~~~----~~I~~  114 (573)
                      ...++.+. +.+++|.|+....+    .|++++++++ ..   +...+. ...+++..+.++.||++....    .+|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~---l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT---IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC---CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe---CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            46678899 88887777654332    5999999876 42   111111 134566666677788875321    37899


Q ss_pred             EEcCCCce--eEecc--CCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCC--c--EEEEecCCCCCCCceEEEe-
Q psy952          115 AELDGTNR--KTLKT--AIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSN--F--TRILTHEDDIAWPNALTLD-  184 (573)
Q Consensus       115 ~~ldg~~~--~~l~~--~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~--~--~~l~~~~~~l~~P~glaiD-  184 (573)
                      .++.+...  +.+..  .-..-.++++.|...+|+|+.+. ....|+.+++++..  .  +.++   .....+ -..++ 
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~---~~~~~~-~~s~~~  327 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR---PREKGV-RYDVQM  327 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS---CCCTTC-CEEEEE
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee---cCCCCc-eEEEee
Confidence            99987542  23322  11223467899988889988754 35679999988652  2  3333   222222 12344 


Q ss_pred             ccCCeEEEEeC----CCCeEEEEeCCC-CcEEE-EEeCCccceeEEEeeeCCeEEEecCCC--CceEEEec
Q psy952          185 YFTERLYWADA----HLDYIASVDLDG-KHKHI-VISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADK  247 (573)
Q Consensus       185 ~~~~~LYw~D~----~~~~I~~~~~dG-~~~~~-l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~  247 (573)
                      ..+++|||...    ...+|+++++++ ...+. ++....-....++++++++||++-...  ..|++++.
T Consensus       328 ~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          328 HGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             ETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEEEEETTEEEEEEEEC
T ss_pred             eeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEEEEeCCEEEEEEEec
Confidence            34788887643    345899999884 33333 443221124466777888888775443  35666664

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=96.97  E-value=0.36  Score=48.56  Aligned_cols=243  Identities=8%  Similarity=-0.011  Sum_probs=137.4

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-------
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-------   78 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------   78 (573)
                      +|.+......+|+-+. ...|+..++...... .+......+..++|.+.++.|. +-...+.|..+++....       
T Consensus        70 ~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~la-s~~~d~~v~iw~~~~~~~~~~~~~  148 (380)
T 3iz6_a           70 YSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVA-CGGLDSACSIFNLSSQADRDGNMP  148 (380)
T ss_dssp             EEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEE-ECCSSSCCEEEECCCCSSCCCSST
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEE-EeeCCCcEEEEECCCCccccCCcc
Confidence            3444332233444443 467888887654332 2222334567889998665554 44445667667664321       


Q ss_pred             ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec------cCCCCcceEEEeCCCceEEEEecCCc
Q psy952           79 KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK------TAIQDPRGITLHPGIGYVYFSSWNLQ  152 (573)
Q Consensus        79 ~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~------~~~~~P~~Iavdp~~g~LYwtd~~~~  152 (573)
                      ...++......+..+++.+..+..+++-+..+.|.+.++........+      ........+++.+..+.++.+-. ..
T Consensus       149 ~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs-~D  227 (380)
T 3iz6_a          149 VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGS-CD  227 (380)
T ss_dssp             TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEE-TT
T ss_pred             ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEE-CC
Confidence            111122222345566666555666667777888999888654433322      12334678888887777777753 35


Q ss_pred             CeEEEEecc--CCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCc------cceeEE
Q psy952          153 AYIGKIGMD--GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK------VPHVFA  224 (573)
Q Consensus       153 ~~I~r~~ld--G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~------~~~p~~  224 (573)
                      ..|...++.  +.....+.   ..-...+.|++.+.+ .++++-...+.|...++.......+.....      .+...+
T Consensus       228 ~~v~~wd~~~~~~~~~~~~---~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~  303 (380)
T 3iz6_a          228 TTVRLWDLRITSRAVRTYH---GHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTS  303 (380)
T ss_dssp             SCEEEEETTTTCCCCEEEC---CCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSE
T ss_pred             CeEEEEECCCCCcceEEEC---CcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEE
Confidence            566666664  23333332   333446789998654 455566677888888887654433332210      112456


Q ss_pred             Eeee-CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          225 LTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       225 ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      +++. .+.++++-...+.|+.-+..+++....+
T Consensus       304 ~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          304 VAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             EEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence            6663 4556666666778887776666554444

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.97  E-value=0.14  Score=51.98  Aligned_cols=213  Identities=12%  Similarity=0.046  Sum_probs=117.1

Q ss_pred             CCEEEEEecccEEEEEcCC--Cceeec--ccCCcceEEEEEEcC-CCEEEEEECCC--C-eEEEEEcCCCcceEEEcC-C
Q psy952           16 KPWLIFSNKYYVRNMSLDA--TQYSLV--HQDLLNVVAMDFHYK-ENRFYFADVAA--K-TIYRSRVGSTEKERVIRH-D   86 (573)
Q Consensus        16 ~~~l~~s~~~~I~~i~l~g--~~~~~~--~~~~~~~~~v~~d~~-~~~ly~~d~~~--~-~I~~~~~~g~~~~~i~~~-~   86 (573)
                      ...|+++....+.++..++  ...+..  ......+.+|++|+. .+.||+.-...  + .|++..-.|...+.+... .
T Consensus        22 ~g~l~vgt~~Gl~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~  101 (394)
T 3b7f_A           22 PVMLLVATIKGAWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPA  101 (394)
T ss_dssp             CCEEEEEETTEEEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCC
T ss_pred             CCEEEEEecCceEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCcccc
Confidence            4467777766787777643  444432  123345889999984 56677764322  1 687765445444433211 1


Q ss_pred             C------------CCcceeEEeec--CCcEEEEeCCCCeEEEEEcCCCceeEeccC-------------------CCCcc
Q psy952           87 S------------HGLEGLAVDWV--GRKLYWLDRHSKQLDVAELDGTNRKTLKTA-------------------IQDPR  133 (573)
Q Consensus        87 ~------------~~p~glavD~~--~~~LY~td~~~~~I~~~~ldg~~~~~l~~~-------------------~~~P~  133 (573)
                      +            ..+.+|++|+.  .+.||+.-. .+.|++.+-.|..-+.+...                   .....
T Consensus       102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~  180 (394)
T 3b7f_A          102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH  180 (394)
T ss_dssp             CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE
T ss_pred             CCCcccccccccccceeEEEeCCCCCCCEEEEEec-CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee
Confidence            1            13456888864  577877542 45688776666554433210                   01235


Q ss_pred             eEEEeCC-CceEEEEecCCcCeEEEEeccCCCcEEEEecCCC--C--------CCCceEEEeccC-CeEEEEeCCCCeEE
Q psy952          134 GITLHPG-IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD--I--------AWPNALTLDYFT-ERLYWADAHLDYIA  201 (573)
Q Consensus       134 ~Iavdp~-~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~--l--------~~P~glaiD~~~-~~LYw~D~~~~~I~  201 (573)
                      .|++||. .+.||+...  ...|++..-.|..-+.+......  +        .....|++++.+ +.||+..  .+.|+
T Consensus       181 ~i~~d~~~~~~l~vg~~--~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~--~~gl~  256 (394)
T 3b7f_A          181 SILVDPRDPKHLYIGMS--SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN--HCGIY  256 (394)
T ss_dssp             EEEECTTCTTCEEEEEE--TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE--TTEEE
T ss_pred             EEEECCCCCCEEEEEEC--CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc--CCeEE
Confidence            8999984 467888752  24577776556554443200000  1        123578888753 6788764  34577


Q ss_pred             EEeCCCCcEEEEEeCCccc-----eeEEEeee---CCeEEEe
Q psy952          202 SVDLDGKHKHIVISGQKVP-----HVFALTLF---EDHIYWT  235 (573)
Q Consensus       202 ~~~~dG~~~~~l~~~~~~~-----~p~~ia~~---~~~lywt  235 (573)
                      +.+-.|..-+.+...  ++     ..+.|++.   .+.||+.
T Consensus       257 ~s~D~G~tW~~~~~~--l~~~~~~~~~~i~~~p~~~~~l~~~  296 (394)
T 3b7f_A          257 RMDRREGVWKRIGDA--MPREVGDIGFPIVVHQRDPRTVWVF  296 (394)
T ss_dssp             EEETTTTEEECGGGG--SCTTTCSCEEEEEECSSCTTCEEEE
T ss_pred             EeCCCCCcceECCCC--CCCCCccceEEEEECCCCCCEEEEE
Confidence            776555443333211  22     23556663   4667775

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.97  E-value=0.16  Score=55.81  Aligned_cols=243  Identities=8%  Similarity=-0.001  Sum_probs=135.0

Q ss_pred             CCceeeCCCCC-CEEEEEe-cccEEEEEcCCCce------eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC
Q psy952            6 ESTCKRRDSIK-PWLIFSN-KYYVRNMSLDATQY------SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST   77 (573)
Q Consensus         6 g~~C~~~~~~~-~~l~~s~-~~~I~~i~l~g~~~------~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~   77 (573)
                      ..+|.+..... .+|+-+. ...|+..++.....      ..+......+..|+|.+..+.| ++-...+.|+..++...
T Consensus       384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l-~sgs~Dg~v~vwd~~~~  462 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA-LSGSWDGELRLWDLAAG  462 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEETTTT
T ss_pred             eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEE-EEEeCCCcEEEEECCCC
Confidence            34565543222 3444433 46788888764221      1222234457899999765555 45556778999998765


Q ss_pred             cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc----CCCCcceEEEeCCCc-eEEEEecCCc
Q psy952           78 EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT----AIQDPRGITLHPGIG-YVYFSSWNLQ  152 (573)
Q Consensus        78 ~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~----~~~~P~~Iavdp~~g-~LYwtd~~~~  152 (573)
                      .....+......+..|++.+.++.|+ +-+..+.|.+.++.+.....+..    .......++++|... .++++- +..
T Consensus       463 ~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~d  540 (694)
T 3dm0_A          463 VSTRRFVGHTKDVLSVAFSLDNRQIV-SASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA-SWD  540 (694)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSSCEE-EEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEE-ETT
T ss_pred             cceeEEeCCCCCEEEEEEeCCCCEEE-EEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEE-eCC
Confidence            43333333345788899987665554 44556789888887765555442    223367888988542 233443 235


Q ss_pred             CeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeE
Q psy952          153 AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHI  232 (573)
Q Consensus       153 ~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~l  232 (573)
                      ..|...++........+  ...-.....|++.+.+. +.++-...+.|...++...........  ......+++..+..
T Consensus       541 ~~v~vwd~~~~~~~~~~--~~h~~~v~~v~~spdg~-~l~sg~~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~  615 (694)
T 3dm0_A          541 KTVKVWNLSNCKLRSTL--AGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDLAEGKKLYSLEA--NSVIHALCFSPNRY  615 (694)
T ss_dssp             SCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSS-EEEEEETTSBCEEEETTTTEEEECCBC--SSCEEEEEECSSSS
T ss_pred             CeEEEEECCCCcEEEEE--cCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCceEEEecC--CCcEEEEEEcCCCc
Confidence            56777777655444434  23334457889987554 444545567777777764432211111  22355666643332


Q ss_pred             EEecCCCCceEEEeccCCcceEEE
Q psy952          233 YWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       233 ywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      +++-...+.|...+..++..+..+
T Consensus       616 ~l~~~~~~~i~iwd~~~~~~~~~~  639 (694)
T 3dm0_A          616 WLCAATEHGIKIWDLESKSIVEDL  639 (694)
T ss_dssp             EEEEEETTEEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCEEEEECCCCCChhhh
Confidence            222223344665565555444433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=96.97  E-value=0.36  Score=48.09  Aligned_cols=245  Identities=11%  Similarity=0.038  Sum_probs=137.2

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC------cc
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST------EK   79 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~------~~   79 (573)
                      +|.+......+|+-+. ...|+..++..... ..+......+.+++|.+.... +.+-...+.|..+++...      ..
T Consensus        68 ~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~-lasg~~d~~i~v~~~~~~~~~~~~~~  146 (354)
T 2pbi_B           68 LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA-IACGGLDNKCSVYPLTFDKNENMAAK  146 (354)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSE-EEEESTTSEEEEEECCCCTTCCSGGG
T ss_pred             EEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCE-EEEeeCCCCEEEEEEecccccccccc
Confidence            3444332223444333 45677777654433 222223445778999986554 445556677777776432      11


Q ss_pred             eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCC-CceEEEEecCCcCeEEE
Q psy952           80 ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPG-IGYVYFSSWNLQAYIGK  157 (573)
Q Consensus        80 ~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~-~g~LYwtd~~~~~~I~r  157 (573)
                      ...+......+..+++.+.+..|+ +-+..+.|.+.++.... ..++.........+++.|. .+.++++-. ....|..
T Consensus       147 ~~~~~~h~~~v~~~~~~~~~~~l~-t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs-~Dg~v~~  224 (354)
T 2pbi_B          147 KKSVAMHTNYLSACSFTNSDMQIL-TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG-CDKKAMV  224 (354)
T ss_dssp             CEEEEECSSCEEEEEECSSSSEEE-EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE-TTSCEEE
T ss_pred             ceeeeccCCcEEEEEEeCCCCEEE-EEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe-CCCeEEE
Confidence            112222234667788876555554 44567889998986443 3344444455678888775 345555542 3567777


Q ss_pred             EeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCC-ccceeEEEeee-CCeEEEe
Q psy952          158 IGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLF-EDHIYWT  235 (573)
Q Consensus       158 ~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~-~~~~p~~ia~~-~~~lywt  235 (573)
                      .++........+  ...-...+++++.+.+..|+ +-...+.|...++.......+.... .......+++. .+.++.+
T Consensus       225 wd~~~~~~~~~~--~~h~~~v~~v~~~p~~~~l~-s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~  301 (354)
T 2pbi_B          225 WDMRSGQCVQAF--ETHESDVNSVRYYPSGDAFA-SGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA  301 (354)
T ss_dssp             EETTTCCEEEEE--CCCSSCEEEEEECTTSSEEE-EEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred             EECCCCcEEEEe--cCCCCCeEEEEEeCCCCEEE-EEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence            777644433333  23334457889987655544 4445678888888765443333321 12234566663 4555555


Q ss_pred             cCCCCceEEEeccCCcceEEEcc
Q psy952          236 DWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       236 d~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      -...+.|...+..++....++..
T Consensus       302 g~~d~~i~vwd~~~~~~~~~l~~  324 (354)
T 2pbi_B          302 GYNDYTINVWDVLKGSRVSILFG  324 (354)
T ss_dssp             EETTSCEEEEETTTCSEEEEECC
T ss_pred             EECCCcEEEEECCCCceEEEEEC
Confidence            55667787777667766555543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.94  E-value=0.44  Score=48.82  Aligned_cols=223  Identities=14%  Similarity=0.093  Sum_probs=125.6

Q ss_pred             EEEEEe-cccEEEEEcCCCceee-cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952           18 WLIFSN-KYYVRNMSLDATQYSL-VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAV   95 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~~~~-~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glav   95 (573)
                      +|+.+. ...|+..++....... +......+..++++  .+. +++-...+.|..+++........+......+..+++
T Consensus       171 ~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~-l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~  247 (445)
T 2ovr_B          171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKR-VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY  247 (445)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE-EEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred             EEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCE-EEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence            344333 4678888887554332 22234457788886  344 444456678999998765443334333356666666


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD  174 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~  174 (573)
                      +  ++ ++++-...+.|.+.++..... ..+.........|+++  ..+|+...  ....|...++........+  ...
T Consensus       248 ~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~--~d~~i~i~d~~~~~~~~~~--~~~  318 (445)
T 2ovr_B          248 D--GR-RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGS--LDTSIRVWDVETGNCIHTL--TGH  318 (445)
T ss_dssp             C--SS-CEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEEC--SSEEEEEE--TTSCEEEEETTTCCEEEEE--CCC
T ss_pred             C--CC-EEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEEC--CCEEEEEe--CCCeEEEEECCCCCEEEEE--cCC
Confidence            3  44 444444577899998865433 3333333445667763  34555544  3566777777544433333  222


Q ss_pred             CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCC--ccceeEEEeeeCCeEEEecCCCCceEEEeccCCcc
Q psy952          175 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ--KVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD  252 (573)
Q Consensus       175 l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~--~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~  252 (573)
                      ......++++  ++.|+ +-...+.|...++........+...  .......+++.++ ++++-...+.|...+..+++.
T Consensus       319 ~~~v~~~~~~--~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          319 QSLTSGMELK--DNILV-SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN-FVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             CSCEEEEEEE--TTEEE-EEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCE
T ss_pred             cccEEEEEEe--CCEEE-EEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECCC-EEEEEeCCCeEEEEECCCCce
Confidence            2334455554  45444 4446678888888544433333321  1234566777554 444545667888888777776


Q ss_pred             eEEE
Q psy952          253 YRVL  256 (573)
Q Consensus       253 ~~~l  256 (573)
                      ...+
T Consensus       395 ~~~~  398 (445)
T 2ovr_B          395 IRNL  398 (445)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            6655

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=96.94  E-value=0.00053  Score=59.68  Aligned_cols=117  Identities=20%  Similarity=0.321  Sum_probs=73.8

Q ss_pred             CcccccccccccCccceee-eccceeecC-----CCCC---CCcccCCc-cccC-CCeeeec--ceeeCCcCCCCCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGS-----GNKE---NSTCSSSQ-FRCN-NGKCIDY--HLVCNKESDCEDDSDE  340 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~-----d~~~---~~~C~~~~-~~C~-~g~Ci~~--~~~cd~~~~c~d~sde  340 (573)
                      ++|.+.|.....=...++| |+.||....     +++.   +++|.... ..|. ++.|+..  +|.|...++......+
T Consensus         3 ~~C~~~C~~~~~C~~~~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~   82 (143)
T 2bou_A            3 RGCARWCPQDSSCVNATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGA   82 (143)
T ss_dssp             CCCCTTCCTTEEESSSSCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCC
T ss_pred             CCCcCcCCCCCEEcCCCEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCc
Confidence            4666666543210124899 999998742     2222   67787643 3675 4678865  6888655555433222


Q ss_pred             C-------CCC-CCccccCCCCCccCC--ccccCCCCccccCCCCceecCCCccccccccc
Q psy952          341 P-------LHC-NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDGKACTDIDEC  391 (573)
Q Consensus       341 ~-------~~c-~~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~C  391 (573)
                      .       ..| ++++|.. ....|.+  .|.+..++|.|.|+.+|......+.++..++|
T Consensus        83 ~~~~~~~~~~C~dideC~~-~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~C~~~~~C  142 (143)
T 2bou_A           83 KTFKNESENTCQDVDECSS-GQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVC  142 (143)
T ss_dssp             SCBSSGGGCCEEECCHHHH-TCCCCCTTSEEEECSSCEEEECCSSSCBCTTCCSSBTTCCB
T ss_pred             cccccCCCCCcCCccCccC-cCCCCCCCCEEECCCCCEEeeCCCCcccCCCCccCccCCcc
Confidence            1       134 4778875 4577875  89999999999999999887766555555444

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.88  E-value=0.38  Score=47.50  Aligned_cols=198  Identities=11%  Similarity=0.047  Sum_probs=111.7

Q ss_pred             cceEEEEE-----EcCCCEEEEEECCCCeEEEEEcCCCc-------ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeE
Q psy952           45 LNVVAMDF-----HYKENRFYFADVAAKTIYRSRVGSTE-------KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQL  112 (573)
Q Consensus        45 ~~~~~v~~-----d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I  112 (573)
                      ..+..|+|     .+.++.++++-...+.|...++....       ....+......+..|++.+.+ .+.++-...+.|
T Consensus        22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v  100 (343)
T 2xzm_R           22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTL  100 (343)
T ss_dssp             SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSST-TEEEEEETTSEE
T ss_pred             hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCC-CEEEEEcCCCcE
Confidence            34677877     44356677777777778887775421       112233333567888888654 444565667889


Q ss_pred             EEEEcCC-CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccC----
Q psy952          113 DVAELDG-TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFT----  187 (573)
Q Consensus       113 ~~~~ldg-~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~----  187 (573)
                      .+.++.. .....+.........|+++|...+|+-..  ....|...++.+.....+............+++.+..    
T Consensus       101 ~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  178 (343)
T 2xzm_R          101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG--AEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSAN  178 (343)
T ss_dssp             EEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE--TTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCS
T ss_pred             EEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc--CCCEEEEEeccCCceeeeecccCCCceeeeeeecccccccc
Confidence            9999864 44444545555688999999766665544  3456666666643322211000111223456665443    


Q ss_pred             -----CeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEec
Q psy952          188 -----ERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       188 -----~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~  247 (573)
                           +.++.+-...+.|...+..+.....+...  ......|++. ++.++.+-...+.|..-+.
T Consensus       179 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          179 KVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             CCCSSCCEEEEEETTSEEEEEETTTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             ccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCc--cccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence                 13444445567777777555433333222  2345677774 3455555555666666654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.87  E-value=0.17  Score=56.60  Aligned_cols=215  Identities=7%  Similarity=-0.057  Sum_probs=124.7

Q ss_pred             cccEEEEEcCCCceeecc--------c--CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc---CCCCCc
Q psy952           24 KYYVRNMSLDATQYSLVH--------Q--DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR---HDSHGL   90 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~~~~--------~--~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~---~~~~~p   90 (573)
                      ...|.+++.....+....        .  ....+.+|..|. .+.||+.... +.|++++..+.....+..   .....+
T Consensus       332 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lWigt~~-~Gl~~~~~~~~~~~~~~~~~~~~~~~v  409 (781)
T 3v9f_A          332 GGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-QGKLWIGTDG-GGINVFENGKRVAIYNKENRELLSNSV  409 (781)
T ss_dssp             SSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-TSCEEEEEBS-SCEEEEETTEEEEECC-----CCCSBE
T ss_pred             CCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-CCCEEEEeCC-CcEEEEECCCCeEEEccCCCCCCCcce
Confidence            566777776654433221        1  123477888884 5778877543 348888875432221111   112456


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc---CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT---AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR  167 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~---~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~  167 (573)
                      .+|+.|. .++||+... .+.|.+++......+.+..   .....++|+.|+ .|.||+...   ..|.+.+......+.
T Consensus       410 ~~i~~d~-~g~lWigt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwigt~---~Gl~~~~~~~~~~~~  483 (781)
T 3v9f_A          410 LCSLKDS-EGNLWFGTY-LGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWIGTH---AGVFVIDLASKKVIH  483 (781)
T ss_dssp             EEEEECT-TSCEEEEET-TEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEEEET---TEEEEEESSSSSCCE
T ss_pred             EEEEECC-CCCEEEEec-cCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEEEEC---CceEEEeCCCCeEEe
Confidence            7788874 567777643 3468888776544333322   223578899987 678887763   468888877655444


Q ss_pred             EEecCC--C--CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCcc--ceeEEEeee-CCeEEEecCCCC
Q psy952          168 ILTHED--D--IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKV--PHVFALTLF-EDHIYWTDWNTK  240 (573)
Q Consensus       168 l~~~~~--~--l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~--~~p~~ia~~-~~~lywtd~~~~  240 (573)
                      +.. ..  .  ...+..|+.| ..++||++-.+. .|.+++.++...+.+.....+  ....+|..+ ++.||++..  .
T Consensus       484 ~~~-~~~~~~~~~~i~~i~~d-~~g~lWigt~~~-Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--~  558 (781)
T 3v9f_A          484 HYD-TSNSQLLENFVRSIAQD-SEGRFWIGTFGG-GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--E  558 (781)
T ss_dssp             EEC-TTTSSCSCSCEEEEEEC-TTCCEEEEESSS-CEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--T
T ss_pred             ccc-CcccccccceeEEEEEc-CCCCEEEEEcCC-CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--C
Confidence            431 11  0  2345688888 577888876543 478888876655444322112  245677775 456666644  3


Q ss_pred             ce-EEEeccCCc
Q psy952          241 SI-NRADKFNGR  251 (573)
Q Consensus       241 ~I-~~~~~~~g~  251 (573)
                      .| .+.++.+++
T Consensus       559 Glv~~~d~~~~~  570 (781)
T 3v9f_A          559 GLVCFPSARNFD  570 (781)
T ss_dssp             EEEEESCTTTCC
T ss_pred             CceEEECCCCCc
Confidence            45 776655543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.86  E-value=0.18  Score=51.59  Aligned_cols=248  Identities=12%  Similarity=0.067  Sum_probs=130.1

Q ss_pred             CceeeCCC-CCCEEEEEe-cccEEEEEcCC---Cc-e--eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC---
Q psy952            7 STCKRRDS-IKPWLIFSN-KYYVRNMSLDA---TQ-Y--SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG---   75 (573)
Q Consensus         7 ~~C~~~~~-~~~~l~~s~-~~~I~~i~l~g---~~-~--~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~---   75 (573)
                      .+|.+... ...+|+.+. ...|+..++..   .. .  .........+.+|+|.+..+.|+.+ ...+.|..++++   
T Consensus        66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~dg~i~vwd~~~~~  144 (437)
T 3gre_A           66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS-SKDGQIIVLKVNHYQ  144 (437)
T ss_dssp             EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE-ETTSEEEEEEEEEEE
T ss_pred             eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE-eCCCEEEEEEecccc
Confidence            34554432 234555544 45777777754   21 1  1222334568899999755555544 456677777663   


Q ss_pred             -CCcceEEEcC-----------CCCCcceeEEee-cCCcEEEEeCCCCeEEEEEcCCCce-eEecc--CCCCcceEEEeC
Q psy952           76 -STEKERVIRH-----------DSHGLEGLAVDW-VGRKLYWLDRHSKQLDVAELDGTNR-KTLKT--AIQDPRGITLHP  139 (573)
Q Consensus        76 -g~~~~~i~~~-----------~~~~p~glavD~-~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~--~~~~P~~Iavdp  139 (573)
                       +.....+...           .-..+..+++-+ ..+.++++-...+.|.+.++..... ..+..  .......|+++|
T Consensus       145 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~  224 (437)
T 3gre_A          145 QESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE  224 (437)
T ss_dssp             ETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT
T ss_pred             CCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC
Confidence             2211111100           011222222111 1245555555678999999865443 33333  345689999999


Q ss_pred             CCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEecc---CCeEEEEeCCCCeEEEEeCCCCcEEEEEeC
Q psy952          140 GIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF---TERLYWADAHLDYIASVDLDGKHKHIVISG  216 (573)
Q Consensus       140 ~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~---~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~  216 (573)
                      ...+|+...  ..+.|...++........+. ...-.....|++.+.   ++++.++-...+.|...++........+.+
T Consensus       225 ~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  301 (437)
T 3gre_A          225 ECCVLILGT--TRGIIDIWDIRFNVLIRSWS-FGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFIN  301 (437)
T ss_dssp             TSCEEEEEE--TTSCEEEEETTTTEEEEEEB-CTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEES
T ss_pred             CCCEEEEEc--CCCeEEEEEcCCccEEEEEe-cCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEc
Confidence            755565554  24567666665432222110 111112245555432   355556666667788888874443322221


Q ss_pred             Cc-------------------------cceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          217 QK-------------------------VPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       217 ~~-------------------------~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      ..                         ......|++.++.++++-...+.|..-+..+++...++..
T Consensus       302 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          302 SDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             SSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             CCCCCccceecccccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEec
Confidence            10                         0113446666666777766677888777777776665543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.85  E-value=0.37  Score=49.39  Aligned_cols=195  Identities=14%  Similarity=0.100  Sum_probs=111.8

Q ss_pred             eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEe
Q psy952           47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTL  125 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l  125 (573)
                      +..+++|  ++ ++++-...+.|..+++........+......+..|++   .+.+.++-...+.|.+.++.... ...+
T Consensus       136 v~~~~~d--~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~  209 (435)
T 1p22_A          136 VYCLQYD--DQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTL  209 (435)
T ss_dssp             EEEEECC--SS-EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEE
T ss_pred             EEEEEEC--CC-EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE---CCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence            5566653  44 4455556678999998765544444433345666666   34566666667899999987443 3344


Q ss_pred             ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE---EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952          126 KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT---RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS  202 (573)
Q Consensus       126 ~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~---~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  202 (573)
                      .........|++++  +.|+...  ..+.|...++......   ...  ...-.....++++  +..|+.+. ..+.|..
T Consensus       210 ~~h~~~v~~l~~~~--~~l~s~s--~dg~i~vwd~~~~~~~~~~~~~--~~~~~~v~~~~~~--~~~l~s~~-~dg~i~v  280 (435)
T 1p22_A          210 IHHCEAVLHLRFNN--GMMVTCS--KDRSIAVWDMASPTDITLRRVL--VGHRAAVNVVDFD--DKYIVSAS-GDRTIKV  280 (435)
T ss_dssp             CCCCSCEEEEECCT--TEEEEEE--TTSCEEEEECSSSSCCEEEEEE--CCCSSCEEEEEEE--TTEEEEEE-TTSEEEE
T ss_pred             cCCCCcEEEEEEcC--CEEEEee--CCCcEEEEeCCCCCCceeeeEe--cCCCCcEEEEEeC--CCEEEEEe-CCCeEEE
Confidence            34444566777764  4454443  3456766666544322   222  2222233456653  55555554 5678888


Q ss_pred             EeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          203 VDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       203 ~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      .++........+.+. ......+++.++. +++-...+.|...+..+++....+..
T Consensus       281 wd~~~~~~~~~~~~~-~~~v~~~~~~~~~-l~~g~~dg~i~iwd~~~~~~~~~~~~  334 (435)
T 1p22_A          281 WNTSTCEFVRTLNGH-KRGIACLQYRDRL-VVSGSSDNTIRLWDIECGACLRVLEG  334 (435)
T ss_dssp             EETTTCCEEEEEECC-SSCEEEEEEETTE-EEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EECCcCcEEEEEcCC-CCcEEEEEeCCCE-EEEEeCCCeEEEEECCCCCEEEEEeC
Confidence            888755443333332 3345666665554 44444567788888777776666544

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=96.84  E-value=0.43  Score=47.06  Aligned_cols=225  Identities=8%  Similarity=-0.044  Sum_probs=121.2

Q ss_pred             CEEEEEe-cccEEEEEcCCCc--------eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC
Q psy952           17 PWLIFSN-KYYVRNMSLDATQ--------YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS   87 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~--------~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~   87 (573)
                      .+|+-+. ...|+..++....        ...+......+..|+|.+....| ++-...+.|...++........+....
T Consensus        40 ~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l-~s~s~D~~v~lwd~~~~~~~~~~~~h~  118 (343)
T 2xzm_R           40 PVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA-ISSSWDKTLRLWDLRTGTTYKRFVGHQ  118 (343)
T ss_dssp             CEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE-EEEETTSEEEEEETTSSCEEEEEECCC
T ss_pred             CEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE-EEEcCCCcEEEEECCCCcEEEEEcCCC
Confidence            3454443 4678877775321        11122233457899998755544 455567789999987544332333333


Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec---cCCCCcceEEEeCCCc---------eEEEEecCCcCeE
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK---TAIQDPRGITLHPGIG---------YVYFSSWNLQAYI  155 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~---~~~~~P~~Iavdp~~g---------~LYwtd~~~~~~I  155 (573)
                      ..+..|++.+.++.|+-+ ...+.|.+.++.+.....+.   ........+++.|...         .++.+- +....|
T Consensus       119 ~~v~~v~~sp~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~-~~d~~i  196 (343)
T 2xzm_R          119 SEVYSVAFSPDNRQILSA-GAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV-GWDGRL  196 (343)
T ss_dssp             SCEEEEEECSSTTEEEEE-ETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEE-ETTSEE
T ss_pred             CcEEEEEECCCCCEEEEE-cCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEE-cCCCEE
Confidence            578889998766655544 45678999898765544333   1233466777777531         233332 234566


Q ss_pred             EEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcE-EEEEeCCccceeEEEeeeCCeEE
Q psy952          156 GKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHK-HIVISGQKVPHVFALTLFEDHIY  233 (573)
Q Consensus       156 ~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~-~~l~~~~~~~~p~~ia~~~~~ly  233 (573)
                      ...+..+.....+.   ..-.....|++.+.+..|. +-...+.|...++. .... ..+..+   .....|++..+.-+
T Consensus       197 ~iwd~~~~~~~~~~---~h~~~v~~~~~s~~g~~l~-sgs~dg~v~iwd~~~~~~~~~~~~~~---~~v~~v~~sp~~~~  269 (343)
T 2xzm_R          197 KVWNTNFQIRYTFK---AHESNVNHLSISPNGKYIA-TGGKDKKLLIWDILNLTYPQREFDAG---STINQIAFNPKLQW  269 (343)
T ss_dssp             EEEETTTEEEEEEE---CCSSCEEEEEECTTSSEEE-EEETTCEEEEEESSCCSSCSEEEECS---SCEEEEEECSSSCE
T ss_pred             EEEcCCCceeEEEc---CccccceEEEECCCCCEEE-EEcCCCeEEEEECCCCcccceeecCC---CcEEEEEECCCCCE
Confidence            66665443333333   2233457888987655554 44456778887873 3222 222222   23556666433222


Q ss_pred             EecCCCCceEEEeccCCc
Q psy952          234 WTDWNTKSINRADKFNGR  251 (573)
Q Consensus       234 wtd~~~~~I~~~~~~~g~  251 (573)
                      ++-...+.|...+..++.
T Consensus       270 la~~~d~~v~iw~~~~~~  287 (343)
T 2xzm_R          270 VAVGTDQGVKIFNLMTQS  287 (343)
T ss_dssp             EEEEESSCEEEEESSSCC
T ss_pred             EEEECCCCEEEEEeCCCC
Confidence            222223445555544443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=96.83  E-value=0.024  Score=62.72  Aligned_cols=186  Identities=9%  Similarity=-0.063  Sum_probs=105.5

Q ss_pred             EEEEEecccEEEEEcCCCceeecc-cCC------------------cceEEEEEEcCCCEEEEEECCC------------
Q psy952           18 WLIFSNKYYVRNMSLDATQYSLVH-QDL------------------LNVVAMDFHYKENRFYFADVAA------------   66 (573)
Q Consensus        18 ~l~~s~~~~I~~i~l~g~~~~~~~-~~~------------------~~~~~v~~d~~~~~ly~~d~~~------------   66 (573)
                      +|+++..+.|+.+++.+.....+. .+.                  ....+++|.+.++.|+++....            
T Consensus       123 ~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~  202 (719)
T 1z68_A          123 KLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYG  202 (719)
T ss_dssp             CEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECC
T ss_pred             EEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccC
Confidence            566777788999998765443332 111                  1124789999888888764321            


Q ss_pred             ---------------------CeEEEEEcCCCcce---EEEc-----CCCCCcceeEEeecCCcEEEE--eCCC--CeEE
Q psy952           67 ---------------------KTIYRSRVGSTEKE---RVIR-----HDSHGLEGLAVDWVGRKLYWL--DRHS--KQLD  113 (573)
Q Consensus        67 ---------------------~~I~~~~~~g~~~~---~i~~-----~~~~~p~glavD~~~~~LY~t--d~~~--~~I~  113 (573)
                                           ..|+.+++++....   .+..     .....+..+++.+. ++|+++  +...  ..|.
T Consensus       203 ~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~  281 (719)
T 1z68_A          203 DEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLS  281 (719)
T ss_dssp             SSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEE
T ss_pred             CCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEE
Confidence                                 15667777664421   1110     11123456666665 455554  3222  3588


Q ss_pred             EEE----cCCCceeEecc----C-CCCc-----ceEEEeCCCceEEEE-e-cCCcCeEEEEeccCCCcEEEEecCCCCCC
Q psy952          114 VAE----LDGTNRKTLKT----A-IQDP-----RGITLHPGIGYVYFS-S-WNLQAYIGKIGMDGSNFTRILTHEDDIAW  177 (573)
Q Consensus       114 ~~~----ldg~~~~~l~~----~-~~~P-----~~Iavdp~~g~LYwt-d-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~  177 (573)
                      +.+    +.+...+.+..    . -...     ..+++.|....||+. . .....+|+..++++...+.+.   ..-..
T Consensus       282 ~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt---~~~~~  358 (719)
T 1z68_A          282 ICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQIT---SGKWE  358 (719)
T ss_dssp             EEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECS---CSSSC
T ss_pred             EEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecc---cCceE
Confidence            888    65544333331    1 1112     267899977777763 2 222457999998887654443   21111


Q ss_pred             CceEEEeccCCeEEEEeCC------CCeEEEEeCCCC
Q psy952          178 PNALTLDYFTERLYWADAH------LDYIASVDLDGK  208 (573)
Q Consensus       178 P~glaiD~~~~~LYw~D~~------~~~I~~~~~dG~  208 (573)
                      ..++... .+++||++...      ..+|+++++++.
T Consensus       359 v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g  394 (719)
T 1z68_A          359 AINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSY  394 (719)
T ss_dssp             EEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSS
T ss_pred             EEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCC
Confidence            2344444 68889888754      347888888654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.82  E-value=0.054  Score=50.12  Aligned_cols=132  Identities=14%  Similarity=0.128  Sum_probs=84.3

Q ss_pred             CEEEEEecccEEEEEcCCCc---e----eeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC-------CcceE
Q psy952           17 PWLIFSNKYYVRNMSLDATQ---Y----SLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS-------TEKER   81 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l~g~~---~----~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g-------~~~~~   81 (573)
                      .+|+......|+.-.+....   +    +.+-. +..+...|+|++ ++.||.+  ..+.|++++...       .....
T Consensus         5 ~~l~~v~~d~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~   81 (236)
T 1tl2_A            5 SMLRGVYQDKFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKK   81 (236)
T ss_dssp             CCEEEEETTEEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred             eEEEEEeCCcEEecCCCCCcccchhhhccccCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccE
Confidence            34444445577766654332   2    12222 356778999999 9999999  677899999744       12223


Q ss_pred             EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc--CCCc-----eeEec-cCCCCcceEEEeCCCceEEEEecCCcC
Q psy952           82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL--DGTN-----RKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQA  153 (573)
Q Consensus        82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l--dg~~-----~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~  153 (573)
                      |-..+...-..|.+| .++.||..  ..+.|++.+.  ++..     ..+|. .+...-..|+++| .|.||-.. .  .
T Consensus        82 IG~~Gw~~F~a~~fD-~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~-d--g  154 (236)
T 1tl2_A           82 IGNGGWNQFQFLFFD-PNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH-G--Q  154 (236)
T ss_dssp             EECSCGGGCSEEEEC-TTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE-T--T
T ss_pred             ecccccccceEEEEC-CCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECC-CceEEEEe-C--C
Confidence            333344556789999 58899999  3489999876  3322     12222 2445568999999 78999877 2  3


Q ss_pred             eEEEE
Q psy952          154 YIGKI  158 (573)
Q Consensus       154 ~I~r~  158 (573)
                      .|+|.
T Consensus       155 ~lyr~  159 (236)
T 1tl2_A          155 QFYKA  159 (236)
T ss_dssp             EEEEE
T ss_pred             cEEec
Confidence            46553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.80  E-value=0.1  Score=58.20  Aligned_cols=173  Identities=7%  Similarity=0.092  Sum_probs=97.6

Q ss_pred             cEEEEEcCCC-ceeecccCCcc-eEEEEEEcCCCEEEEEECCC----CeEEEEEcCCCcce--EEEcC-CCCCcceeEEe
Q psy952           26 YVRNMSLDAT-QYSLVHQDLLN-VVAMDFHYKENRFYFADVAA----KTIYRSRVGSTEKE--RVIRH-DSHGLEGLAVD   96 (573)
Q Consensus        26 ~I~~i~l~g~-~~~~~~~~~~~-~~~v~~d~~~~~ly~~d~~~----~~I~~~~~~g~~~~--~i~~~-~~~~p~glavD   96 (573)
                      .|+++++++. ..  +...+.. ..+++|.+.++.||++....    ..|++.++.+...+  .+... .-....++++.
T Consensus       202 ~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~S  279 (751)
T 2xe4_A          202 TIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKA  279 (751)
T ss_dssp             EEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEEC
T ss_pred             EEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEEC
Confidence            4999999876 42  1111111 24678988888898886532    37999999765422  33321 11223455666


Q ss_pred             ecCCcEEEEeC--CCCeEEEEEcCCC--ce--eEeccCCCCc-ceEEEeCCCceEEEE-ecC--CcCeEEEEeccC-CCc
Q psy952           97 WVGRKLYWLDR--HSKQLDVAELDGT--NR--KTLKTAIQDP-RGITLHPGIGYVYFS-SWN--LQAYIGKIGMDG-SNF  165 (573)
Q Consensus        97 ~~~~~LY~td~--~~~~I~~~~ldg~--~~--~~l~~~~~~P-~~Iavdp~~g~LYwt-d~~--~~~~I~r~~ldG-~~~  165 (573)
                      +.++.|+|+..  ....|+++++++.  ..  +.|......+ ..+... ..+.|||. +..  ...+|+++++++ ...
T Consensus       280 pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~  358 (751)
T 2xe4_A          280 ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDW  358 (751)
T ss_dssp             TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCC
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccc
Confidence            67778888653  3457888998864  22  3444333233 222222 25666665 432  356899999884 232


Q ss_pred             EE-EEecCCCCC-CCceEEEeccCCeEEEEeCCC--CeEEEEeC
Q psy952          166 TR-ILTHEDDIA-WPNALTLDYFTERLYWADAHL--DYIASVDL  205 (573)
Q Consensus       166 ~~-l~~~~~~l~-~P~glaiD~~~~~LYw~D~~~--~~I~~~~~  205 (573)
                      +. ++  ...-. ...++++  .++.||++-...  .+|+.+++
T Consensus       359 ~~~li--~~~~~~~l~~~~~--~~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          359 SHVLV--DHSEDVFMESIAV--RSNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             CCEEE--CCCSSEEEEEEEE--CSSEEEEEEEETTEEEEEEEEC
T ss_pred             eeeEE--CCCCCcEEEEEEE--ECCEEEEEEEeCCEEEEEEEec
Confidence            33 44  22211 1234444  477888875543  46888885

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.78  E-value=0.44  Score=46.33  Aligned_cols=207  Identities=12%  Similarity=0.034  Sum_probs=118.6

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-----eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-----ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG  119 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg  119 (573)
                      ..+.+|+|.+..+.++++-...+.|...++.....     ...+......+..|++.+.++.|+.+ ...+.|.+.+...
T Consensus        39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~-~~d~~i~~~~~~~  117 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG-SWDGTLRLWDLTT  117 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTT
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE-cccccceEEeecc
Confidence            45889999988777777777778888888765321     11222223577888998765555544 4567888888776


Q ss_pred             CceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCC-eEEEEeCCC
Q psy952          120 TNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE-RLYWADAHL  197 (573)
Q Consensus       120 ~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~-~LYw~D~~~  197 (573)
                      ....... ........+...+...+|+...  ....|...++.+.....+.. .........+++.+... .++++-...
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~~~~~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~s~~~d  194 (340)
T 4aow_A          118 GTTTRRFVGHTKDVLSVAFSSDNRQIVSGS--RDKTIKLWNTLGVCKYTVQD-ESHSEWVSCVRFSPNSSNPIIVSCGWD  194 (340)
T ss_dssp             TEEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSCEEEECTTSCEEEEECS-SSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred             cceeeeecCCCCceeEEEEeecCccceeec--CCCeEEEEEeCCCceEEEEe-ccccCcccceEEccCCCCcEEEEEcCC
Confidence            5544433 3344456666777655555443  23455555555444333320 11122334566654443 344555556


Q ss_pred             CeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          198 DYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       198 ~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      +.|...++..........+. .....+|++. ++.++++-...+.|...+..++.....+
T Consensus       195 ~~i~i~d~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~  253 (340)
T 4aow_A          195 KLVKVWNLANCKLKTNHIGH-TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL  253 (340)
T ss_dssp             SCEEEEETTTTEEEEEECCC-SSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCCceeeEecCC-CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence            67887887765544444332 2345677774 3455555555667776665555444333

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=96.75  E-value=0.00049  Score=51.38  Aligned_cols=46  Identities=35%  Similarity=0.710  Sum_probs=38.4

Q ss_pred             CCccccCCCCCccCCccccCCC-CccccCCCCceecCCCccccccccc
Q psy952          345 NVDECAKVETNQCGHKCVDTLT-GYYCECNTGYKLLEDGKACTDIDEC  391 (573)
Q Consensus       345 ~~~~C~~~~~~~C~~~C~~~~~-~~~C~C~~~f~c~~~~~c~~~~~~C  391 (573)
                      ++++|.. .+..|.+.|.+..+ ++.|+|+.+|++..+++.|.++++|
T Consensus         4 d~~eC~~-~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec   50 (69)
T 1kli_L            4 DQLICVN-ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY   50 (69)
T ss_dssp             CCCCTTS-GGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred             ccccccC-CCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCcccc
Confidence            3567876 67889999999998 7999999999999887777776665

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.75  E-value=0.00045  Score=49.14  Aligned_cols=45  Identities=27%  Similarity=0.701  Sum_probs=36.8

Q ss_pred             ccccCCCCCccCCccccCCCCccccCCCCceecCCCcccccccccC
Q psy952          347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECI  392 (573)
Q Consensus       347 ~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~C~  392 (573)
                      +||.. .+..|.+.|.|+.++|.|.|+.+|++..+++.|.++++|.
T Consensus         2 dEC~~-~~~~C~~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~   46 (55)
T 2jkh_L            2 KLCSL-DNGDCDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPYP   46 (55)
T ss_dssp             CCTTT-GGGGCSSEEEEETTEEEEECCTTEEECTTSSCEEESSSSC
T ss_pred             ccccC-CCCCcCcEeEcCCCCeEEeCCCCCEECCCCCeeccCcccc
Confidence            35654 5677988999999999999999999988777777777664

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.1  Score=58.27  Aligned_cols=201  Identities=7%  Similarity=-0.027  Sum_probs=114.1

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCcee---ecccCCcceEEEEEEcCC-CEEEEEECCCCeEEEEEcCCCcce-
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQYS---LVHQDLLNVVAMDFHYKE-NRFYFADVAAKTIYRSRVGSTEKE-   80 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~---~~~~~~~~~~~v~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~~-   80 (573)
                      .+|.+......+|+.+. .+.|+..++.+....   .+......+.+|+|.+.. +.++++-...+.|+..++.+.... 
T Consensus        12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~   91 (753)
T 3jro_A           12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQ   91 (753)
T ss_dssp             EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEE
T ss_pred             eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccc
Confidence            34555432334555554 567888887643222   222234557899997652 445555556778888888765422 


Q ss_pred             -EEEcCCCCCcceeEEeecC-CcEEEEeCCCCeEEEEEcCCCce---eEeccCCCCcceEEEeCC------------Cce
Q psy952           81 -RVIRHDSHGLEGLAVDWVG-RKLYWLDRHSKQLDVAELDGTNR---KTLKTAIQDPRGITLHPG------------IGY  143 (573)
Q Consensus        81 -~i~~~~~~~p~glavD~~~-~~LY~td~~~~~I~~~~ldg~~~---~~l~~~~~~P~~Iavdp~------------~g~  143 (573)
                       ..+......+..+++.+.. +.++++-...+.|.+.++.....   ..+.........|+++|.            .+.
T Consensus        92 ~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~  171 (753)
T 3jro_A           92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR  171 (753)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGC
T ss_pred             cccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCC
Confidence             2233234578888888762 44555555678999999876522   222234455788899884            244


Q ss_pred             EEEEecCCcCeEEEEeccCCCc--EEEEecCCCCCCCceEEEeccC--CeEEEEeCCCCeEEEEeCCCC
Q psy952          144 VYFSSWNLQAYIGKIGMDGSNF--TRILTHEDDIAWPNALTLDYFT--ERLYWADAHLDYIASVDLDGK  208 (573)
Q Consensus       144 LYwtd~~~~~~I~r~~ldG~~~--~~l~~~~~~l~~P~glaiD~~~--~~LYw~D~~~~~I~~~~~dG~  208 (573)
                      ++++-. ..+.|...++.....  ..+......-.....|++.+..  +.++++-...+.|...++...
T Consensus       172 ~l~sgs-~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          172 KFVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             CEEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             EEEEEE-CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence            444432 245566666554322  1111102223345688998763  555566556677777776653

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=96.67  E-value=0.015  Score=58.36  Aligned_cols=154  Identities=8%  Similarity=-0.071  Sum_probs=85.5

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc--ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc--
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE--KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN--  121 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~--  121 (573)
                      .+..|+|.+.++.|+ +-...+.|+.+++.+..  ....+......+..|++.+.++.|+.+. ..+.|.+.++....  
T Consensus        13 ~v~~~~~s~~g~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~d~~v~vwd~~~~~~~   90 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFV-TTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCS-QDRNAYVYEKRPDGTW   90 (377)
T ss_dssp             CCSCCEECSSSSEEE-CCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEE-TTSSEEEC------CC
T ss_pred             cEEEEEECCCCCEEE-EecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEe-CCCeEEEEEcCCCCce
Confidence            466788887555444 33345667777766542  1112222235678888887665555544 56788888887544  


Q ss_pred             --eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC----cEEEEecCCCCCCCceEEEeccCCeEEEEeC
Q psy952          122 --RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN----FTRILTHEDDIAWPNALTLDYFTERLYWADA  195 (573)
Q Consensus       122 --~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~----~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~  195 (573)
                        ...+.........|+++|...+|+....  ...|...+++...    ...+.  ...-.....|++.+.+..|+.+. 
T Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~~~~-  165 (377)
T 3dwl_C           91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSG--ARVISVCYFEQENDWWVSKHLK--RPLRSTILSLDWHPNNVLLAAGC-  165 (377)
T ss_dssp             CCEEECCCCSSCEEEEECCTTSSCCEEEES--SSCEEECCC-----CCCCEEEC--SSCCSCEEEEEECTTSSEEEEEE-
T ss_pred             eeeeEecccCCceEEEEECCCCCEEEEEec--CCeEEEEEECCcccceeeeEee--cccCCCeEEEEEcCCCCEEEEEe-
Confidence              2233344556889999997666666552  4566666666543    23332  11334457899987665555544 


Q ss_pred             CCCeEEEEeCC
Q psy952          196 HLDYIASVDLD  206 (573)
Q Consensus       196 ~~~~I~~~~~d  206 (573)
                      ..+.|...++.
T Consensus       166 ~d~~i~iwd~~  176 (377)
T 3dwl_C          166 ADRKAYVLSAY  176 (377)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCEEEEEEEE
Confidence            45666666653

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=96.66  E-value=0.35  Score=53.04  Aligned_cols=206  Identities=12%  Similarity=0.065  Sum_probs=128.4

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-----eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-----ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD  118 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld  118 (573)
                      ...+.+|++.+.+..++++-...+.|...++.....     ...+......+..|++.+.++.| ++-+..+.|.+.++.
T Consensus       382 ~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l-~sgs~Dg~v~vwd~~  460 (694)
T 3dm0_A          382 TDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA-LSGSWDGELRLWDLA  460 (694)
T ss_dssp             SSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEE-EEEETTSEEEEEETT
T ss_pred             CceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEE-EEEeCCCcEEEEECC
Confidence            344788999887778888888888898888864321     11233333567889998755444 555567899999986


Q ss_pred             CCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec-CCCCCCCceEEEeccCC-eEEEEeC
Q psy952          119 GTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH-EDDIAWPNALTLDYFTE-RLYWADA  195 (573)
Q Consensus       119 g~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~-~~~l~~P~glaiD~~~~-~LYw~D~  195 (573)
                      ... .+.+.........|+++|...+|+-..  ....|..-++.+.....+... .........+++.+... .++++-.
T Consensus       461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s  538 (694)
T 3dm0_A          461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS--RDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS  538 (694)
T ss_dssp             TTEEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             CCcceeEEeCCCCCEEEEEEeCCCCEEEEEe--CCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence            543 344445556688999999766665544  345666666655443333310 01112245677776542 3555555


Q ss_pred             CCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcce
Q psy952          196 HLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDY  253 (573)
Q Consensus       196 ~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~  253 (573)
                      ..+.|...++........+.+. ......|++. ++.++.+-...+.|..-+..+++..
T Consensus       539 ~d~~v~vwd~~~~~~~~~~~~h-~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~  596 (694)
T 3dm0_A          539 WDKTVKVWNLSNCKLRSTLAGH-TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL  596 (694)
T ss_dssp             TTSCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEE
T ss_pred             CCCeEEEEECCCCcEEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceE
Confidence            6778888888766554444432 3456778874 4566666666777877776666543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=96.64  E-value=0.28  Score=50.03  Aligned_cols=158  Identities=10%  Similarity=0.107  Sum_probs=93.5

Q ss_pred             ceeeCCCCCCEEEEEecccEEEEEcC-CCc-eee-------cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc
Q psy952            8 TCKRRDSIKPWLIFSNKYYVRNMSLD-ATQ-YSL-------VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE   78 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~~~~I~~i~l~-g~~-~~~-------~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~   78 (573)
                      ++.+......+|+.+....|+..++. +.. ...       +......+..|+|++.+..++++-...+.|..+++....
T Consensus       181 ~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~  260 (447)
T 3dw8_B          181 NSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASA  260 (447)
T ss_dssp             CEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCS
T ss_pred             EEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCc
Confidence            34443333346666666788888887 222 221       112334588999998774555665667789999987654


Q ss_pred             c----eEEEcCCCC------------CcceeEEeecCCcEEEEeCCCCeEEEEEcCC--CceeEeccC--CC--------
Q psy952           79 K----ERVIRHDSH------------GLEGLAVDWVGRKLYWLDRHSKQLDVAELDG--TNRKTLKTA--IQ--------  130 (573)
Q Consensus        79 ~----~~i~~~~~~------------~p~glavD~~~~~LY~td~~~~~I~~~~ldg--~~~~~l~~~--~~--------  130 (573)
                      .    ...+.....            .+..|++.+.++.|.....  +.|.+.++..  .....+...  +.        
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~  338 (447)
T 3dw8_B          261 LCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE  338 (447)
T ss_dssp             SSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred             cccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCccccceeecccccccccccccc
Confidence            3    233333222            6788999886666655544  8999999863  333333211  11        


Q ss_pred             -----CcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE
Q psy952          131 -----DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL  169 (573)
Q Consensus       131 -----~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~  169 (573)
                           ....++++|...+|+...  ..+.|...++.......+.
T Consensus       339 ~~~i~~~~~~~~s~~~~~l~s~s--~dg~v~iwd~~~~~~~~~~  380 (447)
T 3dw8_B          339 NDCIFDKFECCWNGSDSVVMTGS--YNNFFRMFDRNTKRDITLE  380 (447)
T ss_dssp             TSGGGCCCCEEECTTSSEEEEEC--STTEEEEEETTTCCEEEEE
T ss_pred             ccccccceEEEECCCCCEEEEec--cCCEEEEEEcCCCcceeee
Confidence                 122499999766664433  4667888888766554443

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=96.55  E-value=0.0054  Score=66.04  Aligned_cols=110  Identities=17%  Similarity=0.327  Sum_probs=72.0

Q ss_pred             cccccccCccceee--eccceeecCCCCC-CCcccCCccccCCC----eeeec--ceeeC-CcCCCCCCC----------
Q psy952          279 AWLTAHRGSTTVAD--MIRSVYLGSGNKE-NSTCSSSQFRCNNG----KCIDY--HLVCN-KESDCEDDS----------  338 (573)
Q Consensus       279 lCl~~~~~~~~~~C--Cp~~~~l~~d~~~-~~~C~~~~~~C~~g----~Ci~~--~~~cd-~~~~c~d~s----------  338 (573)
                      .|+...  ..+|+|  |+.||........ +.+|...+..|.++    .|+..  +|+|. +.++..-..          
T Consensus        16 ~C~n~~--~Gsy~C~~C~~GytGdg~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~   93 (634)
T 1yo8_A           16 QCSSFP--DGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAK   93 (634)
T ss_dssp             CEEECT--TSCEEECCCCTTBCSCSSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCEESSSHHHH
T ss_pred             EEecCC--CCCeECCcCCCccCCCCCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCccccccccccc
Confidence            566655  124999  9999974211112 78898877778654    69875  78997 555443211          


Q ss_pred             -CCCCCC-CCccccCCCCCccCC--ccccCC----CCccccCCCCceecCCCcccc--cccccCC
Q psy952          339 -DEPLHC-NVDECAKVETNQCGH--KCVDTL----TGYYCECNTGYKLLEDGKACT--DIDECIE  393 (573)
Q Consensus       339 -de~~~c-~~~~C~~~~~~~C~~--~C~~~~----~~~~C~C~~~f~c~~~~~c~~--~~~~C~~  393 (573)
                       +.. .| ++++|.. ....|.+  .|.+..    ++|.|.|+.+|. ..+..|-.  ++++|..
T Consensus        94 ~dg~-~C~dideC~~-~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~-GdG~~Ce~d~DiDeC~~  155 (634)
T 1yo8_A           94 TEKQ-VCEPENPCKD-KTHNCHKHAECIYLGHFSDPMYKCECQTGYA-GDGLICGEDSDLDGWPN  155 (634)
T ss_dssp             SCCC-CEEECCTTTT-TCCCCCTTEEEEECCTTCSSSEEEEECTTEE-ESSSSEEECTTSSSSCS
T ss_pred             cCCC-cccccccccC-CCcccccCccccccccccccceeeeccCCcc-ccCcccccccCcccccC
Confidence             112 34 3678876 5578976  899888    899999999997 33444543  5666643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.26  Score=56.19  Aligned_cols=201  Identities=10%  Similarity=0.024  Sum_probs=120.8

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-ee
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RK  123 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~  123 (573)
                      ..+..|+|++....|... ...+.|+.++..+......+ ..-..+..|++.+ ++.| ++-...+.|.+-++.... ..
T Consensus        18 ~~V~~lafspdg~~lAsg-s~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L-~S~s~D~~v~lWd~~~~~~~~   93 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIA-TVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYL-VVINAKDTVYVLSLYSQKVLT   93 (902)
T ss_dssp             SCEEEEEEETTTTEEEEE-ETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEE-EEEETTCEEEEEETTTCSEEE
T ss_pred             CCcEEEEECCCCCEEEEE-eCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEE-EEEECcCeEEEEECCCCcEEE
Confidence            457899999876655554 45678888887654332222 2234678899987 5434 444457889999987543 33


Q ss_pred             EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe---------cCCCCCCCceEEEeccCCeEEEEe
Q psy952          124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT---------HEDDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~---------~~~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      .+ ..-.....|+++|...+|+...  ..+.|...++.+.....+..         ..........|++.+.+..+..+-
T Consensus        94 ~~-~~~~~V~~v~~sp~g~~l~sgs--~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g  170 (902)
T 2oaj_A           94 TV-FVPGKITSIDTDASLDWMLIGL--QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLIS  170 (902)
T ss_dssp             EE-ECSSCEEEEECCTTCSEEEEEE--TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEE
T ss_pred             EE-cCCCCEEEEEECCCCCEEEEEc--CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEE
Confidence            33 2334578999999888887776  35677777776554321110         011223457899988665555565


Q ss_pred             CCCCeEEEEeCCCCcEEEEEeCC-----------------ccceeEEEeee-CCeEEEecCCCCceEEEeccCCcce
Q psy952          195 AHLDYIASVDLDGKHKHIVISGQ-----------------KVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDY  253 (573)
Q Consensus       195 ~~~~~I~~~~~dG~~~~~l~~~~-----------------~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~  253 (573)
                      ...+.| ..++........+...                 ......+|++. ++.++.+-...+.|..-+..+|+..
T Consensus       171 ~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~  246 (902)
T 2oaj_A          171 YEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI  246 (902)
T ss_dssp             CSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred             eCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence            667788 8887765443333211                 01235677774 3555666556667766665565543

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=96.50  E-value=0.0012  Score=51.91  Aligned_cols=75  Identities=27%  Similarity=0.626  Sum_probs=52.8

Q ss_pred             CCcccCCccccCCCeeeec--ceeeCCcCCCCCC-CCCCCCC-CCccccCCCCCccCC-ccccCCCCccccCCCCceecC
Q psy952          306 NSTCSSSQFRCNNGKCIDY--HLVCNKESDCEDD-SDEPLHC-NVDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLE  380 (573)
Q Consensus       306 ~~~C~~~~~~C~~g~Ci~~--~~~cd~~~~c~d~-sde~~~c-~~~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~~  380 (573)
                      +++|...+..|.++.|+..  +|.|...++...+ .+.. .| ++++|.. .+..|.+ .|.+..++|.|.|+.+|....
T Consensus         3 ideC~~~~~~C~~g~C~n~~g~y~C~C~~Gy~~~~~~g~-~C~dideC~~-~~~~C~~~~C~n~~g~y~C~C~~G~~~~~   80 (86)
T 1lmj_A            3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMK-NCMDIDECQR-DPLLCRGGVCHNTEGSYRCECPPGHQLSP   80 (86)
T ss_dssp             CCTTTTCSSTTTTSCEEEETTEEEECCCSSEEECTTTSS-SEEECCHHHH-CSSTTTTSEEEEETTEEEEESCTTSCCCS
T ss_pred             cccccCCCCCCCCCEEECCCCCEEeeCCCCcCccCCCCC-ccCCcccccC-CCCcCCCCEeEcCCCCEEEECcCCcccCC
Confidence            4567766666877788765  6888766555422 1223 44 5788876 5556776 899999999999999998765


Q ss_pred             CC
Q psy952          381 DG  382 (573)
Q Consensus       381 ~~  382 (573)
                      .+
T Consensus        81 ~~   82 (86)
T 1lmj_A           81 NI   82 (86)
T ss_dssp             SS
T ss_pred             CC
Confidence            44

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=96.49  E-value=0.0016  Score=45.46  Aligned_cols=39  Identities=26%  Similarity=0.688  Sum_probs=32.4

Q ss_pred             CCCccCCccccCCCCccccCCCCceecCCCccccccccc
Q psy952          353 ETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC  391 (573)
Q Consensus       353 ~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~C  391 (573)
                      .+..|.+.|.|..+++.|.|+.+|++..+++.|.++++|
T Consensus         4 ~ng~C~~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~   42 (51)
T 1kig_L            4 DNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             TTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             CCCCcCCEeEcCCCCeEEeCCCCcEECCCCCccccCCcc
Confidence            456788899999999999999999998877767666554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.47  E-value=0.97  Score=48.46  Aligned_cols=29  Identities=21%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             EEEEEcCCCEEEEEECC---------------CCeEEEEEcCCC
Q psy952           49 AMDFHYKENRFYFADVA---------------AKTIYRSRVGST   77 (573)
Q Consensus        49 ~v~~d~~~~~ly~~d~~---------------~~~I~~~~~~g~   77 (573)
                      .++||+..+.|||....               .+.|+.++++.+
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG  282 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG  282 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCC
Confidence            47899999999997632               135888887654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.44  E-value=0.41  Score=44.23  Aligned_cols=151  Identities=11%  Similarity=0.031  Sum_probs=89.6

Q ss_pred             EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC-------CceeEecc-CCCCcceEEEeCCCceEEEEecCCcC
Q psy952           82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG-------TNRKTLKT-AIQDPRGITLHPGIGYVYFSSWNLQA  153 (573)
Q Consensus        82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg-------~~~~~l~~-~~~~P~~Iavdp~~g~LYwtd~~~~~  153 (573)
                      +-..++.....||+++ ++.||..  ..+.+++.+...       ...+.|-. +...-..|.+|| +|.||...   ..
T Consensus        35 iG~~gw~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav~---dG  107 (236)
T 1tl2_A           35 IGKGGWSNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAVS---KD  107 (236)
T ss_dssp             EESSSCTTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEEE---TT
T ss_pred             cCccccccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEeC---CC
Confidence            3333577888999999 8899999  567899988743       11222322 333468999998 89999984   47


Q ss_pred             eEEEEec--cCCC-----cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CC------cEEEEEeCCcc
Q psy952          154 YIGKIGM--DGSN-----FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD-GK------HKHIVISGQKV  219 (573)
Q Consensus       154 ~I~r~~l--dG~~-----~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~------~~~~l~~~~~~  219 (573)
                      .|+|.+.  ++..     ..+|.  ...-..-..|.++ .++.||-+.  .+++++...- +.      ...++.....-
T Consensus       108 ~iyr~~pP~~~~~~Wl~~a~~vg--~~gw~~~~~lff~-p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~  182 (236)
T 1tl2_A          108 KLYKASPPQSDTDNWIARATEVG--SGGWSGFKFLFFH-PNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWD  182 (236)
T ss_dssp             EEEEESCCCSTTCCHHHHSEEEE--CSSGGGEEEEEEC-TTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGG
T ss_pred             EEEEeCCCcCCCCceeccccEec--cCCCCceEEEEEC-CCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcc
Confidence            8999876  3332     12333  2222233678888 478888887  5556554332 22      12333322211


Q ss_pred             ceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952          220 PHVFALTLFEDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       220 ~~p~~ia~~~~~lywtd~~~~~I~~~~  246 (573)
                      ..+.-+.-.++.||+..  .++|++..
T Consensus       183 ~yr~l~f~~~G~l~~v~--~g~~Y~~~  207 (236)
T 1tl2_A          183 TFKFLFFSSVGTLFGVQ--GGKFYEDY  207 (236)
T ss_dssp             GEEEEEECTTSCEEEEE--TTEEEEES
T ss_pred             eEEEEEECCCCcEEEEe--CCeEEecC
Confidence            12222222356677777  66777764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.46  Score=48.41  Aligned_cols=208  Identities=9%  Similarity=-0.035  Sum_probs=115.3

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC---Cc-c--eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS---TE-K--ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL  117 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g---~~-~--~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l  117 (573)
                      ...+.+|+|.+.++.++++-...+.|...++..   .. .  ..... ....+..|++.+.++ ++++-...+.|.+.++
T Consensus        63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~  140 (437)
T 3gre_A           63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYD-CSSTVTQITMIPNFD-AFAVSSKDGQIIVLKV  140 (437)
T ss_dssp             TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEE-CSSCEEEEEECTTSS-EEEEEETTSEEEEEEE
T ss_pred             CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeecc-CCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEe
Confidence            356889999984555666666778898888754   21 1  11222 235788899986444 4445455678888777


Q ss_pred             ----CCCceeEecc------------CCCCcceEE--EeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCC-CCCCC
Q psy952          118 ----DGTNRKTLKT------------AIQDPRGIT--LHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHED-DIAWP  178 (573)
Q Consensus       118 ----dg~~~~~l~~------------~~~~P~~Ia--vdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~-~l~~P  178 (573)
                          .|...+.+..            .......++  ..+...+|+...  ....|...++........+. .. .-...
T Consensus       141 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~-~~~h~~~v  217 (437)
T 3gre_A          141 NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT--NLSRVIIFDIRTLERLQIIE-NSPRHGAV  217 (437)
T ss_dssp             EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE--TTSEEEEEETTTCCEEEEEE-CCGGGCCE
T ss_pred             ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCeeeEEEc-cCCCCCce
Confidence                3433322210            111223333  234333444433  35677777776544333331 11 23456


Q ss_pred             ceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe-CCccceeEEEeee-----CCeEEEecCCCCceEEEeccCCcc
Q psy952          179 NALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS-GQKVPHVFALTLF-----EDHIYWTDWNTKSINRADKFNGRD  252 (573)
Q Consensus       179 ~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~-~~~~~~p~~ia~~-----~~~lywtd~~~~~I~~~~~~~g~~  252 (573)
                      ..|++++.+..|+.+ ...+.|...++.......... .. ......|++.     ++.++++-...+.|...+..+++.
T Consensus       218 ~~~~~s~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~  295 (437)
T 3gre_A          218 SSICIDEECCVLILG-TTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC  295 (437)
T ss_dssp             EEEEECTTSCEEEEE-ETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE
T ss_pred             EEEEECCCCCEEEEE-cCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE
Confidence            789998765555554 456778888876543322222 21 2234555332     244666666667787777767766


Q ss_pred             eEEEcc
Q psy952          253 YRVLRN  258 (573)
Q Consensus       253 ~~~l~~  258 (573)
                      ...+..
T Consensus       296 ~~~~~~  301 (437)
T 3gre_A          296 QYAFIN  301 (437)
T ss_dssp             EEEEES
T ss_pred             EEEEEc
Confidence            665544

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.39  E-value=0.66  Score=46.98  Aligned_cols=214  Identities=16%  Similarity=0.174  Sum_probs=116.9

Q ss_pred             ceEEEEEEcC--CCEEEEEECCCCeEEEEEcCCCcceEEEcC------------------CCCCcceeEEeec-CCcEEE
Q psy952           46 NVVAMDFHYK--ENRFYFADVAAKTIYRSRVGSTEKERVIRH------------------DSHGLEGLAVDWV-GRKLYW  104 (573)
Q Consensus        46 ~~~~v~~d~~--~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~------------------~~~~p~glavD~~-~~~LY~  104 (573)
                      .+.+|++++.  .+.||+.-. .+.|+|..-.|...+.+...                  .......|++|+. .+.||+
T Consensus       116 ~i~~l~~~~~~~~~~l~~g~~-~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v  194 (394)
T 3b7f_A          116 HVFWLTPGHASEPGTWYAGTS-PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI  194 (394)
T ss_dssp             EEEEEEECCTTSTTCEEEEEE-TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred             ceeEEEeCCCCCCCEEEEEec-CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence            4668899874  577877543 45788876555554443210                  0113457888874 467888


Q ss_pred             EeCCCCeEEEEEcCCCceeEeccCC-------------CCcceEEEeCCC-ceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952          105 LDRHSKQLDVAELDGTNRKTLKTAI-------------QDPRGITLHPGI-GYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus       105 td~~~~~I~~~~ldg~~~~~l~~~~-------------~~P~~Iavdp~~-g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      .... +.|++..-.|..-+.+...+             ..+..|+++|.+ +.||+..   ...|++..-.|..-+.+. 
T Consensus       195 g~~~-ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~---~~gl~~s~D~G~tW~~~~-  269 (394)
T 3b7f_A          195 GMSS-GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN---HCGIYRMDRREGVWKRIG-  269 (394)
T ss_dssp             EEET-BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE---TTEEEEEETTTTEEECGG-
T ss_pred             EECC-CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc---CCeEEEeCCCCCcceECC-
Confidence            7532 45777665565544433211             236789999963 6787765   345887765554332221 


Q ss_pred             cCCCCCC-----CceEEEecc-CCeEEEEeC------------CCCeEEEEeCCCCcEEEEEeCCcccee--------EE
Q psy952          171 HEDDIAW-----PNALTLDYF-TERLYWADA------------HLDYIASVDLDGKHKHIVISGQKVPHV--------FA  224 (573)
Q Consensus       171 ~~~~l~~-----P~glaiD~~-~~~LYw~D~------------~~~~I~~~~~dG~~~~~l~~~~~~~~p--------~~  224 (573)
                        ..+..     ...|++|+. .+.||++-.            ....|++..-.|..-+.+..+  ++.+        .+
T Consensus       270 --~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~g--lp~~~~~~~~~~~~  345 (394)
T 3b7f_A          270 --DAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRG--LPTDQAWLTVKRQA  345 (394)
T ss_dssp             --GGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBT--SCCSSCCCCCCTBS
T ss_pred             --CCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCC--CCCccccceEEEEE
Confidence              22221     235777763 567887631            123566644334433433322  2321        24


Q ss_pred             Eeee---CCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeeec
Q psy952          225 LTLF---EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP  271 (573)
Q Consensus       225 ia~~---~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~  271 (573)
                      |++.   .+.||+.- ..+.|++.. ..|...+.+...+.....|.+..|
T Consensus       346 ~~~~p~~~~~l~~g~-~~g~l~~S~-D~G~tW~~~~~~lp~~~~v~~~~~  393 (394)
T 3b7f_A          346 MTADAHAPVGVYFGT-TGGEIWASA-DEGEHWQCIASHLPHIYAVQSARP  393 (394)
T ss_dssp             EEECCSSSCCEEEEC-TTSCEEEES-STTSBCEEEECSCSCEEEEEEECC
T ss_pred             EEECCCCCCEEEEEe-CCCeEEEEC-CCCCCceEcccCCCCeeEEEEecC
Confidence            5553   24577753 345677653 567777777666655555554433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.32  E-value=0.62  Score=45.87  Aligned_cols=158  Identities=9%  Similarity=-0.005  Sum_probs=95.0

Q ss_pred             cceEEEEEEc--CCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952           45 LNVVAMDFHY--KENRFYFADVAAKTIYRSRVGSTEKERVIRHD-SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        45 ~~~~~v~~d~--~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~  121 (573)
                      ..+..|++++  .++ ++++-...+.|..+++.......+.... ...+..+++.+. +.++.+-...+.|.+.++....
T Consensus       126 ~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~  203 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPD  203 (343)
T ss_dssp             SCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTT
T ss_pred             CCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCC
Confidence            4588999987  444 4555556778999998765543333222 235788899874 4555665677899999987655


Q ss_pred             ee--Eecc-CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC---ceEEEeccCCeEEEEeC
Q psy952          122 RK--TLKT-AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP---NALTLDYFTERLYWADA  195 (573)
Q Consensus       122 ~~--~l~~-~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P---~glaiD~~~~~LYw~D~  195 (573)
                      ..  .+.. .......|+++|...+|..+. . . .|...++........+.....-..+   ..+++++.+..|..+..
T Consensus       204 ~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~-~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          204 QASSRFPVDEEAKIKEVKFADNGYWMVVEC-D-Q-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             SCCEECCCCTTSCEEEEEECTTSSEEEEEE-S-S-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET
T ss_pred             CCccEEeccCCCCEEEEEEeCCCCEEEEEe-C-C-eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC
Confidence            33  3333 456688999999666666555 2 2 6777776544321111000000012   24999987777777555


Q ss_pred             CCCeEEEEeCCC
Q psy952          196 HLDYIASVDLDG  207 (573)
Q Consensus       196 ~~~~I~~~~~dG  207 (573)
                      ..+.|...+++.
T Consensus       281 ~d~~i~v~~~~~  292 (343)
T 3lrv_A          281 ESNSLTIYKFDK  292 (343)
T ss_dssp             TTTEEEEEEECT
T ss_pred             CCCcEEEEEEcc
Confidence            466666666643

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.32  E-value=1.8  Score=48.24  Aligned_cols=224  Identities=10%  Similarity=0.102  Sum_probs=126.4

Q ss_pred             EEEEEec-ccEEEEEcCCCceeecc--cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-----C--C
Q psy952           18 WLIFSNK-YYVRNMSLDATQYSLVH--QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-----D--S   87 (573)
Q Consensus        18 ~l~~s~~-~~I~~i~l~g~~~~~~~--~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-----~--~   87 (573)
                      .|.++.. ..|++++.....+....  .....+..|..|. .+.||+..... .|++++..+...+.+...     .  .
T Consensus       185 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lwigt~~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~  262 (795)
T 4a2l_A          185 QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQS-PTRIWVATEGA-GLFLINPKTKEIKNYLHSPSNPKSISS  262 (795)
T ss_dssp             EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEE-TTEEEEEEBSS-CEEEEETTTTEEEEECCCTTCTTSCSC
T ss_pred             CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcC-CCCEEEEECCC-CeEEEeCCCCeEEEeecCCCCccccCC
Confidence            3444443 47888887665544331  1234467788884 67777765444 488888766544333221     1  1


Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc------CC--CCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT------AI--QDPRGITLHPGIGYVYFSSWNLQAYIGKIG  159 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~------~~--~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~  159 (573)
                      ..+..|+.|. .+.|++....  .|.+++........+..      .+  ...+.|..|+ .|.|++...  ...|.+.+
T Consensus       263 ~~i~~i~~d~-~g~lWigt~~--Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~-~g~lWigt~--~~Gl~~~~  336 (795)
T 4a2l_A          263 NYIRSLAMDS-QNRLWIGTFN--DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDS-QGGMWLGTY--FGGLNYYH  336 (795)
T ss_dssp             SBEEEEEECT-TSCEEEEESS--CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECT-TSCEEEEES--SSCEEEEC
T ss_pred             CeEEEEEEcC-CCCEEEEeCC--hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeC-CcCEEEEEC--CCCeEEeC
Confidence            3567788884 5677776543  57888876555444431      12  2377899998 677777653  34577777


Q ss_pred             ccCCCcEEEEecC--CCCC--CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC------C-ccceeEEEeee
Q psy952          160 MDGSNFTRILTHE--DDIA--WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG------Q-KVPHVFALTLF  228 (573)
Q Consensus       160 ldG~~~~~l~~~~--~~l~--~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~------~-~~~~p~~ia~~  228 (573)
                      ......+.+....  ..+.  ...+|+.| .++.||++.. .+.|.+++......+.+...      . ......+|+.+
T Consensus       337 ~~~~~~~~~~~~~~~~~l~~~~V~~i~~d-~~g~lWiGt~-~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d  414 (795)
T 4a2l_A          337 PIRNRFKNIRNIPYKNSLSDNVVSCIVED-KDKNLWIGTN-DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD  414 (795)
T ss_dssp             GGGGSSEEECCCTTSSSCSCSSEEEEEEC-TTSCEEEEES-SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred             CCcccceEEcCCCCCCCCCCCeeEEEEEC-CCCCEEEEEC-CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence            6554444433100  1121  23467777 4677887654 34577777765544433211      0 02345677775


Q ss_pred             -CCe-EEEecCCCCceEEEeccCCcc
Q psy952          229 -EDH-IYWTDWNTKSINRADKFNGRD  252 (573)
Q Consensus       229 -~~~-lywtd~~~~~I~~~~~~~g~~  252 (573)
                       ++. ||+.- ..+.|+++++.+++.
T Consensus       415 ~~g~~lWigt-~~~Gl~~~d~~~~~~  439 (795)
T 4a2l_A          415 EKKSLVYIGT-HAGGLSILHRNSGQV  439 (795)
T ss_dssp             TTTTEEEEEE-TTTEEEEEETTTCCE
T ss_pred             CCCCEEEEEe-CcCceeEEeCCCCcE
Confidence             456 55543 345688887666543

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=96.30  E-value=0.0062  Score=52.22  Aligned_cols=105  Identities=23%  Similarity=0.558  Sum_probs=65.0

Q ss_pred             cccc--cccccccCccceee-eccceeecCCCCCCCcccCCccccC-CCeeeec--ceeeCCcCCCCCCCCCCCCCC--C
Q psy952          275 TTRH--AWLTAHRGSTTVAD-MIRSVYLGSGNKENSTCSSSQFRCN-NGKCIDY--HLVCNKESDCEDDSDEPLHCN--V  346 (573)
Q Consensus       275 ~Cs~--lCl~~~~~~~~~~C-Cp~~~~l~~d~~~~~~C~~~~~~C~-~g~Ci~~--~~~cd~~~~c~d~sde~~~c~--~  346 (573)
                      .|.+  .|+...   .+|+| |+.+|....-...+.+|...  .|. ++.|+..  .|.|...++..    .. .|.  +
T Consensus        14 ~C~~~g~C~~~~---g~~~C~C~~Gy~G~~C~~~~~~C~~~--~C~~~~~C~~~~g~~~C~C~~G~~----G~-~C~~~~   83 (135)
T 2vj3_A           14 PCEHAGKCINTL---GSFECQCLQGYTGPRCEIDVNECVSN--PCQNDATCLDQIGEFQCICMPGYE----GV-HCEVNT   83 (135)
T ss_dssp             SSSTTCEEEECS---SSEEEECCTTEESTTSCEECCTTTTC--CCCSSCEEEECSSCEEEECCTTEE----SS-SSCEEC
T ss_pred             CCCCCCEeECCC---CCEEEECCCCCcCCcccccCccCCCC--CCCCCCEEeCCCCCceeeCCCCCc----CC-cceecC
Confidence            4544  566655   56999 99999754322225667653  354 4678865  67885444432    22 443  5


Q ss_pred             ccccCCCCCccCC--ccccCCCCccccCCCCceecCCCcccccccccCCCC
Q psy952          347 DECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQP  395 (573)
Q Consensus       347 ~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~C~~~~  395 (573)
                      ++|..   ..|.+  .|.+..+.+.|.|+.+|.   +..|-.++++|...+
T Consensus        84 ~~C~~---~~C~~~g~C~~~~g~~~C~C~~G~~---G~~C~~~i~~C~~~~  128 (135)
T 2vj3_A           84 DECAS---SPCLHNGRCLDKINEFQCECPTGFT---GHLCQVDLHHILDAQ  128 (135)
T ss_dssp             CTTTT---CCSTTTCEEEECSSCEEEECCTTEE---SSSSCEECC------
T ss_pred             CcccC---CCcCCCCEeECCCCCeEEECCCCCc---CCccCccCccccCCC
Confidence            67754   46776  799999999999999997   445656777776443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.25  E-value=1.8  Score=47.28  Aligned_cols=76  Identities=8%  Similarity=-0.040  Sum_probs=47.3

Q ss_pred             ceEEEeccCCeEEEEeC-----------------------------------CCCeEEEEeCCCCcEEE-EEeCCcccee
Q psy952          179 NALTLDYFTERLYWADA-----------------------------------HLDYIASVDLDGKHKHI-VISGQKVPHV  222 (573)
Q Consensus       179 ~glaiD~~~~~LYw~D~-----------------------------------~~~~I~~~~~dG~~~~~-l~~~~~~~~p  222 (573)
                      .++++|+..+.+|+...                                   ..+.|..+|+......- +.... ...-
T Consensus       384 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~  462 (668)
T 1kv9_A          384 HSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNG  462 (668)
T ss_dssp             SCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCC
T ss_pred             CcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcC
Confidence            35899999999998421                                   11567777765443322 22221 1112


Q ss_pred             EEEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          223 FALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       223 ~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      ..++..++.||+.+ ..+.|+.++..+|+..-.+
T Consensus       463 ~~~~t~gg~vf~g~-~dg~l~a~d~~tG~~l~~~  495 (668)
T 1kv9_A          463 GTLSTAGNLVFQGT-AAGQMHAYSADKGEALWQF  495 (668)
T ss_dssp             CEEEETTTEEEEEC-TTSEEEEEETTTCCEEEEE
T ss_pred             ceeEeCCCEEEEEC-CcccchhhhhhcChhheEe
Confidence            34556788888884 5688999998888766444

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.24  Score=55.12  Aligned_cols=200  Identities=7%  Similarity=-0.034  Sum_probs=114.2

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE--EEcCCCCCcceeEEeecC-CcEEEEeCCCCeEEEEEcCCCc
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER--VIRHDSHGLEGLAVDWVG-RKLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--i~~~~~~~p~glavD~~~-~~LY~td~~~~~I~~~~ldg~~  121 (573)
                      ..+..|+|++.++.|+.+ ...+.|..+++.+.....  .+......+..|++.+.. ++++++-...+.|.+.++.+..
T Consensus        10 ~~V~~l~~s~dg~~latg-~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~   88 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATC-SSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR   88 (753)
T ss_dssp             CCEEEECCCSSSCCEEEE-ETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred             ceeEEEEECCCCCeEEEE-ECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            457788898766655554 456778888876432222  233233567778876541 4555555567889999987654


Q ss_pred             ee---EeccCCCCcceEEEeCC--CceEEEEecCCcCeEEEEeccCCC--cEEEEecCCCCCCCceEEEecc--------
Q psy952          122 RK---TLKTAIQDPRGITLHPG--IGYVYFSSWNLQAYIGKIGMDGSN--FTRILTHEDDIAWPNALTLDYF--------  186 (573)
Q Consensus       122 ~~---~l~~~~~~P~~Iavdp~--~g~LYwtd~~~~~~I~r~~ldG~~--~~~l~~~~~~l~~P~glaiD~~--------  186 (573)
                      ..   .+.........|+++|.  ...|+...  ..+.|...++....  .....  .........+++.+.        
T Consensus        89 ~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~vwdl~~~~~~~~~~~--~~~~~~v~~l~~~p~~~~~~~~~  164 (753)
T 3jro_A           89 WSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEH  164 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCSSSCCCCEEE--ECCSSCEEEEEECCCC-------
T ss_pred             ccccccccCCCCCeEEEEECCCCCCCEEEEEe--CCCcEEEEEeecCCCcceeEe--ecCCCceEEEEecCccccccccc
Confidence            22   22234556889999996  44454444  35677777766542  22222  233334567777764        


Q ss_pred             ----CCeEEEEeCCCCeEEEEeCCCCc-E-EEEE--eCCccceeEEEeeeC----CeEEEecCCCCceEEEeccCC
Q psy952          187 ----TERLYWADAHLDYIASVDLDGKH-K-HIVI--SGQKVPHVFALTLFE----DHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       187 ----~~~LYw~D~~~~~I~~~~~dG~~-~-~~l~--~~~~~~~p~~ia~~~----~~lywtd~~~~~I~~~~~~~g  250 (573)
                          ++.++++-...+.|...++.... . ..+.  .+. .....+|++..    +.++++-...+.|...+..++
T Consensus       165 ~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             --CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             ccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence                24444454556777777665432 2 2221  121 23466777742    456666555666766665554

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=96.19  E-value=0.00095  Score=59.39  Aligned_cols=101  Identities=20%  Similarity=0.376  Sum_probs=60.5

Q ss_pred             ccccccccCccceee-eccceeecCCCCC---CCc--ccCCcccc---CCCeeeec------ceeeCCcCC---------
Q psy952          278 HAWLTAHRGSTTVAD-MIRSVYLGSGNKE---NST--CSSSQFRC---NNGKCIDY------HLVCNKESD---------  333 (573)
Q Consensus       278 ~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~---~~~--C~~~~~~C---~~g~Ci~~------~~~cd~~~~---------  333 (573)
                      +.|+..+   .+|+| |+.||.+..+++.   +.+  |......|   .++.|+..      .|.|....+         
T Consensus        15 ~~C~n~~---gsy~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~~~~~~C~~   91 (162)
T 1uzk_A           15 GNCVNTP---GSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGTPCEM   91 (162)
T ss_dssp             SEEEEET---TEEEEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHTTTCCEETTTTEE
T ss_pred             CEeECCC---CCEEEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCCCCCcCCCccc
Confidence            5777776   67999 9999998776665   333  65433222   23455542      344432221         


Q ss_pred             ------------CCC--C----CCCCCCC-CCccccCCCCCccCC-ccccCCCCccccCCCCceecCCCc
Q psy952          334 ------------CED--D----SDEPLHC-NVDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLEDGK  383 (573)
Q Consensus       334 ------------c~d--~----sde~~~c-~~~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~~~~~  383 (573)
                                  |..  +    .+.. .| ++++|.. .+..|.+ .|.|+.++|.|.|+.+|.....++
T Consensus        92 C~~~~~~~y~C~C~~g~G~~~~~~~~-~c~dideC~~-~~~~C~~g~C~n~~gsy~C~C~~Gy~g~~d~~  159 (162)
T 1uzk_A           92 CPAVNTSEYKILCPGGEGFRPNPITV-ILEDIDECQE-LPGLCQGGKCINTFGSFQCRCPTGYYLNEDTR  159 (162)
T ss_dssp             CCCTTSHHHHHHCTTCTTEEECTTTC-CEEECCHHHH-CGGGGBTSEEEECSSCEEEECCTTCCBCTTTC
T ss_pred             CCCCCCCCceeECCCCCCcccCCCCC-ccCccccccC-CCCCcCCCEeEcCCCCEEeeCCCCccCCCCCC
Confidence                        111  1    1111 22 5788876 4567887 899999999999999998876543

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=96.16  E-value=0.0017  Score=45.72  Aligned_cols=39  Identities=38%  Similarity=0.783  Sum_probs=33.1

Q ss_pred             CCCccCCccccCCC-CccccCCCCceecCCCccccccccc
Q psy952          353 ETNQCGHKCVDTLT-GYYCECNTGYKLLEDGKACTDIDEC  391 (573)
Q Consensus       353 ~~~~C~~~C~~~~~-~~~C~C~~~f~c~~~~~c~~~~~~C  391 (573)
                      .+..|.+.|.+..+ ++.|.|+.+|++..+++.|.++++|
T Consensus         5 ~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec   44 (53)
T 2bz6_L            5 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY   44 (53)
T ss_dssp             GGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSS
T ss_pred             CCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCCccc
Confidence            45678889999998 7999999999999887777777665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.11  E-value=1.3  Score=44.19  Aligned_cols=217  Identities=11%  Similarity=0.068  Sum_probs=114.5

Q ss_pred             CEEEEEe-cccEEEEEcCCCce--eeccc---------CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-ceEEE
Q psy952           17 PWLIFSN-KYYVRNMSLDATQY--SLVHQ---------DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-KERVI   83 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~--~~~~~---------~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~i~   83 (573)
                      ..|+++. ...|+.+++...+.  +....         .......++++  .++||+... .+.|+.++...+. .-..-
T Consensus        54 ~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~~-~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           54 NVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVS--GGHVYIGSE-KAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEE--TTEEEEEET-TSEEEEEETTTCCEEEEEE
T ss_pred             CEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEe--CCEEEEEcC-CCEEEEEECCCCCEEEEEe
Confidence            4566665 35788898864332  12111         11112344444  788888764 4678888876332 21121


Q ss_pred             cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc-CCCceeEecc--CC---CCcceEEEeCCCceEEEEecCCcCeEEE
Q psy952           84 RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL-DGTNRKTLKT--AI---QDPRGITLHPGIGYVYFSSWNLQAYIGK  157 (573)
Q Consensus        84 ~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l-dg~~~~~l~~--~~---~~P~~Iavdp~~g~LYwtd~~~~~~I~r  157 (573)
                      ... ......+++  .+.||+.. ..+.|..+++ +|..+-....  ..   ......+++  .+.||+..  ....|..
T Consensus       131 ~~~-~~~~~p~~~--~~~v~v~~-~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~--~~g~l~~  202 (376)
T 3q7m_A          131 VAG-EALSRPVVS--DGLVLIHT-SNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG--DNGRVSA  202 (376)
T ss_dssp             CSS-CCCSCCEEE--TTEEEEEC-TTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECC--TTTEEEE
T ss_pred             CCC-ceEcCCEEE--CCEEEEEc-CCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc--CCCEEEE
Confidence            111 111122333  56777764 4567888886 4544322211  10   011233444  46777754  2456777


Q ss_pred             Eecc-CCCcEEEEecCCC---------CC-CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEe
Q psy952          158 IGMD-GSNFTRILTHEDD---------IA-WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALT  226 (573)
Q Consensus       158 ~~ld-G~~~~~l~~~~~~---------l~-~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia  226 (573)
                      .++. |..+-...  ...         +. .....+++  +++||+.. ..+.|..++...........   ...+.+++
T Consensus       203 ~d~~tG~~~w~~~--~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~-~~g~l~~~d~~tG~~~w~~~---~~~~~~~~  274 (376)
T 3q7m_A          203 VLMEQGQMIWQQR--ISQATGSTEIDRLSDVDTTPVVV--NGVVFALA-YNGNLTALDLRSGQIMWKRE---LGSVNDFI  274 (376)
T ss_dssp             EETTTCCEEEEEE--CCC-----------CCCCCCEEE--TTEEEEEC-TTSCEEEEETTTCCEEEEEC---CCCEEEEE
T ss_pred             EECCCCcEEEEEe--cccCCCCcccccccccCCCcEEE--CCEEEEEe-cCcEEEEEECCCCcEEeecc---CCCCCCce
Confidence            7764 43322221  010         00 01122333  68888875 45678888885433322222   34566788


Q ss_pred             eeCCeEEEecCCCCceEEEeccCCcce
Q psy952          227 LFEDHIYWTDWNTKSINRADKFNGRDY  253 (573)
Q Consensus       227 ~~~~~lywtd~~~~~I~~~~~~~g~~~  253 (573)
                      +.++.||++.. .+.|+.++..+|+.+
T Consensus       275 ~~~~~l~~~~~-~g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          275 VDGNRIYLVDQ-NDRVMALTIDGGVTL  300 (376)
T ss_dssp             EETTEEEEEET-TCCEEEEETTTCCEE
T ss_pred             EECCEEEEEcC-CCeEEEEECCCCcEE
Confidence            88999999874 467999998888754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=96.10  E-value=1.1  Score=44.86  Aligned_cols=195  Identities=11%  Similarity=0.034  Sum_probs=112.8

Q ss_pred             eEEEEEEcCCCEEEEEEC-CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeE
Q psy952           47 VVAMDFHYKENRFYFADV-AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKT  124 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~-~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~  124 (573)
                      +..|+|.+.++.|.++.. ..+.|+..++........+... ..+.+|++.+.++.|..+.  .+.+.+.+.. +.....
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~~~~~  212 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-GEVKDLHFSTDGKVVAYIT--GSSLEVISTVTGSCIAR  212 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-SCCCEEEECTTSSEEEEEC--SSCEEEEETTTCCEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-CceEEEEEccCCceEEecc--ceeEEEEEeccCcceee
Confidence            668999988888877654 4578888898765443333333 5688999988666555543  3456666543 443322


Q ss_pred             ec--cCCCCcceEEEeCCCceEEEEecCCc--CeEEEEeccCCCcEEEE--ecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952          125 LK--TAIQDPRGITLHPGIGYVYFSSWNLQ--AYIGKIGMDGSNFTRIL--THEDDIAWPNALTLDYFTERLYWADAHLD  198 (573)
Q Consensus       125 l~--~~~~~P~~Iavdp~~g~LYwtd~~~~--~~I~r~~ldG~~~~~l~--~~~~~l~~P~glaiD~~~~~LYw~D~~~~  198 (573)
                      ..  ..-...+.|++.|...+|..+.....  ..|...++.......+.  ...........|++.+++..|..+ ...+
T Consensus       213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasg-s~D~  291 (365)
T 4h5i_A          213 KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLA-SNDN  291 (365)
T ss_dssp             ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEE-ETTS
T ss_pred             eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEE-cCCC
Confidence            22  22334788999996666655542221  23444444333222111  001233345688998766655554 3467


Q ss_pred             eEEEEeCCCCcE-EEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEe
Q psy952          199 YIASVDLDGKHK-HIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       199 ~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~  246 (573)
                      .|...++..... ..+..+. .....+|++. ++.++.|-...++|...+
T Consensus       292 ~V~iwd~~~~~~~~~~~~gH-~~~V~~v~fSpdg~~laS~S~D~tvrvw~  340 (365)
T 4h5i_A          292 SIALVKLKDLSMSKIFKQAH-SFAITEVTISPDSTYVASVSAANTIHIIK  340 (365)
T ss_dssp             CEEEEETTTTEEEEEETTSS-SSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             EEEEEECCCCcEEEEecCcc-cCCEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            788888764433 3333332 3456788884 556667766667776655

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=96.09  E-value=0.24  Score=49.64  Aligned_cols=182  Identities=7%  Similarity=-0.022  Sum_probs=100.7

Q ss_pred             EEEEEe---cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-EEEc-CCCCCcce
Q psy952           18 WLIFSN---KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-RVIR-HDSHGLEG   92 (573)
Q Consensus        18 ~l~~s~---~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~i~~-~~~~~p~g   92 (573)
                      +|+++.   ...|+..++........+.....+.+|+|.+.+..|..+.  .+.+.++....+... .... ..-..+..
T Consensus       147 ~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  224 (365)
T 4h5i_A          147 VAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT--GSSLEVISTVTGSCIARKTDFDKNWSLSK  224 (365)
T ss_dssp             CEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC--SSCEEEEETTTCCEEEEECCCCTTEEEEE
T ss_pred             EEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc--ceeEEEEEeccCcceeeeecCCCCCCEEE
Confidence            454544   3568888887655443334445688999998776665543  345666665433222 1111 12235678


Q ss_pred             eEEeecCCcEEEEeCCCC---eEEEEEcCCCceeE-----eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           93 LAVDWVGRKLYWLDRHSK---QLDVAELDGTNRKT-----LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~---~I~~~~ldg~~~~~-----l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      +++.+.+..|..+....+   .|...++.......     +.........|+++|...+|....  ....|...++....
T Consensus       225 v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs--~D~~V~iwd~~~~~  302 (365)
T 4h5i_A          225 INFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS--NDNSIALVKLKDLS  302 (365)
T ss_dssp             EEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE--TTSCEEEEETTTTE
T ss_pred             EEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc--CCCEEEEEECCCCc
Confidence            888886666665543221   34455554333222     223444578999999666555444  34567766665332


Q ss_pred             c-EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC
Q psy952          165 F-TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD  206 (573)
Q Consensus       165 ~-~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d  206 (573)
                      . ..+.  ..--....+|++.|++. +..+-+..+.|...++.
T Consensus       303 ~~~~~~--~gH~~~V~~v~fSpdg~-~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          303 MSKIFK--QAHSFAITEVTISPDST-YVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEEEET--TSSSSCEEEEEECTTSC-EEEEEETTSEEEEEECC
T ss_pred             EEEEec--CcccCCEEEEEECCCCC-EEEEEeCCCeEEEEEcC
Confidence            2 2222  12233457899987554 44454556666666653

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.02  E-value=2.1  Score=45.83  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=47.5

Q ss_pred             ceEEEeccCCeEEEEeC------------------------------------CCCeEEEEeCC-CCcEEEEEeCCccce
Q psy952          179 NALTLDYFTERLYWADA------------------------------------HLDYIASVDLD-GKHKHIVISGQKVPH  221 (573)
Q Consensus       179 ~glaiD~~~~~LYw~D~------------------------------------~~~~I~~~~~d-G~~~~~l~~~~~~~~  221 (573)
                      .++++|+..++||+...                                    ..+.|..+++. |..+-.+.... ...
T Consensus       389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~  467 (571)
T 2ad6_A          389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAW  467 (571)
T ss_dssp             CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCC
T ss_pred             CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-Ccc
Confidence            46899999999999742                                    23567777765 33333322221 111


Q ss_pred             eEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          222 VFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       222 p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      ...++..++.||+.. ..+.|+.++..+|+.+-.+.
T Consensus       468 ~~~~~t~gg~v~~g~-~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          468 GGTLYTKGGLVWYAT-LDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             SBCEEETTTEEEEEC-TTSEEEEEETTTCCEEEEEE
T ss_pred             ceeEEECCCEEEEEc-CCCeEEEEECCCCCEEEEEe
Confidence            112344578888864 46789999988888765443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=95.97  E-value=1.2  Score=42.62  Aligned_cols=248  Identities=8%  Similarity=-0.012  Sum_probs=131.8

Q ss_pred             ceeeCCCCCCEEEEEecccEEEEEcCCCceeecc---cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc
Q psy952            8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVH---QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR   84 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~---~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~   84 (573)
                      +|.+.+ +..+|.++..+.|+..++...+....+   .....+.+|+|.+.++.|. +-...+.|...++........+.
T Consensus        29 ~~l~WS-~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~-sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           29 NLVDWS-SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLA-VGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             BCEEEC-TTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEE-EEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEC-CCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEE-EEECCCcEEEeecCCceeEEEec
Confidence            555554 345777777888999998765443222   2234578999998665554 55567789888887654333332


Q ss_pred             CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce--eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952           85 HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR--KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG  162 (573)
Q Consensus        85 ~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~--~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG  162 (573)
                      ..  ...-.++.+... +..+-...+.+..........  ..+.........+++.+...+|+...  ....|...++..
T Consensus       107 ~h--~~~~~~~~~~~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~  181 (318)
T 4ggc_A          107 SH--SARVGSLSWNSY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG--NDNLVNVWPSAP  181 (318)
T ss_dssp             CC--SSCEEEEEEETT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEESSC
T ss_pred             Cc--cceEEEeecCCC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe--cCcceeEEECCC
Confidence            22  222334444344 444444556666666554332  22334455577788888655554443  244555555432


Q ss_pred             CC-c---EEEEecCCCCCCCceEEEeccCCeEEEE--eCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEE
Q psy952          163 SN-F---TRILTHEDDIAWPNALTLDYFTERLYWA--DAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYW  234 (573)
Q Consensus       163 ~~-~---~~l~~~~~~l~~P~glaiD~~~~~LYw~--D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lyw  234 (573)
                      .. .   ....  .........++..+....+.+.  ....+.|...+.............  .....+.+  .++.++.
T Consensus       182 ~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          182 GEGGWVPLQTF--TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH--SQVCSILWSPHYKELIS  257 (318)
T ss_dssp             BTTBSCCSEEE--CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS--SCEEEEEEETTTTEEEE
T ss_pred             Ccccccceeee--cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce--eeeeeeeecccccceEE
Confidence            11 1   1111  1222223456666656555443  234456776676655554443332  23344444  3455554


Q ss_pred             e-cCCCCceEEEeccCCcceEEEcccCCCceee
Q psy952          235 T-DWNTKSINRADKFNGRDYRVLRNTTHRPYDI  266 (573)
Q Consensus       235 t-d~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i  266 (573)
                      + -...+.|...+..+++....+.........|
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l  290 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL  290 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            4 3355677777777777666664433333333

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.96  E-value=0.55  Score=48.41  Aligned_cols=121  Identities=5%  Similarity=-0.080  Sum_probs=80.2

Q ss_pred             ceEEEEEEcCCCEEEE---EECCCCeEEEEEcCCC-----cc----eEE--EcCCCCCcceeEEeecCCcEEEEeCCCCe
Q psy952           46 NVVAMDFHYKENRFYF---ADVAAKTIYRSRVGST-----EK----ERV--IRHDSHGLEGLAVDWVGRKLYWLDRHSKQ  111 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~---~d~~~~~I~~~~~~g~-----~~----~~i--~~~~~~~p~glavD~~~~~LY~td~~~~~  111 (573)
                      .+..|+|++.++.|++   +-...+.|+.+++...     ..    ..+  +...-..+.+|++.+..++++.+-...+.
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            4889999998888887   4445678888886532     11    111  11113468889998876788887777889


Q ss_pred             EEEEEcCCCceeE-eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEE
Q psy952          112 LDVAELDGTNRKT-LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI  168 (573)
Q Consensus       112 I~~~~ldg~~~~~-l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l  168 (573)
                      |.+.++....... .......+..|+++|...+|+...  ..+.|...++.|.....+
T Consensus       174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs--~dg~v~iwd~~~~~~~~~  229 (434)
T 2oit_A          174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK--QNGTVVQYLPTLQEKKVI  229 (434)
T ss_dssp             EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE--TTSCEEEECTTCCEEEEE
T ss_pred             EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc--CCCcEEEEccCCcccccc
Confidence            9999987653221 222344689999999766666655  356788888875444333

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=95.90  E-value=0.0045  Score=48.60  Aligned_cols=73  Identities=29%  Similarity=0.714  Sum_probs=47.3

Q ss_pred             CCcccCCccccCCCeeeec--ceeeCCcCCCCCCCCCCCCC-CCccccCCCCCccCCccccCCCCccccCC--CCceecC
Q psy952          306 NSTCSSSQFRCNNGKCIDY--HLVCNKESDCEDDSDEPLHC-NVDECAKVETNQCGHKCVDTLTGYYCECN--TGYKLLE  380 (573)
Q Consensus       306 ~~~C~~~~~~C~~g~Ci~~--~~~cd~~~~c~d~sde~~~c-~~~~C~~~~~~~C~~~C~~~~~~~~C~C~--~~f~c~~  380 (573)
                      +++|...+..|.++.|+..  +|.|...++.....+.. .| ++++|..   ..|...|.+..++|.|.|+  .+|.|..
T Consensus         3 ideC~~~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~-~C~dideC~~---~~C~~~C~n~~g~y~C~C~g~~G~~~~~   78 (87)
T 1z6c_A            3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSK-SCEDIDECSE---NMCAQLCVNYPGGYTCYCDGKKGFKLAQ   78 (87)
T ss_dssp             SCSSSSSSSSBTTSSCCCBTTBCCCSSSTTCEEETTTT-EEECCCHHHH---SCCSSEECCCSSSCCEECCSSSCCBCCT
T ss_pred             cccccCCCCCCCCCEeECCCCCEEEECCCCceECCCCC-cCCCcCeeCC---CCCCCEEEccCCCEEEECCCCcCCcccC
Confidence            3456555545655667654  57776555554333333 34 4678854   5687899999999999994  7888765


Q ss_pred             CC
Q psy952          381 DG  382 (573)
Q Consensus       381 ~~  382 (573)
                      ..
T Consensus        79 ~~   80 (87)
T 1z6c_A           79 DQ   80 (87)
T ss_dssp             TS
T ss_pred             CC
Confidence            44

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=95.86  E-value=0.0094  Score=46.72  Aligned_cols=47  Identities=43%  Similarity=0.942  Sum_probs=35.6

Q ss_pred             CccccCCCCCccCC-ccccCCCCccccCCCCceecCCCcccccccccCC
Q psy952          346 VDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLEDGKACTDIDECIE  393 (573)
Q Consensus       346 ~~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~C~~  393 (573)
                      +++|.. .+..|.+ .|.+..++|.|.|+.+|+....++-+.++++|..
T Consensus         3 ideC~~-~~~~C~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~~   50 (87)
T 1z6c_A            3 VDECSL-KPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE   50 (87)
T ss_dssp             SCSSSS-SSSSBTTSSCCCBTTBCCCSSSTTCEEETTTTEEECCCHHHH
T ss_pred             cccccC-CCCCCCCCEeECCCCCEEEECCCCceECCCCCcCCCcCeeCC
Confidence            567765 4445744 8999999999999999998765555578888853

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.84  E-value=1.5  Score=42.81  Aligned_cols=223  Identities=10%  Similarity=0.041  Sum_probs=110.3

Q ss_pred             cccEEEEEcCCCcee---ec-cc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-------ceEEEcCCCCCcc
Q psy952           24 KYYVRNMSLDATQYS---LV-HQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-------KERVIRHDSHGLE   91 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~---~~-~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~i~~~~~~~p~   91 (573)
                      ...|+..++......   .+ .. ....+.+|+|.+..+.|. +-...+.|...++....       ....+......+.
T Consensus        33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~la-s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~  111 (330)
T 2hes_X           33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLA-AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK  111 (330)
T ss_dssp             SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEE-EEETTSCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred             CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEE-EEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence            467888888654322   22 11 234588999998665554 44456677777764311       1112222335678


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcC-CC-c---eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELD-GT-N---RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ld-g~-~---~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      .|++.+.++.| .+-...+.|.+.++. +. .   ..++.........|+++|...+|.-...  ...|..-++.....+
T Consensus       112 ~v~~sp~g~~l-as~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~--D~~i~iW~~~~~~~~  188 (330)
T 2hes_X          112 GVAWSNDGYYL-ATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY--DDTVRIWKDYDDDWE  188 (330)
T ss_dssp             EEEECTTSCEE-EEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET--TSCEEEEEEETTEEE
T ss_pred             EEEECCCCCEE-EEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC--CCeEEEEECCCCCee
Confidence            89998755444 454556789888884 21 1   1223344456789999996555544432  334444333322111


Q ss_pred             EEEecCCCCCCCceEEEeccC-CeEEEEeCCCCeEEEEeCCCC-----cE-EEEE--eCCccceeEEEeeeCCeEEEecC
Q psy952          167 RILTHEDDIAWPNALTLDYFT-ERLYWADAHLDYIASVDLDGK-----HK-HIVI--SGQKVPHVFALTLFEDHIYWTDW  237 (573)
Q Consensus       167 ~l~~~~~~l~~P~glaiD~~~-~~LYw~D~~~~~I~~~~~dG~-----~~-~~l~--~~~~~~~p~~ia~~~~~lywtd~  237 (573)
                      .+......-.....+++.+.. +.+..+-...+.|...++.+.     .. ..+.  ..........|++..+.++.+-.
T Consensus       189 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~  268 (330)
T 2hes_X          189 CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVG  268 (330)
T ss_dssp             EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEE
T ss_pred             EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEe
Confidence            111102222344677887653 233334344555555544321     11 1111  11112345666665444555544


Q ss_pred             CCCceEEEeccCC
Q psy952          238 NTKSINRADKFNG  250 (573)
Q Consensus       238 ~~~~I~~~~~~~g  250 (573)
                      ..+.|...+..++
T Consensus       269 ~dg~v~iw~~~~~  281 (330)
T 2hes_X          269 ADGVLAVYEEVDG  281 (330)
T ss_dssp             TTSCEEEEEEETT
T ss_pred             CCCEEEEEEcCCC
Confidence            5566655554444

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=95.84  E-value=1.2  Score=50.71  Aligned_cols=192  Identities=9%  Similarity=-0.044  Sum_probs=114.6

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH   85 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~   85 (573)
                      .+|.+......+|+.+. ...|+..+..+............+..|+|.+ ++.|+ +-...+.|...++........+..
T Consensus        20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~-S~s~D~~v~lWd~~~~~~~~~~~~   97 (902)
T 2oaj_A           20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLV-VINAKDTVYVLSLYSQKVLTTVFV   97 (902)
T ss_dssp             EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEE-EEETTCEEEEEETTTCSEEEEEEC
T ss_pred             cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEE-EEECcCeEEEEECCCCcEEEEEcC
Confidence            45555443334565554 4577777776654433333445688999998 55344 444667899999876443222222


Q ss_pred             CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEe------------ccCCCCcceEEEeCCCceEEEEecCCcC
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL------------KTAIQDPRGITLHPGIGYVYFSSWNLQA  153 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l------------~~~~~~P~~Iavdp~~g~LYwtd~~~~~  153 (573)
                      . ..+..+++++.++.|+... ..+.|.+.++.+.....+            .........|+++|..+.++.+-. ...
T Consensus        98 ~-~~V~~v~~sp~g~~l~sgs-~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~-~dg  174 (902)
T 2oaj_A           98 P-GKITSIDTDASLDWMLIGL-QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-EYV  174 (902)
T ss_dssp             S-SCEEEEECCTTCSEEEEEE-TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC-SSC
T ss_pred             C-CCEEEEEECCCCCEEEEEc-CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe-CCC
Confidence            2 4688899998777777765 467899999886553211            112345789999996544444432 345


Q ss_pred             eEEEEeccCCCcEEEEecCCC------------------CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952          154 YIGKIGMDGSNFTRILTHEDD------------------IAWPNALTLDYFTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       154 ~I~r~~ldG~~~~~l~~~~~~------------------l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      .| ..++........+  ...                  -.....+++.+.+. ++.+-...+.|...++..
T Consensus       175 ~v-lWd~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~-~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          175 TL-TYSLVENEIKQSF--IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL-HIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             EE-EEETTTTEEEEEE--CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS-EEEEEETTCCEEEEETTT
T ss_pred             cE-EEECCCCceEEEE--ecccCCcCCCcccccccccccCCCeEEEEEcCCCC-EEEEEECCCeEEEEECCC
Confidence            66 6666544332222  111                  12346788887644 444545567777777754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.80  E-value=1.7  Score=43.17  Aligned_cols=219  Identities=10%  Similarity=0.046  Sum_probs=111.4

Q ss_pred             EEEEEe-cccEEEEEcCCCcee--ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cceEEEcCC----CCC
Q psy952           18 WLIFSN-KYYVRNMSLDATQYS--LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EKERVIRHD----SHG   89 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~~~--~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~i~~~~----~~~   89 (573)
                      .|+++. ...|+.+++...+..  ....... .....++  ++.||+.. ..+.|+.+++..+ ..-......    +..
T Consensus       105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~-~~~p~~~--~~~v~v~~-~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          105 HVYIGSEKAQVYALNTSDGTVAWQTKVAGEA-LSRPVVS--DGLVLIHT-SNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECSSCC-CSCCEEE--TTEEEEEC-TTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             EEEEEcCCCEEEEEECCCCCEEEEEeCCCce-EcCCEEE--CCEEEEEc-CCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            455554 457888887633321  1111100 1111222  45666543 3456777776432 221111110    001


Q ss_pred             cceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEeccC----------CC-CcceEEEeCCCceEEEEecCCcCeEEE
Q psy952           90 LEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLKTA----------IQ-DPRGITLHPGIGYVYFSSWNLQAYIGK  157 (573)
Q Consensus        90 p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~~~----------~~-~P~~Iavdp~~g~LYwtd~~~~~~I~r  157 (573)
                      ....+++  .+.||+.. ..+.|..+++. |..+-.....          +. .....+++  .+.||+...  ...|..
T Consensus       181 ~~~~~~~--~~~v~~g~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~~--~g~l~~  253 (376)
T 3q7m_A          181 ESAPTTA--FGAAVVGG-DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFALAY--NGNLTA  253 (376)
T ss_dssp             CCCCEEE--TTEEEECC-TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TTEEEEECT--TSCEEE
T ss_pred             CCCcEEE--CCEEEEEc-CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CCEEEEEec--CcEEEE
Confidence            1233443  56777753 35678888874 4433222110          00 00111233  578888763  457888


Q ss_pred             EeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecC
Q psy952          158 IGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW  237 (573)
Q Consensus       158 ~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~  237 (573)
                      +++......-..    .+..+.+++++  +++||++.. .+.|..++....................+++.++.||+.+.
T Consensus       254 ~d~~tG~~~w~~----~~~~~~~~~~~--~~~l~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~  326 (376)
T 3q7m_A          254 LDLRSGQIMWKR----ELGSVNDFIVD--GNRIYLVDQ-NDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDS  326 (376)
T ss_dssp             EETTTCCEEEEE----CCCCEEEEEEE--TTEEEEEET-TCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECT
T ss_pred             EECCCCcEEeec----cCCCCCCceEE--CCEEEEEcC-CCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeC
Confidence            877433222222    23345567766  899999875 56788888764443322221101223345567899998874


Q ss_pred             CCCceEEEeccCCcceEE
Q psy952          238 NTKSINRADKFNGRDYRV  255 (573)
Q Consensus       238 ~~~~I~~~~~~~g~~~~~  255 (573)
                       .+.|+.++..+|+.+..
T Consensus       327 -~g~l~~~d~~tG~~~~~  343 (376)
T 3q7m_A          327 -EGYLHWINVEDGRFVAQ  343 (376)
T ss_dssp             -TSEEEEEETTTCCEEEE
T ss_pred             -CCeEEEEECCCCcEEEE
Confidence             46799999888875543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=95.76  E-value=1.6  Score=42.50  Aligned_cols=202  Identities=11%  Similarity=-0.000  Sum_probs=107.4

Q ss_pred             CEEEEEe-cccEEEEEcCCCceeecccCCcceEEEEE--EcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952           17 PWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVAMDF--HYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL   93 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~--d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl   93 (573)
                      .+|+.+. .+.|+..++..............+..|+|  .+ ++.++++-...+.|+.+++........+...   ...+
T Consensus        99 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~  174 (368)
T 3mmy_A           99 SKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP---ERCY  174 (368)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECS---SCEE
T ss_pred             CEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecC---CCce
Confidence            3555444 46788888877655444445566889999  54 5555666666788999998765433333322   2345


Q ss_pred             EEeecCCcEEEEeCCCCeEEEEEcCCCceeEec--c-CCCCcceEEEeCCCce----EEEEecCCcCeEEEEeccCCC--
Q psy952           94 AVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--T-AIQDPRGITLHPGIGY----VYFSSWNLQAYIGKIGMDGSN--  164 (573)
Q Consensus        94 avD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~-~~~~P~~Iavdp~~g~----LYwtd~~~~~~I~r~~ldG~~--  164 (573)
                      ++++....++.+.. .+.|.+.++.........  . .......+++.+....    |+...  ....|...+++...  
T Consensus       175 ~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~  251 (368)
T 3mmy_A          175 CADVIYPMAVVATA-ERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPA  251 (368)
T ss_dssp             EEEEETTEEEEEEG-GGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHH
T ss_pred             EEEecCCeeEEEeC-CCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCcc
Confidence            56666666666653 457778887654432221  1 1112233333322111    22222  23445555444331  


Q ss_pred             --cEEEEecCCC----------CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee
Q psy952          165 --FTRILTHEDD----------IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF  228 (573)
Q Consensus       165 --~~~l~~~~~~----------l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~  228 (573)
                        ...+.. ...          ......|++.+.+..|+.+. ..+.|...++........+... ......|++.
T Consensus       252 ~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s  324 (368)
T 3mmy_A          252 KDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG-SDGRFSFWDKDARTKLKTSEQL-DQPISACCFN  324 (368)
T ss_dssp             HHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEE-TTSCEEEEETTTTEEEEECCCC-SSCEEEEEEC
T ss_pred             ccceeeee-eecccccccccccccceEEEEEecCCCEEEEEc-cCCeEEEEECCCCcEEEEecCC-CCCceEEEEC
Confidence              112220 000          01357889988766666554 5677888888755443333322 2345677763

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=95.75  E-value=3.2  Score=45.94  Aligned_cols=224  Identities=8%  Similarity=0.032  Sum_probs=121.5

Q ss_pred             CceeeCCCCCCEEEEEecccEEEEEcCCCceeecc--c--CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE
Q psy952            7 STCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVH--Q--DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV   82 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~--~--~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i   82 (573)
                      .+|... ..+.+|-++....|.|++  |..+....  .  ....+..|..|. .+.||+...  ..|++++.........
T Consensus        24 V~~I~q-D~~G~lWigT~~GL~ryD--G~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWigT~--~Gl~~yd~~~~~f~~~   97 (758)
T 3ott_A           24 VSCFLQ-DSEGLIWIGSNKGLFSYD--GYSTQQHFTYGENNNTRIYCGVIID-NTYLYMGTD--NGILVYNYRADRYEQP   97 (758)
T ss_dssp             EEEEEE-CTTSCEEEEESSCEEEEC--SSCEEECSCTTSTTSSCEEEEEEET-TTEEEEEET--TEEEEEETTTTEECCC
T ss_pred             EEEEEE-CCCCCEEEEECCCccccC--CCceEEEEccCCCCCceEEEEEEcC-CCcEEEEeC--CCeEEEeCCCCEEECc
Confidence            345544 367888888888888875  33322111  1  123467787784 688888753  3588888754322110


Q ss_pred             EcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec---cCC--CCcceEEEeCCCceEEEEecCCcCeEEE
Q psy952           83 IRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK---TAI--QDPRGITLHPGIGYVYFSSWNLQAYIGK  157 (573)
Q Consensus        83 ~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~---~~~--~~P~~Iavdp~~g~LYwtd~~~~~~I~r  157 (573)
                      .......+..|+.  ..++||++...  .|.+++......+.+.   ..+  .....|+.|. .|.||+...   ..|.+
T Consensus        98 ~~~~~~~i~~i~~--~~g~lWigt~~--Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWigt~---~Gl~~  169 (758)
T 3ott_A           98 ETDFPTDVRTMAL--QGDTLWLGALN--GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTK-DNQIYVGTY---NGLCR  169 (758)
T ss_dssp             SCCCCSCEEEEEE--ETTEEEEEETT--EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECT-TCCEEEEET---TEEEE
T ss_pred             ccCCCceEEEEEe--cCCcEEEEcCC--cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcC-CCCEEEEeC---CCHhh
Confidence            0001122344443  36778877543  6888887654444441   122  2356788887 677877652   35777


Q ss_pred             EeccCCCcEEEEecCCC--CC--CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeE
Q psy952          158 IGMDGSNFTRILTHEDD--IA--WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHI  232 (573)
Q Consensus       158 ~~ldG~~~~~l~~~~~~--l~--~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~l  232 (573)
                      .+......+.+.. ...  +.  ....|..|..++.||++..  +.|.+++......+.+..-. ......|..+ ++.|
T Consensus       170 ~~~~~~~~~~~~~-~~~~~~~~~~i~~i~~d~~~~~lWigt~--~Gl~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~l  245 (758)
T 3ott_A          170 YIPSNGKFEGIPL-PVHSSQSNLFVNSLLEDTTRQCVWIGTE--GYLFQYFPSTGQIKQTEAFH-NNSIKSLALDGNGDL  245 (758)
T ss_dssp             EETTTTEEEEECC-CCCTTCSSCCEEEEEEETTTTEEEEEEE--EEEEEEETTTTEEEEEEEEE-EEEEEEEEECTTCCE
T ss_pred             CccCCCceEEecC-CCccccccceeEEEEEECCCCEEEEEEC--CCCeEEcCCCCeEEeccCCC-CCeEEEEEEcCCCCE
Confidence            7765443332220 111  11  1346777755566777652  46788887654433322110 1234566665 4556


Q ss_pred             EEecCCCCceEEEeccCC
Q psy952          233 YWTDWNTKSINRADKFNG  250 (573)
Q Consensus       233 ywtd~~~~~I~~~~~~~g  250 (573)
                      ++.- . +.|+++++.++
T Consensus       246 WigT-~-~Gl~~~~~~~~  261 (758)
T 3ott_A          246 LAGT-D-NGLYVYHNDTT  261 (758)
T ss_dssp             EEEE-T-TEEEEECCTTS
T ss_pred             EEEe-C-CceeEEecCCC
Confidence            6554 2 45777765444

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=95.74  E-value=0.0044  Score=70.54  Aligned_cols=30  Identities=47%  Similarity=1.051  Sum_probs=29.0

Q ss_pred             ceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          415 EFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       415 ~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      .|+|.+|+||+..|+|||.+||+|+|||.+
T Consensus       122 ~F~C~~g~ci~~~~~c~g~~dC~d~sde~~  151 (913)
T 3t5o_A          122 KFRCDSGRCIARKLECNGENDCGDNSDERD  151 (913)
T ss_dssp             EEECTTSCEEEGGGSSSSSCCSSSSGGGTT
T ss_pred             ccccCCCceEccceecCCcccCCCcccccc
Confidence            799999999999999999999999999976

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=95.68  E-value=0.04  Score=59.29  Aligned_cols=105  Identities=24%  Similarity=0.588  Sum_probs=64.8

Q ss_pred             CcccCCccccC-CCeeeec---ceee-CCcCCCCCCCCCCCCC-CCccccCCCCCccCC-----ccccCCCCcccc-CCC
Q psy952          307 STCSSSQFRCN-NGKCIDY---HLVC-NKESDCEDDSDEPLHC-NVDECAKVETNQCGH-----KCVDTLTGYYCE-CNT  374 (573)
Q Consensus       307 ~~C~~~~~~C~-~g~Ci~~---~~~c-d~~~~c~d~sde~~~c-~~~~C~~~~~~~C~~-----~C~~~~~~~~C~-C~~  374 (573)
                      .+|...  .|. ++.|+..   +|+| .+.++..-  +.. .| ++++|.. .+..|.+     .|.+..++|.|. |+.
T Consensus         4 DeC~~n--PC~~gg~C~n~~~Gsy~C~~C~~GytG--dg~-~CeDiDEC~~-~p~~C~~gg~~~~CvNt~gsY~C~~C~~   77 (634)
T 1yo8_A            4 DGCLSN--PCFPGAQCSSFPDGSWSCGFCPVGFLG--NGT-HCEDLDECAL-VPDICFSTSKVPRCVNTQPGFHCLPCPP   77 (634)
T ss_dssp             CGGGGC--CSCTTCCEEECTTSCEEECCCCTTBCS--CSS-SCCBCCTTTT-SCCCSCCCSSSCCEEECSSSEEECCCCT
T ss_pred             cccCCC--CCCCCCEEecCCCCCeECCcCCCccCC--CCC-CccccccccC-CCCcccCCccccceeeccCceecccCCC
Confidence            466533  364 4679875   3889 66665541  223 45 4788976 5556877     599999999998 999


Q ss_pred             CceecC-----------CCcccccccccCCCCCCCCCCCCCCCCCCCC-CCCceecC
Q psy952          375 GYKLLE-----------DGKACTDIDECIEQPGVCSQYPAMCHNRPCD-KDTEFACR  419 (573)
Q Consensus       375 ~f~c~~-----------~~~c~~~~~~C~~~~~~~~~~~~~C~~~~C~-~~~~f~C~  419 (573)
                      +|.-..           .++-|.++.+|...+..|.. ...|.+..-. .+ .|+|.
T Consensus        78 Gy~G~~c~g~g~~~~~~dg~~C~dideC~~~~~pC~~-~~~Cvnt~~~~~G-sY~C~  132 (634)
T 1yo8_A           78 RYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHK-HAECIYLGHFSDP-MYKCE  132 (634)
T ss_dssp             TEEECCCEESSSHHHHSCCCCEEECCTTTTTCCCCCT-TEEEEECCTTCSS-SEEEE
T ss_pred             CcccCccccccccccccCCCcccccccccCCCccccc-Ccccccccccccc-ceeee
Confidence            997432           22345678889765444432 2345543200 13 57764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=95.65  E-value=2.6  Score=46.19  Aligned_cols=55  Identities=13%  Similarity=0.087  Sum_probs=28.9

Q ss_pred             ceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCC-ccceeEEEeeeCCeEEEe
Q psy952          179 NALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQ-KVPHVFALTLFEDHIYWT  235 (573)
Q Consensus       179 ~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~-~~~~p~~ia~~~~~lywt  235 (573)
                      .+.++...++.||+. ...+.|..++.. |.....+.... ....|.... .++++|++
T Consensus       480 ~~g~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~-~~G~~~v~  536 (677)
T 1kb0_A          480 NGGTLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYM-VDGRQYVS  536 (677)
T ss_dssp             CCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETTEEEEE
T ss_pred             cCcceEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeCCCCcccCCEEEE-eCCEEEEE
Confidence            344455557788877 456788888865 44444333221 123343332 45565554

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=95.61  E-value=0.0046  Score=50.62  Aligned_cols=48  Identities=35%  Similarity=0.843  Sum_probs=34.8

Q ss_pred             CCCCccccCCCCCccCCccccCCCCccccCCCCceecCCCcccccccccC
Q psy952          343 HCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECI  392 (573)
Q Consensus       343 ~c~~~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~C~  392 (573)
                      .|++++|.. .+..|...|.+..++|.|.|+.+|....+. -|.++++|.
T Consensus        26 ~Cd~neC~~-~~~~C~~~C~n~~g~y~C~C~~Gy~g~~g~-~C~dideC~   73 (107)
T 2w2n_E           26 AMGTNECLD-NNGGCSYVCNDLKIGYECLCPDGFQLVAQR-RCEDIDECQ   73 (107)
T ss_dssp             CBSCCGGGT-GGGGCSSEEECCSBSCEEECCTTCEEETTT-EEEC-----
T ss_pred             CCcCccCcC-CCCCCCCEeEeCCCCeEEECCCCccccCCC-ccccccccC
Confidence            577888976 556788899999999999999999986555 445889996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.59  E-value=2  Score=42.30  Aligned_cols=195  Identities=9%  Similarity=-0.019  Sum_probs=106.7

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc--eEEE-cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK--ERVI-RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR  122 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~i~-~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~  122 (573)
                      .+..|+|.+.+..| .+-...+.|...++.+...  ..++ ......+..|++.+.++.|+.+ ...+.|.+.+++....
T Consensus        18 ~v~~l~~sp~g~~l-as~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~-s~D~~v~iw~~~~~~~   95 (345)
T 3fm0_A           18 RCWFLAWNPAGTLL-ASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA-SFDATTCIWKKNQDDF   95 (345)
T ss_dssp             CEEEEEECTTSSCE-EEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEE-ETTSCEEEEEECCC-E
T ss_pred             cEEEEEECCCCCEE-EEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEE-ECCCcEEEEEccCCCe
Confidence            57789999865554 4445567788777765432  1222 2223567889998766555444 4566777777665432


Q ss_pred             ---eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE-EEecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952          123 ---KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR-ILTHEDDIAWPNALTLDYFTERLYWADAHLD  198 (573)
Q Consensus       123 ---~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~-l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~  198 (573)
                         .++.........|++.|...+|.-..  ....|...+++...... +............+++.+.+..|..+. ..+
T Consensus        96 ~~~~~~~~h~~~v~~v~~sp~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s-~d~  172 (345)
T 3fm0_A           96 ECVTTLEGHENEVKSVAWAPSGNLLATCS--RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASAS-YDD  172 (345)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEE-TTS
T ss_pred             EEEEEccCCCCCceEEEEeCCCCEEEEEE--CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEe-CCC
Confidence               22333445678999999655555444  24556655555433221 110022233446788887666555443 455


Q ss_pred             eEEEEeCCCCcEEEE--EeCCccceeEEEeee-CCeEEEecCCCCceEEEe
Q psy952          199 YIASVDLDGKHKHIV--ISGQKVPHVFALTLF-EDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       199 ~I~~~~~dG~~~~~l--~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~  246 (573)
                      .|...+........+  +.+. .....+|++. .+.++.+-...+.|..-+
T Consensus       173 ~i~~w~~~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          173 TVKLYREEEDDWVCCATLEGH-ESTVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             CEEEEEEETTEEEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cEEEEEecCCCEEEEEEecCC-CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            666666554432221  2222 3456777774 344445544455554433

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.58  E-value=1.7  Score=41.60  Aligned_cols=198  Identities=7%  Similarity=-0.031  Sum_probs=106.1

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc--ceEEEcCCCCCcceeEEeec-CCcEEEEeCCCCeEEEEEcCCCc
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE--KERVIRHDSHGLEGLAVDWV-GRKLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~i~~~~~~~p~glavD~~-~~~LY~td~~~~~I~~~~ldg~~  121 (573)
                      ..+..++|++..+.|. +-...+.|+..++.+..  ....+...-..+..|++.+. .++++.+-+..+.|.+-++....
T Consensus        10 ~~V~~~~~s~~g~~la-s~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~   88 (297)
T 2pm7_B           10 EMIHDAVMDYYGKRMA-TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR   88 (297)
T ss_dssp             SCEEEEEECTTSSEEE-EEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC
T ss_pred             CceEEEEECCCCCEEE-EEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc
Confidence            4577899997655554 44566778888886532  22223322345677777532 35666666677889988887542


Q ss_pred             ---eeEeccCCCCcceEEEeCCC-ceEEEEecCCcCeEEEEeccCCC--cEEEEecCCCCCCCceEEEeccC--------
Q psy952          122 ---RKTLKTAIQDPRGITLHPGI-GYVYFSSWNLQAYIGKIGMDGSN--FTRILTHEDDIAWPNALTLDYFT--------  187 (573)
Q Consensus       122 ---~~~l~~~~~~P~~Iavdp~~-g~LYwtd~~~~~~I~r~~ldG~~--~~~l~~~~~~l~~P~glaiD~~~--------  187 (573)
                         ..++.........|++.|.. +.++.+-. ....|...++....  ....+  ...-.....+++.+..        
T Consensus        89 ~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s-~d~~v~~wd~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~  165 (297)
T 2pm7_B           89 WSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS-SDGKVSVVEFKENGTTSPIII--DAHAIGVNSASWAPATIEEDGEHN  165 (297)
T ss_dssp             BCCCEEECCCSSCEEEEEECCGGGCSEEEEEE-TTSEEEEEEBCSSSCBCCEEE--ECCSSCEEEEEECCCC--------
T ss_pred             eEEEEEeecCCCceeEEEeCcCCCCcEEEEEE-CCCcEEEEEecCCCceeeeee--ecccCccceEeecCCcccccccCC
Confidence               12222334457889999852 44444432 34566666654321  11222  1222233566666532        


Q ss_pred             ----CeEEEEeCCCCeEEEEeCCCCc-EE-E--EEeCCccceeEEEeeeC----CeEEEecCCCCceEEEec
Q psy952          188 ----ERLYWADAHLDYIASVDLDGKH-KH-I--VISGQKVPHVFALTLFE----DHIYWTDWNTKSINRADK  247 (573)
Q Consensus       188 ----~~LYw~D~~~~~I~~~~~dG~~-~~-~--l~~~~~~~~p~~ia~~~----~~lywtd~~~~~I~~~~~  247 (573)
                          ++++++-...+.|...++.... .. .  .+.+. .....+|++..    +.++.+-...+.|..-+.
T Consensus       166 ~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H-~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~  236 (297)
T 2pm7_B          166 GTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ  236 (297)
T ss_dssp             ----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             CCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-CCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence                3455555556666666665432 11 1  12221 23456777743    255556555566655443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=95.52  E-value=1.4  Score=45.30  Aligned_cols=162  Identities=8%  Similarity=-0.092  Sum_probs=92.4

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK  123 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~  123 (573)
                      ...+.+|+|++..+.++.+-...+.|+.+++............-..+..|++.+.++.|+... ..+.|.+.++.+....
T Consensus       149 ~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs-~dg~v~iwd~~~~~~~  227 (434)
T 2oit_A          149 GGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK-QNGTVVQYLPTLQEKK  227 (434)
T ss_dssp             GGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE-TTSCEEEECTTCCEEE
T ss_pred             CCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc-CCCcEEEEccCCcccc
Confidence            345889999998677777777788899999876532211211224688899988766676665 5678999999865555


Q ss_pred             EeccCC--C-----CcceEEEeCCCceEEEEecCC-----cCeEEEEeccCCC---cEEEEecCCC------CCCCceEE
Q psy952          124 TLKTAI--Q-----DPRGITLHPGIGYVYFSSWNL-----QAYIGKIGMDGSN---FTRILTHEDD------IAWPNALT  182 (573)
Q Consensus       124 ~l~~~~--~-----~P~~Iavdp~~g~LYwtd~~~-----~~~I~r~~ldG~~---~~~l~~~~~~------l~~P~gla  182 (573)
                      .+....  .     ...+|+.++...+|.....+.     ...+....+....   ...+.. ...      ..++..+.
T Consensus       228 ~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~-~~~~~~~~~~~r~~~~~  306 (434)
T 2oit_A          228 VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVN-FMEPCYGSCTERQHHYY  306 (434)
T ss_dssp             EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEE-CCCSSCCCCSSSCCCEE
T ss_pred             cccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEe-cccCCCCCCCCcCccee
Confidence            443211  1     345666665333332222121     1234444444221   122221 111      22333444


Q ss_pred             Ee--ccCCeEEEEeCCCCeEEEEeCCC
Q psy952          183 LD--YFTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       183 iD--~~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      +.  ++-+.||++.+....|..+..++
T Consensus       307 ~~~l~dw~l~~v~s~~s~dv~vl~~~~  333 (434)
T 2oit_A          307 LSYIEEWDLVLAASAASTEVSILARQS  333 (434)
T ss_dssp             EEEEGGGTEEEEEETTCSBCEEEEECT
T ss_pred             eehhccCCEEEEecCCCCceeEEEecC
Confidence            44  45688888888777666665543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=95.51  E-value=2.1  Score=42.09  Aligned_cols=179  Identities=15%  Similarity=0.098  Sum_probs=100.2

Q ss_pred             EEEEEe-cccEEEEEcCCCcee---eccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE--EEcCCCCCc
Q psy952           18 WLIFSN-KYYVRNMSLDATQYS---LVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER--VIRHDSHGL   90 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~~~---~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--i~~~~~~~p   90 (573)
                      +|+.+. ...|+..++.+....   .+.. ....+..|+|.+.++.|+.+. ..+.|...+++....+.  .+......+
T Consensus        30 ~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~h~~~v  108 (345)
T 3fm0_A           30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS-FDATTCIWKKNQDDFECVTTLEGHENEV  108 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE-TTSCEEEEEECCC-EEEEEEECCCSSCE
T ss_pred             EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE-CCCcEEEEEccCCCeEEEEEccCCCCCc
Confidence            444333 467888887665321   1212 334588999998766665554 45566666665543222  233333567


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCce----eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR----KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~----~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      ..|++.+.++ ++++-...+.|.+.++.....    .++.........|+++|...+|.....  ...|...++......
T Consensus       109 ~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~--d~~i~~w~~~~~~~~  185 (345)
T 3fm0_A          109 KSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASY--DDTVKLYREEEDDWV  185 (345)
T ss_dssp             EEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEET--TSCEEEEEEETTEEE
T ss_pred             eEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeC--CCcEEEEEecCCCEE
Confidence            8899987554 455555667888888865432    122234455789999997666655543  344554444433222


Q ss_pred             EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952          167 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA  201 (573)
Q Consensus       167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~  201 (573)
                      .+......-.....|++++.+..|..+. ..+.|.
T Consensus       186 ~~~~~~~h~~~v~~l~~sp~g~~l~s~s-~D~~v~  219 (345)
T 3fm0_A          186 CCATLEGHESTVWSLAFDPSGQRLASCS-DDRTVR  219 (345)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEE-TTSCEE
T ss_pred             EEEEecCCCCceEEEEECCCCCEEEEEe-CCCeEE
Confidence            1111022334457899997766665544 344443

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=95.44  E-value=0.0085  Score=42.04  Aligned_cols=29  Identities=7%  Similarity=-0.118  Sum_probs=25.7

Q ss_pred             CcccccccccccCcc-ceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGST-TVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~-~~~C-Cp~~~~l~~d~~~  305 (573)
                      ++|+|+|+..+   . +|+| |+.||.|..|+++
T Consensus         7 ggC~~~C~n~~---ggs~~C~C~~Gy~L~~Dg~t   37 (53)
T 2bz6_L            7 GGCEQYCSDHT---GTKRSCRCHEGYSLLADGVS   37 (53)
T ss_dssp             GGCSSEEEEET---TTEEEEECCTTEEECTTSSC
T ss_pred             CCcCCEeEcCC---CCCEEeeCCCCCEECCCCCc
Confidence            68999999987   4 6999 9999999988876

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=95.42  E-value=0.006  Score=47.71  Aligned_cols=67  Identities=37%  Similarity=0.907  Sum_probs=45.1

Q ss_pred             CccccCCCCCccCC-ccccCCCCccccCCCCceecC-CCcccccccccCCCCCCCCCCCCCCCCCCCCCCCceecC
Q psy952          346 VDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLE-DGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACR  419 (573)
Q Consensus       346 ~~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~~-~~~c~~~~~~C~~~~~~~~~~~~~C~~~~C~~~~~f~C~  419 (573)
                      +++|.. .+..|.+ .|.+..++|.|.|+.+|.... .++.+.++++|...+..+.  ...|.+.   .+ .|+|.
T Consensus         3 ideC~~-~~~~C~~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~--~~~C~n~---~g-~y~C~   71 (86)
T 1lmj_A            3 IDECRI-SPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR--GGVCHNT---EG-SYRCE   71 (86)
T ss_dssp             CCTTTT-CSSTTTTSCEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTT--TSEEEEE---TT-EEEEE
T ss_pred             cccccC-CCCCCCCCEEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCC--CCEeEcC---CC-CEEEE
Confidence            567766 4566877 899999999999999998753 2334568899976554332  1345543   34 66664

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=95.37  E-value=2.7  Score=42.51  Aligned_cols=230  Identities=10%  Similarity=0.034  Sum_probs=132.3

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-EEE
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-RVI   83 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~i~   83 (573)
                      .+|.+......+|+.+. ...|+..++...... ........+..++++  . .+..+-...+.|...+....... ..+
T Consensus       150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~-~~l~sgs~d~~i~~~d~~~~~~~~~~~  226 (420)
T 4gga_A          150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--S-YILSSGSRSGHIHHHDVRVAEHHVATL  226 (420)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--C-CEEEEEeCCCceeEeeecccceeeEEe
Confidence            45665543334555544 467888888755432 222233446677776  2 34555556677877776653332 223


Q ss_pred             cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-----eEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEE
Q psy952           84 RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-----KTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGK  157 (573)
Q Consensus        84 ~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-----~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r  157 (573)
                      ......+.++.+.+.+..| .+-...+.|.+.++.....     ............+++.|....++.+-.+ ....|..
T Consensus       227 ~~h~~~~~~~~~~~~g~~l-~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~i  305 (420)
T 4gga_A          227 SGHSQEVCGLRWAPDGRHL-ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRI  305 (420)
T ss_dssp             ECCSSCEEEEEECTTSSEE-EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEE
T ss_pred             cccccceeeeeecCCCCee-eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEE
Confidence            3334567777777655444 4444567788877653321     1222334456889999988777766433 3456766


Q ss_pred             EeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC-CCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEe
Q psy952          158 IGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA-HLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWT  235 (573)
Q Consensus       158 ~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywt  235 (573)
                      .++........+   ..-..+..+++.+..+.|+.+-. ..+.|...++........+.+. .....+|++. ++.+++|
T Consensus       306 wd~~t~~~~~~~---~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH-~~~V~~l~~spdg~~l~S  381 (420)
T 4gga_A          306 WNVCSGACLSAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVAS  381 (420)
T ss_dssp             EETTTTEEEEEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEE
T ss_pred             EeCCccccceee---ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEE
Confidence            666544333333   22344567888888888887754 4678888888655443334432 3456778874 4455555


Q ss_pred             cCCCCceEE
Q psy952          236 DWNTKSINR  244 (573)
Q Consensus       236 d~~~~~I~~  244 (573)
                      -...+.|..
T Consensus       382 ~s~D~tvri  390 (420)
T 4gga_A          382 AAADETLRL  390 (420)
T ss_dssp             EETTTEEEE
T ss_pred             EecCCeEEE
Confidence            445555543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=95.27  E-value=2.6  Score=41.68  Aligned_cols=229  Identities=10%  Similarity=0.011  Sum_probs=124.9

Q ss_pred             CCCceeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc
Q psy952            5 DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR   84 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~   84 (573)
                      +..+|.+......+|+.+....++..+++....... .....+..+++.+..+.+.++....+.|...++........+.
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~   98 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMS-QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK   98 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEE-EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCEEEEEecCCcceeee-eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE
Confidence            455666655444567767667777777765432221 1122355667777788887877777789988886543322222


Q ss_pred             CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC-c-eeEeccCCCCcce-EEEeCCCceEEEEecCCcCeEEEEecc
Q psy952           85 HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT-N-RKTLKTAIQDPRG-ITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus        85 ~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~-~-~~~l~~~~~~P~~-Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      .. ..+.+++++  .+.++++.  .+.|.+.++... . ...+..    |.+ +++.+  .+|.++.....+.|...++.
T Consensus        99 ~~-~~v~~v~~~--~~~~~~~~--~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~  167 (355)
T 3vu4_A           99 VD-APVKDLFLS--REFIVVSY--GDVISVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQ  167 (355)
T ss_dssp             CS-SCEEEEEEC--SSEEEEEE--TTEEEEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECC
T ss_pred             CC-CceEEEEEc--CCEEEEEE--cCEEEEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECC
Confidence            22 355566654  45566553  467888888754 2 111111    333 33444  45555422234556666665


Q ss_pred             CCC-----------------cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe-EEEEeCCC-CcEEEEEeCCcccee
Q psy952          162 GSN-----------------FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY-IASVDLDG-KHKHIVISGQKVPHV  222 (573)
Q Consensus       162 G~~-----------------~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~-I~~~~~dG-~~~~~l~~~~~~~~p  222 (573)
                      ...                 ...+   ...-.....|++.+.+. +..+-...+. |...++.. .....+..+......
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~~~~---~~h~~~v~~~~~s~~g~-~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v  243 (355)
T 3vu4_A          168 SSGSATTQDQGVQQKAILGKGVLI---KAHTNPIKMVRLNRKSD-MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADV  243 (355)
T ss_dssp             C------------------CCEEE---CCCSSCEEEEEECTTSS-EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCE
T ss_pred             CCCccccccccccccccCcccEEE---EccCCceEEEEECCCCC-EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcE
Confidence            422                 2222   22333457899987554 4445455666 88888864 444444423113456


Q ss_pred             EEEeee-CCeEEEecCCCCceEEEeccC
Q psy952          223 FALTLF-EDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       223 ~~ia~~-~~~lywtd~~~~~I~~~~~~~  249 (573)
                      .+|++. ++.++.+-...+.|..-+...
T Consensus       244 ~~~~~s~~~~~l~s~s~d~~v~iw~~~~  271 (355)
T 3vu4_A          244 VDMKWSTDGSKLAVVSDKWTLHVFEIFN  271 (355)
T ss_dssp             EEEEECTTSCEEEEEETTCEEEEEESSC
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEEccC
Confidence            778874 345555545556666655433

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=95.17  E-value=2.4  Score=40.63  Aligned_cols=199  Identities=6%  Similarity=-0.024  Sum_probs=109.0

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCc---eeecccCCcceEEEEEEcC-CCEEEEEECCCCeEEEEEcCCCc--ce
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQ---YSLVHQDLLNVVAMDFHYK-ENRFYFADVAAKTIYRSRVGSTE--KE   80 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~---~~~~~~~~~~~~~v~~d~~-~~~ly~~d~~~~~I~~~~~~g~~--~~   80 (573)
                      ++.+......+|+-+. ...|+..++.+..   ...+......+.+|+|.+. .+.++.+-...+.|...++....  ..
T Consensus        13 ~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~   92 (297)
T 2pm7_B           13 HDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI   92 (297)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE
Confidence            4444432233444443 4678888886432   1222223345778999653 35666676677889999987543  22


Q ss_pred             EEEcCCCCCcceeEEeecC-CcEEEEeCCCCeEEEEEcCCCc---eeEeccCCCCcceEEEeCCC------------ceE
Q psy952           81 RVIRHDSHGLEGLAVDWVG-RKLYWLDRHSKQLDVAELDGTN---RKTLKTAIQDPRGITLHPGI------------GYV  144 (573)
Q Consensus        81 ~i~~~~~~~p~glavD~~~-~~LY~td~~~~~I~~~~ldg~~---~~~l~~~~~~P~~Iavdp~~------------g~L  144 (573)
                      ..+......+..|++.+.. +.++.+-...+.|.+.++....   ...+.........+++.|..            +.+
T Consensus        93 ~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~  172 (297)
T 2pm7_B           93 AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRK  172 (297)
T ss_dssp             EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCE
T ss_pred             EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcce
Confidence            2232223467788887652 4555555567889888886432   12222344456778888742            334


Q ss_pred             EEEecCCcCeEEEEeccCCCc-EEEE-ecCCCCCCCceEEEeccC--CeEEEEeCCCCeEEEEeCCC
Q psy952          145 YFSSWNLQAYIGKIGMDGSNF-TRIL-THEDDIAWPNALTLDYFT--ERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       145 Ywtd~~~~~~I~r~~ldG~~~-~~l~-~~~~~l~~P~glaiD~~~--~~LYw~D~~~~~I~~~~~dG  207 (573)
                      +++-. ....|..-++..... ..+. .....-.....|++.+..  +.++.+-...+.|...+++.
T Consensus       173 l~sgs-~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          173 FVTGG-ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             EEEEE-TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             EEEEc-CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            44432 234455555443321 1111 002223345788888764  45666655667776666654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=95.16  E-value=0.15  Score=54.62  Aligned_cols=105  Identities=16%  Similarity=0.195  Sum_probs=71.2

Q ss_pred             CCcceEEEEEEcCCCEEEEEECC---------------------CCeEEEEEcCCCc-------ceEEEc----------
Q psy952           43 DLLNVVAMDFHYKENRFYFADVA---------------------AKTIYRSRVGSTE-------KERVIR----------   84 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~---------------------~~~I~~~~~~g~~-------~~~i~~----------   84 (573)
                      .+.++.++++++.++.||++-..                     .+.|+|+..++..       .+.++.          
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            46679999999999999998553                     2679999875432       112221          


Q ss_pred             -----------CCCCCcceeEEeecCCcEEEE-eCC-----------CCeEEEEEcCCCceeEecc--CCCCcceEEEeC
Q psy952           85 -----------HDSHGLEGLAVDWVGRKLYWL-DRH-----------SKQLDVAELDGTNRKTLKT--AIQDPRGITLHP  139 (573)
Q Consensus        85 -----------~~~~~p~glavD~~~~~LY~t-d~~-----------~~~I~~~~ldg~~~~~l~~--~~~~P~~Iavdp  139 (573)
                                 ..+..|.+|+||..+ +||+. |..           ++.+.+.+......+.++.  .-....|+++.|
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~~G-~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fsp  540 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDKAG-RLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSP  540 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECTTC-CEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECT
T ss_pred             ccccccccCCCCCccCCcceEECCCC-CEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECC
Confidence                       125689999999855 57665 432           3467777766444444442  334588999999


Q ss_pred             CCceEEEEe
Q psy952          140 GIGYVYFSS  148 (573)
Q Consensus       140 ~~g~LYwtd  148 (573)
                      ....||+.-
T Consensus       541 Dg~tlfvni  549 (592)
T 3zwu_A          541 DQKTLFVGI  549 (592)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEE
Confidence            888898875

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=95.15  E-value=0.012  Score=40.96  Aligned_cols=29  Identities=17%  Similarity=0.169  Sum_probs=25.9

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ++|+|+|+..+   ++|+| |+.||.|..|+++
T Consensus         6 g~C~~~C~n~~---gs~~C~C~~Gy~L~~d~~t   35 (51)
T 1kig_L            6 GGCDQFCREER---SEVRCSCAHGYVLGDDSKS   35 (51)
T ss_dssp             TSSSSCCCEET---TEECCCCCTTEEECTTSSC
T ss_pred             CCcCCEeEcCC---CCeEEeCCCCcEECCCCCc
Confidence            68999999988   67999 9999999988775

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=95.13  E-value=0.011  Score=43.87  Aligned_cols=30  Identities=13%  Similarity=-0.001  Sum_probs=26.1

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ++|+|+|+..+ | .+|+| |+.||.|..|+++
T Consensus        13 ggC~h~C~n~~-g-~s~~C~C~~Gy~L~~D~~t   43 (69)
T 1kli_L           13 GGCEQYCSDHT-G-TKRSCRCHEGYSLLADGVS   43 (69)
T ss_dssp             GGCSSEEEEET-T-TEEEEECCTTEEECTTSSC
T ss_pred             CCcCCEeEcCC-C-CCEEEeCCCCCeECCCCCc
Confidence            88999999988 2 26999 9999999998876

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=95.11  E-value=0.004  Score=56.64  Aligned_cols=104  Identities=19%  Similarity=0.436  Sum_probs=66.3

Q ss_pred             cccccccCccceee-eccceeecCCCCC---CCcccCC--ccccC-CCeeeec-------ceeeCCcCCCCCCCCCCCCC
Q psy952          279 AWLTAHRGSTTVAD-MIRSVYLGSGNKE---NSTCSSS--QFRCN-NGKCIDY-------HLVCNKESDCEDDSDEPLHC  344 (573)
Q Consensus       279 lCl~~~~~~~~~~C-Cp~~~~l~~d~~~---~~~C~~~--~~~C~-~g~Ci~~-------~~~cd~~~~c~d~sde~~~c  344 (573)
                      .|+...   ..|+| |+.||.... +..   +++|...  ...|. ++.|+..       +|+|...++.....   ..|
T Consensus        17 ~C~~~~---g~~~C~C~~G~~g~~-~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~---~~C   89 (186)
T 1z1y_A           17 QLVQMS---NHFXCMCNEGLVHLS-ENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE---DTC   89 (186)
T ss_dssp             EEEECS---SCEEEEECTTEEEEE-TTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET---TEE
T ss_pred             EeECCC---CCeEeECCCCCccCC-CCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC---CCC
Confidence            566655   57999 999998862 222   6788754  45675 4678764       47886444432211   135


Q ss_pred             CCccccCCCCCccCC--ccc----cCCCCccccCCCCceecC-CCccccc--ccccC
Q psy952          345 NVDECAKVETNQCGH--KCV----DTLTGYYCECNTGYKLLE-DGKACTD--IDECI  392 (573)
Q Consensus       345 ~~~~C~~~~~~~C~~--~C~----~~~~~~~C~C~~~f~c~~-~~~c~~~--~~~C~  392 (573)
                      .+++|..   ..|.+  .|.    +..+++.|.|+.+|.... +++-+.+  +++|.
T Consensus        90 ~~d~C~~---~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~  143 (186)
T 1z1y_A           90 VLDVCQY---XNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ  143 (186)
T ss_dssp             EEGGGTT---CCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCC
T ss_pred             CCCcCcC---CCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCccc
Confidence            5678865   35775  787    788899999999998743 2223333  35664

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=95.11  E-value=0.003  Score=52.85  Aligned_cols=97  Identities=16%  Similarity=0.287  Sum_probs=59.7

Q ss_pred             Cccccccccc-ccCccceee-eccceeecCCCCCCCcccC--CccccCCCeeeec-ceeeCCcCCCCCCCCCCCCC-CCc
Q psy952          274 GTTRHAWLTA-HRGSTTVAD-MIRSVYLGSGNKENSTCSS--SQFRCNNGKCIDY-HLVCNKESDCEDDSDEPLHC-NVD  347 (573)
Q Consensus       274 ~~Cs~lCl~~-~~~~~~~~C-Cp~~~~l~~d~~~~~~C~~--~~~~C~~g~Ci~~-~~~cd~~~~c~d~sde~~~c-~~~  347 (573)
                      ..|.+.|+.. .   .+|+| |+.||.+....  ..+|..  ....|. +.|++. +|.|...++..... .. .| +++
T Consensus        10 ~pC~~~C~~~~~---g~y~C~C~~Gy~g~~~~--~~~C~~~C~~~~C~-~~C~~~~~y~C~C~~Gy~~~~-g~-~C~did   81 (118)
T 1dx5_I           10 ANCEYQCQPLDQ---TSYLCVCAEGFAPIPHE--PHRCQMFCNQTACP-ADCDPNTQASCECPEGYILDD-GF-ICTDID   81 (118)
T ss_dssp             CCCSSEEEECSS---SCEEEECCTTEEEETTE--EEEEEECCCSSEEE-CEECTTSTTCEECCTTEEEET-TT-EEEECC
T ss_pred             CCCCCCCCCCCC---CCEEeECCCCccccCCC--CCccccccCCCCCC-CcccCCCCeEeECCCCccCCC-CC-cccccc
Confidence            5677888887 5   67999 99999886431  223322  011122 344432 45664444432111 22 34 467


Q ss_pred             cccCCCCCccCCccccCCCCccccCCCCceecC
Q psy952          348 ECAKVETNQCGHKCVDTLTGYYCECNTGYKLLE  380 (573)
Q Consensus       348 ~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~  380 (573)
                      +|..  ...|...|.+..++|.|.|+.+|+...
T Consensus        82 eC~~--~~~C~~~C~n~~g~y~C~C~~G~~g~~  112 (118)
T 1dx5_I           82 ECEN--GGFCSGVCHNLPGTFECICGPDSALAG  112 (118)
T ss_dssp             HHHH--CSSCSSEEEECSSSEEEEECSSSSCEE
T ss_pred             ccCC--CCCCcCeEEeCCCCEEEECCCCCccCC
Confidence            8865  257855999999999999999997543

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=95.03  E-value=0.0069  Score=49.58  Aligned_cols=66  Identities=23%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCCCCcccCCccccCCCeeeecceeeCCcCCCCCCCCCCCCCCCccccCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKV  352 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~~~~C~~~~~~C~~g~Ci~~~~~cd~~~~c~d~sde~~~c~~~~C~~~  352 (573)
                      ++|++.|+..+   .+|+| |+.||.+.. ++               .|.                      ++++|.. 
T Consensus        37 ~~C~~~C~n~~---g~y~C~C~~Gy~g~~-g~---------------~C~----------------------dideC~~-   74 (107)
T 2w2n_E           37 GGCSYVCNDLK---IGYECLCPDGFQLVA-QR---------------RCE----------------------DIDECQD-   74 (107)
T ss_dssp             GGCSSEEECCS---BSCEEECCTTCEEET-TT---------------EEE----------------------C-------
T ss_pred             CCCCCEeEeCC---CCeEEECCCCccccC-CC---------------ccc----------------------cccccCC-
Confidence            57888888776   67999 999998741 11               111                      1344432 


Q ss_pred             CCCccCCccccCCCCccccCCCCceecCCC
Q psy952          353 ETNQCGHKCVDTLTGYYCECNTGYKLLEDG  382 (573)
Q Consensus       353 ~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~  382 (573)
                       ...|...|.|..++|.|.|+.+|.....+
T Consensus        75 -~~~C~~~C~n~~gsy~C~C~~Gy~~~~d~  103 (107)
T 2w2n_E           75 -PDTCSQLCVNLEGGYKCQCEEGFQLDPHT  103 (107)
T ss_dssp             ------------------------------
T ss_pred             -CCCcCCeeecCCCCEEEECCCCceECCCC
Confidence             24566688889999999999999865543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=95.02  E-value=5.2  Score=43.80  Aligned_cols=57  Identities=5%  Similarity=-0.105  Sum_probs=32.3

Q ss_pred             CeEEEEeCCCCcEEEEEeCCccceeE-EEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          198 DYIASVDLDGKHKHIVISGQKVPHVF-ALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       198 ~~I~~~~~dG~~~~~l~~~~~~~~p~-~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      +.|..+|+......--.... .+... .++..++.||... ..+.|+.++..+|+.+-.+
T Consensus       455 g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt-~dg~l~a~D~~tG~~lw~~  512 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGS-ADGRVIAYAADTGEKLWEQ  512 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEEC-TTSEEEEEETTTCCEEEEE
T ss_pred             eeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEEC-CCCcEEEEECCCCccceee
Confidence            45777777543332222211 11111 3444567777774 5678999998888866443

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=94.94  E-value=6  Score=44.11  Aligned_cols=232  Identities=9%  Similarity=0.059  Sum_probs=124.9

Q ss_pred             ecccEEEEEcCCCceeecccC-------CcceEEEEEEcCC-CEEEEEECC-C----CeEEEEEcCCCcceEEEcC-CC-
Q psy952           23 NKYYVRNMSLDATQYSLVHQD-------LLNVVAMDFHYKE-NRFYFADVA-A----KTIYRSRVGSTEKERVIRH-DS-   87 (573)
Q Consensus        23 ~~~~I~~i~l~g~~~~~~~~~-------~~~~~~v~~d~~~-~~ly~~d~~-~----~~I~~~~~~g~~~~~i~~~-~~-   87 (573)
                      ....|+|-.=.|...+.+...       ...+.+|++|+.+ +.||++-.. .    +.|++..-.|...+.+... .+ 
T Consensus        35 ~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~  114 (789)
T 1sqj_A           35 DIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMG  114 (789)
T ss_dssp             SSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCC
T ss_pred             cCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccC
Confidence            345677666556655554332       2358899999854 567776432 2    5777765555555544321 10 


Q ss_pred             ------CCcceeEEeecC-CcEEEEeCCCCeEEEEEcCCCceeEeccC----C--CCcceEEEeCCC-ceEEEEecCCcC
Q psy952           88 ------HGLEGLAVDWVG-RKLYWLDRHSKQLDVAELDGTNRKTLKTA----I--QDPRGITLHPGI-GYVYFSSWNLQA  153 (573)
Q Consensus        88 ------~~p~glavD~~~-~~LY~td~~~~~I~~~~ldg~~~~~l~~~----~--~~P~~Iavdp~~-g~LYwtd~~~~~  153 (573)
                            ..+..|++++.. +.||... ..+.|++..-.|..=+.+...    .  .....|+++|.+ +.||+.... ..
T Consensus       115 ~~~~~~~~~~~iav~p~~~~~v~~g~-~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~-~~  192 (789)
T 1sqj_A          115 ANDMGRNNGERLAVNPFNSNEVWMGT-RTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA-PQ  192 (789)
T ss_dssp             TTSTTTTSCCCEEEETTEEEEEEEEC-SSSCEEEESSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS-TT
T ss_pred             ccCCCccceeEEEEcCCCCCEEEEEe-ccCCEEEECCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC-CC
Confidence                  123579999764 4555543 345677655555544443321    1  224578888865 478887632 15


Q ss_pred             eEEEEeccCCCcEEEEecCCCC---------------CCCceEEEeccCCeEEEEe--------CCCCeEEEEeCCCCcE
Q psy952          154 YIGKIGMDGSNFTRILTHEDDI---------------AWPNALTLDYFTERLYWAD--------AHLDYIASVDLDGKHK  210 (573)
Q Consensus       154 ~I~r~~ldG~~~~~l~~~~~~l---------------~~P~glaiD~~~~~LYw~D--------~~~~~I~~~~~dG~~~  210 (573)
                      .|++..=.|..=+.+.......               ..|..|++++..++||.+-        ...+.|++..-.|..=
T Consensus       193 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~p~~g~~g~l~~S~DgG~tW  272 (789)
T 1sqj_A          193 GMYVTHDGGVSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYADYPGPWGVTFGEVWRQNRTSGAW  272 (789)
T ss_dssp             CEEEESSTTSSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEEEESSCSSSCCCCCCEEEEETTTCCE
T ss_pred             eEEEEcCCCcCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEEEecCCCCCCCCCceEEEEeCCCCce
Confidence            6776543344433321101111               1237788887788999872        2456788877656544


Q ss_pred             EEEEeCCcc----------c---eeEEEeee---CCeEEEecCC------CCceEEEeccCCcceEEEc
Q psy952          211 HIVISGQKV----------P---HVFALTLF---EDHIYWTDWN------TKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       211 ~~l~~~~~~----------~---~p~~ia~~---~~~lywtd~~------~~~I~~~~~~~g~~~~~l~  257 (573)
                      +.+......          .   .-.+|++.   .+.||++-..      ...|++.. ..|+.-+.+.
T Consensus       273 ~~~~~~~~~~~p~~~~~~~~~~~g~~~lav~p~~~~~v~~~~~~~~~~~~~~~l~~S~-DgG~tW~~~~  340 (789)
T 1sqj_A          273 DDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLST-DAGATWKDVT  340 (789)
T ss_dssp             EECCCCTTTEESCCCSSCCSCCCEEEEEEEETTEEEEEEEEEECCCSCSSCCCEEEES-STTSSEEEHH
T ss_pred             EECcCCCCccccccccccccccCceEEEEECCCCCCEEEEEEeccCCCcccccEEEec-CCCCCceeCc
Confidence            333221100          0   12466764   3567776432      15676653 4465555443

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=94.94  E-value=0.017  Score=40.84  Aligned_cols=29  Identities=17%  Similarity=0.170  Sum_probs=25.8

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ++|+|+|+..+   ++|+| |+.||.|..|+++
T Consensus         9 ~~C~~~C~nt~---Gsy~C~C~~Gy~L~~d~~~   38 (55)
T 2jkh_L            9 GDCDQFCHEEQ---NSVVCSCARGYTLADNGKA   38 (55)
T ss_dssp             GGCSSEEEEET---TEEEEECCTTEEECTTSSC
T ss_pred             CCcCcEeEcCC---CCeEEeCCCCCEECCCCCe
Confidence            67999999988   68999 9999999888776

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=94.84  E-value=5.2  Score=42.95  Aligned_cols=30  Identities=10%  Similarity=0.104  Sum_probs=21.4

Q ss_pred             EeeeCCeEEEecCCCCceEEEeccCCcceEE
Q psy952          225 LTLFEDHIYWTDWNTKSINRADKFNGRDYRV  255 (573)
Q Consensus       225 ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~  255 (573)
                      ++..++.||+.. ..+.|+.++..+|+.+-.
T Consensus       480 ~~tagg~vf~gt-~dg~l~A~D~~tG~~lW~  509 (599)
T 1w6s_A          480 MATAGDLVFYGT-LDGYLKARDSDTGDLLWK  509 (599)
T ss_dssp             EEETTTEEEEEC-TTSEEEEEETTTCCEEEE
T ss_pred             eEecCCEEEEEC-CCCeEEEEECCCCCEEEE
Confidence            555678888864 457788888888876533

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=94.78  E-value=0.037  Score=47.24  Aligned_cols=77  Identities=31%  Similarity=0.775  Sum_probs=52.4

Q ss_pred             CCcccCCccccC-CCeeeec--ceeeCCcCCCCCCCCCCCCC--CCccccCCCCCccCC--ccccCCCCccccCCCCcee
Q psy952          306 NSTCSSSQFRCN-NGKCIDY--HLVCNKESDCEDDSDEPLHC--NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYKL  378 (573)
Q Consensus       306 ~~~C~~~~~~C~-~g~Ci~~--~~~cd~~~~c~d~sde~~~c--~~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~c  378 (573)
                      +++|......|. ++.|+..  +|+|...++..    .. .|  ++++|..   ..|.+  .|.+..+++.|.|+.+|. 
T Consensus         5 ideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~----G~-~C~~~~~~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~-   75 (135)
T 2vj3_A            5 VDECSLGANPCEHAGKCINTLGSFECQCLQGYT----GP-RCEIDVNECVS---NPCQNDATCLDQIGEFQCICMPGYE-   75 (135)
T ss_dssp             CCTTTSSSCSSSTTCEEEECSSSEEEECCTTEE----ST-TSCEECCTTTT---CCCCSSCEEEECSSCEEEECCTTEE-
T ss_pred             cccccCCCCCCCCCCEeECCCCCEEEECCCCCc----CC-cccccCccCCC---CCCCCCCEEeCCCCCceeeCCCCCc-
Confidence            567776556685 5789875  67886544443    22 34  3567754   45766  799999999999999997 


Q ss_pred             cCCCcccccccccCC
Q psy952          379 LEDGKACTDIDECIE  393 (573)
Q Consensus       379 ~~~~~c~~~~~~C~~  393 (573)
                        +..|-.++++|..
T Consensus        76 --G~~C~~~~~~C~~   88 (135)
T 2vj3_A           76 --GVHCEVNTDECAS   88 (135)
T ss_dssp             --SSSSCEECCTTTT
T ss_pred             --CCcceecCCcccC
Confidence              4446556777763

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=94.64  E-value=2.3  Score=42.01  Aligned_cols=95  Identities=7%  Similarity=0.025  Sum_probs=57.3

Q ss_pred             CCCCeEEEEEcCCCc---------------c-eEEEcCCCCCcceeEEeecCCcEEEEeCCCCe-EEEEEcC-CCceeEe
Q psy952           64 VAAKTIYRSRVGSTE---------------K-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQ-LDVAELD-GTNRKTL  125 (573)
Q Consensus        64 ~~~~~I~~~~~~g~~---------------~-~~i~~~~~~~p~glavD~~~~~LY~td~~~~~-I~~~~ld-g~~~~~l  125 (573)
                      ...+.|..+++....               . ...+......+..|++.+. +++..+-+..+. |.+.++. +....++
T Consensus       156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~-g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK-SDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT-SSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC-CCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            445667777776432               0 1223333457889999874 455566566777 9999987 4444445


Q ss_pred             cc--CCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952          126 KT--AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus       126 ~~--~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      ..  .......|+++|...+|..+.  ....|...++.
T Consensus       235 ~~g~h~~~v~~~~~s~~~~~l~s~s--~d~~v~iw~~~  270 (355)
T 3vu4_A          235 RRGLDRADVVDMKWSTDGSKLAVVS--DKWTLHVFEIF  270 (355)
T ss_dssp             ECTTCCSCEEEEEECTTSCEEEEEE--TTCEEEEEESS
T ss_pred             EcCCCCCcEEEEEECCCCCEEEEEE--CCCEEEEEEcc
Confidence            42  455688999999665555544  24555555554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=94.64  E-value=3.6  Score=40.17  Aligned_cols=140  Identities=7%  Similarity=-0.031  Sum_probs=83.3

Q ss_pred             CEEEEE-ecccEEEEEcCCCceeecc--cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-EEEcC-CCCCcc
Q psy952           17 PWLIFS-NKYYVRNMSLDATQYSLVH--QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-RVIRH-DSHGLE   91 (573)
Q Consensus        17 ~~l~~s-~~~~I~~i~l~g~~~~~~~--~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~i~~~-~~~~p~   91 (573)
                      .+|+.+ ....|+..++.........  .....+..++|++. +.++.+-...+.|..+++...... ..+.. ....+.
T Consensus       140 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~  218 (343)
T 3lrv_A          140 EYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIK  218 (343)
T ss_dssp             CEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEE
T ss_pred             CEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEE
Confidence            355533 3568888998765543222  22234779999974 555666567788999998765443 23333 346788


Q ss_pred             eeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCC---CCc---ceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952           92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAI---QDP---RGITLHPGIGYVYFSSWNLQAYIGKIGM  160 (573)
Q Consensus        92 glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~---~~P---~~Iavdp~~g~LYwtd~~~~~~I~r~~l  160 (573)
                      .|++.+.+..|..+.  .+.|.+.++........+..+   ..+   ..++++|...+|..... ....|...++
T Consensus       219 ~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~-~d~~i~v~~~  290 (343)
T 3lrv_A          219 EVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSN-ESNSLTIYKF  290 (343)
T ss_dssp             EEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEET-TTTEEEEEEE
T ss_pred             EEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecC-CCCcEEEEEE
Confidence            999988766666666  338999998754322111110   012   35999997666665442 1334444444

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.58  E-value=6.2  Score=43.58  Aligned_cols=184  Identities=9%  Similarity=0.033  Sum_probs=102.2

Q ss_pred             CCCEEEEEecccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc--CC--CCC
Q psy952           15 IKPWLIFSNKYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR--HD--SHG   89 (573)
Q Consensus        15 ~~~~l~~s~~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~--~~--~~~   89 (573)
                      ....|.++....|.+++.....+..... ....+..+..  ..+.||++...  .|++++......+.+..  .+  ...
T Consensus        72 ~~g~lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~--~~g~lWigt~~--Gl~~~~~~~~~~~~~~~~~~~l~~~~  147 (758)
T 3ott_A           72 DNTYLYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL--QGDTLWLGALN--GLYTYQLQSRKLTSFDTRRNGLPNNT  147 (758)
T ss_dssp             TTTEEEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE--ETTEEEEEETT--EEEEEETTTCCEEEECHHHHCCSCSC
T ss_pred             CCCcEEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe--cCCcEEEEcCC--cceeEeCCCCeEEEeccCCCCcCCCe
Confidence            3456777777778888876544432211 1123455543  36888887543  68899886544433311  11  234


Q ss_pred             cceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-c---CC--CCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           90 LEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-T---AI--QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        90 p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~---~~--~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      +..|+.|. .++||+.-.  +.|.+++......+.+. .   .+  ...+.|..|...+.||+..   ...|.+.+....
T Consensus       148 i~~i~~d~-~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt---~~Gl~~~~~~~~  221 (758)
T 3ott_A          148 IYSIIRTK-DNQIYVGTY--NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT---EGYLFQYFPSTG  221 (758)
T ss_dssp             EEEEEECT-TCCEEEEET--TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE---EEEEEEEETTTT
T ss_pred             EEEEEEcC-CCCEEEEeC--CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE---CCCCeEEcCCCC
Confidence            66777774 677877653  35888887654433332 1   11  1256788887556666654   235777776543


Q ss_pred             CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEE
Q psy952          164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIV  213 (573)
Q Consensus       164 ~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l  213 (573)
                      ....+..  -.-.....|+.| .++.||++-.  +-|.+++......+.+
T Consensus       222 ~~~~~~~--l~~~~i~~i~~d-~~g~lWigT~--~Gl~~~~~~~~~~~~~  266 (758)
T 3ott_A          222 QIKQTEA--FHNNSIKSLALD-GNGDLLAGTD--NGLYVYHNDTTPLQHI  266 (758)
T ss_dssp             EEEEEEE--EEEEEEEEEEEC-TTCCEEEEET--TEEEEECCTTSCCEEE
T ss_pred             eEEeccC--CCCCeEEEEEEc-CCCCEEEEeC--CceeEEecCCCcEEEE
Confidence            3222210  000123567777 5678888763  4577777765444333

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=94.30  E-value=0.02  Score=40.01  Aligned_cols=30  Identities=43%  Similarity=1.062  Sum_probs=25.5

Q ss_pred             CCccCCccccCCCCccccCCCCceecCCCc
Q psy952          354 TNQCGHKCVDTLTGYYCECNTGYKLLEDGK  383 (573)
Q Consensus       354 ~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~  383 (573)
                      ...|.+.|.|..++|.|.|+.+|.+...++
T Consensus        19 ~~~C~~~C~n~~Gsy~C~C~~Gy~~~~d~~   48 (53)
T 1apq_A           19 QPQCQHLCHNYVGGYFCSCRPGYELQEDRH   48 (53)
T ss_dssp             SCTTSSEEEEETTEEEEECSTTCEECTTSS
T ss_pred             CCCCCCEeECCCCCeEEECCCCCeECCCCC
Confidence            367888999999999999999999876544

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=94.23  E-value=0.0097  Score=51.79  Aligned_cols=39  Identities=33%  Similarity=0.844  Sum_probs=31.5

Q ss_pred             CC-CCccccCCCCCccCC-ccccCCCCccccCCCCceecCCC
Q psy952          343 HC-NVDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLEDG  382 (573)
Q Consensus       343 ~c-~~~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~~~~  382 (573)
                      .| ++++|.. .+..|.+ .|.|..++|.|.|+.+|.....+
T Consensus       103 ~C~dideC~~-~~~~C~~g~C~n~~g~y~C~C~~Gy~g~~~~  143 (147)
T 2w86_A          103 QCEDIDECEV-FPGVCKNGLCVNTRGSFKCQCPSGMTLDATG  143 (147)
T ss_dssp             EEEECCHHHH-STTCSSSSEEEEETTEEEEECCTTCCBCTTS
T ss_pred             ccCccccccC-CCCCCCCCEEECCCCCEEeeCCCCCccCCCC
Confidence            44 5788876 5567987 89999999999999999876644

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=94.13  E-value=0.065  Score=46.41  Aligned_cols=75  Identities=28%  Similarity=0.662  Sum_probs=48.3

Q ss_pred             CCcccCCccccCC-Ceeeec--ceeeCCcCCCCCCCCCCCCCC-CccccCCCCCccCCcc-ccCCCCccccCCCCceecC
Q psy952          306 NSTCSSSQFRCNN-GKCIDY--HLVCNKESDCEDDSDEPLHCN-VDECAKVETNQCGHKC-VDTLTGYYCECNTGYKLLE  380 (573)
Q Consensus       306 ~~~C~~~~~~C~~-g~Ci~~--~~~cd~~~~c~d~sde~~~c~-~~~C~~~~~~~C~~~C-~~~~~~~~C~C~~~f~c~~  380 (573)
                      +++|...  .|.+ +.|+..  +|.|...++..    .. .|. +++|.. .+..|.+.| .+..+++.|.|+.+|.+..
T Consensus        48 ideC~~~--pC~n~g~C~~~~~~y~C~C~~G~~----G~-~C~~~deC~~-~~~~C~~~C~~n~~g~y~C~C~~Gy~l~~  119 (146)
T 1x7a_L           48 GDQCEPN--PCLNGGLCKDDINSYECWCQVGFE----GK-NCELDATCNI-KNGRCKQFCKTGADSKVLCSCTTGYRLAP  119 (146)
T ss_dssp             --CCSSC--SSCTTCEEEECSSCEEEECCSSEE----ST-TTCEECCTTS-GGGSCSSBCCCCSSSCCCCBCCTTEEECT
T ss_pred             cCcCCCC--CCCCCCEeECCCCCEEEecCCCCc----CC-cCCCCccccC-CCCCCcCCCCCCCCCCEEeEcCCCcEeCC
Confidence            4566543  3643 678764  67775444332    22 342 467765 456788899 9999999999999999876


Q ss_pred             CCcccccc
Q psy952          381 DGKACTDI  388 (573)
Q Consensus       381 ~~~c~~~~  388 (573)
                      +++.|.++
T Consensus       120 dG~~C~~~  127 (146)
T 1x7a_L          120 DQKSCKPA  127 (146)
T ss_dssp             TSSSEEEC
T ss_pred             CCCcCCCC
Confidence            55444443

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=94.08  E-value=0.25  Score=52.94  Aligned_cols=108  Identities=9%  Similarity=0.027  Sum_probs=67.1

Q ss_pred             CCCCcceeEEeecCCcEEEEeCC---------------------CCeEEEEEcCCCce-------eEec-----------
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRH---------------------SKQLDVAELDGTNR-------KTLK-----------  126 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~---------------------~~~I~~~~ldg~~~-------~~l~-----------  126 (573)
                      .+.+|+++++++.++.||++-+.                     .+.|+++.+++...       ..++           
T Consensus       382 ~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~~~  461 (592)
T 3zwu_A          382 RMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHAGT  461 (592)
T ss_dssp             CEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTSTTS
T ss_pred             EEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccccc
Confidence            36799999999999999998642                     26788887653211       1111           


Q ss_pred             -----------cCCCCcceEEEeCCCceEEEEecCC-----------cCeEEEEeccCCCcEEEEecCCCCCCCceEEEe
Q psy952          127 -----------TAIQDPRGITLHPGIGYVYFSSWNL-----------QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLD  184 (573)
Q Consensus       127 -----------~~~~~P~~Iavdp~~g~LYwtd~~~-----------~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD  184 (573)
                                 ..+..|-.|+||| .|.||+.+-+.           +..+..........+.|+. ...-....|+++.
T Consensus       462 ~~~~~~~~~~~~~f~~PDNL~fd~-~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~-~P~gaE~TG~~fs  539 (592)
T 3zwu_A          462 PKGGSSNITPQNMFNSPDGLGFDK-AGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFS  539 (592)
T ss_dssp             GGGCCTTCCTTTCCCCEEEEEECT-TCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEEC
T ss_pred             ccccccccCCCCCccCCcceEECC-CCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe-CCCCccCcCeeEC
Confidence                       1255799999999 56677765332           2345555554333333331 2222334588888


Q ss_pred             ccCCeEEEEeC
Q psy952          185 YFTERLYWADA  195 (573)
Q Consensus       185 ~~~~~LYw~D~  195 (573)
                      ++.+.||+.-.
T Consensus       540 pDg~tlfvniQ  550 (592)
T 3zwu_A          540 PDQKTLFVGIQ  550 (592)
T ss_dssp             TTSSEEEEEEE
T ss_pred             CCCCEEEEEEE
Confidence            88888888643

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=94.05  E-value=3.4  Score=45.89  Aligned_cols=165  Identities=15%  Similarity=0.119  Sum_probs=93.2

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc-C----------CCCCcceeEEeecC-CcEEEEeC---
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR-H----------DSHGLEGLAVDWVG-RKLYWLDR---  107 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-~----------~~~~p~glavD~~~-~~LY~td~---  107 (573)
                      ..+.+.+|++++.+..++|+-...+.|+|..-.|...+.+.. .          ....+..|++|+.+ +.||.+-.   
T Consensus        19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~   98 (763)
T 3a0f_A           19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYV   98 (763)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCT
T ss_pred             CCCceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccc
Confidence            445789999999886555555556678887766655454432 1          22356789999854 67887543   


Q ss_pred             ---CCCeEEEEEcCCCceeEeccCC-------CCc--ceEEEeCCC-ceEEEEecCCcCeEEEEeccCCCcEEEEecCCC
Q psy952          108 ---HSKQLDVAELDGTNRKTLKTAI-------QDP--RGITLHPGI-GYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD  174 (573)
Q Consensus       108 ---~~~~I~~~~ldg~~~~~l~~~~-------~~P--~~Iavdp~~-g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~  174 (573)
                         ..+.|++..-.|..=+.+...+       ...  ..|+|+|.+ +.||...  ....|+|..=.|..=+.+......
T Consensus        99 ~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~--~~~~l~~S~DgG~TW~~~~~~~~~  176 (763)
T 3a0f_A           99 QWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGS--RTQGLWRSTDRAQTWSRMNQLPDS  176 (763)
T ss_dssp             TTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC--SSSCEEEESSTTSSCEECTTSCCC
T ss_pred             cCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEe--CCCcEEEECCCCcCccccccCccc
Confidence               1356776655555433332111       111  369999864 6677664  235677765445443332200010


Q ss_pred             C---CCCceEEEeccC-CeEEEEeCCCCeEEEEeCCCCc
Q psy952          175 I---AWPNALTLDYFT-ERLYWADAHLDYIASVDLDGKH  209 (573)
Q Consensus       175 l---~~P~glaiD~~~-~~LYw~D~~~~~I~~~~~dG~~  209 (573)
                      .   .....|++|+.+ ++||++-...+.|++..-.|..
T Consensus       177 ~~~~~~~~~i~~~p~~~~~~~~~~~~~g~v~~S~DgG~t  215 (763)
T 3a0f_A          177 STYGIGIISVIFDPKNVGTAYVASHAVGGLWVTWDGGAN  215 (763)
T ss_dssp             SCTTTCEEEEEECSSSTTCEEEEESSTTCEEEESSSSSS
T ss_pred             CCCccceEEEEECCCCCCEEEEEEeCCCeEEEECCCCCC
Confidence            1   112356788754 5788886644356665433433

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=93.99  E-value=4.8  Score=39.09  Aligned_cols=193  Identities=9%  Similarity=0.028  Sum_probs=99.2

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce--EEE-cC-CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE--RVI-RH-DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT  120 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~i~-~~-~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~  120 (573)
                      ..+..+++++.   ++.+-...+.|+..++......  .++ .. ....+..|++.+.++ +..+-...+.|.+.++...
T Consensus        15 ~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~   90 (330)
T 2hes_X           15 EKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEES   90 (330)
T ss_dssp             SCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC---
T ss_pred             CceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccC
Confidence            34678888854   5555566778888888654222  223 22 234678899987554 4455555678888877432


Q ss_pred             --------ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc--CCCcEEEEecCCCCCCCceEEEeccCCeE
Q psy952          121 --------NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD--GSNFTRILTHEDDIAWPNALTLDYFTERL  190 (573)
Q Consensus       121 --------~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld--G~~~~~l~~~~~~l~~P~glaiD~~~~~L  190 (573)
                              ...++.........|+++|...+|.-..  ....|..-++.  +...+.+......-.....|++.+.+..|
T Consensus        91 ~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s--~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l  168 (330)
T 2hes_X           91 ADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCS--RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALL  168 (330)
T ss_dssp             ----CCCEEEEEEC----CEEEEEECTTSCEEEEEE--TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEE
T ss_pred             cCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEe--CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEE
Confidence                    1222333445578999999655554443  24556666653  22222221102223345688888765544


Q ss_pred             EEEeCCCCeEEEEeCCCCcEEE--EEeCCccceeEEEeeeC---CeEEEecCCCCceEEE
Q psy952          191 YWADAHLDYIASVDLDGKHKHI--VISGQKVPHVFALTLFE---DHIYWTDWNTKSINRA  245 (573)
Q Consensus       191 Yw~D~~~~~I~~~~~dG~~~~~--l~~~~~~~~p~~ia~~~---~~lywtd~~~~~I~~~  245 (573)
                      . +-...+.|...+......+.  .+.+. ......+++..   +.++.+-...+.|..-
T Consensus       169 ~-s~s~D~~i~iW~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw  226 (330)
T 2hes_X          169 A-SSSYDDTVRIWKDYDDDWECVAVLNGH-EGTVWSSDFDKTEGVFRLCSGSDDSTVRVW  226 (330)
T ss_dssp             E-EEETTSCEEEEEEETTEEEEEEEECCC-SSCEEEEEECCSSSSCEEEEEETTSCEEEE
T ss_pred             E-EEcCCCeEEEEECCCCCeeEEEEccCC-CCcEEEEEecCCCCeeEEEEEeCCCeEEEE
Confidence            4 44445666555543332111  22222 23456666643   2344444444555433

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=93.98  E-value=0.025  Score=48.86  Aligned_cols=72  Identities=32%  Similarity=0.899  Sum_probs=44.6

Q ss_pred             CC-CCccccCCCCCccCC--ccccCCCCccccCCCCceecCCC--------cccccccccCCCCCCCCCCCCCCCCCCCC
Q psy952          343 HC-NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDG--------KACTDIDECIEQPGVCSQYPAMCHNRPCD  411 (573)
Q Consensus       343 ~c-~~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~c~~~~--------~c~~~~~~C~~~~~~~~~~~~~C~~~~C~  411 (573)
                      .| ++++|.......|.+  .|.+..++|.|.|+.+|......        +-+.++++|...+..+.. .+.|.+.   
T Consensus        40 ~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~dideC~~~~~~C~~-~~~C~n~---  115 (143)
T 2bou_A           40 TCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDS-STVCFNT---  115 (143)
T ss_dssp             CCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCSCBSSGGGCCEEECCHHHHTCCCCCT-TSEEEEC---
T ss_pred             cCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCccccccCCCCCcCCccCccCcCCCCCC-CCEEECC---
Confidence            45 578887622347875  89999999999999999876432        234577888654333322 2345443   


Q ss_pred             CCCceecC
Q psy952          412 KDTEFACR  419 (573)
Q Consensus       412 ~~~~f~C~  419 (573)
                      .+ .|+|.
T Consensus       116 ~g-~y~C~  122 (143)
T 2bou_A          116 VG-SYSCR  122 (143)
T ss_dssp             SS-CEEEE
T ss_pred             CC-CEEee
Confidence            33 56653

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=93.98  E-value=0.064  Score=53.01  Aligned_cols=79  Identities=35%  Similarity=0.798  Sum_probs=54.0

Q ss_pred             CcccCCccccC-CCeeeec--ceeeCCcCCCCCCCCCCCCC--CCccccCCCCCccCCccccCCCCccccCCCCceecCC
Q psy952          307 STCSSSQFRCN-NGKCIDY--HLVCNKESDCEDDSDEPLHC--NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLED  381 (573)
Q Consensus       307 ~~C~~~~~~C~-~g~Ci~~--~~~cd~~~~c~d~sde~~~c--~~~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~  381 (573)
                      +.|...+  |. ++.|+..  .|.|.+.++.    ... .|  ++++|.......|.+.|.+..+++.|.|+.+|....+
T Consensus         6 ~~C~~~p--C~~~g~C~~~~~~~~C~C~~g~----~g~-~C~~~~~eC~~~~~~~C~~~C~~~~g~~~C~C~~g~~~~~~   78 (317)
T 3h5c_B            6 SPCISQP--CLHNGSCQDSIWGYTCTCSPGY----EGS-NCELAKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGED   78 (317)
T ss_dssp             CCTTSCC--CTTTCCCCCCSSSCCCCCSSSC----CSS-SSCCCSSSCCTTCTTSCSSEEECCSSSCEEECCTTEECCTT
T ss_pred             CcCCCCC--CCCCCEeECCCCCeEEECCCCC----cCC-ccccCcccCCCCCCCCCcCccccCCCeeEEecccccccccc
Confidence            4565543  54 3567654  5778654444    333 45  4788975224789999999999999999999998766


Q ss_pred             CcccccccccC
Q psy952          382 GKACTDIDECI  392 (573)
Q Consensus       382 ~~c~~~~~~C~  392 (573)
                      .+.|.+..+|.
T Consensus        79 ~~~C~~~~~c~   89 (317)
T 3h5c_B           79 HKQCVPHDQCA   89 (317)
T ss_dssp             SSCCEECSSCC
T ss_pred             ccccccccccc
Confidence            65666666663

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=93.78  E-value=0.031  Score=40.06  Aligned_cols=30  Identities=13%  Similarity=0.108  Sum_probs=25.6

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ++|+|+|+..+ + ++|.| |+.||.|..|+++
T Consensus         7 ggC~~~C~n~~-~-gs~~C~C~~Gy~L~~D~~t   37 (59)
T 2wph_E            7 GRCEQFCKNSA-D-NKVVCSCTEGYRLAENQKS   37 (59)
T ss_dssp             GGCSSEEEECS-T-TCEEEECCTTEEECTTSSC
T ss_pred             CCcCCEeEeCC-C-CCEEeeCCCCcEECCCCCc
Confidence            78999999877 1 37999 9999999988775

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=93.77  E-value=0.028  Score=40.31  Aligned_cols=35  Identities=29%  Similarity=0.809  Sum_probs=29.2

Q ss_pred             CCCccCCccccCC-CCccccCCCCceecCCCccccc
Q psy952          353 ETNQCGHKCVDTL-TGYYCECNTGYKLLEDGKACTD  387 (573)
Q Consensus       353 ~~~~C~~~C~~~~-~~~~C~C~~~f~c~~~~~c~~~  387 (573)
                      .+..|.+.|.+.. +++.|.|+.+|.+..+++.|.+
T Consensus         5 ~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d   40 (59)
T 2wph_E            5 KNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP   40 (59)
T ss_dssp             GGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccC
Confidence            4567888999998 5999999999999887766655

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.68  E-value=5.3  Score=38.46  Aligned_cols=200  Identities=9%  Similarity=0.053  Sum_probs=107.3

Q ss_pred             ccEEEEEcCCCceeeccc--CCcceEEEEEEcCCCEEEEEECC---------CCeEEEEEcCCCcceEEEcCCCCCcc-e
Q psy952           25 YYVRNMSLDATQYSLVHQ--DLLNVVAMDFHYKENRFYFADVA---------AKTIYRSRVGSTEKERVIRHDSHGLE-G   92 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~--~~~~~~~v~~d~~~~~ly~~d~~---------~~~I~~~~~~g~~~~~i~~~~~~~p~-g   92 (573)
                      ..+.++++.......+..  ....-.+++..  +++||+.--.         ...++++++.....+.+..  +..|+ +
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~  114 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAP--MSVPRNR  114 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCC--CSSCCBT
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCC--CCcCccc
Confidence            468888887665544311  11111233333  7889987432         2468888887655444322  22221 1


Q ss_pred             eEEeecCCcEEEEeC-----CCCeEEEEEcCCCceeEeccCCCCc---ceEEEeCCCceEEEEecCC----cCeEEEEec
Q psy952           93 LAVDWVGRKLYWLDR-----HSKQLDVAELDGTNRKTLKTAIQDP---RGITLHPGIGYVYFSSWNL----QAYIGKIGM  160 (573)
Q Consensus        93 lavD~~~~~LY~td~-----~~~~I~~~~ldg~~~~~l~~~~~~P---~~Iavdp~~g~LYwtd~~~----~~~I~r~~l  160 (573)
                      .+.-..+++||+.-.     ....++++++....-+.+. .+..|   .+.++.  ++.||+.-...    ...+++.++
T Consensus       115 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~  191 (308)
T 1zgk_A          115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-PMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYP  191 (308)
T ss_dssp             CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEET
T ss_pred             cEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-CCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeC
Confidence            122224789999742     1357888988765544443 22222   233443  67899874211    346788877


Q ss_pred             cCCCcEEEEecCCCCCCCc---eEEEeccCCeEEEEeCC-----CCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeE
Q psy952          161 DGSNFTRILTHEDDIAWPN---ALTLDYFTERLYWADAH-----LDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHI  232 (573)
Q Consensus       161 dG~~~~~l~~~~~~l~~P~---glaiD~~~~~LYw~D~~-----~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~l  232 (573)
                      ....-+.+    ..+..|.   ++++  .+++||+.-..     ...|+++++....=+.+........-.++++.+++|
T Consensus       192 ~~~~W~~~----~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i  265 (308)
T 1zgk_A          192 ERNEWRMI----TAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRI  265 (308)
T ss_dssp             TTTEEEEC----CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEE
T ss_pred             CCCeEeeC----CCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEE
Confidence            64432222    2333332   3333  37899998543     357899998765444332211011224666778899


Q ss_pred             EEecC
Q psy952          233 YWTDW  237 (573)
Q Consensus       233 ywtd~  237 (573)
                      |+.-.
T Consensus       266 ~v~GG  270 (308)
T 1zgk_A          266 YVLGG  270 (308)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            88743

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=93.62  E-value=0.087  Score=40.53  Aligned_cols=44  Identities=43%  Similarity=1.010  Sum_probs=33.4

Q ss_pred             CccccCCCCCccCC-ccccCCCCccccCCCCceecCCCcccccccccCC
Q psy952          346 VDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLEDGKACTDIDECIE  393 (573)
Q Consensus       346 ~~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~C~~  393 (573)
                      +++|..  ...|.+ .|.+..++|.|.|+.+|.. .+. -+.++++|..
T Consensus         5 ideC~~--~~~C~~g~C~n~~g~y~C~C~~Gy~~-~g~-~C~dideC~~   49 (82)
T 1emn_A            5 MDECKE--PDVCKHGQCINTDGSYRCECPFGYIL-AGN-ECVDTDECSV   49 (82)
T ss_dssp             CCSSSS--TTSCSSSEECCCSSCCCEECCTTEEE-ETT-EEEECCGGGT
T ss_pred             cccCCC--CCCcCCCEEEecCCCEEEECCCCeEC-CCC-ccCCcccccC
Confidence            566753  356777 8999999999999999987 343 4478889863

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=93.08  E-value=0.041  Score=42.40  Aligned_cols=70  Identities=26%  Similarity=0.667  Sum_probs=43.3

Q ss_pred             CCcccCCccccCCCeeeec--ceeeCCcCCCCCCCCCCCCC-CCccccCCCCCccCC-ccccCCCCccccCCCCceecCC
Q psy952          306 NSTCSSSQFRCNNGKCIDY--HLVCNKESDCEDDSDEPLHC-NVDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLED  381 (573)
Q Consensus       306 ~~~C~~~~~~C~~g~Ci~~--~~~cd~~~~c~d~sde~~~c-~~~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~~~  381 (573)
                      +++|.. ...|.++.|+..  +|+|...++...  +.. .| ++++|..  ...|.+ .|.+..++|.|.|+.+|.....
T Consensus         5 ideC~~-~~~C~~g~C~n~~g~y~C~C~~Gy~~--~g~-~C~dideC~~--~~~C~~~~C~n~~g~y~C~C~~G~~g~~~   78 (82)
T 1emn_A            5 MDECKE-PDVCKHGQCINTDGSYRCECPFGYIL--AGN-ECVDTDECSV--GNPCGNGTCKNVIGGFECTCEEGFEPGPM   78 (82)
T ss_dssp             CCSSSS-TTSCSSSEECCCSSCCCEECCTTEEE--ETT-EEEECCGGGT--CCTTSSSCEEECSSSEEECCSSSSCCCSS
T ss_pred             cccCCC-CCCcCCCEEEecCCCEEEECCCCeEC--CCC-ccCCcccccC--CCCCCCCEeECCCCCEEeECCCCeEeCCC
Confidence            345554 334656677654  566654443321  122 33 3677863  246776 8999999999999999976543

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=92.96  E-value=7.3  Score=43.37  Aligned_cols=161  Identities=15%  Similarity=0.143  Sum_probs=90.9

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC------CCCCcceeEEeecC-CcEEEEeCC-C----CeE
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH------DSHGLEGLAVDWVG-RKLYWLDRH-S----KQL  112 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~------~~~~p~glavD~~~-~~LY~td~~-~----~~I  112 (573)
                      ..+.+|++++.+..++|+-...+.|+|..-.|...+.+...      .......|++|+.. +.||++-.. .    +.|
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~~v   94 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAF   94 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcccEE
Confidence            56889999987644444444456788877666555544321      12357889999743 568876532 2    567


Q ss_pred             EEEEcCCCceeEeccCCC---------CcceEEEeCCCc-eEEEEecCCcCeEEEEeccCCCcEEEEecCCC--C--CCC
Q psy952          113 DVAELDGTNRKTLKTAIQ---------DPRGITLHPGIG-YVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD--I--AWP  178 (573)
Q Consensus       113 ~~~~ldg~~~~~l~~~~~---------~P~~Iavdp~~g-~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~--l--~~P  178 (573)
                      ++..-.|..=+.+...+.         ....|+++|.+. .||...  ....|+|..=.|..=+.+.. ...  .  ...
T Consensus        95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~--~~~gl~~S~DgG~TW~~~~~-~~~~~~~~~~~  171 (789)
T 1sqj_A           95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT--RTEGIWKSSDRAKTWTNVTS-IPDAFTNGIGY  171 (789)
T ss_dssp             EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC--SSSCEEEESSTTSSCEEETT-SCCCCSTTTCE
T ss_pred             EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe--ccCCEEEECCCCcccCCCcc-CccccCCCCCe
Confidence            776655655444322111         235799998754 555543  24567776544554333320 010  0  112


Q ss_pred             ceEEEeccC-CeEEEEeCCCCeEEEEeCCCC
Q psy952          179 NALTLDYFT-ERLYWADAHLDYIASVDLDGK  208 (573)
Q Consensus       179 ~glaiD~~~-~~LYw~D~~~~~I~~~~~dG~  208 (573)
                      ..|++|+.+ +.||++-.....|++..-.|.
T Consensus       172 ~~i~~~p~~~~~~~~~~~~~~~v~~S~DgG~  202 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATAPQGMYVTHDGGV  202 (789)
T ss_dssp             EEEEECTTSTTCEEEEESSTTCEEEESSTTS
T ss_pred             EEEEECCCCCCEEEEEEcCCCeEEEEcCCCc
Confidence            467778754 578887654356666443343

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=92.93  E-value=7  Score=41.57  Aligned_cols=219  Identities=7%  Similarity=-0.024  Sum_probs=117.1

Q ss_pred             CCCceeeCCCCCCEEEEEec--ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE
Q psy952            5 DESTCKRRDSIKPWLIFSNK--YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV   82 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~~--~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i   82 (573)
                      +|....+.. +..-++.+..  ..|+  +  +.....+......+..|+|.|.+           .+..+++.......+
T Consensus        16 ~~v~sv~~S-pDG~~iASas~D~TV~--d--~~~~~~l~gh~~~v~~V~FsPdg-----------~~~~~~~~~~~~~~~   79 (588)
T 2j04_A           16 DWKNNLTWA-RDGTLYLTTFPDISIG--Q--PKYAKDINCNSKNLFHVKEFPLE-----------FENKLDFELAQQNGL   79 (588)
T ss_dssp             SSSCCEEEC-TTSCEEEECSSSEEEE--E--ECCCSCCSSBGGGTEEEEEECCC-----------CCCTTTTSCCCSSCS
T ss_pred             ccEEEEEEC-CCCCEEEEEcCCceee--c--ccccceecCCCccEEEEEECCCC-----------CcceEEEEeCCCceE
Confidence            566666654 5555555543  3343  3  22212222334557888998755           111122221111111


Q ss_pred             Ec-CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCC-----CCcceEEEeCCCceEEEEecCCcCeEE
Q psy952           83 IR-HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAI-----QDPRGITLHPGIGYVYFSSWNLQAYIG  156 (573)
Q Consensus        83 ~~-~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~-----~~P~~Iavdp~~g~LYwtd~~~~~~I~  156 (573)
                      +. .....+.++++.+.+..|-.+. ..+.|.+.+..+  ....+..-     ...++++++|...+|+.+.  ..+.|.
T Consensus        80 ~~~~~~~~V~~vawSPdG~~LAs~s-~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs--~DGtVk  154 (588)
T 2j04_A           80 LNSQPVCYPRVCKPSPIDDWMAVLS-NNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGN--EDGELQ  154 (588)
T ss_dssp             STTSCSCCEEEEEECSSSSCEEEEE-TTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEE--TTSEEE
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEc--CCCEEE
Confidence            11 2235678888888766666554 456777777544  11112211     1367899999988888887  356677


Q ss_pred             EEeccCCCc--------EEEEe-cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE----EEEEeCCccceeE
Q psy952          157 KIGMDGSNF--------TRILT-HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK----HIVISGQKVPHVF  223 (573)
Q Consensus       157 r~~ldG~~~--------~~l~~-~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~----~~l~~~~~~~~p~  223 (573)
                      .-++.+...        .++-. ......+...+++.+.+   +.+-...+.|...++++...    +++..+. -....
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h-~~~V~  230 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNAS-RRKIT  230 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCC-SSCCC
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccc-cCcEE
Confidence            777766532        22220 01123466788888654   45556677888888887663    2332222 23455


Q ss_pred             EEeeeCCeEEEecCCCCceEEEeccCC
Q psy952          224 ALTLFEDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       224 ~ia~~~~~lywtd~~~~~I~~~~~~~g  250 (573)
                      +|++.+..|..+-  .++|..-+..++
T Consensus       231 svaFsg~~LASa~--~~tIkLWd~~~~  255 (588)
T 2j04_A          231 DLKIVDYKVVLTC--PGYVHKIDLKNY  255 (588)
T ss_dssp             CEEEETTEEEEEC--SSEEEEEETTTT
T ss_pred             EEEEECCEEEEEe--CCeEEEEECCCC
Confidence            6666544555443  356666654433

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=92.76  E-value=11  Score=40.87  Aligned_cols=16  Identities=31%  Similarity=0.750  Sum_probs=13.3

Q ss_pred             cceEEEeCCCceEEEE
Q psy952          132 PRGITLHPGIGYVYFS  147 (573)
Q Consensus       132 P~~Iavdp~~g~LYwt  147 (573)
                      -.++|+||.++.+|+.
T Consensus       383 w~~~a~dp~~g~~yv~  398 (668)
T 1kv9_A          383 WHSMSFNPGTGLVYIP  398 (668)
T ss_dssp             SSCCEEETTTTEEEEE
T ss_pred             CCcceECCCCCEEEEe
Confidence            4458999999999985

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=92.61  E-value=0.063  Score=44.29  Aligned_cols=36  Identities=31%  Similarity=0.689  Sum_probs=28.5

Q ss_pred             ccccCCCCCccCCccccCCCCccccCCCCceecCCCc
Q psy952          347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGK  383 (573)
Q Consensus       347 ~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~  383 (573)
                      ++|.. .+..|.+.|.+..++|.|.|+.+|.....++
T Consensus        55 ~~C~~-~~~~C~~~C~n~~g~y~C~C~~G~~~~~~g~   90 (114)
T 1aut_L           55 LNCSL-DNGGCTHYCLEEVGWRRCSCAPGYKLGDDLL   90 (114)
T ss_dssp             SSSSS-GGGGCSSEEEECSSSEEEECCTTEEECTTSS
T ss_pred             CcCcC-CCCCCCCEeECCCCCEEeECCCCeeECCCCC
Confidence            35655 4567888999999999999999999866543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=92.39  E-value=8.1  Score=37.14  Aligned_cols=189  Identities=6%  Similarity=-0.039  Sum_probs=99.4

Q ss_pred             EEEEEe-cccEEEEEcCCCce---eecccCCcceEEEEEEcC-CCEEEEEECCCCeEEEEEcCCCcceE--EEcCCCCCc
Q psy952           18 WLIFSN-KYYVRNMSLDATQY---SLVHQDLLNVVAMDFHYK-ENRFYFADVAAKTIYRSRVGSTEKER--VIRHDSHGL   90 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~~---~~~~~~~~~~~~v~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~~~--i~~~~~~~p   90 (573)
                      +|+-+. ...|+..++.....   ..+......+.+|+|.+. .+.++++-...+.|...++.....+.  .+......+
T Consensus        27 ~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V  106 (316)
T 3bg1_A           27 RLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSV  106 (316)
T ss_dssp             EEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCC
T ss_pred             EEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCce
Confidence            444433 45788788764422   112223345788999643 35566666667788888886543222  222233567


Q ss_pred             ceeEEeecC-CcEEEEeCCCCeEEEEEcCCCceeEe---c-cCCCCcceEEEeCCC----------------ceEEEEec
Q psy952           91 EGLAVDWVG-RKLYWLDRHSKQLDVAELDGTNRKTL---K-TAIQDPRGITLHPGI----------------GYVYFSSW  149 (573)
Q Consensus        91 ~glavD~~~-~~LY~td~~~~~I~~~~ldg~~~~~l---~-~~~~~P~~Iavdp~~----------------g~LYwtd~  149 (573)
                      ..|++.+.. +.++.+-...+.|.+.++.+.....+   . ........|++.|..                +.++.+- 
T Consensus       107 ~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-  185 (316)
T 3bg1_A          107 NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-  185 (316)
T ss_dssp             CEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECC-
T ss_pred             EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEe-
Confidence            888888753 55666766778888888765422111   1 222234566666641                2333333 


Q ss_pred             CCcCeEEEEeccCCCc-EEEEecCCCCCCCceEEEeccC---CeEEEEeCCCCeEEEEeCCC
Q psy952          150 NLQAYIGKIGMDGSNF-TRILTHEDDIAWPNALTLDYFT---ERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       150 ~~~~~I~r~~ldG~~~-~~l~~~~~~l~~P~glaiD~~~---~~LYw~D~~~~~I~~~~~dG  207 (573)
                      +....|..-++..... +.+......-.....+++.+..   +.++.+-...++|...+++.
T Consensus       186 s~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          186 GCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             BTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            2233333333332221 1222101222334677777654   24555555667777777654

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=92.23  E-value=0.11  Score=44.60  Aligned_cols=88  Identities=22%  Similarity=0.514  Sum_probs=53.3

Q ss_pred             cccccccCccceee-eccceeecCCCC------------CCCcccCCccccC-CCeeee---------cceeeCCcCCCC
Q psy952          279 AWLTAHRGSTTVAD-MIRSVYLGSGNK------------ENSTCSSSQFRCN-NGKCID---------YHLVCNKESDCE  335 (573)
Q Consensus       279 lCl~~~~~~~~~~C-Cp~~~~l~~d~~------------~~~~C~~~~~~C~-~g~Ci~---------~~~~cd~~~~c~  335 (573)
                      .|+... +...|+| |+.+|....-..            ....|...  .|. ++.|+.         ..|+|...+   
T Consensus        13 ~C~~~~-~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~~~--~C~~~g~C~~~~~~~~~~~~~~~C~C~~---   86 (143)
T 4d90_A           13 ICLPGL-ADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPN--PCHNGGTCEISEAYRGDTFIGYVCKCPR---   86 (143)
T ss_dssp             EEEC------CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTSSC--CCCTTCEEEECCCEETTEECCEEEECCT---
T ss_pred             EeeCCC-CCCCEEeECCCCCCCCCCccCccccccccccccCCcCCCC--CCCCCCEecCCCccccCCCCCeEeECcC---
Confidence            555433 2246899 999997433111            12345432  353 467872         367785444   


Q ss_pred             CCCCCCCCC--CCccccCCCCCccCC--ccccCCCCccccCCCCce
Q psy952          336 DDSDEPLHC--NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYK  377 (573)
Q Consensus       336 d~sde~~~c--~~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~  377 (573)
                       +-... .|  ++++|..   ..|.+  .|.+..+++.|.|+.+|.
T Consensus        87 -G~~G~-~C~~~i~~C~~---~~C~~~~~C~~~~g~~~C~C~~G~~  127 (143)
T 4d90_A           87 -GFNGI-HCQHNINECEV---EPCKNGGICTDLVANYSCECPGEFM  127 (143)
T ss_dssp             -TEEST-TSCEECCTTTT---CCSCTTCEEEEETTEEEEECCTTCB
T ss_pred             -CCcCC-CcccCCCcCCC---CCCCCCCEeECCCCCeEeECCCCCc
Confidence             33333 55  4678864   46776  799999999999999986

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.14  E-value=14  Score=39.37  Aligned_cols=76  Identities=13%  Similarity=0.079  Sum_probs=45.0

Q ss_pred             ceEEEeccCCeEEEEeC--------------------------------CCCeEEEEeCC-CCcEEEEEeCCccceeEEE
Q psy952          179 NALTLDYFTERLYWADA--------------------------------HLDYIASVDLD-GKHKHIVISGQKVPHVFAL  225 (573)
Q Consensus       179 ~glaiD~~~~~LYw~D~--------------------------------~~~~I~~~~~d-G~~~~~l~~~~~~~~p~~i  225 (573)
                      .++++|+..+.||+...                                ..+.|..+|+. |..+-.+.... ....-.+
T Consensus       415 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~  493 (582)
T 1flg_A          415 NPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVL  493 (582)
T ss_dssp             SCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS-CCCSCCE
T ss_pred             CCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC-CCcccce
Confidence            36889988888888642                                13456667764 33322222221 1111224


Q ss_pred             eeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          226 TLFEDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       226 a~~~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      +..++.||+.. ..+.|+.++..+|+.+-..
T Consensus       494 ~tagglvf~g~-~dg~l~A~D~~tG~~lW~~  523 (582)
T 1flg_A          494 ATAGNLVFTGT-GDGYFKAFDAKSGKELWKF  523 (582)
T ss_dssp             EETTTEEEEEC-TTSEEEEEETTTCCEEEEE
T ss_pred             EeCCCEEEEEC-CCCcEEEEECCCCCEEEEe
Confidence            45678888875 4578888898888765433

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=91.84  E-value=0.19  Score=43.13  Aligned_cols=74  Identities=34%  Similarity=0.764  Sum_probs=48.3

Q ss_pred             CCcccCCccccCC-Ceeeec--ceeeCCcCCCCCCCCCCCCCCC--ccc---cCCCCCccCCccccCCC-CccccCCCCc
Q psy952          306 NSTCSSSQFRCNN-GKCIDY--HLVCNKESDCEDDSDEPLHCNV--DEC---AKVETNQCGHKCVDTLT-GYYCECNTGY  376 (573)
Q Consensus       306 ~~~C~~~~~~C~~-g~Ci~~--~~~cd~~~~c~d~sde~~~c~~--~~C---~~~~~~~C~~~C~~~~~-~~~C~C~~~f  376 (573)
                      +++|...  .|.+ +.|+..  +|.|...++.    ... .|..  .+|   .. .+..|.+.|.+..+ +|.|.|+.+|
T Consensus        47 id~C~~~--pC~n~g~C~~~~g~y~C~C~~G~----~G~-~C~~~~~~c~~c~~-~~~~C~~~C~~~~g~~y~C~C~~Gy  118 (142)
T 2c4f_L           47 GDQCASS--PCQNGGSCKDQLQSYICFCLPAF----EGR-NCETHKDDQLICVN-ENGGCEQYCSDHTGTKRSCRCHEGY  118 (142)
T ss_dssp             CCGGGGC--CCCTTCEEEEETTEEEEECCTTE----EST-TSCEEGGGCCSTTT-GGGGCSSEEECCTTSCCEEECCTTE
T ss_pred             cCcCcCC--CcCCCCEEeCCCCCEEeeCCCCc----cCC-ccccCccccccccC-CCCCccCEeECCCCCCEEEECCCCc
Confidence            5667643  3754 689875  7888544443    233 4532  343   22 34667778999998 9999999999


Q ss_pred             eecCCCccccc
Q psy952          377 KLLEDGKACTD  387 (573)
Q Consensus       377 ~c~~~~~c~~~  387 (573)
                      .+..+++.|.+
T Consensus       119 ~l~~dG~~C~~  129 (142)
T 2c4f_L          119 SLLADGVSCTP  129 (142)
T ss_dssp             EECTTSSCEEE
T ss_pred             eECCCCCCCCC
Confidence            98765544444

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.04  E-value=11  Score=35.96  Aligned_cols=213  Identities=11%  Similarity=0.044  Sum_probs=114.2

Q ss_pred             ccEEEEEcCCCceeeccc--CCcceEEEEEEcCCCEEEEEEC----CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeec
Q psy952           25 YYVRNMSLDATQYSLVHQ--DLLNVVAMDFHYKENRFYFADV----AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWV   98 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~--~~~~~~~v~~d~~~~~ly~~d~----~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~   98 (573)
                      +.+.++++.......+..  ....-.++++  .+++||+.--    ....++++++.....+.+......+ .+.+.-..
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-~~~~~~~~  100 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPR-DSLAACAA  100 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCC-BSCEEEEE
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccc-cceeEEEE
Confidence            578888887765544321  1111223333  3788998853    2367899998776555443222111 11222234


Q ss_pred             CCcEEEEeC------CCCeEEEEEcCCCceeEeccCCCCc---ceEEEeCCCceEEEEecC----C----cCeEEEEecc
Q psy952           99 GRKLYWLDR------HSKQLDVAELDGTNRKTLKTAIQDP---RGITLHPGIGYVYFSSWN----L----QAYIGKIGMD  161 (573)
Q Consensus        99 ~~~LY~td~------~~~~I~~~~ldg~~~~~l~~~~~~P---~~Iavdp~~g~LYwtd~~----~----~~~I~r~~ld  161 (573)
                      +++||+.-.      ....++++++....-+.+.. +..|   .++++.  ++.||+.-..    .    ...+++.++.
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~  177 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS-MLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPA  177 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC-CSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC-CcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence            789999743      23578999987665444432 2222   233332  6789987521    1    3467888776


Q ss_pred             CCCcEEEEecCCCCCCCc---eEEEeccCCeEEEEeCC-----CCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEE
Q psy952          162 GSNFTRILTHEDDIAWPN---ALTLDYFTERLYWADAH-----LDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIY  233 (573)
Q Consensus       162 G~~~~~l~~~~~~l~~P~---glaiD~~~~~LYw~D~~-----~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~ly  233 (573)
                      ...-+.+    ..+..|.   ++++  .+++||+.-..     .+.|+++++....=+.+........-.++++.+++||
T Consensus       178 ~~~W~~~----~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~  251 (306)
T 3ii7_A          178 TETWTEL----CPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVY  251 (306)
T ss_dssp             TTEEEEE----CCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEETTEEE
T ss_pred             CCeEEEC----CCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEECCEEE
Confidence            5433332    2233332   3333  37899998332     3568888887654333322110112245666788999


Q ss_pred             EecCC-----CCceEEEeccC
Q psy952          234 WTDWN-----TKSINRADKFN  249 (573)
Q Consensus       234 wtd~~-----~~~I~~~~~~~  249 (573)
                      +.-..     ...|++.+..+
T Consensus       252 v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          252 VLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             EEECBCSSSBCCEEEEEETTT
T ss_pred             EEeCcCCCeeeeeEEEEcCCC
Confidence            87542     23455555433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=90.96  E-value=11  Score=35.81  Aligned_cols=200  Identities=14%  Similarity=0.159  Sum_probs=108.6

Q ss_pred             ccEEEEEcCCCceeeccc--CCcceEEEEEEcCCCEEEEEECC-----CCeEEEEEcCCCc---ceEEEcCCCCC-ccee
Q psy952           25 YYVRNMSLDATQYSLVHQ--DLLNVVAMDFHYKENRFYFADVA-----AKTIYRSRVGSTE---KERVIRHDSHG-LEGL   93 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~--~~~~~~~v~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~---~~~i~~~~~~~-p~gl   93 (573)
                      +.+.++++.......+..  ....-.+++.  .+++||+.--.     ...++++++....   .+.+......+ -.++
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            467888887665443321  1111223333  36889987432     2468999987665   55443222111 1123


Q ss_pred             EEeecCCcEEEEeCC-----CCeEEEEEcCCCceeEeccCCCCc---ceEEEeCCCceEEEEecC----CcCeEEEEecc
Q psy952           94 AVDWVGRKLYWLDRH-----SKQLDVAELDGTNRKTLKTAIQDP---RGITLHPGIGYVYFSSWN----LQAYIGKIGMD  161 (573)
Q Consensus        94 avD~~~~~LY~td~~-----~~~I~~~~ldg~~~~~l~~~~~~P---~~Iavdp~~g~LYwtd~~----~~~~I~r~~ld  161 (573)
                      ++  .+++||+.-..     .+.++++++....-+.+.. +..|   .++++.  ++.||+.-..    ....+++.++.
T Consensus       109 ~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~  183 (301)
T 2vpj_A          109 TT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD-MQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPH  183 (301)
T ss_dssp             EE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE-CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred             EE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCC-CCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCC
Confidence            33  47899998531     3578999987655444432 1111   233333  5789987421    13468888876


Q ss_pred             CCCcEEEEecCCCCCCCc---eEEEeccCCeEEEEeCC-----CCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEE
Q psy952          162 GSNFTRILTHEDDIAWPN---ALTLDYFTERLYWADAH-----LDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIY  233 (573)
Q Consensus       162 G~~~~~l~~~~~~l~~P~---glaiD~~~~~LYw~D~~-----~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~ly  233 (573)
                      ...-+.+    ..+..|.   ++++  .+++||+.-..     .+.|+.+++....-+.+........-.++++.+++||
T Consensus       184 ~~~W~~~----~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~  257 (301)
T 2vpj_A          184 TGHWTNV----TPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLY  257 (301)
T ss_dssp             TTEEEEE----CCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEE
T ss_pred             CCcEEeC----CCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEE
Confidence            5433333    2233332   3333  37899998543     4578899887655444432110112235666788898


Q ss_pred             EecC
Q psy952          234 WTDW  237 (573)
Q Consensus       234 wtd~  237 (573)
                      +.-.
T Consensus       258 v~GG  261 (301)
T 2vpj_A          258 AIAG  261 (301)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            8743

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=90.86  E-value=0.067  Score=48.63  Aligned_cols=73  Identities=32%  Similarity=0.789  Sum_probs=31.4

Q ss_pred             CCcccCCccccCC-Ceeeec--ceeeCCcCCCCCCCCCCCCCC--C-ccccCCCCCccCCccccCCCCccccCCCCceec
Q psy952          306 NSTCSSSQFRCNN-GKCIDY--HLVCNKESDCEDDSDEPLHCN--V-DECAKVETNQCGHKCVDTLTGYYCECNTGYKLL  379 (573)
Q Consensus       306 ~~~C~~~~~~C~~-g~Ci~~--~~~cd~~~~c~d~sde~~~c~--~-~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~  379 (573)
                      ++.|...  .|.+ +.|+..  +|.|.+.++..    .. .|.  + ++|.. .+..|.+.|.+..++|.|.|+.+|.+.
T Consensus        42 ideC~~~--pC~ngg~C~n~~g~y~C~C~~Gf~----G~-~Ce~~i~deC~~-~~~~C~~~C~n~~gsy~C~C~~Gy~l~  113 (195)
T 1nfu_B           42 GDQCETS--PCQNQGKCKDGLGEYTCTCLEGFE----GK-NCELFTRKLCSL-DNGDCDQFCHEEQNSVVCSCARGYTLA  113 (195)
T ss_dssp             ----------------------------------------------CCGGGT-GGGGCSSEEEEETTEEEEECCTTEEEC
T ss_pred             CcccCCC--CCCCCCEeECCCCCeeEeCCCCce----ec-cccccccccccC-CCCCCCCEeECCCCCeEEECCCCceeC
Confidence            4566643  3643 578764  67886544443    33 564  3 67876 567798899999999999999999987


Q ss_pred             CCCcccc
Q psy952          380 EDGKACT  386 (573)
Q Consensus       380 ~~~~c~~  386 (573)
                      .+++-|.
T Consensus       114 ~dG~~C~  120 (195)
T 1nfu_B          114 DNGKACI  120 (195)
T ss_dssp             TTSSCEE
T ss_pred             CCCCccc
Confidence            6554443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=90.80  E-value=14  Score=36.76  Aligned_cols=179  Identities=9%  Similarity=-0.118  Sum_probs=89.0

Q ss_pred             cccEEEEEcCCC-ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE-EEc-----------------
Q psy952           24 KYYVRNMSLDAT-QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER-VIR-----------------   84 (573)
Q Consensus        24 ~~~I~~i~l~g~-~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-i~~-----------------   84 (573)
                      .+.|+..++... ....+......+.+|+|.+.+..++++-...+.|...++....... +..                 
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            567888887543 3333334445678999999877777777778889888876532110 000                 


Q ss_pred             -------CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEec------------------cCCCCcceEEEe
Q psy952           85 -------HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLK------------------TAIQDPRGITLH  138 (573)
Q Consensus        85 -------~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~------------------~~~~~P~~Iavd  138 (573)
                             ........+++....++..++-...+.|.+.++..... ..+.                  .......+....
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH  324 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred             eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence                   00123334444433444445555566676666543221 1111                  011112333444


Q ss_pred             CCCceEEEEecCCcCeEEEEeccC-CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952          139 PGIGYVYFSSWNLQAYIGKIGMDG-SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       139 p~~g~LYwtd~~~~~~I~r~~ldG-~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      |..+.+|.+-.+....|...++.. .....+.   ..-.....|++.+++..|-.+.  .+.|..+++.|
T Consensus       325 ~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~---~~~~~V~svafspdG~~LA~as--~~Gv~lvrL~g  389 (393)
T 4gq1_A          325 PRYMDYFATAHSQHGLIQLINTYEKDSNSIPI---QLGMPIVDFCWHQDGSHLAIAT--EGSVLLTRLMG  389 (393)
T ss_dssp             SSCTTEEEEEETTTTEEEEEETTCTTCCEEEE---ECSSCEEEEEECTTSSEEEEEE--SSEEEEEEEGG
T ss_pred             cCCCCEEEEEECCCCEEEEEECCCCcEEEEec---CCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEEeC
Confidence            444555555434456666666553 3333333   1112346788887666665543  33444444443

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=90.32  E-value=0.089  Score=44.80  Aligned_cols=73  Identities=32%  Similarity=0.792  Sum_probs=30.8

Q ss_pred             CCcccCCccccCC-Ceeeec--ceeeCCcCCCCCCCCCCCCCC--C-ccccCCCCCccCCccccCCCCccccCCCCceec
Q psy952          306 NSTCSSSQFRCNN-GKCIDY--HLVCNKESDCEDDSDEPLHCN--V-DECAKVETNQCGHKCVDTLTGYYCECNTGYKLL  379 (573)
Q Consensus       306 ~~~C~~~~~~C~~-g~Ci~~--~~~cd~~~~c~d~sde~~~c~--~-~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~  379 (573)
                      ++.|...+  |.+ +.|+..  +|.|...++..    .. .|.  + ++|.. .+..|.+.|.+..+++.|.|+.+|.+.
T Consensus        42 ~d~C~~~p--C~n~g~C~~~~~~y~C~C~~G~~----G~-~C~~~i~d~C~~-~~~~C~~~C~~~~g~y~C~C~~Gy~l~  113 (134)
T 2vh0_B           42 GDQCETSP--CQNQGKCKDGLGEYTCTCLEGFE----GK-NCELFTRKLCSL-DNGDCDQFCHEEQNSVVCSCARGYTLA  113 (134)
T ss_dssp             ----------------------------------------------CCGGGT-GGGGCSSEEEEETTEEEEECCTTEEEC
T ss_pred             cCcCCCCC--CCCcCCcccCCCCEEeeCCCCcc----CC-ccccCCCCcccc-CCCCCCCEeECCCCCEEEECCCCcEEC
Confidence            44565432  543 567654  67775444332    33 453  3 56866 556788899999999999999999987


Q ss_pred             CCCcccc
Q psy952          380 EDGKACT  386 (573)
Q Consensus       380 ~~~~c~~  386 (573)
                      .+++.|.
T Consensus       114 ~~g~~C~  120 (134)
T 2vh0_B          114 DNGKACI  120 (134)
T ss_dssp             TTSSCEE
T ss_pred             CCCCccC
Confidence            6554443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=90.04  E-value=25  Score=38.34  Aligned_cols=17  Identities=24%  Similarity=0.540  Sum_probs=14.0

Q ss_pred             cceEEEeCCCceEEEEe
Q psy952          132 PRGITLHPGIGYVYFSS  148 (573)
Q Consensus       132 P~~Iavdp~~g~LYwtd  148 (573)
                      -.++|+||.++.||+..
T Consensus       391 w~~~a~dp~~~~~yv~~  407 (689)
T 1yiq_A          391 WQPMSYNPDTGLVYIPA  407 (689)
T ss_dssp             SSCCEEETTTTEEEEEE
T ss_pred             CCcceECCCCCEEEEec
Confidence            34699999999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=89.91  E-value=17  Score=36.21  Aligned_cols=96  Identities=8%  Similarity=-0.117  Sum_probs=61.5

Q ss_pred             cccEEEEEcCCCcee--ec---ccC-CcceEEEEEEc-------CCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           24 KYYVRNMSLDATQYS--LV---HQD-LLNVVAMDFHY-------KENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        24 ~~~I~~i~l~g~~~~--~~---~~~-~~~~~~v~~d~-------~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      .+.|+..++......  .+   ..+ ...+.+|+|.+       .++++..+-...+.|+..++........+...-..+
T Consensus       110 d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v  189 (393)
T 4gq1_A          110 DNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPG  189 (393)
T ss_dssp             TSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCE
T ss_pred             CCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCc
Confidence            466777777654321  11   122 34478999975       356788887788889888875443322222223467


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDG  119 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg  119 (573)
                      ..+++.+.+.+++.+-...+.|.+.++..
T Consensus       190 ~~v~~~p~~~~~l~~~~~d~~v~~wd~~t  218 (393)
T 4gq1_A          190 ISVQFRPSNPNQLIVGERNGNIRIFDWTL  218 (393)
T ss_dssp             EEEEEETTEEEEEEEEETTSEEEEEETTC
T ss_pred             EEEEECCCCCceEEecCCCCEEEEEECCC
Confidence            78888876666777766778898888754

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=89.51  E-value=0.26  Score=47.67  Aligned_cols=46  Identities=39%  Similarity=0.881  Sum_probs=35.9

Q ss_pred             CccccCCCCCccCCccccCCCCccccCCCCceecCCCccccccccc
Q psy952          346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC  391 (573)
Q Consensus       346 ~~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~C  391 (573)
                      ++||....+..|.+.|.+..+++.|+|..+|++..+.+.|...++|
T Consensus         2 ~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c   47 (283)
T 3f1s_B            2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC   47 (283)
T ss_dssp             -CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTT
T ss_pred             CCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCcccccccc
Confidence            4677762278999999999999999999999998766655555544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=89.39  E-value=11  Score=39.60  Aligned_cols=182  Identities=7%  Similarity=-0.014  Sum_probs=101.7

Q ss_pred             EEEEEe-cccEEEEEcCCCcee------------ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cceEEE
Q psy952           18 WLIFSN-KYYVRNMSLDATQYS------------LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EKERVI   83 (573)
Q Consensus        18 ~l~~s~-~~~I~~i~l~g~~~~------------~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~i~   83 (573)
                      +|+-+. ...|+..++......            .+......+.+|+|.+. +. .++-...+.|...++... .....+
T Consensus       227 ~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~-lasgs~DgtV~lWD~~~~~~~~~~~  304 (524)
T 2j04_B          227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TT-VVCGFKNGFVAEFDLTDPEVPSFYD  304 (524)
T ss_dssp             EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SE-EEEEETTSEEEEEETTBCSSCSEEE
T ss_pred             eEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-Ce-EEEEeCCCEEEEEECCCCCCceEEe
Confidence            444333 467888887643210            11112245778999753 44 555567789999998743 332233


Q ss_pred             cCCCCCcceeEEee-cCC-cEEEEeCCCCeEEEEEcCCC-ceeEeccCC--CCcceEEEeCCCceEEEEecCCcCeEEEE
Q psy952           84 RHDSHGLEGLAVDW-VGR-KLYWLDRHSKQLDVAELDGT-NRKTLKTAI--QDPRGITLHPGIGYVYFSSWNLQAYIGKI  158 (573)
Q Consensus        84 ~~~~~~p~glavD~-~~~-~LY~td~~~~~I~~~~ldg~-~~~~l~~~~--~~P~~Iavdp~~g~LYwtd~~~~~~I~r~  158 (573)
                      ...-..+.+|++.+ ..+ +++.+-+..+.|.+.++... ...++....  .....|+++|.. ..+.+-. ....|...
T Consensus       305 ~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~-~d~tv~lw  382 (524)
T 2j04_B          305 QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQI-YSYIYSD-GASSLRAV  382 (524)
T ss_dssp             ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTT-TEEEEEC-SSSEEEEE
T ss_pred             ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCc-CeEEEeC-CCCcEEEE
Confidence            33335677774332 233 78888888889999888543 223333222  235789999954 4455432 24456555


Q ss_pred             eccCCC-cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952          159 GMDGSN-FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       159 ~ldG~~-~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      ++.... ...+.   ........|++.+.+..| .+-...+.|...++.+
T Consensus       383 d~~~~~~~~~l~---gH~~~V~sva~Sp~g~~l-~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          383 PSRAAFAVHPLV---SRETTITAIGVSRLHPMV-LAGSADGSLIITNAAR  428 (524)
T ss_dssp             ETTCTTCCEEEE---ECSSCEEEEECCSSCCBC-EEEETTTEEECCBSCS
T ss_pred             ECcccccceeee---cCCCceEEEEeCCCCCeE-EEEECCCEEEEEechH
Confidence            554332 34444   223345788888655444 4444566666666543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=89.27  E-value=16  Score=35.02  Aligned_cols=117  Identities=8%  Similarity=0.004  Sum_probs=67.9

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce--EEEcCCCCCcceeEEeec-CCcEEEEeCCCCeEEEEEcCCCc
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE--RVIRHDSHGLEGLAVDWV-GRKLYWLDRHSKQLDVAELDGTN  121 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~i~~~~~~~p~glavD~~-~~~LY~td~~~~~I~~~~ldg~~  121 (573)
                      ..+..|+|++..+.| .+-...+.|...++......  ..+......+..|++.+. .++++.+-+..+.|.+-++....
T Consensus        14 ~~V~~v~~s~~g~~l-asgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~   92 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRL-ATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT   92 (316)
T ss_dssp             CCEEEEEECGGGCEE-EEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred             CeEEEeeEcCCCCEE-EEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence            346789999755544 45456677888887643321  122222356777877532 34555666667888888886532


Q ss_pred             ---eeEeccCCCCcceEEEeCCC-ceEEEEecCCcCeEEEEeccCC
Q psy952          122 ---RKTLKTAIQDPRGITLHPGI-GYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus       122 ---~~~l~~~~~~P~~Iavdp~~-g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                         ..++.........|+++|.. +.++.+- +....|...++...
T Consensus        93 ~~~~~~~~~h~~~V~~v~~~p~~~g~~lasg-s~D~~i~lwd~~~~  137 (316)
T 3bg1_A           93 WEKSHEHAGHDSSVNSVCWAPHDYGLILACG-SSDGAISLLTYTGE  137 (316)
T ss_dssp             CCEEEEECCCSSCCCEEEECCTTTCSCEEEE-CSSSCEEEEEECSS
T ss_pred             ceEEEEccCCCCceEEEEECCCCCCcEEEEE-cCCCCEEEEecCCC
Confidence               12232344567899999863 4444443 23455555555443

>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens}

Probab=89.19  E-value=24  Score=38.32  Aligned_cols=161  Identities=10%  Similarity=0.050  Sum_probs=84.7

Q ss_pred             EEECCCCeEEEEEcCCCcceEEEcC-C---CCCcceeEEeecCC-cEEEEeCC-----CCeEEEEEcCCCceeEeccCCC
Q psy952           61 FADVAAKTIYRSRVGSTEKERVIRH-D---SHGLEGLAVDWVGR-KLYWLDRH-----SKQLDVAELDGTNRKTLKTAIQ  130 (573)
Q Consensus        61 ~~d~~~~~I~~~~~~g~~~~~i~~~-~---~~~p~glavD~~~~-~LY~td~~-----~~~I~~~~ldg~~~~~l~~~~~  130 (573)
                      ++....+.|+|..-.|...+.+... .   +....+|++|+.+. +||++-..     .+.|++..-.|..-+.+... .
T Consensus        59 ~~~t~~ggvyrS~DgG~TW~~v~~~~~~~~~~~~~~IavdP~dp~~vyvag~~~~~~~~g~v~rS~DgG~TW~~~~~p-~  137 (685)
T 3f6k_A           59 IMTFGQSKLYRSEDYGKNFKDITDLINNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLP-F  137 (685)
T ss_dssp             ----CEEEEEEESSTTSSCEECGGGGTTCCBCGGGCEEECSTTCCCEEEEECCCTTCSSCEEEEESSTTSSCEEEECS-S
T ss_pred             EEeecCCeEEEEeCCCCCceECcCCCCCCcccceeEEEECCCCCCEEEEEEeccCCCCCceEEEECCCCceeEeccCC-C
Confidence            3334455677766555555544321 1   12335799998654 78888642     46777766556544433321 1


Q ss_pred             Cc-ceEEEeCCC-ceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC-------C--e
Q psy952          131 DP-RGITLHPGI-GYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL-------D--Y  199 (573)
Q Consensus       131 ~P-~~Iavdp~~-g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~-------~--~  199 (573)
                      .| ..|+++|.+ +.||+..  ....|++..=.|..=+.+.   ..+.   ...+. ..+.|||.-...       +  .
T Consensus       138 ~~~~~l~~~P~~~~~l~a~~--~~~gly~S~DgG~TW~~i~---~~v~---~~~f~-~~~~Iy~~~~~~~~~~~~~g~l~  208 (685)
T 3f6k_A          138 HPLTQMMYSPQNSDYLLALS--TENGLWVSKNFGGKWEEIH---KAVC---LAKWG-SDNTIFFTTYANGSCKADLGALE  208 (685)
T ss_dssp             CBSSCCEEETTEEEEEEEEB--TTCCEEEESSTTSSEEEEE---SSEE---EEEEC-STTCEEEEECSSSCTTTTTTSEE
T ss_pred             CCceEEEEecCCCCEEEEEE--CCCCEEEEeCCCCCcEEee---cCcc---ccccC-CCCeEEEEeeccccccCCCCceE
Confidence            23 379999965 4566664  2457888655555544444   3331   22333 246788764221       1  2


Q ss_pred             EEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEec
Q psy952          200 IASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTD  236 (573)
Q Consensus       200 I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd  236 (573)
                      |.+.+--|...+++.     .+..++++.+++||++-
T Consensus       209 L~~S~D~g~t~~~l~-----~~i~~f~~~~~yl~va~  240 (685)
T 3f6k_A          209 LWRTSDLGKSFKTIG-----VKIYSFGLGGRFLFASV  240 (685)
T ss_dssp             EEEESSTTSSCEEEE-----EEEEEEEEETTEEEEEE
T ss_pred             EEEecCCCCCceEee-----ccceeeeeeeeEEEEEE
Confidence            333322233333333     24567777888888863

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=89.19  E-value=30  Score=38.17  Aligned_cols=231  Identities=13%  Similarity=0.108  Sum_probs=120.2

Q ss_pred             EecccEEEEEcCCCceeeccc------------CCcceEEEEEEcC-CCEEEEEECC------CCeEEEEEcCCCcceEE
Q psy952           22 SNKYYVRNMSLDATQYSLVHQ------------DLLNVVAMDFHYK-ENRFYFADVA------AKTIYRSRVGSTEKERV   82 (573)
Q Consensus        22 s~~~~I~~i~l~g~~~~~~~~------------~~~~~~~v~~d~~-~~~ly~~d~~------~~~I~~~~~~g~~~~~i   82 (573)
                      +....|++-.=.|...+.+..            ....+.+|++|+. .+.||++-..      ...|+|..=.|...+.+
T Consensus        40 ~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~  119 (763)
T 3a0f_A           40 TDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQY  119 (763)
T ss_dssp             ESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEE
T ss_pred             eccCcEEEECCCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEecccccCCCCceEEEECCCCCCceec
Confidence            335667766555655554433            2234789999985 4677876532      35677765555555544


Q ss_pred             EcC-CC-----CCc--ceeEEeecC-CcEEEEeCCCCeEEEEEcCCCceeEecc---CC---CCcceEEEeCCC-ceEEE
Q psy952           83 IRH-DS-----HGL--EGLAVDWVG-RKLYWLDRHSKQLDVAELDGTNRKTLKT---AI---QDPRGITLHPGI-GYVYF  146 (573)
Q Consensus        83 ~~~-~~-----~~p--~glavD~~~-~~LY~td~~~~~I~~~~ldg~~~~~l~~---~~---~~P~~Iavdp~~-g~LYw  146 (573)
                      ... .+     .+.  ..|++++.. +.||..- ..+.|++..-.|..=+.+..   ..   .....|+++|.. +.||+
T Consensus       120 ~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~-~~~~l~~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~  198 (763)
T 3a0f_A          120 RSPVPMGANDMGRNGGERLAVNPHWTDELWFGS-RTQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYV  198 (763)
T ss_dssp             ECSSCCCTTSTTTTSBCCEEECTTSTTCEEEEC-SSSCEEEESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEE
T ss_pred             cCCcccCccccCccccceEEECCCCCCEEEEEe-CCCcEEEECCCCcCccccccCcccCCCccceEEEEECCCCCCEEEE
Confidence            321 11     112  368998764 5676654 33567765544554443331   11   124577888864 46888


Q ss_pred             EecCCcCeEEEEeccCCCcEEEEecCC-------------------CCCCCceEEEeccCCeEEEEe--------CCCCe
Q psy952          147 SSWNLQAYIGKIGMDGSNFTRILTHED-------------------DIAWPNALTLDYFTERLYWAD--------AHLDY  199 (573)
Q Consensus       147 td~~~~~~I~r~~ldG~~~~~l~~~~~-------------------~l~~P~glaiD~~~~~LYw~D--------~~~~~  199 (573)
                      +.... ..|++..=.|..=+.+.....                   ....|..+++.+ .++||++-        ...+.
T Consensus       199 ~~~~~-g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~g~l~~~~~~~~~~~~~~~g~  276 (763)
T 3a0f_A          199 ASHAV-GGLWVTWDGGANWSQVGGQPTQWSDWTKSIVAASGTAIQSSGPLPIKIALGK-NGRLYITYSDAPGPWGVLYGE  276 (763)
T ss_dssp             EESST-TCEEEESSSSSSCEECTTCCCSCCHHHHHHHHHHCCCCSSSSCEEEEEEECT-TSCEEEEEESSCSSSCCCCEE
T ss_pred             EEeCC-CeEEEECCCCCCccccCCCccccccccccccccccccccCCCCcceeEEECC-CCcEEEEeccCCCCCCCccee
Confidence            76421 157766544554333220000                   112345567765 78888872        13457


Q ss_pred             EEEEeCCCCcEEEEEeCCcccee---------------EEEeee-CCeEEEecCC---CCceEEEeccCCcceEEE
Q psy952          200 IASVDLDGKHKHIVISGQKVPHV---------------FALTLF-EDHIYWTDWN---TKSINRADKFNGRDYRVL  256 (573)
Q Consensus       200 I~~~~~dG~~~~~l~~~~~~~~p---------------~~ia~~-~~~lywtd~~---~~~I~~~~~~~g~~~~~l  256 (573)
                      |++.+-.|..-+.+.........               .+|++. .+.||..-..   ...|++. ...|+.-+.+
T Consensus       277 v~rS~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~~gg~~~i~v~~~~~v~~~~~~~~~~~~l~~S-~DgG~tW~~~  351 (763)
T 3a0f_A          277 VWSYDPTNGNWKHITPSREGANTYPAPTGNKKVVPGGWNGISVGNGDTVVVSTLDANGEDSVYLS-RDAGNSWKDL  351 (763)
T ss_dssp             EEEEETTTTEEEECCTTSSSSCEESCCCCCTTSCCCEEEEEEECSTBCEEEEEESCTTSCCEEEE-SBTTSSEEEH
T ss_pred             EEEEeCCCCceEECCCCCCCCccccccccccccccCCceeEEEcCCCeEEEEecCCCCCCCEEEE-CCCCCCcccC
Confidence            88776555443333211100011               367774 5677776531   1455554 2345544444

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=89.06  E-value=0.11  Score=46.82  Aligned_cols=88  Identities=20%  Similarity=0.482  Sum_probs=57.6

Q ss_pred             cceee-eccceeecCCCCCCCcccCCccccC-CCeee----ec--ceeeCCcCCCCCCC-CCCCCCC---CccccCCCCC
Q psy952          288 TTVAD-MIRSVYLGSGNKENSTCSSSQFRCN-NGKCI----DY--HLVCNKESDCEDDS-DEPLHCN---VDECAKVETN  355 (573)
Q Consensus       288 ~~~~C-Cp~~~~l~~d~~~~~~C~~~~~~C~-~g~Ci----~~--~~~cd~~~~c~d~s-de~~~c~---~~~C~~~~~~  355 (573)
                      .+|+| |+.||.+......+++|...+  |. ++.|+    ..  +|+|...++..... +.. .|.   +++|..    
T Consensus        72 g~y~C~C~~G~~g~~~~C~~d~C~~~~--C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~-~C~~~~~~~C~~----  144 (186)
T 1z1y_A           72 NMYXCGCIEGYTLXEDTCVLDVCQYXN--CGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEX-XCTXTGETACQL----  144 (186)
T ss_dssp             CSEEEEECTTEEEETTEEEEGGGTTCC--CCTTEEEEEEEETTEEEEEEEECTEEEEETTTTT-EEEEEECCCCCC----
T ss_pred             CCEECCCCCCCccCCCCCCCCcCcCCC--CCCCCEEeeCCcCCCCCceEECCCCCcccCCCCC-cceEcCCCcccc----
Confidence            46899 999998865422256776553  75 57788    32  67786554443211 222 443   256642    


Q ss_pred             cc-CC--ccccCCCCccccCCCCceecCCC
Q psy952          356 QC-GH--KCVDTLTGYYCECNTGYKLLEDG  382 (573)
Q Consensus       356 ~C-~~--~C~~~~~~~~C~C~~~f~c~~~~  382 (573)
                      .| .+  .|.+..++|.|.|+.+|......
T Consensus       145 ~C~~~~~~C~n~~g~y~C~C~~G~~g~~~~  174 (186)
T 1z1y_A          145 XCNTDNEVCXNVEGVYXCQCMEGFTFDXEX  174 (186)
T ss_dssp             CCCTTTEEEEEETTEEEEEECTTCEEETTT
T ss_pred             cccccCcceecCCCCeeeECCCCCccCccc
Confidence            68 44  89999999999999999876544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=89.03  E-value=26  Score=37.26  Aligned_cols=16  Identities=13%  Similarity=0.355  Sum_probs=13.6

Q ss_pred             ceEEEeCCCceEEEEe
Q psy952          133 RGITLHPGIGYVYFSS  148 (573)
Q Consensus       133 ~~Iavdp~~g~LYwtd  148 (573)
                      .++|+||.++.||+..
T Consensus       415 ~~~a~dp~~g~~yv~~  430 (582)
T 1flg_A          415 NPMAYSQDTGLFYVPA  430 (582)
T ss_dssp             SCCEECTTTCCEEEEE
T ss_pred             CCceECCCCCEEEEec
Confidence            4789999999999865

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.65  E-value=18  Score=35.03  Aligned_cols=190  Identities=10%  Similarity=0.035  Sum_probs=95.5

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeE
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKT  124 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~  124 (573)
                      .+.+|++.. .+.+|++.. .+.|+|..-.|...+.+.........+|+++. .+.+|... ..+.|++..-. |..-+.
T Consensus       123 ~~~~i~~~~-~~~~~~~~~-~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~G~~~~S~d~gG~tW~~  198 (327)
T 2xbg_A          123 SPRLIKALG-NGSAEMITN-VGAIYRTKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVS-SRGSFYSTWEPGQTAWEP  198 (327)
T ss_dssp             CEEEEEEEE-TTEEEEEET-TCCEEEESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEE-TTSSEEEEECTTCSSCEE
T ss_pred             CeEEEEEEC-CCCEEEEeC-CccEEEEcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEE-CCCcEEEEeCCCCCceeE
Confidence            466777653 567877654 55687755445555544432223566777775 34555444 34667776543 444333


Q ss_pred             ec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-CCCcEEEEecCCCCCC---CceEEEeccCCeEEEEeCCCCe
Q psy952          125 LK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GSNFTRILTHEDDIAW---PNALTLDYFTERLYWADAHLDY  199 (573)
Q Consensus       125 l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~~~~~l~~~~~~l~~---P~glaiD~~~~~LYw~D~~~~~  199 (573)
                      +. ........|++++ .+.+|....  ...|++...| |..-+.+.  ...+..   ...|++++ .+.||.+-. .+.
T Consensus       199 ~~~~~~~~~~~~~~~~-~g~~~~~~~--~G~~~~s~~D~G~tW~~~~--~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~  271 (327)
T 2xbg_A          199 HNRTTSRRLHNMGFTP-DGRLWMIVN--GGKIAFSDPDNSENWGELL--SPLRRNSVGFLDLAYRT-PNEVWLAGG-AGA  271 (327)
T ss_dssp             EECCSSSCEEEEEECT-TSCEEEEET--TTEEEEEETTEEEEECCCB--CTTSSCCSCEEEEEESS-SSCEEEEES-TTC
T ss_pred             CCCCCCCccceeEECC-CCCEEEEeC--CceEEEecCCCCCeeEecc--CCcccCCcceEEEEecC-CCEEEEEeC-CCe
Confidence            32 2223467888887 456666552  3456665445 32211111  110111   13455553 567777643 455


Q ss_pred             EEEEeCCCCcEEEEEeCCcc-ceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952          200 IASVDLDGKHKHIVISGQKV-PHVFALTLFEDHIYWTDWNTKSINRAD  246 (573)
Q Consensus       200 I~~~~~dG~~~~~l~~~~~~-~~p~~ia~~~~~lywtd~~~~~I~~~~  246 (573)
                      |++..-.|..-+.+.....+ ...+.|++.++..+|+-...+.|++.+
T Consensus       272 i~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          272 LLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEEESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEEC
T ss_pred             EEEeCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEc
Confidence            65543334333333211101 234566664444445545566777664

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=88.40  E-value=0.25  Score=42.63  Aligned_cols=46  Identities=30%  Similarity=0.754  Sum_probs=32.3

Q ss_pred             CccccCCCCCccCC--ccccCCCCccccCCCCceecCCCcccccccccCCCCCCC
Q psy952          346 VDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVC  398 (573)
Q Consensus       346 ~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~C~~~~~~~  398 (573)
                      +++|..   .+|.+  .|.+..+++.|.|+.+|.   +. -|.++++|...+..+
T Consensus        48 ideC~~---~pC~n~g~C~~~~~~y~C~C~~G~~---G~-~C~~~deC~~~~~~C   95 (146)
T 1x7a_L           48 GDQCEP---NPCLNGGLCKDDINSYECWCQVGFE---GK-NCELDATCNIKNGRC   95 (146)
T ss_dssp             --CCSS---CSSCTTCEEEECSSCEEEECCSSEE---ST-TTCEECCTTSGGGSC
T ss_pred             cCcCCC---CCCCCCCEeECCCCCEEEecCCCCc---CC-cCCCCccccCCCCCC
Confidence            566754   56877  799999999999999997   43 455668887544333

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=88.16  E-value=0.33  Score=38.07  Aligned_cols=72  Identities=15%  Similarity=0.314  Sum_probs=40.8

Q ss_pred             ceee-eccceeecCCCCCCCcccCCccccCCCeeeecceeeCCcCCCCCCCCCCCCC---CCccccCCCCCccCC--ccc
Q psy952          289 TVAD-MIRSVYLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHC---NVDECAKVETNQCGH--KCV  362 (573)
Q Consensus       289 ~~~C-Cp~~~~l~~d~~~~~~C~~~~~~C~~g~Ci~~~~~cd~~~~c~d~sde~~~c---~~~~C~~~~~~~C~~--~C~  362 (573)
                      +|+| |+.+|.+..-  .+++|...  .|.++   ...|.|...++..       .|   ++++|..   .+|.+  .|.
T Consensus         1 sy~C~C~~g~~g~~c--~~~~c~~~--pC~n~---~~~y~C~C~~G~~-------~C~~~~~~~C~~---~pC~ngg~C~   63 (91)
T 1tpg_A            1 SYQVICRDEKTQMIY--QQHQSWLR--PVLRS---NRVEYCWCNSGRA-------QCHSVPVKSCSE---PRCFNGGTCQ   63 (91)
T ss_dssp             CCCCCCBCSSSCCBC--CSSCEEEE--ECSSS---SCEEEEECSSSCC-------BCCEECEEECSS---CCSCTTCEEE
T ss_pred             CeeeECCCCCcCCeE--CCCcccCC--ccccC---CCCcEeECCCCCc-------ccccCcCCcccC---CCCCCCCEee
Confidence            3678 8888865321  13344222  12222   2345564433332       23   2566754   45876  688


Q ss_pred             cCC--CCccccCCCCce
Q psy952          363 DTL--TGYYCECNTGYK  377 (573)
Q Consensus       363 ~~~--~~~~C~C~~~f~  377 (573)
                      +..  +.+.|.|+.+|.
T Consensus        64 ~~~~~~~~~C~C~~G~~   80 (91)
T 1tpg_A           64 QALYFSDFVCQCPEGFA   80 (91)
T ss_dssp             EESSSSCEEEECCTTCB
T ss_pred             cCCCCCCeEeECCCCCc
Confidence            776  889999999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=87.43  E-value=31  Score=36.15  Aligned_cols=193  Identities=7%  Similarity=-0.099  Sum_probs=102.2

Q ss_pred             CcceEEEEEEcC-----CCEEEEEECCCCeEEEEEcCCCcce-----------EEEcCCCCCcceeEEeecCCcEEEEeC
Q psy952           44 LLNVVAMDFHYK-----ENRFYFADVAAKTIYRSRVGSTEKE-----------RVIRHDSHGLEGLAVDWVGRKLYWLDR  107 (573)
Q Consensus        44 ~~~~~~v~~d~~-----~~~ly~~d~~~~~I~~~~~~g~~~~-----------~i~~~~~~~p~glavD~~~~~LY~td~  107 (573)
                      ...+..|+|.+.     .+.+..+-...+.|...++......           ..+...-..+..+++..  ..+.++-.
T Consensus       207 ~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~~~lasgs  284 (524)
T 2j04_B          207 FGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--PTTVVCGF  284 (524)
T ss_dssp             CCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--SSEEEEEE
T ss_pred             CCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--CCeEEEEe
Confidence            355789999985     2356665566778888888653211           11221223455566543  34555666


Q ss_pred             CCCeEEEEEcCCC-cee-EeccCCCCcceEE-EeCCCc-eEEEEecCCcCeEEEEeccC-CCcEEEEecCCCCCCCceEE
Q psy952          108 HSKQLDVAELDGT-NRK-TLKTAIQDPRGIT-LHPGIG-YVYFSSWNLQAYIGKIGMDG-SNFTRILTHEDDIAWPNALT  182 (573)
Q Consensus       108 ~~~~I~~~~ldg~-~~~-~l~~~~~~P~~Ia-vdp~~g-~LYwtd~~~~~~I~r~~ldG-~~~~~l~~~~~~l~~P~gla  182 (573)
                      ..+.|.+.++... ... ++........+|+ ..+..+ .++.|-. ....|..-++.. ....++.. .........++
T Consensus       285 ~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S-~D~tvklWD~~~~~~~~~~~~-~~~~~~v~~v~  362 (524)
T 2j04_B          285 KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA-VDGYFYIFNPKDIATTKTTVS-RFRGSNLVPVV  362 (524)
T ss_dssp             TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE-TTSEEEEECGGGHHHHCEEEE-ECSCCSCCCEE
T ss_pred             CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec-cCCeEEEEECCCCCccccccc-ccccCcccceE
Confidence            7789999998743 322 2333444567774 234355 6666653 345666666542 22223331 11111246788


Q ss_pred             EeccCCeEEEEeCCCCeEEEEeCCCCc-EEEEEeCCccceeEEEeee-CCeEEEecCCCCceE
Q psy952          183 LDYFTERLYWADAHLDYIASVDLDGKH-KHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSIN  243 (573)
Q Consensus       183 iD~~~~~LYw~D~~~~~I~~~~~dG~~-~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~  243 (573)
                      +.+... .+.+-...+.|...++.... ...+...  .....+|++. .+.++.+-...+.|.
T Consensus       363 fsp~~~-~l~s~~~d~tv~lwd~~~~~~~~~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv~  422 (524)
T 2j04_B          363 YCPQIY-SYIYSDGASSLRAVPSRAAFAVHPLVSR--ETTITAIGVSRLHPMVLAGSADGSLI  422 (524)
T ss_dssp             EETTTT-EEEEECSSSEEEEEETTCTTCCEEEEEC--SSCEEEEECCSSCCBCEEEETTTEEE
T ss_pred             eCCCcC-eEEEeCCCCcEEEEECcccccceeeecC--CCceEEEEeCCCCCeEEEEECCCEEE
Confidence            886544 45555566677777765433 2333322  3355677763 233334433444443

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=87.18  E-value=0.36  Score=35.88  Aligned_cols=34  Identities=26%  Similarity=0.527  Sum_probs=24.8

Q ss_pred             CccccCCCCCccCC--ccccCCCCccccCC-CCceecC
Q psy952          346 VDECAKVETNQCGH--KCVDTLTGYYCECN-TGYKLLE  380 (573)
Q Consensus       346 ~~~C~~~~~~~C~~--~C~~~~~~~~C~C~-~~f~c~~  380 (573)
                      ++||.. ....|..  .|.|+.++|.|.+. .+|....
T Consensus         3 idEC~~-~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~   39 (71)
T 2kl7_A            3 VNECLT-IPEACKGEMKCINHYGGYLCLPRSAAVINDL   39 (71)
T ss_dssp             SCCTTC-CCCSCTTEEEEEETTCCEEEEETTSCCCSCC
T ss_pred             cccccC-CCCCCCCCCEeECCCCCeEecccCCcccccc
Confidence            567765 4567865  79999999999844 6776543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=86.85  E-value=21  Score=33.76  Aligned_cols=212  Identities=11%  Similarity=0.091  Sum_probs=112.1

Q ss_pred             ccEEEEEcCCCceeecc--cCCcceEEEEEEcCCCEEEEEECC-----CCeEEEEEcCCCcceEEEcCCCCC-cceeEEe
Q psy952           25 YYVRNMSLDATQYSLVH--QDLLNVVAMDFHYKENRFYFADVA-----AKTIYRSRVGSTEKERVIRHDSHG-LEGLAVD   96 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~--~~~~~~~~v~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~i~~~~~~~-p~glavD   96 (573)
                      +.+..+++.......+.  +....-.+++..  +++||+.--.     ...++++++.....+.+......+ -.++++ 
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-  106 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-
Confidence            46777887765544331  111111233333  7889997432     246888988765555443211111 123333 


Q ss_pred             ecCCcEEEEeCC-----CCeEEEEEcCCCceeEeccCCCCcc---eEEEeCCCceEEEEecC--C----cCeEEEEeccC
Q psy952           97 WVGRKLYWLDRH-----SKQLDVAELDGTNRKTLKTAIQDPR---GITLHPGIGYVYFSSWN--L----QAYIGKIGMDG  162 (573)
Q Consensus        97 ~~~~~LY~td~~-----~~~I~~~~ldg~~~~~l~~~~~~P~---~Iavdp~~g~LYwtd~~--~----~~~I~r~~ldG  162 (573)
                       .+++||+.-..     .+.++++++....-+.+. .+..|+   ++++.  ++.||+.-..  .    ...+++.++..
T Consensus       107 -~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~  182 (302)
T 2xn4_A          107 -LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-PMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATT  182 (302)
T ss_dssp             -ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-CCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTT
T ss_pred             -ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-CCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCC
Confidence             47899997421     246888888765544443 222222   33433  6789987421  0    34578887764


Q ss_pred             CCcEEEEecCCCCCCCc---eEEEeccCCeEEEEeCC-----CCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEE
Q psy952          163 SNFTRILTHEDDIAWPN---ALTLDYFTERLYWADAH-----LDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYW  234 (573)
Q Consensus       163 ~~~~~l~~~~~~l~~P~---glaiD~~~~~LYw~D~~-----~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lyw  234 (573)
                      ..-+.+    ..+..|.   ++++  .+++||+.-..     .+.|+++++....=+.+........-.++++.++.||+
T Consensus       183 ~~W~~~----~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~i~v  256 (302)
T 2xn4_A          183 NEWTYI----AEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYV  256 (302)
T ss_dssp             TEEEEE----CCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEE
T ss_pred             CcEEEC----CCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEECCEEEE
Confidence            432222    2232232   3333  37899998432     35789999876544444321101122456677889988


Q ss_pred             ecCCC-----CceEEEeccC
Q psy952          235 TDWNT-----KSINRADKFN  249 (573)
Q Consensus       235 td~~~-----~~I~~~~~~~  249 (573)
                      .-..+     ..|++.+..+
T Consensus       257 ~GG~~~~~~~~~v~~yd~~~  276 (302)
T 2xn4_A          257 VGGDDGSCNLASVEYYNPTT  276 (302)
T ss_dssp             ECCBCSSSBCCCEEEEETTT
T ss_pred             ECCcCCCcccccEEEEcCCC
Confidence            74322     3355555433

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=86.36  E-value=38  Score=36.16  Aligned_cols=18  Identities=6%  Similarity=0.121  Sum_probs=15.1

Q ss_pred             CcceEEEeCCCceEEEEe
Q psy952          131 DPRGITLHPGIGYVYFSS  148 (573)
Q Consensus       131 ~P~~Iavdp~~g~LYwtd  148 (573)
                      +..++|+||.++.||+..
T Consensus       394 ~w~~~a~dp~~~~~yv~~  411 (599)
T 1w6s_A          394 NQGHDSYDPKRELFFMGI  411 (599)
T ss_dssp             CSCBCEEETTTTEEEEEE
T ss_pred             CCCCccCCCCCCEEEEec
Confidence            456899999999999875

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=86.17  E-value=22  Score=33.30  Aligned_cols=228  Identities=10%  Similarity=0.014  Sum_probs=120.2

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-EEEc
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-RVIR   84 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~i~~   84 (573)
                      +|.+......+|+.+. ...|+..++...+...... ....+..+.++  .. +..+....+.+........... ..+.
T Consensus        71 ~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~  147 (318)
T 4ggc_A           71 SSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLS  147 (318)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEc
Confidence            4554443334555444 4567777776554322222 22334444444  33 3444444555665555443322 2222


Q ss_pred             CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eE----eccCCCCcceEEEeCCCceEEEEecC-CcCeEEEE
Q psy952           85 HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KT----LKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKI  158 (573)
Q Consensus        85 ~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~----l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~  158 (573)
                      ........+++...++ ++++-...+.|.+.++..... ..    ..........++..|....++++-.+ ....|...
T Consensus       148 ~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lw  226 (318)
T 4ggc_A          148 GHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW  226 (318)
T ss_dssp             CCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEE
T ss_pred             CccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEE
Confidence            3335666777776544 445555667888888754321 11    11233346778888877776655433 34456555


Q ss_pred             eccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC-CCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEec
Q psy952          159 GMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA-HLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTD  236 (573)
Q Consensus       159 ~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~-~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd  236 (573)
                      ++.........   ........+++.+..+.|+.+-. ..+.|...++........+.+. .....+|++. ++.+++|-
T Consensus       227 d~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH-~~~V~~l~~spdg~~l~S~  302 (318)
T 4ggc_A          227 NVCSGACLSAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH-TSRVLSLTMSPDGATVASA  302 (318)
T ss_dssp             ETTTCCEEEEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC-SSCEEEEEECTTSSCEEEE
T ss_pred             ecccccccccc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEE
Confidence            55544433333   23334567788888888887654 4678888888654443333332 3455677774 34444444


Q ss_pred             CCCCceE
Q psy952          237 WNTKSIN  243 (573)
Q Consensus       237 ~~~~~I~  243 (573)
                      ...+.|.
T Consensus       303 s~D~~v~  309 (318)
T 4ggc_A          303 AADETLR  309 (318)
T ss_dssp             ETTTEEE
T ss_pred             ecCCeEE
Confidence            3444443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.15  E-value=26  Score=34.09  Aligned_cols=200  Identities=7%  Similarity=-0.058  Sum_probs=102.8

Q ss_pred             cccEEEEEcCC--Cceeeccc---CCcceEEEEEEcCCCEEEEEECC----------CCeEEEEEcCCCcceEEEcCCCC
Q psy952           24 KYYVRNMSLDA--TQYSLVHQ---DLLNVVAMDFHYKENRFYFADVA----------AKTIYRSRVGSTEKERVIRHDSH   88 (573)
Q Consensus        24 ~~~I~~i~l~g--~~~~~~~~---~~~~~~~v~~d~~~~~ly~~d~~----------~~~I~~~~~~g~~~~~i~~~~~~   88 (573)
                      .+.++++++..  ...+.+..   ....-.++++-  +++||+.--.          ...++++++.....+.+.... .
T Consensus        30 ~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p  106 (357)
T 2uvk_A           30 GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-P  106 (357)
T ss_dssp             TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-S
T ss_pred             CCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-C
Confidence            35788999863  33333321   11112233332  6899996332          246888888765544432211 1


Q ss_pred             Ccc---eeEEeecCCcEEEEeCC---------------------------------------CCeEEEEEcCCCceeEec
Q psy952           89 GLE---GLAVDWVGRKLYWLDRH---------------------------------------SKQLDVAELDGTNRKTLK  126 (573)
Q Consensus        89 ~p~---glavD~~~~~LY~td~~---------------------------------------~~~I~~~~ldg~~~~~l~  126 (573)
                      .+.   ++++  .+++||+.-..                                       .+.++++++....-+.+.
T Consensus       107 ~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  184 (357)
T 2uvk_A          107 MGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG  184 (357)
T ss_dssp             SCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE
T ss_pred             cccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC
Confidence            221   2333  57899997642                                       367999998765544443


Q ss_pred             cCCCCc----ceEEEeCCCceEEEEecC-----CcCeEEEEeccCCCcEEEEecCCCCCCCc---eEEEeccCCeEEEEe
Q psy952          127 TAIQDP----RGITLHPGIGYVYFSSWN-----LQAYIGKIGMDGSNFTRILTHEDDIAWPN---ALTLDYFTERLYWAD  194 (573)
Q Consensus       127 ~~~~~P----~~Iavdp~~g~LYwtd~~-----~~~~I~r~~ldG~~~~~l~~~~~~l~~P~---glaiD~~~~~LYw~D  194 (573)
                      . +..|    .++++.  ++.||+.-..     ....+++.++|-...+-..  ...+..|.   +.++-..+++||+.-
T Consensus       185 ~-~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~iyv~G  259 (357)
T 2uvk_A          185 E-SPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNK--LAPVSSPDGVAGGFAGISNDSLIFAG  259 (357)
T ss_dssp             E-CSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEE--CCCSSTTTCCBSCEEEEETTEEEEEC
T ss_pred             C-CCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEe--cCCCCCCcccccceEEEECCEEEEEc
Confidence            2 2111    344443  6789887421     1345777776433333222  23343443   222223478999975


Q ss_pred             CCC----------------------CeEEEEeCCCCcEEEEEeCCcccee---EEEeeeCCeEEEec
Q psy952          195 AHL----------------------DYIASVDLDGKHKHIVISGQKVPHV---FALTLFEDHIYWTD  236 (573)
Q Consensus       195 ~~~----------------------~~I~~~~~dG~~~~~l~~~~~~~~p---~~ia~~~~~lywtd  236 (573)
                      ...                      ..++++++....=+.+..   ++.|   .++++.+++||+.-
T Consensus       260 G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~G  323 (357)
T 2uvk_A          260 GAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRAYGVSLPWNNSLLIIG  323 (357)
T ss_dssp             CEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE---CSSCCBSSEEEEETTEEEEEE
T ss_pred             CccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC---CCCCcccceeEEeCCEEEEEe
Confidence            311                      257778877544344432   2222   34556788888863

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=86.01  E-value=0.14  Score=42.35  Aligned_cols=78  Identities=26%  Similarity=0.491  Sum_probs=46.7

Q ss_pred             CCcccCCccccCCCeeeec---ceeeCCcCCCCCCCCCCCCCCCccccCC-CCCccCCccccCCCCccccCCCCceecCC
Q psy952          306 NSTCSSSQFRCNNGKCIDY---HLVCNKESDCEDDSDEPLHCNVDECAKV-ETNQCGHKCVDTLTGYYCECNTGYKLLED  381 (573)
Q Consensus       306 ~~~C~~~~~~C~~g~Ci~~---~~~cd~~~~c~d~sde~~~c~~~~C~~~-~~~~C~~~C~~~~~~~~C~C~~~f~c~~~  381 (573)
                      +++|..  ..|.+ .|++.   +|+|...++.....     +++++|... ....|...|.+ .+.+.|.|+.+|+...+
T Consensus         4 ideC~~--~pC~~-~C~~~~~g~y~C~C~~Gy~g~~-----~~~~~C~~~C~~~~C~~~C~~-~~~y~C~C~~Gy~~~~g   74 (118)
T 1dx5_I            4 VDPCFR--ANCEY-QCQPLDQTSYLCVCAEGFAPIP-----HEPHRCQMFCNQTACPADCDP-NTQASCECPEGYILDDG   74 (118)
T ss_dssp             CCGGGG--CCCSS-EEEECSSSCEEEECCTTEEEET-----TEEEEEEECCCSSEEECEECT-TSTTCEECCTTEEEETT
T ss_pred             cccCCC--CCCCC-CCCCCCCCCEEeECCCCccccC-----CCCCccccccCCCCCCCcccC-CCCeEeECCCCccCCCC
Confidence            345643  23554 77765   68886544443221     123344320 13456566777 58899999999998765


Q ss_pred             CcccccccccCC
Q psy952          382 GKACTDIDECIE  393 (573)
Q Consensus       382 ~~c~~~~~~C~~  393 (573)
                      ..| .++++|..
T Consensus        75 ~~C-~dideC~~   85 (118)
T 1dx5_I           75 FIC-TDIDECEN   85 (118)
T ss_dssp             TEE-EECCHHHH
T ss_pred             Ccc-ccccccCC
Confidence            545 78889875

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=85.40  E-value=21  Score=34.13  Aligned_cols=194  Identities=9%  Similarity=0.113  Sum_probs=97.7

Q ss_pred             EEEEEcCCCceeeccc--CCcceEEEEEEcCCCEEEEEECCC-------CeEEEEEcCCCcceEEEcCCCC-CcceeEEe
Q psy952           27 VRNMSLDATQYSLVHQ--DLLNVVAMDFHYKENRFYFADVAA-------KTIYRSRVGSTEKERVIRHDSH-GLEGLAVD   96 (573)
Q Consensus        27 I~~i~l~g~~~~~~~~--~~~~~~~v~~d~~~~~ly~~d~~~-------~~I~~~~~~g~~~~~i~~~~~~-~p~glavD   96 (573)
                      +.++++.....+.+..  ....-.+++..  +++||+.--..       ..++++++.....+.+...... .-.++++ 
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-  156 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-  156 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-
T ss_pred             EEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-
Confidence            6677776655443311  11112233333  68899975321       3588888876555544221111 1122333 


Q ss_pred             ecCCcEEEEeC------CCCeEEEEEcCCCceeEeccCCCCcc---eEEEeCCCceEEEEecCC----cCeEEEEeccCC
Q psy952           97 WVGRKLYWLDR------HSKQLDVAELDGTNRKTLKTAIQDPR---GITLHPGIGYVYFSSWNL----QAYIGKIGMDGS  163 (573)
Q Consensus        97 ~~~~~LY~td~------~~~~I~~~~ldg~~~~~l~~~~~~P~---~Iavdp~~g~LYwtd~~~----~~~I~r~~ldG~  163 (573)
                       .+++||+.-.      ..+.++++++....-+.+. .+..|+   ++++.  ++.||+.-...    ...+++.++...
T Consensus       157 -~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  232 (318)
T 2woz_A          157 -HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLA-PMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTN  232 (318)
T ss_dssp             -ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEEC-CCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred             -ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECC-CCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCC
Confidence             5789999753      1356899998765544443 222222   34443  57899885211    245777777654


Q ss_pred             CcEEEEecCCCCCCCc---eEEEeccCCeEEEEeCC--------------CCeEEEEeCCCCcEEEEEeCCccceeEEEe
Q psy952          164 NFTRILTHEDDIAWPN---ALTLDYFTERLYWADAH--------------LDYIASVDLDGKHKHIVISGQKVPHVFALT  226 (573)
Q Consensus       164 ~~~~l~~~~~~l~~P~---glaiD~~~~~LYw~D~~--------------~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia  226 (573)
                      .=+.+    ..+..|.   ++++  .+++||+.-..              .+.|+++++....=+.+...  .....+.+
T Consensus       233 ~W~~~----~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~r~~~~~~  304 (318)
T 2woz_A          233 KWEVM----TEFPQERSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKE--IRYASGAS  304 (318)
T ss_dssp             CEEEC----CCCSSCCBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEEESC--CGGGTTCE
T ss_pred             eEEEC----CCCCCcccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhhccc--ccccccce
Confidence            32222    2233332   3333  46888887321              34566777655433333221  12223444


Q ss_pred             eeCCeEEEe
Q psy952          227 LFEDHIYWT  235 (573)
Q Consensus       227 ~~~~~lywt  235 (573)
                      +.+++||+.
T Consensus       305 ~~~~~iyi~  313 (318)
T 2woz_A          305 CLATRLNLF  313 (318)
T ss_dssp             EEEEEEEGG
T ss_pred             eeCCEEEEE
Confidence            556666643

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=85.36  E-value=0.43  Score=32.91  Aligned_cols=29  Identities=7%  Similarity=-0.163  Sum_probs=23.9

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      +.|.|.|+..+   ++|+| |+.||.+..++++
T Consensus        20 ~~C~~~C~n~~---Gsy~C~C~~Gy~~~~d~~~   49 (53)
T 1apq_A           20 PQCQHLCHNYV---GGYFCSCRPGYELQEDRHS   49 (53)
T ss_dssp             CTTSSEEEEET---TEEEEECSTTCEECTTSSC
T ss_pred             CCCCCEeECCC---CCeEEECCCCCeECCCCCc
Confidence            46889999888   67999 9999999776553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=85.14  E-value=41  Score=35.47  Aligned_cols=139  Identities=16%  Similarity=0.140  Sum_probs=85.5

Q ss_pred             CCcceeEEeecCCcEEEEeCCCCeEEEEEcCC----------CceeEec---cCCCCcceEEEeCCCceEEEEecCCcCe
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG----------TNRKTLK---TAIQDPRGITLHPGIGYVYFSSWNLQAY  154 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg----------~~~~~l~---~~~~~P~~Iavdp~~g~LYwtd~~~~~~  154 (573)
                      .+|.|+.+++.++.+|++.....++.|++...          ..+.+++   .....|...++|+ +|+.|.|-. ..+.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~-~G~aYTtlf-idSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDG-RGNAYTTLF-IDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEET-TTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECC-CCceEeeee-ecce
Confidence            68999999999999999999999999998762          1122222   2334699999999 679998864 3456


Q ss_pred             EEEEecc-------CCCcEEEEecCCCCCCCceE------EEeccCCeEEEEeCCC------------CeEEEEeCCCCc
Q psy952          155 IGKIGMD-------GSNFTRILTHEDDIAWPNAL------TLDYFTERLYWADAHL------------DYIASVDLDGKH  209 (573)
Q Consensus       155 I~r~~ld-------G~~~~~l~~~~~~l~~P~gl------aiD~~~~~LYw~D~~~------------~~I~~~~~dG~~  209 (573)
                      |.+-+++       |.....++.....-..|.-+      +.++++++|....--.            ..-..+++.|..
T Consensus       401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdk  480 (638)
T 3sbq_A          401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDE  480 (638)
T ss_dssp             EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSS
T ss_pred             EEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCc
Confidence            7666654       33322233111222233333      3455566665543311            134667888888


Q ss_pred             EEEEEeCCcccee-EEEeee
Q psy952          210 KHIVISGQKVPHV-FALTLF  228 (573)
Q Consensus       210 ~~~l~~~~~~~~p-~~ia~~  228 (573)
                      .++|.....++.| +++.+.
T Consensus       481 M~lv~D~P~~~EPHda~~v~  500 (638)
T 3sbq_A          481 MKLVHDGPTFAEPHDCIMAR  500 (638)
T ss_dssp             CEEEEEEEESSCCCCEEEEE
T ss_pred             eEEEecCCCCCCCcceEEec
Confidence            8888764334444 234443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=83.87  E-value=31  Score=32.94  Aligned_cols=155  Identities=12%  Similarity=0.051  Sum_probs=80.8

Q ss_pred             EEEEEcCCCceeeccc--CCcceEEEEEEcCCCEEEEEECC--------CCeEEEEEcCCCcceEEEcCCCCCcc-eeEE
Q psy952           27 VRNMSLDATQYSLVHQ--DLLNVVAMDFHYKENRFYFADVA--------AKTIYRSRVGSTEKERVIRHDSHGLE-GLAV   95 (573)
Q Consensus        27 I~~i~l~g~~~~~~~~--~~~~~~~v~~d~~~~~ly~~d~~--------~~~I~~~~~~g~~~~~i~~~~~~~p~-glav   95 (573)
                      +.++++.....+.+..  ....-.++++.  +++||+.--.        ...++++++.....+.+..  +..|. +.+.
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~--~p~~r~~~~~  144 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP--LPYVVYGHTV  144 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC--CSSCCBSCEE
T ss_pred             eEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC--CCCcccceeE
Confidence            6777777655443321  11111233333  7899997431        2468899987655443322  22221 1112


Q ss_pred             eecCCcEEEEeCC------CCeEEEEEcCCCceeEeccCCCCcc---eEEEeCCCceEEEEecCC----cCeEEEEeccC
Q psy952           96 DWVGRKLYWLDRH------SKQLDVAELDGTNRKTLKTAIQDPR---GITLHPGIGYVYFSSWNL----QAYIGKIGMDG  162 (573)
Q Consensus        96 D~~~~~LY~td~~------~~~I~~~~ldg~~~~~l~~~~~~P~---~Iavdp~~g~LYwtd~~~----~~~I~r~~ldG  162 (573)
                      -..+++||+.-..      .+.++++++....-+.+. .+..|+   ++++.  ++.||+.-...    ...+++.++..
T Consensus       145 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  221 (315)
T 4asc_A          145 LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELA-PMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD  221 (315)
T ss_dssp             EEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECC-CCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred             EEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECC-CCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence            2257889998543      357899998765444433 222232   33333  57888875211    23677777754


Q ss_pred             CCcEEEEecCCCCCCCc---eEEEeccCCeEEEEe
Q psy952          163 SNFTRILTHEDDIAWPN---ALTLDYFTERLYWAD  194 (573)
Q Consensus       163 ~~~~~l~~~~~~l~~P~---glaiD~~~~~LYw~D  194 (573)
                      ..=+.+    ..+..|.   ++++  .+++||+.-
T Consensus       222 ~~W~~~----~~~p~~r~~~~~~~--~~~~l~v~G  250 (315)
T 4asc_A          222 NKWAPF----EAFPQERSSLSLVS--LVGTLYAIG  250 (315)
T ss_dssp             TEEEEE----CCCSSCCBSCEEEE--ETTEEEEEE
T ss_pred             CeEEEC----CCCCCcccceeEEE--ECCEEEEEC
Confidence            432222    2233332   3333  367888864

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=83.79  E-value=1.1  Score=43.81  Aligned_cols=42  Identities=31%  Similarity=0.781  Sum_probs=31.3

Q ss_pred             CccccCCCCCccCC--ccccCCCCccccCCCCceecCCCcccccccccCC
Q psy952          346 VDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDGKACTDIDECIE  393 (573)
Q Consensus       346 ~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~C~~  393 (573)
                      +++|..   .+|.+  .|.+..+++.|.|+.+|.   +..|-.++++|..
T Consensus         5 ~~~C~~---~pC~~~g~C~~~~~~~~C~C~~g~~---g~~C~~~~~eC~~   48 (317)
T 3h5c_B            5 GSPCIS---QPCLHNGSCQDSIWGYTCTCSPGYE---GSNCELAKNECHP   48 (317)
T ss_dssp             -CCTTS---CCCTTTCCCCCCSSSCCCCCSSSCC---SSSSCCCSSSCCT
T ss_pred             CCcCCC---CCCCCCCEeECCCCCeEEECCCCCc---CCccccCcccCCC
Confidence            345644   45776  799999999999999996   5546558999975

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=82.98  E-value=0.15  Score=46.36  Aligned_cols=62  Identities=29%  Similarity=0.733  Sum_probs=12.3

Q ss_pred             CCccccCCCCCccCC--ccccCCCCccccCCCCceecCCCcccccc-cccCCCCCCCCCCCCCCCCCCCCCCCceecC
Q psy952          345 NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDGKACTDI-DECIEQPGVCSQYPAMCHNRPCDKDTEFACR  419 (573)
Q Consensus       345 ~~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~c~~~~~c~~~~-~~C~~~~~~~~~~~~~C~~~~C~~~~~f~C~  419 (573)
                      ++++|..   .+|.+  .|.+..++|.|.|+.+|.   +..|..++ ++|...+..+..   .|.+.   .+ .|+|.
T Consensus        41 dideC~~---~pC~ngg~C~n~~g~y~C~C~~Gf~---G~~Ce~~i~deC~~~~~~C~~---~C~n~---~g-sy~C~  105 (195)
T 1nfu_B           41 DGDQCET---SPCQNQGKCKDGLGEYTCTCLEGFE---GKNCELFTRKLCSLDNGDCDQ---FCHEE---QN-SVVCS  105 (195)
T ss_dssp             ----------------------------------------------CCGGGTGGGGCSS---EEEEE---TT-EEEEE
T ss_pred             CCcccCC---CCCCCCCEeECCCCCeeEeCCCCce---eccccccccccccCCCCCCCC---EeECC---CC-CeEEE
Confidence            3567754   56877  899999999999999997   54455556 778754433322   45443   34 67764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=82.94  E-value=29  Score=34.87  Aligned_cols=138  Identities=10%  Similarity=0.111  Sum_probs=76.8

Q ss_pred             eCCCCCCEEEEEecccEEEEEcCCCc---------ee--ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc
Q psy952           11 RRDSIKPWLIFSNKYYVRNMSLDATQ---------YS--LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK   79 (573)
Q Consensus        11 ~~~~~~~~l~~s~~~~I~~i~l~g~~---------~~--~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~   79 (573)
                      +.......|+.+....++..+++...         +.  ..+. +..+..|+|  .++.||++  ..+.|..+++.....
T Consensus        44 ais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~V~~l~f--d~~~L~v~--~~~~l~v~dv~sl~~  118 (388)
T 1xip_A           44 DISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPDVIFVCF--HGDQVLVS--TRNALYSLDLEELSE  118 (388)
T ss_dssp             EEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTTEEEEEE--ETTEEEEE--ESSEEEEEESSSTTC
T ss_pred             EEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCCeeEEEE--CCCEEEEE--cCCcEEEEEchhhhc
Confidence            33344556666666777776654221         11  1222 233889999  57888888  557899998765332


Q ss_pred             e-EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEE
Q psy952           80 E-RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI  158 (573)
Q Consensus        80 ~-~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~  158 (573)
                      . .+..... ...  .+-+...++.... ..|.|.+.++.......+.   ...+.++.+| +| +++.-  ..+.|...
T Consensus       119 ~~~~~~~~~-~v~--~i~~~~p~~av~~-~dG~L~v~dl~~~~~~~~~---~~Vs~v~WSp-kG-~~vg~--~dg~i~~~  187 (388)
T 1xip_A          119 FRTVTSFEK-PVF--QLKNVNNTLVILN-SVNDLSALDLRTKSTKQLA---QNVTSFDVTN-SQ-LAVLL--KDRSFQSF  187 (388)
T ss_dssp             EEEEEECSS-CEE--EEEECSSEEEEEE-TTSEEEEEETTTCCEEEEE---ESEEEEEECS-SE-EEEEE--TTSCEEEE
T ss_pred             cCccceeec-cee--eEEecCCCEEEEE-CCCCEEEEEccCCcccccc---CCceEEEEcC-Cc-eEEEE--cCCcEEEE
Confidence            2 1211111 122  2334454555543 5678888888755444333   3467888888 44 44433  24556666


Q ss_pred             eccCCC
Q psy952          159 GMDGSN  164 (573)
Q Consensus       159 ~ldG~~  164 (573)
                      ..++..
T Consensus       188 ~~~~~~  193 (388)
T 1xip_A          188 AWRNGE  193 (388)
T ss_dssp             EEETTE
T ss_pred             cCCCcc
Confidence            666665

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=81.07  E-value=60  Score=34.39  Aligned_cols=169  Identities=6%  Similarity=0.010  Sum_probs=105.3

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC----CCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS----HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG  119 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~----~~p~glavD~~~~~LY~td~~~~~I~~~~ldg  119 (573)
                      ...+.+++|.+.+..|-.+.. ++.|+..+.++  ....+....    .....|++.+.++.|+.+.. .+.|.+.++.+
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~-dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~-DGtVkIWd~~~  160 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSN-NGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNE-DGELQFFSIRK  160 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEET-TSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEET-TSEEEEEECCC
T ss_pred             CCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcC-CCEEEEEECCC
Confidence            456899999997777776654 45566666544  111122111    14788999998888888764 67899999887


Q ss_pred             Cce--------eEec----cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE----EEEecCCCCCCCceEEE
Q psy952          120 TNR--------KTLK----TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT----RILTHEDDIAWPNALTL  183 (573)
Q Consensus       120 ~~~--------~~l~----~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~----~l~~~~~~l~~P~glai  183 (573)
                      ...        .++.    ........|+..|. | | .+-. ....|...++++....    .+.  ...-....++++
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-g-L-aass-~D~tVrlWd~~~~~~~~~~~tL~--~~h~~~V~svaF  234 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYED-V-L-VAAL-SNNSVFSMTVSASSHQPVSRMIQ--NASRRKITDLKI  234 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-E-E-EEEE-TTCCEEEECCCSSSSCCCEEEEE--CCCSSCCCCEEE
T ss_pred             CccccccceeeeeeecccccccccEEEEEEcCC-c-E-EEEe-CCCeEEEEECCCCccccceeeec--ccccCcEEEEEE
Confidence            642        3332    12346899999995 4 3 3332 3566777777776632    232  112234577787


Q ss_pred             eccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee
Q psy952          184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL  227 (573)
Q Consensus       184 D~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~  227 (573)
                      .  ++.|-.+-  .+.|...+..+....++..+. .....+|++
T Consensus       235 s--g~~LASa~--~~tIkLWd~~~~~~~~~~~gh-~~~V~~va~  273 (588)
T 2j04_A          235 V--DYKVVLTC--PGYVHKIDLKNYSISSLKTGS-LENFHIIPL  273 (588)
T ss_dssp             E--TTEEEEEC--SSEEEEEETTTTEEEEEECSC-CSCCCEEEE
T ss_pred             E--CCEEEEEe--CCeEEEEECCCCeEEEEEcCC-CceEEEEEe
Confidence            6  45555553  478999999887775555342 344455666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	573
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	4e-65
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	1e-60
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	2e-11
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	1e-07
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	4e-07
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	5e-07
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	9e-11
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-08
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-08
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-08
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-10
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-09
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-08
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-07
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	2e-09
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	4e-09
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	8e-09
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	2e-07
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	2e-09
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-09
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-08
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	6e-07
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	9e-06
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	4e-09
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	4e-09
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	1e-07
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	1e-06
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-09
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-08
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-06
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-05
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	6e-09
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	6e-09
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	2e-07
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	5e-07
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	1e-08
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	2e-08
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	4e-08
d1kigl_	51	g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bo	5e-08
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	8e-08
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-07
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-06
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-06
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	1e-07
d2p3ua1	51	g.3.11.1 (A:87-137) Factor X, N-terminal module {H	2e-07
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	2e-07
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	5e-07
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	1e-06
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	7e-06
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	2e-07
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	3e-07
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	4e-07
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	1e-05
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	2e-07
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	7e-07
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	9e-07
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	2e-05
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	4e-07
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	4e-07
d1autl2	50	g.3.11.1 (L:97-146) Activated protein c (autoproth	5e-07
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	5e-07
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	6e-07
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	1e-06
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	3e-06
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	4e-06
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	3e-06
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	7e-06
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	7e-06
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	8e-05
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	3e-06
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	4e-06
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	5e-06
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	2e-05
d1rfnb_	57	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	4e-06
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	8e-06
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	3e-05
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	5e-05
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	6e-05
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	9e-05
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	4e-04
d1ijqa2	50	g.3.11.1 (A:643-692) Low density lipoprotein (LDL)	0.003

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  211 bits (538), Expect = 4e-65
 Identities = 84/263 (31%), Positives = 147/263 (55%), Gaps = 8/263 (3%)

Query: 17  PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV-- 74
            +L F+N++ VR M+LD ++Y+ +  +L NVVA+D     NR Y++D++ + I  +++  
Sbjct: 2   AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61

Query: 75  --GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQD 131
             G +  + VI  D    +GLAVDW+   +YW D     + VA+  G   +   +     
Sbjct: 62  AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121

Query: 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLY 191
           PR I + P  G++Y++ W   A I K G++G +        ++I WPN +TLD  + RLY
Sbjct: 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTENIQWPNGITLDLLSGRLY 179

Query: 192 WADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
           W D+ L  I+S+D++G ++  ++  +K + H F+L +FED ++WTD   ++I  A++  G
Sbjct: 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239

Query: 251 RDYRVLRNTTHRPYDIHVYHPLK 273
            D  +L      P D+ ++H L 
Sbjct: 240 SDVNLLAENLLSPEDMVLFHNLT 262

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  199 bits (507), Expect = 1e-60
 Identities = 70/263 (26%), Positives = 126/263 (47%), Gaps = 13/263 (4%)

Query: 18  WLIFSNKYYVRNMSLDATQYS------LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYR 71
            L+F+    +  + L+            +H     ++ + F   +   Y+ D++  +I R
Sbjct: 3   HLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGR 62

Query: 72  SRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQ 130
           + +   E   +IR D    EG+A+D +GR ++W D    +++VA++DGT R+ L  T + 
Sbjct: 63  ASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLV 122

Query: 131 DPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTER 189
           +PRGI   P  G +Y++ WN     I    MDG+N  R +  +D++  PN LT D F+ +
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGLPNGLTFDAFSSQ 180

Query: 190 LYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFN 249
           L W DA       ++     +  V+ G  + + FA+T +  ++Y+TDW T S+   D   
Sbjct: 181 LCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAI 238

Query: 250 GRDYRVL-RNTTHRPYDIHVYHP 271
            ++      +   R Y I +   
Sbjct: 239 SKEMDTFHPHKQTRLYGITIALS 261

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 16/38 (42%), Positives = 20/38 (52%)

Query: 410 CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMC 447
           C+   +F C +G CI    VC+   DC D SDEP   C
Sbjct: 6   CEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC 43

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 307 STCSS-SQFRCNNGKCIDYHLVCNKESDCEDDSDEPLH 343
           + C   ++F+C++G+CI    VCN   DC D SDEP+ 
Sbjct: 4   TLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 41

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 4e-07
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC 562
             P+  KC +   C+    +C+   DC D SDE    C
Sbjct: 7   EGPNKFKCHSGE-CITLDKVCNMARDCRDWSDEPIKEC 43

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 464 NYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           +  CI     C+   DCRD SDE  + C
Sbjct: 16  SGECITLDKVCNMARDCRDWSDEPIKEC 43

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (132), Expect = 9e-11
 Identities = 21/42 (50%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQ 449
             C    EFAC N  CI + W CD DNDC D+SDE   +C Q
Sbjct: 4   PQCQPG-EFACANSRCIQERWKCDGDNDCLDNSDEAPALCHQ 44

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ 564
            C P    CAN+  C++  W CDGDNDC D SDE P  C Q
Sbjct: 5   QCQPGEFACANSR-CIQERWKCDGDNDCLDNSDEAPALCHQ 44

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEP 341
            C   +F C N +CI     C+ ++DC D+SDE 
Sbjct: 5   QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 4e-08
 Identities = 18/43 (41%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 450 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
             C  G   C    N RCI +   CDG +DC D SDE P  C 
Sbjct: 4   PQCQPGEFAC---ANSRCIQERWKCDGDNDCLDNSDEAPALCH 43

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (128), Expect = 3e-10
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 407 NRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQR 450
           +  C    +F C +G CIP+ W CD DNDCGD SDE    C  +
Sbjct: 2   SHSCSST-QFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 5e-09
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEP 341
           + +CSS+QF+CN+G+CI  H  C+ ++DC D SDE 
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDET 37

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR 565
           + +C     KC +   C+  +W CDGDNDCGD SDE   +C  +
Sbjct: 2   SHSCSSTQFKCNSGR-CIPEHWTCDGDNDCGDYSDETHANCTNQ 44

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 449 QRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
             +C+    +C    + RCIP+   CDG +DC D SDE   NC 
Sbjct: 2   SHSCSSTQFKC---NSGRCIPEHWTCDGDNDCGDYSDETHANCT 42

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 17/35 (48%), Positives = 19/35 (54%)

Query: 413 DTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMC 447
              F C +  CIP+LW CD D DC D SDE    C
Sbjct: 5   PASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 39

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 4e-09
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 523 ITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC 562
           +TC P   +C ++  C+   W CD D DC D SDE P  C
Sbjct: 1   LTCGPASFQCNSST-CIPQLWACDNDPDCEDGSDEWPQRC 39

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 8e-09
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEP 341
           TC  + F+CN+  CI     C+ + DCED SDE 
Sbjct: 2   TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 35

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           C     +C    +  CIP+   CD   DC DGSDE PQ C
Sbjct: 3   CGPASFQC---NSSTCIPQLWACDNDPDCEDGSDEWPQRC 39

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDI 388
           +DEC   + + C   CV+   GY C+C  G++L    KAC  +
Sbjct: 1   IDECQ--DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (121), Expect = 3e-09
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 307 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
           +TC   +F+C++G CI     C++E DC+D SDE
Sbjct: 1   ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 2e-08
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 412 KDTEFACRNGHCIPKLWVCDFDNDCGDDSDE 442
           +  EF C +G+CI     CD + DC D SDE
Sbjct: 4   RPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (104), Expect = 6e-07
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
           TC P   +C++ N C+     CD + DC DMSDE
Sbjct: 2   TCRPDEFQCSDGN-CIHGSRQCDREYDCKDMSDE 34

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 9e-06
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)

Query: 451 NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
            C     +C   ++  CI     CD + DC+D SDE    C
Sbjct: 2   TCRPDEFQC---SDGNCIHGSRQCDREYDCKDMSDE--VGC 37

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 4e-09
 Identities = 16/39 (41%), Positives = 25/39 (64%)

Query: 302 GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
           G+     C  ++F+C +GKCI Y  VC+  ++C+D SDE
Sbjct: 1   GSAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 4e-09
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 405 CHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMC 447
                C+++ EF C++G CI   WVCD   +C D SDE    C
Sbjct: 3   AVGDRCERN-EFQCQDGKCISYKWVCDGSAECQDGSDESQETC 44

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 519 CPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC 562
                 C  +  +C +   C+   W+CDG  +C D SDE    C
Sbjct: 2   SAVGDRCERNEFQCQDGK-CISYKWVCDGSAECQDGSDESQETC 44

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
                C +   +C    + +CI     CDG  +C+DGSDE  + C
Sbjct: 3   AVGDRCERNEFQC---QDGKCISYKWVCDGSAECQDGSDESQETC 44

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (119), Expect = 5e-09
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE 442
           PC    EF C +G CI   W CD   DC D SDE
Sbjct: 1   PCSAF-EFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (111), Expect = 5e-08
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 309 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
           CS+ +F C +G+CI     C+   DC+D SDE
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (97), Expect = 5e-06
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
           C      C +   C+   W CDG  DC D SDE+
Sbjct: 2   CSAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDEE 34

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           C+     C    +  CI     CDG  DC+D SDE  +NC
Sbjct: 2   CSAFEFHC---LSGECIHSSWRCDGGPDCKDKSDE--ENC 36

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (119), Expect = 6e-09
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE 442
           + C +  EF C +G CI + +VCD D DC D SDE
Sbjct: 1   KTCSQA-EFRCHDGKCISRQFVCDSDRDCLDGSDE 34

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (118), Expect = 6e-09
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNV 346
           TCS ++FRC++GKCI    VC+ + DC D SDE   C V
Sbjct: 2   TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCPV 39

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (108), Expect = 2e-07
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 450 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPL 493
           + C++   RC    + +CI +   CD   DC DGSDE   +CP+
Sbjct: 1   KTCSQAEFRC---HDGKCISRQFVCDSDRDCLDGSDE--ASCPV 39

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (105), Expect = 5e-07
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
           TC     +C +   C+   ++CD D DC D SDE 
Sbjct: 2   TCSQAEFRCHDGK-CISRQFVCDSDRDCLDGSDEA 35

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACT 386
           +EC       C H C + + GY+C C   Y L +D K C 
Sbjct: 1   NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 40

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 2e-08
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 346 VDECAKVETNQ--CGHKCVDTLTGYYCECNTGYKLLEDGKACTD 387
           +DEC         C H C + L G+YC C  GY L  + + C++
Sbjct: 1   IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 4e-08
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
           +DEC ++     G KC++T   + C C TGY L ED + C
Sbjct: 3   IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (113), Expect = 5e-08
 Identities = 10/40 (25%), Positives = 17/40 (42%)

Query: 352 VETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
           ++   C   C +  +   C C  GY L +D K+C   +  
Sbjct: 3   LDNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 8e-08
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
            C     +C    +C+   W CDGD DC D SDE 
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 307 STCSSSQFRC-NNGKCIDYHLVCNKESDCEDDSDE 340
             C + +F+C  +G CI     C+ ++DC D SDE
Sbjct: 2   GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 7/42 (16%)

Query: 402 PAMCHNRPCDKDTEFACR-NGHCIPKLWVCDFDNDCGDDSDE 442
           P  CH        EF CR +G CIP  W CD D DC D SDE
Sbjct: 1   PGGCH------TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
           C     +C  + +  CIP    CDG  DC D SDE  ++C 
Sbjct: 4   CHTDEFQC--RLDGLCIPLRWRCDGDTDCMDSSDE--KSCE 40

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 346 VDECAKV--ETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDI 388
           VDEC     ++  C H C + L GYYC C  GY L ++   C+ +
Sbjct: 1   VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 11/35 (31%), Positives = 14/35 (40%)

Query: 357 CGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
           C   C +      C C  GY L ++GKAC      
Sbjct: 10  CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 44

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 522 NITCPPHHLKCANTN-ICVEPYWLCDGDNDCGDMSDE 557
           ++TC      C      C+  +W CDG  DC + SDE
Sbjct: 2   SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 306 NSTCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDE 340
           + TC S  F C     +CI     C+ + DC++ SDE
Sbjct: 2   SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 412 KDTEFAC--RNGHCIPKLWVCDFDNDCGDDSDE 442
           K  +F+C  R   CIP+ W CD   DC + SDE
Sbjct: 6   KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 7e-06
 Identities = 19/40 (47%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           C  G   C G    RCIP++  CDG+ DC +GSDE  Q C
Sbjct: 5   CKSGDFSC-GGRVNRCIPQFWRCDGQVDCDNGSDE--QGC 41

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 524 TCPPHHLKCAN-TNICVEPYWLCDGDNDCGDMSDEDPLHC 562
            C  H  +C      C+     CDG+ DC D SDEDP  C
Sbjct: 2   HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETC 41

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 44.9 bits (106), Expect = 3e-07
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 413 DTEFACRN--GHCIPKLWVCDFDNDCGDDSDEPAYMC 447
           + E  CR     CI  L  CD + DC D SDE    C
Sbjct: 5   EHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETC 41

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 451 NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           +C +    C G     CI   LFCDG+ DCRDGSDE P+ C
Sbjct: 2   HCDEHESECRGDVP-ECIHDLLFCDGEKDCRDGSDEDPETC 41

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 308 TCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDE-PLHCN 345
            C   +  C  +  +CI   L C+ E DC D SDE P  C+
Sbjct: 2   HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 42

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 525 CPPHHLKCAN-TNICVEPYWLCDGDNDCGDMSDEDPLHC 562
           C     +C      C+    +CDG  DC +  DEDP  C
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC 40

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 43.7 bits (103), Expect = 7e-07
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 451 NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           +C K   +C G     CI   L CDG  DC +  DE P  C
Sbjct: 1   HCEKRTFQCGGNEQ-ECISDLLVCDGHKDCHNAHDEDPDVC 40

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 43.7 bits (103), Expect = 9e-07
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 415 EFACRN--GHCIPKLWVCDFDNDCGDDSDEPAYMC 447
            F C      CI  L VCD   DC +  DE   +C
Sbjct: 6   TFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC 40

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 309 CSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDE-PLHCN 345
           C    F+C  N  +CI   LVC+   DC +  DE P  C+
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCD 41

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 4e-07
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTD 387
           V+EC    T      CV+T   Y C+C   ++L      C D
Sbjct: 3   VNECL-DPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 4e-07
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
           +DEC +      G  C +T   Y CEC  G++L  +  AC
Sbjct: 2   IDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 357 CGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
           C H C++ +    C C  GYKL +D   C    + 
Sbjct: 9   CTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 43

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 5e-07
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACT 386
                 +    QC H C + + GY+C C  GY+L ED  +C 
Sbjct: 10  RSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 44.0 bits (104), Expect = 6e-07
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 308 TCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDE 340
           +C   + +C  ++ +CI    VC+  +DC +  DE
Sbjct: 2   SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 42.9 bits (101), Expect = 1e-06
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 413 DTEFACR--NGHCIPKLWVCDFDNDCGDDSDE 442
           + E  C   +  CI KL+VCD  NDC +  DE
Sbjct: 5   EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 524 TCPPHHLKCANTN-ICVEPYWLCDGDNDCGDMSDE 557
           +C  H  +C   +  C+   ++CDG NDC +  DE
Sbjct: 2   SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 41.7 bits (98), Expect = 4e-06
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 451 NCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPL 493
           +C +   +C G  + +CI K   CDG +DCR+G DE  ++C L
Sbjct: 2   SCDEHEHQCGG-DDPQCISKLFVCDGHNDCRNGEDE--KDCTL 41

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)

Query: 415 EFACRNGH--CIPKLWVCDFDNDCGDDSDE 442
           E +C      CIP  W CD +NDC    DE
Sbjct: 5   EISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 7e-06
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 525 CPPHHLKCAN-TNICVEPYWLCDGDNDCGDMSDED 558
           C  H + C   +  C+   W CDG+NDC    DE+
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEE 35

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 7e-06
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 309 CSSSQFRCNNG--KCIDYHLVCNKESDCEDDSDE 340
           C   +  C     +CI     C+ E+DC+   DE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 8e-05
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           C      C   +  +CIP    CDG++DC  G DE  +NC
Sbjct: 1   CRIHEISCGAHST-QCIPVSWRCDGENDCDSGEDE--ENC 37

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 41.8 bits (98), Expect = 3e-06
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 5/36 (13%)

Query: 412 KDTEFACRN-----GHCIPKLWVCDFDNDCGDDSDE 442
              +F C       G C P+ W+CD   DC D  DE
Sbjct: 3   PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 41.8 bits (98), Expect = 4e-06
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)

Query: 308 TCSSSQFRCNN-----GKCIDYHLVCNKESDCEDDSDE 340
           +C   QFRC+      G+C     +C+   DC+D  DE
Sbjct: 1   SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 41.4 bits (97), Expect = 5e-06
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 524 TCPPHHLKCANTNI----CVEPYWLCDGDNDCGDMSDE 557
           +CPP   +C+        C    WLCDG  DC D  DE
Sbjct: 1   SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 39.5 bits (92), Expect = 2e-05
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 451 NCTKGWERC--PGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
           +C  G  RC  P   +  C P+   CDG  DC DG DE    C
Sbjct: 1   SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGC 41

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 4e-06
 Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 357 CGHKCVDTL-TGYYCECNTGYKLLEDGKACTDIDEC 391
           C   C ++      C C  GY+L E+ K+C      
Sbjct: 10  CEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 45

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 8e-06
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
            +EC       C H C D   GY C C  G++L+   + C
Sbjct: 2   TNECL-DNNGGCSHVCNDLKIGYECLCPDGFQLV-AQRRC 39

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 357 CGHKCVDTLTG-YYCECNTGYKLLEDGKACTDIDEC 391
           C   C D       C C+ GY LL DG +CT   E 
Sbjct: 9   CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 5e-05
 Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 4/42 (9%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTD 387
           +DEC       C   C +    + C C     L   G+  TD
Sbjct: 2   IDECE--NGGFCSGVCHNLPGTFECICGPDSAL--AGQIGTD 39

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (89), Expect = 6e-05
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTD 387
           ++DEC          +C++T   Y CEC  GY L   G  C D
Sbjct: 4   DMDECK-EPDVCKHGQCINTDGSYRCECPFGYIL--AGNECVD 43

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 42.4 bits (98), Expect = 9e-05
 Identities = 24/209 (11%), Positives = 58/209 (27%), Gaps = 17/209 (8%)

Query: 55  KENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYW-LDRHSKQLD 113
           ++ + +  DV    I++    + E +R           + +   GR     L        
Sbjct: 49  RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG 108

Query: 114 VAELDGTNRKTLKTAIQDPRG-------ITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT 166
           +                                G  +  F  ++     G   +     T
Sbjct: 109 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRT 168

Query: 167 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALT 226
            +     +I+  N + L    + L+  +   + +  + L+     I   G  +P+ F   
Sbjct: 169 -VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH 227

Query: 227 LF--------EDHIYWTDWNTKSINRADK 247
                     +D++Y   +    +   +K
Sbjct: 228 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK 256

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKL-LEDGKAC 385
           +DEC          +CV+T   + C+C+ GY+      K C
Sbjct: 3   IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNC 43

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 50

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 7/45 (15%)

Query: 347 DECAKVETNQCGHKCV------DTLTGYYCECNTGYKLLEDGKAC 385
           +    +    C + C+           + C C  G  L  D ++C
Sbjct: 5   ERTT-LSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	573
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	100.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.95
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.88
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.82
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.8
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.77
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.76
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.76
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.68
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.67
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.61
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.54
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.52
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.49
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.44
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.27
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.27
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.25
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.24
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.24
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.24
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.2
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.19
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.18
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.16
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	99.14
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	99.12
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.11
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	99.11
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.1
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.1
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.09
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.07
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.03
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	98.96
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	98.94
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	98.94
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	98.93
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	98.93
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	98.91
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	98.91
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	98.87
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.81
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	98.77
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.77
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.77
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.77
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	98.73
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.73
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	98.71
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.71
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.65
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.6
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.59
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.56
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.48
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.44
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.42
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.38
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.36
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.33
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.23
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.19
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.18
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.01
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.0
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	97.94
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.92
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.92
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	97.81
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	97.75
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	97.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.72
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.61
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.56
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.35
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	97.3
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.18
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.17
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.93
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.93
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.92
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	96.88
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.85
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	96.79
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	96.77
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.75
d1szba2	45	Mannose-binding protein associated serine protease	96.72
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.7
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	96.69
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.64
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.62
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	96.55
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	96.53
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1nt0a3	45	Mannose-binding protein associated serine protease	96.5
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	96.46
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.45
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.36
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.27
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	96.24
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	96.16
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	96.16
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	96.14
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	96.07
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	95.83
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.77
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	95.76
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	95.72
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	95.56
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	95.55
d1tbga_	340	beta1-subunit of the signal-transducing G protein	95.52
d1nt0a3	45	Mannose-binding protein associated serine protease	95.42
d1szba2	45	Mannose-binding protein associated serine protease	95.24
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	95.24
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	95.15
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	95.12
d1tbga_	340	beta1-subunit of the signal-transducing G protein	95.07
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	94.59
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	94.0
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	93.91
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	93.58
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	93.5
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	93.25
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	91.38
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	91.27
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	91.25
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	90.28
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	89.82
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	89.41
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	89.34
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	89.07
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	89.04
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	88.99
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	88.95
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	88.82
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	88.76
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	88.04
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	87.99
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	86.99
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	86.54
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	85.86
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	85.56
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	85.35
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	84.86
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	84.66
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	84.42
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	84.1
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	81.33
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	80.89

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-46  Score=366.84  Aligned_cols=255  Identities=34%  Similarity=0.709  Sum_probs=234.5

Q ss_pred             CEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC----cceEEEcCCCCCcce
Q psy952           17 PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST----EKERVIRHDSHGLEG   92 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~----~~~~i~~~~~~~p~g   92 (573)
                      +||||++++.|+++++++.+++.+++++..+.+|+||+.+++|||+|...+.|+++++++.    ..++++..++..|.|
T Consensus         2 ~fLl~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           2 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             CEEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             CEEEEECCCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            6999999999999999999988888899999999999999999999999999999999874    456677778899999


Q ss_pred             eEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec
Q psy952           93 LAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH  171 (573)
Q Consensus        93 lavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~  171 (573)
                      |||||.+++|||+|...++|++++++|..+++++ ..+..|++|+|||.+|+|||++++..++|+|++|||+.+++++  
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~--  159 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV--  159 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE--
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc--
Confidence            9999999999999999999999999999987766 5788899999999999999999988889999999999999999  


Q ss_pred             CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCC-ccceeEEEeeeCCeEEEecCCCCceEEEeccCC
Q psy952          172 EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLFEDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       172 ~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~-~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g  250 (573)
                      ...+..|+||++|+.+++|||+|...++|++++++|+++++++... .+.+|++|++++++|||+|+.+++|++++|.+|
T Consensus       160 ~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCC
Confidence            7889999999999999999999999999999999999988877642 368999999999999999999999999999999


Q ss_pred             cceEEEcccCCCceeeeeeecCC
Q psy952          251 RDYRVLRNTTHRPYDIHVYHPLK  273 (573)
Q Consensus       251 ~~~~~l~~~~~~p~~i~v~~~~~  273 (573)
                      +..+++...+..|++|+|+||.+
T Consensus       240 ~~~~~~~~~~~~p~~i~v~~~~~  262 (266)
T d1ijqa1         240 SDVNLLAENLLSPEDMVLFHNLT  262 (266)
T ss_dssp             CCCEEEECSCSCCCCEEEESGGG
T ss_pred             cceEEEEcCCCCceEEEEECCcc
Confidence            99999998889999999999863

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.1e-45  Score=356.84  Aligned_cols=252  Identities=27%  Similarity=0.549  Sum_probs=229.7

Q ss_pred             CEEEEEecccEEEEEcCCCcee------ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           17 PWLIFSNKYYVRNMSLDATQYS------LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l~g~~~~------~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      .||||++++.|++++|++....      .+......+.|||||+.+++|||+|...+.|+++.++|+..++++..++..|
T Consensus         2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p   81 (263)
T d1npea_           2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (263)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             CEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence            4999999999999999987543      2334456688999999999999999999999999999999998988888999


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRI  168 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l  168 (573)
                      .+|||||.+++|||++...++|.+++++|..+++|+ ..+..|++|||||.+|+|||++++. .++|+|++|||+.++.+
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i  161 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL  161 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceee
Confidence            999999999999999999999999999999988877 4678999999999999999999874 56899999999999999


Q ss_pred             EecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEecc
Q psy952          169 LTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       169 ~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~  248 (573)
                      +  ...+..|+|||||+.+++|||+|.+.++|++++++|..+++++.+  +.+|++|++++++||||||.+++|++++|.
T Consensus       162 ~--~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~--~~~P~~lav~~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         162 A--QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             E--CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC--CCSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             e--eecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC--CCCcEEEEEECCEEEEEECCCCEEEEEECC
Confidence            9  789999999999999999999999999999999999999988876  689999999999999999999999999999


Q ss_pred             CCcceEEEc-ccCCCceeeeeeecC
Q psy952          249 NGRDYRVLR-NTTHRPYDIHVYHPL  272 (573)
Q Consensus       249 ~g~~~~~l~-~~~~~p~~i~v~~~~  272 (573)
                      +|+..+++. .....|++|+|+|+.
T Consensus       238 ~g~~~~~~~~~~~~~~~gi~v~~~~  262 (263)
T d1npea_         238 ISKEMDTFHPHKQTRLYGITIALSQ  262 (263)
T ss_dssp             TTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             CCccceEECCCCCCCcceEEEeCCC
Confidence            998887664 556789999999974

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-27  Score=233.09  Aligned_cols=208  Identities=16%  Similarity=0.291  Sum_probs=179.4

Q ss_pred             CCCEEEEEe--cccEEEEEcCCCceeecc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952           15 IKPWLIFSN--KYYVRNMSLDATQYSLVH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLE   91 (573)
Q Consensus        15 ~~~~l~~s~--~~~I~~i~l~g~~~~~~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~   91 (573)
                      ....|++++  .+.|+++.++|...+.++ .++..|.+||+|+.+++|||+|...++|.+++++|...++++..++..|.
T Consensus        46 ~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~  125 (263)
T d1npea_          46 VDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR  125 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE
T ss_pred             CCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCc
Confidence            456788876  578999999987665444 56788999999999999999999999999999999988888888889999


Q ss_pred             eeEEeecCCcEEEEeCCC--CeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEE
Q psy952           92 GLAVDWVGRKLYWLDRHS--KQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI  168 (573)
Q Consensus        92 glavD~~~~~LY~td~~~--~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l  168 (573)
                      +|++|+..+.|||++.+.  .+|++++++|..+++++ .++..|.|||||+..+.|||+|.+ ..+|++++++|..++++
T Consensus       126 ~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~-~~~I~~~~~~g~~~~~v  204 (263)
T d1npea_         126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAG-THRAECLNPAQPGRRKV  204 (263)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTEEEEEEE
T ss_pred             EEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCC-CCEEEEEECCCCCeEEE
Confidence            999999999999999754  46999999999988877 578899999999999999999965 67999999999998888


Q ss_pred             EecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE-EEEEeCCccceeEEEeeeC
Q psy952          169 LTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK-HIVISGQKVPHVFALTLFE  229 (573)
Q Consensus       169 ~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~~  229 (573)
                      +   ..+..|.||+++  +++|||+|+..++|.++++.+... +++.... ...|+||++.-
T Consensus       205 ~---~~~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~-~~~~~gi~v~~  260 (263)
T d1npea_         205 L---EGLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL  260 (263)
T ss_dssp             E---ECCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred             E---CCCCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCC-CCCcceEEEeC
Confidence            7   567889999998  899999999999999999976554 4444333 57899999753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.2e-26  Score=224.42  Aligned_cols=210  Identities=20%  Similarity=0.357  Sum_probs=176.1

Q ss_pred             CCCEEEEEe--cccEEEEEcCCCc-----eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC
Q psy952           15 IKPWLIFSN--KYYVRNMSLDATQ-----YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS   87 (573)
Q Consensus        15 ~~~~l~~s~--~~~I~~i~l~g~~-----~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~   87 (573)
                      ....|++++  .+.|+++.+++..     ..++...+..|.+||+|+.+++|||+|...++|.+++++|.....++..++
T Consensus        40 ~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~  119 (266)
T d1ijqa1          40 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG  119 (266)
T ss_dssp             TTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT
T ss_pred             CCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCC
Confidence            346788886  4679999998643     234456678899999999999999999999999999999998888888888


Q ss_pred             CCcceeEEeecCCcEEEEeCCC-CeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc
Q psy952           88 HGLEGLAVDWVGRKLYWLDRHS-KQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF  165 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~~~-~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~  165 (573)
                      ..|.+|++|+..+.|||++... .+|++++++|+.+++++ ..+..|.|||||+.++.|||+|.. ..+|++++++|+.+
T Consensus       120 ~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~-~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         120 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK-LHSISSIDVNGGNR  198 (266)
T ss_dssp             CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT-TTEEEEEETTSCSC
T ss_pred             CCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCC-cCEEEEEECCCCCE
Confidence            8999999999999999999654 58999999999998887 578899999999999999999965 67999999999998


Q ss_pred             EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCCccceeEEEeeeC
Q psy952          166 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQKVPHVFALTLFE  229 (573)
Q Consensus       166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~  229 (573)
                      ++++.....+..|.+|+++  +++|||+|+..++|+++++. |...+++..+  +..|.+|.++.
T Consensus       199 ~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~--~~~p~~i~v~~  259 (266)
T d1ijqa1         199 KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAEN--LLSPEDMVLFH  259 (266)
T ss_dssp             EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEECS--CSCCCCEEEES
T ss_pred             EEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEcC--CCCceEEEEEC
Confidence            8887544557789999998  79999999999999999865 5566666554  67899998764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=1.8e-21  Score=188.91  Aligned_cols=225  Identities=15%  Similarity=0.214  Sum_probs=175.8

Q ss_pred             CCCEEEEEe---cccEEEEEcCCCceeec-ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952           15 IKPWLIFSN---KYYVRNMSLDATQYSLV-HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL   90 (573)
Q Consensus        15 ~~~~l~~s~---~~~I~~i~l~g~~~~~~-~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p   90 (573)
                      ++..+++++   ...|.++...+...... ...+..|.+|++++ +++|||+|...+.|+ +..++.....+...++..|
T Consensus        23 ~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~-~~~~~~~~~~~~~~~~~~p  100 (260)
T d1rwia_          23 SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVT-LAAGSNNQTVLPFDGLNYP  100 (260)
T ss_dssp             TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEE-ECTTCSCCEECCCCSCCSE
T ss_pred             CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceee-eeeeccceeeeeeeeeeec
Confidence            445566654   24677777766544433 34567799999996 678999998876665 4444545444444557899


Q ss_pred             ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE
Q psy952           91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL  169 (573)
Q Consensus        91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~  169 (573)
                      .+||+|. .++|||+|...+++.+++..+....... .++..|++|++++ .|.||++++. ..+|.+++++|....++.
T Consensus       101 ~~iavd~-~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~~~v~~~~-~~~i~~~d~~~~~~~~~~  177 (260)
T d1rwia_         101 EGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN-SGNVYVTDTD-NNRVVKLEAESNNQVVLP  177 (260)
T ss_dssp             EEEEECT-TCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECT-TCCEEEEEGG-GTEEEEECTTTCCEEECC
T ss_pred             ccccccc-cceeEeeccccccccccccccceeeeeeecccCCcceeeecC-CCCEeeeccc-cccccccccccceeeeee
Confidence            9999997 6689999999999999999988766654 5788899999999 6789999975 678999999998877665


Q ss_pred             ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC-CeEEEecCCCCceEEEecc
Q psy952          170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE-DHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       170 ~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~~~~~~  248 (573)
                        ...+..|.||++|+ +++|||+|...++|.+++.++....++.... +..|.+|+++. +.|||+|+.+++|.+++..
T Consensus       178 --~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~-~~~P~~i~~d~~g~l~vad~~~~rI~~i~~~  253 (260)
T d1rwia_         178 --FTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTSTVLPFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  253 (260)
T ss_dssp             --CSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCCEECCCCS-CCCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             --ccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeEEEEccCC-CCCeEEEEEeCCCCEEEEECCCCEEEEEeCC
Confidence              57889999999995 5789999999999999999988776665444 78999999974 6899999999999998754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.87  E-value=5.2e-21  Score=185.54  Aligned_cols=216  Identities=15%  Similarity=0.243  Sum_probs=167.5

Q ss_pred             cceEEEEEEcCCCEEEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee
Q psy952           45 LNVVAMDFHYKENRFYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK  123 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~  123 (573)
                      ..|.+|++|+ ++.||+++.. .++|.++...+.....+...++..|.|||+|+ .++|||+|...+.|.+ ..++....
T Consensus        14 ~~P~~vavd~-dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~-~~~~~~~~   90 (260)
T d1rwia_          14 LSPSGVAVDS-AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTL-AAGSNNQT   90 (260)
T ss_dssp             CCEEEEEECT-TCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEE-CTTCSCCE
T ss_pred             CCCCEEEEcC-CCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeee-eeecccee
Confidence            3699999995 6889999865 46889888877665555555678999999996 5789999987766544 44454444


Q ss_pred             Eec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952          124 TLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS  202 (573)
Q Consensus       124 ~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  202 (573)
                      ++. ..+..|++||+|+ .+.|||++.. ..++.+...++.....+.  ...+..|.+|++++ +++||+++...++|.+
T Consensus        91 ~~~~~~~~~p~~iavd~-~g~i~v~d~~-~~~~~~~~~~~~~~~~~~--~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~  165 (260)
T d1rwia_          91 VLPFDGLNYPEGLAVDT-QGAVYVADRG-NNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDN-SGNVYVTDTDNNRVVK  165 (260)
T ss_dssp             ECCCCSCCSEEEEEECT-TCCEEEEEGG-GTEEEEECTTCSSCEECC--CCSCCSCCEEEECT-TCCEEEEEGGGTEEEE
T ss_pred             eeeeeeeeecccccccc-cceeEeeccc-cccccccccccceeeeee--ecccCCcceeeecC-CCCEeeeccccccccc
Confidence            433 4678899999999 6789999954 678999999998876665  57789999999996 6689999999999999


Q ss_pred             EeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE-cccCCCceeeeeee
Q psy952          203 VDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL-RNTTHRPYDIHVYH  270 (573)
Q Consensus       203 ~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l-~~~~~~p~~i~v~~  270 (573)
                      ++.++..+.++.... +..|.+|+++ ++.|||+|+.+++|++++. ++....++ ...+..|.+|++..
T Consensus       166 ~d~~~~~~~~~~~~~-~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~-~~~~~~~~~~~~~~~P~~i~~d~  233 (260)
T d1rwia_         166 LEAESNNQVVLPFTD-ITAPWGIAVDEAGTVYVTEHNTNQVVKLLA-GSTTSTVLPFTGLNTPLAVAVDS  233 (260)
T ss_dssp             ECTTTCCEEECCCSS-CCSEEEEEECTTCCEEEEETTTTEEEEECT-TCSCCEECCCCSCCCEEEEEECT
T ss_pred             cccccceeeeeeccc-cCCCccceeeeeeeeeeeecCCCEEEEEeC-CCCeEEEEccCCCCCeEEEEEeC
Confidence            999998887765544 7899999996 5689999999999999975 44444444 34567899988753

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.82  E-value=1.2e-18  Score=174.03  Aligned_cols=205  Identities=13%  Similarity=0.159  Sum_probs=161.0

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC----CCeEEEEEcCCC
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH----SKQLDVAELDGT  120 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~----~~~I~~~~ldg~  120 (573)
                      ..+.|++||. +++|||+|...++|+|+++++.....++......|.||+++. .++||+++..    .+.|...+..+.
T Consensus        40 ~~lEG~~~D~-~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          40 LQLEGLNFDR-QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             cCcEeCEECC-CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence            3468999996 567999999999999999998766555555557899999996 5789999853    456888888877


Q ss_pred             ceeEecc---CCCCcceEEEeCCCceEEEEecCC-----cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEE
Q psy952          121 NRKTLKT---AIQDPRGITLHPGIGYVYFSSWNL-----QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW  192 (573)
Q Consensus       121 ~~~~l~~---~~~~P~~Iavdp~~g~LYwtd~~~-----~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw  192 (573)
                      ....++.   ....|+++++++ .|.|||++...     ...|++++.+|...+.+.   ..+..|+||+++++++.||+
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~---~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII---QNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE---EEESSEEEEEECTTSSEEEE
T ss_pred             eeeeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEe---eccceeeeeeeccccceEEE
Confidence            7666553   455699999999 68899998642     346999999998777666   57889999999999999999


Q ss_pred             EeCCCCeEEEEeCCC--CcEEE-----EEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          193 ADAHLDYIASVDLDG--KHKHI-----VISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       193 ~D~~~~~I~~~~~dG--~~~~~-----l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      +|...++|++++++.  .....     .........|.||+++ ++.||++++..++|.++++ +|+....+
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i  264 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI  264 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred             ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE
Confidence            999999999998764  32221     1111115679999996 5789999999999999996 67766555

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.80  E-value=4.6e-18  Score=169.11  Aligned_cols=226  Identities=17%  Similarity=0.227  Sum_probs=171.5

Q ss_pred             ceeecccCCcceEEEEEEcCCCEEEEEECC-------CCeEEEEEcCCCcceEEEcCC----CCCcceeEEeecCCcEEE
Q psy952           36 QYSLVHQDLLNVVAMDFHYKENRFYFADVA-------AKTIYRSRVGSTEKERVIRHD----SHGLEGLAVDWVGRKLYW  104 (573)
Q Consensus        36 ~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~-------~~~I~~~~~~g~~~~~i~~~~----~~~p~glavD~~~~~LY~  104 (573)
                      .++.+..++..+.|++||+ +++||+++..       .++|+|+++++...+.+....    ...|.||++|..++.||+
T Consensus         9 ~~~~v~~~~~g~EGpa~d~-dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~v   87 (314)
T d1pjxa_           9 LFTKVTEDIPGAEGPVFDK-NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV   87 (314)
T ss_dssp             CCEEEECCCTTCEEEEECT-TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE
T ss_pred             ceEEeecCCCCCeEeEEeC-CCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEE
Confidence            5677788899999999996 6789998765       367999999887665543321    246999999988888999


Q ss_pred             EeCCCCeEEEEEcCCCceeEecc-----CCCCcceEEEeCCCceEEEEecCC--------------cCeEEEEeccCCCc
Q psy952          105 LDRHSKQLDVAELDGTNRKTLKT-----AIQDPRGITLHPGIGYVYFSSWNL--------------QAYIGKIGMDGSNF  165 (573)
Q Consensus       105 td~~~~~I~~~~ldg~~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~~--------------~~~I~r~~ldG~~~  165 (573)
                      ++.. +.|.+++++|....++..     .+..|++|++|+ .|.||+|+...              .++|++++.+|...
T Consensus        88 ad~~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~  165 (314)
T d1pjxa_          88 ADMR-LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI  165 (314)
T ss_dssp             EETT-TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE
T ss_pred             EECC-CeEEEEeCCCcEEEEEeccccccccCCCcEEEECC-CCCEEEecCccCcccccccceeccCCceEEEEeecCcee
Confidence            9864 579999999987665542     345699999999 68999998531              24799999998754


Q ss_pred             EEEEecCCCCCCCceEEEeccCC----eEEEEeCCCCeEEEEeCCCCc----EEEEEe--CCccceeEEEeee-CCeEEE
Q psy952          166 TRILTHEDDIAWPNALTLDYFTE----RLYWADAHLDYIASVDLDGKH----KHIVIS--GQKVPHVFALTLF-EDHIYW  234 (573)
Q Consensus       166 ~~l~~~~~~l~~P~glaiD~~~~----~LYw~D~~~~~I~~~~~dG~~----~~~l~~--~~~~~~p~~ia~~-~~~lyw  234 (573)
                      ++ .   ..+..|+||++++..+    +||++|...++|+++++++..    ++++..  ......|.||+++ ++.||+
T Consensus       166 ~~-~---~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyV  241 (314)
T d1pjxa_         166 QV-D---TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLV  241 (314)
T ss_dssp             EE-E---EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEE
T ss_pred             Ee-e---CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEE
Confidence            43 3   4688899999987654    799999999999998876432    233332  2124579999995 678999


Q ss_pred             ecCCCCceEEEeccCCcceEEEcccCCCceeeee
Q psy952          235 TDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       235 td~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v  268 (573)
                      +++..++|+++++.+|.....+......|..+++
T Consensus       242 a~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~af  275 (314)
T d1pjxa_         242 ANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF  275 (314)
T ss_dssp             EEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred             EEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEE
Confidence            9999999999998777666666554556766665

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=5.3e-17  Score=158.55  Aligned_cols=221  Identities=12%  Similarity=0.154  Sum_probs=173.1

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-----CCCCcceeEEeecCCcEEEEe-CCCCeEEEEEc
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-----DSHGLEGLAVDWVGRKLYWLD-RHSKQLDVAEL  117 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-----~~~~p~glavD~~~~~LY~td-~~~~~I~~~~l  117 (573)
                      +..|.+|++|+ ++.||++|..+++|++++.+|.....+...     ....|.+++++...+.++|+. ...++|.+.+.
T Consensus        22 f~~P~gvavd~-dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~  100 (279)
T d1q7fa_          22 FTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ  100 (279)
T ss_dssp             BSCEEEEEECT-TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred             ECCccEEEEcC-CCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc
Confidence            66799999996 678999999999999999998765544322     234789999887777766654 45678999999


Q ss_pred             CCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952          118 DGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH  196 (573)
Q Consensus       118 dg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~  196 (573)
                      +|.....+. ..+..|.+||+++ .|.||+++.. ..+|.+.+.+|+....+.. ...+..|.+|++| .+++||+++..
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~-~~~~~~~~~~g~~~~~~g~-~~~~~~~~~i~~d-~~g~i~v~d~~  176 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDN-KGRIIVVECK-VMRVIIFDQNGNVLHKFGC-SKHLEFPNGVVVN-DKQEIFISDNR  176 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECT-TSCEEEEETT-TTEEEEECTTSCEEEEEEC-TTTCSSEEEEEEC-SSSEEEEEEGG
T ss_pred             cccceeecCCCcccccceecccc-CCcEEEEeec-cceeeEeccCCceeecccc-cccccccceeeec-cceeEEeeecc
Confidence            998877765 4677899999998 6789999854 6789999999987666542 4568899999999 56799999999


Q ss_pred             CCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCC-ceEEEeccCCcceEEEccc--CCCceeeeeee
Q psy952          197 LDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTK-SINRADKFNGRDYRVLRNT--THRPYDIHVYH  270 (573)
Q Consensus       197 ~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~-~I~~~~~~~g~~~~~l~~~--~~~p~~i~v~~  270 (573)
                      .++|.+++.+|.....+.....+.+|.||+++ ++.||++|+..+ +|..++ .+|+.+.++...  ...|.+|++-.
T Consensus       177 ~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~  253 (279)
T d1q7fa_         177 AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMD  253 (279)
T ss_dssp             GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEET
T ss_pred             ccceeeeecCCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeC
Confidence            99999999999877766543347899999995 578999998654 576665 578766666443  34688877643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.76  E-value=2.1e-16  Score=154.27  Aligned_cols=225  Identities=11%  Similarity=0.107  Sum_probs=175.8

Q ss_pred             CCEEEEEe--cccEEEEEcCCCceeecc------cCCcceEEEEEEcCCCEEEEEE-CCCCeEEEEEcCCCcceEEEcCC
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQYSLVH------QDLLNVVAMDFHYKENRFYFAD-VAAKTIYRSRVGSTEKERVIRHD   86 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~------~~~~~~~~v~~d~~~~~ly~~d-~~~~~I~~~~~~g~~~~~i~~~~   86 (573)
                      +.-|++++  .+.|++++++|.-.....      .....|.+++++...+.++|+. ..++.|.+++.+|.....+....
T Consensus        33 dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~  112 (279)
T d1q7fa_          33 QNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI  112 (279)
T ss_dssp             TCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT
T ss_pred             CCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccccceeecCCCc
Confidence            34567775  578999999886443221      1234588999988877777765 45678999999887766665666


Q ss_pred             CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                      +..|.++|+|. .++||+++...++|.+++.+|+....+.  ..+..|.+|++++ ++.||++++. ...|.+.+.+|..
T Consensus       113 ~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~-~g~i~v~d~~-~~~V~~~d~~G~~  189 (279)
T d1q7fa_         113 LQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVND-KQEIFISDNR-AHCVKVFNYEGQY  189 (279)
T ss_dssp             CSCEEEEEECT-TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECS-SSEEEEEEGG-GTEEEEEETTCCE
T ss_pred             ccccceecccc-CCcEEEEeeccceeeEeccCCceeecccccccccccceeeecc-ceeEEeeecc-ccceeeeecCCce
Confidence            78999999995 6789999999999999999998877654  4678899999998 6899999964 6789999999987


Q ss_pred             cEEEEecCCCCCCCceEEEeccCCeEEEEeCCC-CeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCce
Q psy952          165 FTRILTHEDDIAWPNALTLDYFTERLYWADAHL-DYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSI  242 (573)
Q Consensus       165 ~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I  242 (573)
                      ...+.. ...+..|.||++|+ +++||++|... .+|..++.+|.....+........|.+|++. ++.||++++ +++|
T Consensus       190 ~~~~g~-~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~-n~~v  266 (279)
T d1q7fa_         190 LRQIGG-EGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVALMDDGSVVLASK-DYRL  266 (279)
T ss_dssp             EEEESC-TTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEEEETTTEEEEEET-TTEE
T ss_pred             eeeecc-cccccCCccccccc-CCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeC-CCeE
Confidence            666542 34688899999996 55799999865 4799999999988777765436789999996 568999985 6777


Q ss_pred             EEEe
Q psy952          243 NRAD  246 (573)
Q Consensus       243 ~~~~  246 (573)
                      ....
T Consensus       267 ~~fr  270 (279)
T d1q7fa_         267 YIYR  270 (279)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6664

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.76  E-value=7.5e-17  Score=160.24  Aligned_cols=217  Identities=13%  Similarity=0.098  Sum_probs=160.4

Q ss_pred             ccEEEEEcCCCceeeccc-----CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC----CCCCcceeEE
Q psy952           25 YYVRNMSLDATQYSLVHQ-----DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH----DSHGLEGLAV   95 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~-----~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~----~~~~p~glav   95 (573)
                      ++|+++++++...+....     ....|.||++++..+.||+++.. +.|++++.+|...+.+...    .+..|++|++
T Consensus        46 g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~-~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~  124 (314)
T d1pjxa_          46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAF  124 (314)
T ss_dssp             CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEE
T ss_pred             CEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECC-CeEEEEeCCCcEEEEEeccccccccCCCcEEEE
Confidence            369999998776544322     23358999999988899999865 4699999988654433221    2457999999


Q ss_pred             eecCCcEEEEeCC---------------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCc----eEEEEecCCcCeEE
Q psy952           96 DWVGRKLYWLDRH---------------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIG----YVYFSSWNLQAYIG  156 (573)
Q Consensus        96 D~~~~~LY~td~~---------------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g----~LYwtd~~~~~~I~  156 (573)
                      |. .++||+||..               .++|++++.+|... .+...+..|+||+++|...    +||+++.. ..+|+
T Consensus       125 d~-~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~-~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~-~~~i~  201 (314)
T d1pjxa_         125 DY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETP-TKKLW  201 (314)
T ss_dssp             CT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETT-TTEEE
T ss_pred             CC-CCCEEEecCccCcccccccceeccCCceEEEEeecCcee-EeeCCcceeeeeEECCCCCcceeEEEEEeec-ccceE
Confidence            96 5799999853               34799999998754 4556788899999987543    79999964 67899


Q ss_pred             EEeccCCC----cEEEEec-CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC--
Q psy952          157 KIGMDGSN----FTRILTH-EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE--  229 (573)
Q Consensus       157 r~~ldG~~----~~~l~~~-~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~--  229 (573)
                      +.++++..    ++++... ......|.||++| .+++||++++..++|.+++.+|......+... ...|.++++-.  
T Consensus       202 ~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD-~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p-~~~~t~~afg~d~  279 (314)
T d1pjxa_         202 SYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNNLLVANWGSSHIEVFGPDGGQPKMRIRCP-FEKPSNLHFKPQT  279 (314)
T ss_dssp             EEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCCEEEEEETTTEEEEECTTCBSCSEEEECS-SSCEEEEEECTTS
T ss_pred             EeeccCccccceeeEEEEccccccccceeeEEe-cCCcEEEEEcCCCEEEEEeCCCCEEEEEEECC-CCCEEEEEEeCCC
Confidence            98876443    2223311 1234468999999 57899999999999999999976654434332 46899999843  


Q ss_pred             CeEEEecCCCCceEEEec
Q psy952          230 DHIYWTDWNTKSINRADK  247 (573)
Q Consensus       230 ~~lywtd~~~~~I~~~~~  247 (573)
                      +.||+|+..+++|++++.
T Consensus       280 ~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         280 KTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             SEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEECCCCcEEEEEC
Confidence            469999999999999984

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.68  E-value=6.4e-15  Score=146.45  Aligned_cols=227  Identities=10%  Similarity=0.122  Sum_probs=165.4

Q ss_pred             CCEEEEEe--cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECC----CCeEEEEEcCCCcceEEEcC--C
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVA----AKTIYRSRVGSTEKERVIRH--D   86 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~----~~~I~~~~~~g~~~~~i~~~--~   86 (573)
                      ..-|++++  .++|+|+++++.... ........|.+|++++ +++||+++..    ...|.+++..+.....++..  .
T Consensus        50 ~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  128 (319)
T d2dg1a1          50 QGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST  128 (319)
T ss_dssp             TSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS
T ss_pred             CCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCc
Confidence            44577776  578999999887543 3445666799999996 6799999864    35688888877766655532  3


Q ss_pred             CCCcceeEEeecCCcEEEEeCC------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRH------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM  160 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l  160 (573)
                      ...|.++++|. .++|||+|..      .+.|++++.+|...+.+...+..|+||+++|..+.||+++.. ..+|+++++
T Consensus       129 ~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~-~~~I~~~d~  206 (319)
T d2dg1a1         129 AYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT-ANRLHRIAL  206 (319)
T ss_dssp             CCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG-GTEEEEEEE
T ss_pred             ccCCcceeEEe-ccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc-CCceEEEEE
Confidence            46799999997 5679999864      346999999998888888888899999999988899999964 678999987


Q ss_pred             cCC--CcEEE----EecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCC----ccceeEEEeee--
Q psy952          161 DGS--NFTRI----LTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ----KVPHVFALTLF--  228 (573)
Q Consensus       161 dG~--~~~~l----~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~----~~~~p~~ia~~--  228 (573)
                      +..  .....    .........|.||++| .+++||++++..++|.+++.+|.....|....    ....+..+++.  
T Consensus       207 ~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD-~~G~l~Va~~~~g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~  285 (319)
T d2dg1a1         207 EDDGVTIQPFGATIPYYFTGHEGPDSCCID-SDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPG  285 (319)
T ss_dssp             CTTSSSEEEEEEEEEEECCSSSEEEEEEEB-TTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred             cCCCceeccccceeeeccCCccceeeeeEc-CCCCEEEEEcCCCEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCC
Confidence            643  22211    1113445679999999 57889999999999999999998776665321    12345666663  


Q ss_pred             CCeEEEecC-----CCCceEEEe
Q psy952          229 EDHIYWTDW-----NTKSINRAD  246 (573)
Q Consensus       229 ~~~lywtd~-----~~~~I~~~~  246 (573)
                      .+.+|++..     ..+.|++++
T Consensus       286 ~~~~~~t~~~~~~~~~g~l~~~~  308 (319)
T d2dg1a1         286 TNQLIICSNDIEMGGGSMLYTVN  308 (319)
T ss_dssp             SCEEEEEEECGGGTCCEEEEEEE
T ss_pred             CCEEEEEcCCCCcCCceeEEEEe
Confidence            346777632     234466654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.67  E-value=8.5e-15  Score=143.79  Aligned_cols=208  Identities=14%  Similarity=0.160  Sum_probs=155.7

Q ss_pred             EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc
Q psy952           48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT  127 (573)
Q Consensus        48 ~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~  127 (573)
                      .|..||.+++.|||+|+..++|+|++++++..+++.. . ..|.+|+++. .+.|+++..  +.|.++++.+...+.+..
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~-~-~~~~~i~~~~-dg~l~va~~--~gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHAL-P-FMGSALAKIS-DSKQLIASD--DGLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEEC-S-SCEEEEEEEE-TTEEEEEET--TEEEEEETTTCCEEEEEC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEEC-C-CCcEEEEEec-CCCEEEEEe--CccEEeecccceeeEEee
Confidence            7888999999999999999999999998876654433 3 4788999985 567888763  579999998777666652


Q ss_pred             -----CCCCcceEEEeCCCceEEEEecCC-----cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952          128 -----AIQDPRGITLHPGIGYVYFSSWNL-----QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL  197 (573)
Q Consensus       128 -----~~~~P~~Iavdp~~g~LYwtd~~~-----~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~  197 (573)
                           ....|+++++|| .|.||+++...     ...+++.. +|.. ..+.   ..+..|+|+++++.++.|||+|+..
T Consensus        96 ~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g~~-~~~~---~~~~~~Ng~~~s~d~~~l~~~dt~~  169 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KGKV-TKLF---ADISIPNSICFSPDGTTGYFVDTKV  169 (295)
T ss_dssp             SSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TTEE-EEEE---EEESSEEEEEECTTSCEEEEEETTT
T ss_pred             eecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeec-CCcE-EEEe---eccCCcceeeecCCCceEEEeeccc
Confidence                 234589999999 68888887431     33566664 3433 3333   5678899999999999999999999


Q ss_pred             CeEEEEeCCCCc------EEEEEe-CCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeee
Q psy952          198 DYIASVDLDGKH------KHIVIS-GQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIH  267 (573)
Q Consensus       198 ~~I~~~~~dG~~------~~~l~~-~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~  267 (573)
                      ++|+++++|+..      +.+++. ......|.||+++ ++.||++.|..++|.++++ +|+....+.....+|..++
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~  246 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPA  246 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEE
T ss_pred             ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEE
Confidence            999999987532      333333 2225689999996 5689999999999999995 6777766654444555544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.61  E-value=7.4e-14  Score=137.39  Aligned_cols=213  Identities=13%  Similarity=0.065  Sum_probs=156.6

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-  122 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-  122 (573)
                      -..+.+|++++ +++||+++...++|++++.+|... .+.. ....|.+||+++ .++||+++...+.|.++++.+... 
T Consensus        27 ~~~~e~iAv~p-dG~l~vt~~~~~~I~~i~p~g~~~-~~~~-~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~  102 (302)
T d2p4oa1          27 NTFLENLASAP-DGTIFVTNHEVGEIVSITPDGNQQ-IHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGT  102 (302)
T ss_dssp             TCCEEEEEECT-TSCEEEEETTTTEEEEECTTCCEE-EEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSC
T ss_pred             CCCcCCEEECC-CCCEEEEeCCCCEEEEEeCCCCEE-EEEc-CCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccc
Confidence            34588999996 678999999999999999987643 3333 336899999997 567999998888888777654322 


Q ss_pred             -eEec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec--------CCCCCCCceEEEeccCCeEE
Q psy952          123 -KTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH--------EDDIAWPNALTLDYFTERLY  191 (573)
Q Consensus       123 -~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~--------~~~l~~P~glaiD~~~~~LY  191 (573)
                       ..+.  .....|++|++++ .|.+|+++.. ...|++.++++....+....        ...+..|+||+.|  ++.||
T Consensus       103 ~~~~~~~~~~~~~n~i~~~~-~g~~~v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~  178 (302)
T d2p4oa1         103 VETLLTLPDAIFLNGITPLS-DTQYLTADSY-RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLY  178 (302)
T ss_dssp             EEEEEECTTCSCEEEEEESS-SSEEEEEETT-TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEE
T ss_pred             eeeccccCCccccceeEEcc-CCCEEeeccc-cccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCcee
Confidence             2222  4566799999999 6899999864 67899999887765554321        2334567888887  78999


Q ss_pred             EEeCCCCeEEEEeCCCCcE----EEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE--cccCCCce
Q psy952          192 WADAHLDYIASVDLDGKHK----HIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL--RNTTHRPY  264 (573)
Q Consensus       192 w~D~~~~~I~~~~~dG~~~----~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l--~~~~~~p~  264 (573)
                      |++...++|++++.++...    ..+..   ...|.+|+++ ++.||++++..++|.+++. +|+...++  ...+..|.
T Consensus       179 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~~pdgia~d~dG~l~va~~~~~~V~~i~p-~G~~~~~~~~~~~~~~pt  254 (302)
T d2p4oa1         179 VSNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAP-DRSTTIIAQAEQGVIGST  254 (302)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECT-TCCEEEEECGGGTCTTEE
T ss_pred             eecCCCCeEEeccccccccccccccccC---CCCCcceEECCCCCEEEEEcCCCcEEEECC-CCCEEEEEecCCCCCCce
Confidence            9999999999999886432    22222   3578999996 5789999999999999974 55443333  23455676


Q ss_pred             eeee
Q psy952          265 DIHV  268 (573)
Q Consensus       265 ~i~v  268 (573)
                      .+++
T Consensus       255 ~vaf  258 (302)
T d2p4oa1         255 AVAF  258 (302)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.54  E-value=5.7e-13  Score=130.92  Aligned_cols=217  Identities=13%  Similarity=0.081  Sum_probs=156.8

Q ss_pred             CCCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc--ceEEE-cCCCCC
Q psy952           15 IKPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE--KERVI-RHDSHG   89 (573)
Q Consensus        15 ~~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~i~-~~~~~~   89 (573)
                      +..-|++++  .+.|++++.+|.. +.+......+.+|++++ +++||+++...+.|+++.+.+..  ...+. ......
T Consensus        37 pdG~l~vt~~~~~~I~~i~p~g~~-~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (302)
T d2p4oa1          37 PDGTIFVTNHEVGEIVSITPDGNQ-QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIF  114 (302)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCCE-EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSC
T ss_pred             CCCCEEEEeCCCCEEEEEeCCCCE-EEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEecccccceeeccccCCccc
Confidence            455677776  4789999988864 34445557899999997 56799999988888888775532  22232 334578


Q ss_pred             cceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-----------cCCCCcceEEEeCCCceEEEEecCCcCeEEEE
Q psy952           90 LEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-----------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI  158 (573)
Q Consensus        90 p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-----------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~  158 (573)
                      |.+|++|. .+++|+++...+.|+++++.+....+..           .....|.+|+.+.  ++|||++.. ..+|+++
T Consensus       115 ~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~--~~l~~~~~~-~~~i~~~  190 (302)
T d2p4oa1         115 LNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG--NFLYVSNTE-KMLLLRI  190 (302)
T ss_dssp             EEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET--TEEEEEETT-TTEEEEE
T ss_pred             cceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC--CceeeecCC-CCeEEec
Confidence            99999995 6799999999999999999876654432           1334588888874  789999964 6799999


Q ss_pred             eccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-----CCeEE
Q psy952          159 GMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-----EDHIY  233 (573)
Q Consensus       159 ~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-----~~~ly  233 (573)
                      .+++...............|.||++|. +++||+++...++|.+++.+|....+......+..|.++++.     .+.||
T Consensus       191 ~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Ly  269 (302)
T d2p4oa1         191 PVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIY  269 (302)
T ss_dssp             EBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEECCSTTTTTEEE
T ss_pred             cccccccccccccccCCCCCcceEECC-CCCEEEEEcCCCcEEEECCCCCEEEEEecCCCCCCceEEEEcCCCCCCCEEE
Confidence            987653221100012356799999995 568999999999999999998655443322126789999983     35699


Q ss_pred             EecCC
Q psy952          234 WTDWN  238 (573)
Q Consensus       234 wtd~~  238 (573)
                      ++...
T Consensus       270 vtt~~  274 (302)
T d2p4oa1         270 VVTNG  274 (302)
T ss_dssp             EEECT
T ss_pred             EECCC
Confidence            98654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.52  E-value=4.7e-12  Score=123.86  Aligned_cols=212  Identities=10%  Similarity=0.016  Sum_probs=155.4

Q ss_pred             CCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC----CCCC
Q psy952           16 KPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH----DSHG   89 (573)
Q Consensus        16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~----~~~~   89 (573)
                      ...|+|++  ...|+++++++...+.... -..+.+++++. ++.|+++..  ..|+++++++...+.+...    ...+
T Consensus        29 ~~~l~wvDi~~~~I~r~d~~~g~~~~~~~-~~~~~~i~~~~-dg~l~va~~--~gl~~~d~~tg~~~~l~~~~~~~~~~~  104 (295)
T d2ghsa1          29 SGTAWWFNILERELHELHLASGRKTVHAL-PFMGSALAKIS-DSKQLIASD--DGLFLRDTATGVLTLHAELESDLPGNR  104 (295)
T ss_dssp             TTEEEEEEGGGTEEEEEETTTTEEEEEEC-SSCEEEEEEEE-TTEEEEEET--TEEEEEETTTCCEEEEECSSTTCTTEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCeEEEEEC-CCCcEEEEEec-CCCEEEEEe--CccEEeecccceeeEEeeeecCCCccc
Confidence            45678876  5789999998876654322 23577888885 678888763  4799999987777666532    1347


Q ss_pred             cceeEEeecCCcEEEEeCC------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           90 LEGLAVDWVGRKLYWLDRH------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        90 p~glavD~~~~~LY~td~~------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      |..+++|+ .++||+++..      .+.+++.. +| ..+.+...+..|+|+++++....|||++.. ..+|++.++|+.
T Consensus       105 ~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~-~g-~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~-~~~I~~~~~d~~  180 (295)
T d2ghsa1         105 SNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA-KG-KVTKLFADISIPNSICFSPDGTTGYFVDTK-VNRLMRVPLDAR  180 (295)
T ss_dssp             EEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE-TT-EEEEEEEEESSEEEEEECTTSCEEEEEETT-TCEEEEEEBCTT
T ss_pred             ceeeEECC-CCCEEEEeccccccccceeEeeec-CC-cEEEEeeccCCcceeeecCCCceEEEeecc-cceeeEeeeccc
Confidence            88999997 5679998742      23444443 33 445566778889999999999999999964 678999998754


Q ss_pred             C------cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC---CeEEE
Q psy952          164 N------FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE---DHIYW  234 (573)
Q Consensus       164 ~------~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~---~~lyw  234 (573)
                      .      +..++........|.||++| .+++||++.+..++|.+++.+|.....+...  ..+|..+++-+   +.||+
T Consensus       181 ~~~~~~~~~~~~~~~~~~g~pdG~~vD-~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP--~~~~T~~~FGG~d~~~Lyv  257 (295)
T d2ghsa1         181 TGLPTGKAEVFIDSTGIKGGMDGSVCD-AEGHIWNARWGEGAVDRYDTDGNHIARYEVP--GKQTTCPAFIGPDASRLLV  257 (295)
T ss_dssp             TCCBSSCCEEEEECTTSSSEEEEEEEC-TTSCEEEEEETTTEEEEECTTCCEEEEEECS--CSBEEEEEEESTTSCEEEE
T ss_pred             ccccccceEEEeccCcccccccceEEc-CCCCEEeeeeCCCceEEecCCCcEeeEecCC--CCceEEEEEeCCCCCEEEE
Confidence            2      33344223345579999999 5789999999999999999999887776543  46899999853   67999


Q ss_pred             ecCC
Q psy952          235 TDWN  238 (573)
Q Consensus       235 td~~  238 (573)
                      |...
T Consensus       258 Tta~  261 (295)
T d2ghsa1         258 TSAR  261 (295)
T ss_dssp             EEBC
T ss_pred             EECC
Confidence            9653

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.49  E-value=4e-11  Score=115.55  Aligned_cols=244  Identities=12%  Similarity=0.099  Sum_probs=179.0

Q ss_pred             CEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      .|+++++  .+.|..+++...+....+.....|.+|+|++.+++||+++...+.|..+++........+... ..|.+++
T Consensus         2 ~~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~-~~~~~~~   80 (301)
T d1l0qa2           2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVA   80 (301)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEE
T ss_pred             eEEEEEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc-ccccccc
Confidence            4777775  467999999877655444555679999999999999999999999999999765443333333 5899999


Q ss_pred             EeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD  174 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~  174 (573)
                      +++.++.+|++......+.+.++........+.....|..++++|....++.+... ...+...+.........+   ..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~  156 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNG-DKTVSVINTVTKAVINTV---SV  156 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEE---EC
T ss_pred             cccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeecc-ccceeeeeccccceeeec---cc
Confidence            99988899999988888999888776655555666779999999988888888743 445555555443333333   34


Q ss_pred             CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEec--CCCCceEEEeccCC
Q psy952          175 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTD--WNTKSINRADKFNG  250 (573)
Q Consensus       175 l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd--~~~~~I~~~~~~~g  250 (573)
                      ...|..+++.+....||++......+................  ...|.++++  .+..+|++.  ...+.|..++..++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV--EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             CCCceEEEeeccccceeeecccccccccccccceeeeecccc--cCCcceeeccccccccccccccceeeeeeeeecCCC
Confidence            566899999999999999998888887777776655444443  347888887  456787764  44567888887777


Q ss_pred             cceEEEcccCCCceeeee
Q psy952          251 RDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       251 ~~~~~l~~~~~~p~~i~v  268 (573)
                      +....+.. ...|.+|++
T Consensus       235 ~~~~~~~~-~~~~~~va~  251 (301)
T d1l0qa2         235 KITARIPV-GPDPAGIAV  251 (301)
T ss_dssp             EEEEEEEC-CSSEEEEEE
T ss_pred             eEEEEEcC-CCCEEEEEE
Confidence            66655543 235777665

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.44  E-value=6.6e-11  Score=113.95  Aligned_cols=244  Identities=14%  Similarity=0.139  Sum_probs=178.7

Q ss_pred             CEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      .+|+++.  .+.|+.+++........+.....+.++++++..+.+|++......+...++.+......+.. ...|..++
T Consensus        44 ~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  122 (301)
T d1l0qa2          44 TKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLA  122 (301)
T ss_dssp             SEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEE
T ss_pred             CEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccccccccccccccceeeecccccceeeeeccc-cccceEEE
Confidence            4666665  46899999986655444455567999999999999999999888999888876544333433 35788999


Q ss_pred             EeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD  174 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~  174 (573)
                      +.+.++.++++......+.+.+.........+.....|..+++.|..+.||++... ...+..............   ..
T Consensus       123 ~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~  198 (301)
T d1l0qa2         123 LSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFD-SMSISVIDTVTNSVIDTV---KV  198 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETT-TTEEEEEETTTTEEEEEE---EC
T ss_pred             eecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccc-ccccccccccceeeeecc---cc
Confidence            99889999999888888888888766655555666779999999999999999854 445555555544433333   33


Q ss_pred             CCCCceEEEeccCCeEEEEeC--CCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCC
Q psy952          175 IAWPNALTLDYFTERLYWADA--HLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNG  250 (573)
Q Consensus       175 l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g  250 (573)
                      ...|.++++++.+..+|++..  ..+.|..+++........+..  ...|.+|++  ++.+||++.+..++|...+..++
T Consensus       199 ~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~  276 (301)
T d1l0qa2         199 EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN  276 (301)
T ss_dssp             SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence            456899999999999999764  446899888765443322222  247899998  45679999999999999998888


Q ss_pred             cceEEEcccCCCceeeee
Q psy952          251 RDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       251 ~~~~~l~~~~~~p~~i~v  268 (573)
                      +.+.++..+. .|.++..
T Consensus       277 ~~~~~~~vg~-~P~~~g~  293 (301)
T d1l0qa2         277 TITATMAVGK-NPYASGQ  293 (301)
T ss_dssp             EEEEEEECSS-SEECCSS
T ss_pred             eEEEEEeCCC-CCcEeEE
Confidence            8777765433 5766543

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-12  Score=84.14  Aligned_cols=38  Identities=39%  Similarity=0.892  Sum_probs=35.1

Q ss_pred             CcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCCC
Q psy952          524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ  564 (573)
Q Consensus       524 ~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~  564 (573)
                      +|.+++|+|.++ +||+.+|+|||..||+|+|||.  +|.+
T Consensus         2 sC~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~--~C~n   39 (39)
T d1f8za_           2 TCRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEV--GCVN   39 (39)
T ss_dssp             CCCTTEEECSSS-CEEETTTSSSCCCCSTTSGGGS--SSCC
T ss_pred             CCCCCceEeCCC-CeEChhhcCCCCCcCCCCchhc--cCcC
Confidence            578999999999 9999999999999999999998  8853

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=6.3e-13  Score=85.59  Aligned_cols=37  Identities=38%  Similarity=0.916  Sum_probs=34.5

Q ss_pred             CcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       524 ~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      +|.+++|+|.+| .||+.+|+|||..||.|||||.  +|+
T Consensus         2 tC~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~--~Cp   38 (39)
T d2fcwb1           2 TCSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEA--SCP   38 (39)
T ss_dssp             CCCTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTT--THH
T ss_pred             cCCCCCEEcCCC-CEEcchhcCcCcCcCcCCchhc--CCC
Confidence            578899999998 9999999999999999999998  774

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=6.1e-13  Score=85.42  Aligned_cols=38  Identities=45%  Similarity=1.076  Sum_probs=33.9

Q ss_pred             CcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCC
Q psy952          524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC  562 (573)
Q Consensus       524 ~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c  562 (573)
                      +|.+++|+|.+| +|||..|+|||..||.|||||.+..|
T Consensus         2 tC~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~~~C   39 (39)
T d2fcwb2           2 TCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQRC   39 (39)
T ss_dssp             HCCTTEEECTTS-CEEEGGGTTSSSCCSTTCGGGCGGGC
T ss_pred             ccCCCceEcCCC-CeEChhhcCCCCCCCCCCCcCCCCcC
Confidence            478899999998 99999999999999999999984433

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.2e-12  Score=85.68  Aligned_cols=40  Identities=50%  Similarity=1.088  Sum_probs=36.1

Q ss_pred             CCCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCC
Q psy952          522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC  562 (573)
Q Consensus       522 ~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c  562 (573)
                      +..|.+++|+|.++ .||+.+|+|||..||.|||||.+..|
T Consensus         3 p~~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~~~C   42 (45)
T d1d2la_           3 PPQCQPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPALC   42 (45)
T ss_dssp             CCBTTBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTTTC
T ss_pred             CCcCCCCCeEcCCC-CeEChhhhCcCcCcCCCCCCCCcCcC
Confidence            56789999999998 99999999999999999999985444

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.4e-12  Score=82.74  Aligned_cols=37  Identities=38%  Similarity=1.028  Sum_probs=34.3

Q ss_pred             CcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       524 ~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      +|.+++|+|.++ +||+.+|+|||..||.|||||.  +|+
T Consensus         1 PC~~~~f~C~~g-~Ci~~~~~CDg~~DC~dgsDE~--~Cs   37 (37)
T d1ajja_           1 PCSAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEE--NCA   37 (37)
T ss_dssp             CCCTTCEECTTS-CEECGGGTTSSSCCSTTCGGGT--TCC
T ss_pred             CCCCCceEcCCC-CEECchhcCCCCCcCCCCchhh--ccC
Confidence            378899999998 9999999999999999999998  774

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=2.6e-12  Score=84.07  Aligned_cols=40  Identities=38%  Similarity=0.910  Sum_probs=35.9

Q ss_pred             CCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCCC
Q psy952          523 ITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ  564 (573)
Q Consensus       523 ~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~  564 (573)
                      ..|.+++|+|.++.+||+.+|+|||..||.|+|||.  +|..
T Consensus         2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~--~C~~   41 (42)
T d1cr8a_           2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK--SCEG   41 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTT--TCCC
T ss_pred             CCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhc--cCCC
Confidence            568899999976559999999999999999999998  8864

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.9e-12  Score=82.20  Aligned_cols=38  Identities=39%  Similarity=1.057  Sum_probs=33.5

Q ss_pred             CCcCCCceeeCCC-CceecCCcCcCCCCCCCCCCCCCCCCC
Q psy952          523 ITCPPHHLKCANT-NICVEPYWLCDGDNDCGDMSDEDPLHC  562 (573)
Q Consensus       523 ~~C~~~~f~C~~~-~~Ci~~~~~Cdg~~dC~d~sDe~~~~c  562 (573)
                      ..|.+++|+|.++ .+|||.+|+|||..||.|||||.  +|
T Consensus         3 ~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~--~C   41 (41)
T d1f5ya2           3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ--GC   41 (41)
T ss_dssp             TTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTT--TC
T ss_pred             cccCCCceECCCCCCCCccchhcCCCcCcCcCccccc--CC
Confidence            4688999999643 38999999999999999999998  76

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.7e-12  Score=82.57  Aligned_cols=38  Identities=37%  Similarity=1.016  Sum_probs=34.0

Q ss_pred             cCCCceeeCCC-CceecCCcCcCCCCCCCCCCCCCCCCCCC
Q psy952          525 CPPHHLKCANT-NICVEPYWLCDGDNDCGDMSDEDPLHCQQ  564 (573)
Q Consensus       525 C~~~~f~C~~~-~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~~  564 (573)
                      |.+++|+|.++ .+|||.+|+|||..||.|||||.  +|+.
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~--~C~~   39 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEE--NCGN   39 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGS--SCCC
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCCCCchhc--cCCC
Confidence            67899999875 37999999999999999999999  8863

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.4e-12  Score=82.49  Aligned_cols=39  Identities=33%  Similarity=0.726  Sum_probs=34.4

Q ss_pred             CcC-CCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          524 TCP-PHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       524 ~C~-~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      .|. +++|+|.+| +|||..|+|||..||.|+|||.+..|+
T Consensus         5 ~C~~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~~~CG   44 (44)
T d1xfea2           5 LCEGPNKFKCHSG-ECITLDKVCNMARDCRDWSDEPIKECG   44 (44)
T ss_dssp             SCCSTTEEECTTS-CEEESTTTTCSSCCCSSCSSSCTTTSS
T ss_pred             cCCCCCeEECCCC-CeEchhhcCCCCCCCCCCCccCcccCC
Confidence            454 689999999 999999999999999999999866663

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8e-12  Score=82.83  Aligned_cols=36  Identities=33%  Similarity=0.887  Sum_probs=33.8

Q ss_pred             CCCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCC
Q psy952          522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED  558 (573)
Q Consensus       522 ~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~  558 (573)
                      ...|.+++|+|.++ +|||.+|+|||..||.|||||.
T Consensus         5 ~~~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~   40 (44)
T d1f5ya1           5 GDRCERNEFQCQDG-KCISYKWVCDGSAECQDGSDES   40 (44)
T ss_dssp             CCCCCSSSEECSSS-CEECTTTTTSSSCSSSSSGGGT
T ss_pred             CCccCCCCeEcCCC-CeEChhHcCCCcCcCCCCCcCC
Confidence            45688999999998 9999999999999999999998

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.14  E-value=3.5e-12  Score=83.29  Aligned_cols=38  Identities=39%  Similarity=0.887  Sum_probs=32.7

Q ss_pred             CcCCCceeeCCC-CceecCCcCcCCCCCCCCCCCCCCCC
Q psy952          524 TCPPHHLKCANT-NICVEPYWLCDGDNDCGDMSDEDPLH  561 (573)
Q Consensus       524 ~C~~~~f~C~~~-~~Ci~~~~~Cdg~~dC~d~sDe~~~~  561 (573)
                      .|.+++|+|.++ .+|||.+|+|||+.||+|||||.+..
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~~~   40 (42)
T d2gtlm2           2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET   40 (42)
T ss_dssp             CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHH
T ss_pred             CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCCccc
Confidence            478999999752 38999999999999999999997433

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.12  E-value=1.2e-11  Score=80.32  Aligned_cols=39  Identities=33%  Similarity=0.902  Sum_probs=33.0

Q ss_pred             CcCCCceeeCC-CCceecCCcCcCCCCCCCCCCCCCCCCC
Q psy952          524 TCPPHHLKCAN-TNICVEPYWLCDGDNDCGDMSDEDPLHC  562 (573)
Q Consensus       524 ~C~~~~f~C~~-~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c  562 (573)
                      .|.+++|+|.+ ..+|||.+|+|||..||.|||||.+..|
T Consensus         1 ~C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~~~C   40 (41)
T d2gtln2           1 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC   40 (41)
T ss_dssp             SSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGG
T ss_pred             CCCCCeeECCCcCCCeechHHcCCCCccCCCCCccccccC
Confidence            37899999974 2399999999999999999999985434

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=2.3e-08  Score=97.24  Aligned_cols=228  Identities=10%  Similarity=0.077  Sum_probs=153.1

Q ss_pred             EEEEEe--cccEEEEEcCCC-ceeec--ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc--eEEEc-CCCCC
Q psy952           18 WLIFSN--KYYVRNMSLDAT-QYSLV--HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK--ERVIR-HDSHG   89 (573)
Q Consensus        18 ~l~~s~--~~~I~~i~l~g~-~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~i~~-~~~~~   89 (573)
                      -++++.  .+.|+.++++.. .++++  ......+.+|+|.+.+++||++....+.|..++++....  +.+.. .....
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~   84 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS   84 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCC
Confidence            345555  467888888643 23322  344567899999999999999999889998888765432  22221 22357


Q ss_pred             cceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec---cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           90 LEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK---TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        90 p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~---~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      |.+|++++.++.||+++...+.|.+...+........   .....|.+++++|...++|+++.. ...|...........
T Consensus        85 p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~-~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          85 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK-QDRICLFTVSDDGHL  163 (333)
T ss_dssp             CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG-GTEEEEEEECTTSCE
T ss_pred             ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc-cceeeEEEeccCCcc
Confidence            9999999999999999988888888877765544433   455679999999999999999864 455666555443322


Q ss_pred             EEEe----cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc--EE---EEEeC----CccceeEEEee--eCCe
Q psy952          167 RILT----HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH--KH---IVISG----QKVPHVFALTL--FEDH  231 (573)
Q Consensus       167 ~l~~----~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~--~~---~l~~~----~~~~~p~~ia~--~~~~  231 (573)
                      ....    .......|..|++++....+|++....+.+.....+...  ..   .+...    .....|.++++  ++.+
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  243 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  243 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCc
Confidence            2110    133456788999999999999998888776666654322  11   11111    01345666666  4567


Q ss_pred             EEEecCCCCceEEEe
Q psy952          232 IYWTDWNTKSINRAD  246 (573)
Q Consensus       232 lywtd~~~~~I~~~~  246 (573)
                      +|.+....+.+....
T Consensus       244 ~~~~~~~~~~~~~~~  258 (333)
T d1ri6a_         244 LYACDRTASLITVFS  258 (333)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             eeeecccCCeEEEEE
Confidence            888887777655443

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=99.11  E-value=1.1e-11  Score=81.22  Aligned_cols=38  Identities=42%  Similarity=1.059  Sum_probs=32.8

Q ss_pred             CcCCCceeeCCC----CceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          524 TCPPHHLKCANT----NICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       524 ~C~~~~f~C~~~----~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      +|.+++|+|.+.    .+|||.+|+|||..||+|||||.  +|+
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~--~CG   42 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEW--GCG   42 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTG--GGC
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhh--ccC
Confidence            367889999653    27999999999999999999998  774

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2.7e-08  Score=96.63  Aligned_cols=251  Identities=11%  Similarity=0.084  Sum_probs=162.2

Q ss_pred             CEEEEEe--cccEEEEEcCCC--ceeec--ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE--EcCCCC
Q psy952           17 PWLIFSN--KYYVRNMSLDAT--QYSLV--HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV--IRHDSH   88 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~--~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i--~~~~~~   88 (573)
                      .+|+++.  .+.|+.++++..  ..+..  ......|.+|++++.++.||+++...+.|..+..+.......  ......
T Consensus        49 ~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  128 (333)
T d1ri6a_          49 RYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD  128 (333)
T ss_dssp             SEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT
T ss_pred             CEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCc
Confidence            4676666  356777776543  22222  233456889999999999999999888888777665433222  223446


Q ss_pred             CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEe-------ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEe--
Q psy952           89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-------KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIG--  159 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l-------~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~--  159 (573)
                      .|.++++++.++.+|+++.....|.+.++........       ......|+.|++++...++|++... ...+....  
T Consensus       129 ~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~-~~~~~v~~~~  207 (333)
T d1ri6a_         129 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-NSSVDVWELK  207 (333)
T ss_dssp             TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-TTEEEEEESS
T ss_pred             cceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc-cCceEEEeec
Confidence            7899999999999999998888898888754332221       1244569999999999999998754 33333333  


Q ss_pred             ccCCCcEEEEe------cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC--CCCcEEEEEeCCccceeEEEee--eC
Q psy952          160 MDGSNFTRILT------HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL--DGKHKHIVISGQKVPHVFALTL--FE  229 (573)
Q Consensus       160 ldG~~~~~l~~------~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~--dG~~~~~l~~~~~~~~p~~ia~--~~  229 (573)
                      ...........      .......|.++++.+.+.++|.+....+.+..+.+  ++...+.+........|.+|++  ++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDG  287 (333)
T d1ri6a_         208 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSG  287 (333)
T ss_dssp             CTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTS
T ss_pred             ccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCC
Confidence            33322222111      01234567789999999999999888876665544  4444444332111346888887  46


Q ss_pred             CeEEEecCCCCc--eEEEeccCCcceEE--EcccCCCceeeeee
Q psy952          230 DHIYWTDWNTKS--INRADKFNGRDYRV--LRNTTHRPYDIHVY  269 (573)
Q Consensus       230 ~~lywtd~~~~~--I~~~~~~~g~~~~~--l~~~~~~p~~i~v~  269 (573)
                      .+||++....+.  |++++..+|+...+  +..+ ..|.-|.|.
T Consensus       288 k~l~va~~~~~~v~v~~id~~tG~l~~~~~~~~g-~~p~~v~~~  330 (333)
T d1ri6a_         288 KYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVN  330 (333)
T ss_dssp             SEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEE
T ss_pred             CEEEEEECCCCeEEEEEEECCCCcEEEEEeccCC-CCCcEEEEE
Confidence            679999877775  45567777764433  3332 357776653

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.10  E-value=4.7e-09  Score=105.25  Aligned_cols=216  Identities=11%  Similarity=0.047  Sum_probs=138.3

Q ss_pred             cccEEEEEcCCCc--eeec----ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEee
Q psy952           24 KYYVRNMSLDATQ--YSLV----HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDW   97 (573)
Q Consensus        24 ~~~I~~i~l~g~~--~~~~----~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~   97 (573)
                      ...|+.+.++...  ++++    +.....+..|++++.++.||.++...-..+.++.+++.........-..|..+++++
T Consensus        13 ~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~   92 (365)
T d1jofa_          13 PGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT   92 (365)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC
Confidence            3468777776443  3322    334445678999999999999987654555555555443332222235799999999


Q ss_pred             cCCcEEEEeC--CCCeEEEEEcC--CCceeE------------e----ccCCCCcceEEEeCCCceEEEEecCCcCeEEE
Q psy952           98 VGRKLYWLDR--HSKQLDVAELD--GTNRKT------------L----KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGK  157 (573)
Q Consensus        98 ~~~~LY~td~--~~~~I~~~~ld--g~~~~~------------l----~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r  157 (573)
                      .++.+|++..  ..+.|.+..+.  +....+            .    .+...+|.+++++|..++||+++.+ ..+|.+
T Consensus        93 ~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-~d~v~~  171 (365)
T d1jofa_          93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-ANKLWT  171 (365)
T ss_dssp             CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-TTEEEE
T ss_pred             CCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-CCEEEE
Confidence            8888888653  44566554432  211111            1    1233458999999999999999976 456777


Q ss_pred             EeccCCCcEEEEe---cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe-C-----------------
Q psy952          158 IGMDGSNFTRILT---HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS-G-----------------  216 (573)
Q Consensus       158 ~~ldG~~~~~l~~---~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~-~-----------------  216 (573)
                      ...+.......+.   ....-..|.++++++.+.+||++....+.|..++++......+.. .                 
T Consensus       172 ~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (365)
T d1jofa_         172 HRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETG  251 (365)
T ss_dssp             EEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTS
T ss_pred             EEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccc
Confidence            7665443333221   123346799999999999999999999999999987654322111 0                 


Q ss_pred             CccceeEEEee--eCCeEEEecCCCC
Q psy952          217 QKVPHVFALTL--FEDHIYWTDWNTK  240 (573)
Q Consensus       217 ~~~~~p~~ia~--~~~~lywtd~~~~  240 (573)
                      .....+..|++  .+.+||++.+..+
T Consensus       252 ~~~~~~~~i~~spdG~~lyvsnr~~~  277 (365)
T d1jofa_         252 KGLYRADVCALTFSGKYMFASSRANK  277 (365)
T ss_dssp             SBSEEEEEEEECTTSSEEEEEEEESS
T ss_pred             cccCCccceEECCCCCEEEEEcccCC
Confidence            00124667776  4678999976544

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.09  E-value=7.1e-12  Score=81.54  Aligned_cols=38  Identities=34%  Similarity=0.954  Sum_probs=33.3

Q ss_pred             CcCCCceeeCC-CCceecCCcCcCCCCCCCCCCCCCCCCCC
Q psy952          524 TCPPHHLKCAN-TNICVEPYWLCDGDNDCGDMSDEDPLHCQ  563 (573)
Q Consensus       524 ~C~~~~f~C~~-~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c~  563 (573)
                      .|.+++|+|.. ..+|||.+|+|||..||.|+|||.  +|.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~--~C~   40 (41)
T d2gtlo2           2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEK--DCT   40 (41)
T ss_dssp             SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHH--CCC
T ss_pred             CCCcCeeECCCCCCcEeechhccCCCCcCCCCchhc--cCc
Confidence            47899999963 238999999999999999999998  885

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.2e-11  Score=81.91  Aligned_cols=35  Identities=49%  Similarity=1.139  Sum_probs=33.2

Q ss_pred             CCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCC
Q psy952          523 ITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED  558 (573)
Q Consensus       523 ~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~  558 (573)
                      ..|.+++|+|.++ +|||.+|+|||+.||.|+|||.
T Consensus         3 ~~C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~   37 (44)
T d1j8ea_           3 HSCSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDET   37 (44)
T ss_dssp             SSSCTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGS
T ss_pred             ccCCCCcEEcCCC-CEEChhhcCcCcccCCCCCcCC
Confidence            4688999999998 9999999999999999999998

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.03  E-value=7.5e-09  Score=103.75  Aligned_cols=172  Identities=17%  Similarity=0.123  Sum_probs=121.7

Q ss_pred             CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce----EEEc-CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC
Q psy952           44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE----RVIR-HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD  118 (573)
Q Consensus        44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~----~i~~-~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld  118 (573)
                      ...+.+++|++.+++||++|....+|++++.+.....    .+.. ..-..|++|++++.++.+|++....++|.+++++
T Consensus       144 ~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEec
Confidence            3457899999999999999999999988886543221    1121 1236899999999999999999999999999987


Q ss_pred             CCceeEec--------c------------CCCCcceEEEeCCCceEEEEecCCc----CeEEEEe--ccCCCcEE--EEe
Q psy952          119 GTNRKTLK--------T------------AIQDPRGITLHPGIGYVYFSSWNLQ----AYIGKIG--MDGSNFTR--ILT  170 (573)
Q Consensus       119 g~~~~~l~--------~------------~~~~P~~Iavdp~~g~LYwtd~~~~----~~I~r~~--ldG~~~~~--l~~  170 (573)
                      ......+.        .            ....|..|+|+|..++||+++.+..    ..|....  .+|...+.  +..
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            65332111        0            1123778999999999999986432    2344443  44443222  221


Q ss_pred             cCCCCCCCceEEEec-cCCeEEEEeCCCCeEEEEeCCCCcEEEEEe
Q psy952          171 HEDDIAWPNALTLDY-FTERLYWADAHLDYIASVDLDGKHKHIVIS  215 (573)
Q Consensus       171 ~~~~l~~P~glaiD~-~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~  215 (573)
                      ......+|++|++++ .+++||+++...+.|..++.++.....+..
T Consensus       304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~~~~~  349 (365)
T d1jofa_         304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLHRVAR  349 (365)
T ss_dssp             CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEEEEEE
T ss_pred             EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCcEEEE
Confidence            233567899999997 567899999999999888887766555544

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.8e-10  Score=76.35  Aligned_cols=39  Identities=51%  Similarity=1.090  Sum_probs=34.4

Q ss_pred             CCCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCCCcc
Q psy952          408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMC  447 (573)
Q Consensus       408 ~~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~~~C  447 (573)
                      ..|..+ +|+|.+|+||+..|+||+.+||.|+|||....|
T Consensus         4 ~~C~~~-~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~~C   42 (45)
T d1d2la_           4 PQCQPG-EFACANSRCIQERWKCDGDNDCLDNSDEAPALC   42 (45)
T ss_dssp             CBTTBT-CEEETTTEEECGGGTTTSSCTTTTCSTTSTTTC
T ss_pred             CcCCCC-CeEcCCCCeEChhhhCcCcCcCCCCCCCCcCcC
Confidence            457777 999999999999999999999999999976433

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.4e-10  Score=75.58  Aligned_cols=37  Identities=43%  Similarity=1.083  Sum_probs=33.8

Q ss_pred             CCCCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          407 NRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       407 ~~~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      ...|.++ +|+|.+|+|||..|+||+..||.|+|||.+
T Consensus         5 ~~~C~~~-~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   41 (44)
T d1f5ya1           5 GDRCERN-EFQCQDGKCISYKWVCDGSAECQDGSDESQ   41 (44)
T ss_dssp             CCCCCSS-SEECSSSCEECTTTTTSSSCSSSSSGGGTT
T ss_pred             CCccCCC-CeEcCCCCeEChhHcCCCcCcCCCCCcCCC
Confidence            3467777 999999999999999999999999999976

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=7.9e-11  Score=75.41  Aligned_cols=35  Identities=49%  Similarity=1.107  Sum_probs=32.4

Q ss_pred             CCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       409 ~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      +|+++ +|+|.+|.|||..|+||+..||.|+|||..
T Consensus         2 tC~~~-~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           2 TCGPA-SFQCNSSTCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             HCCTT-EEECTTSCEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             ccCCC-ceEcCCCCeEChhhcCCCCCCCCCCCcCCC
Confidence            46677 999999999999999999999999999975

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.6e-10  Score=74.10  Aligned_cols=35  Identities=49%  Similarity=1.101  Sum_probs=32.7

Q ss_pred             CCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       409 ~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      +|.++ +|+|.+|+||+..|+||+..||.|+|||..
T Consensus         2 tC~~~-~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb1           2 TCSQA-EFRCHDGKCISRQFVCDSDRDCLDGSDEAS   36 (39)
T ss_dssp             CCCTT-EEECTTSCEEEGGGTTSSSCCSTTCTTTTT
T ss_pred             cCCCC-CEEcCCCCEEcchhcCcCcCcCcCCchhcC
Confidence            57777 999999999999999999999999999975

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.9e-10  Score=73.49  Aligned_cols=35  Identities=46%  Similarity=0.909  Sum_probs=32.6

Q ss_pred             CCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       409 ~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      +|.++ +|+|.+|+|||..|+||+..||.|+|||..
T Consensus         2 sC~~~-~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d1f8za_           2 TCRPD-EFQCSDGNCIHGSRQCDREYDCKDMSDEVG   36 (39)
T ss_dssp             CCCTT-EEECSSSCEEETTTSSSCCCCSTTSGGGSS
T ss_pred             CCCCC-ceEeCCCCeEChhhcCCCCCcCCCCchhcc
Confidence            47777 999999999999999999999999999975

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.5e-10  Score=72.15  Aligned_cols=34  Identities=47%  Similarity=0.969  Sum_probs=31.8

Q ss_pred             CCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          410 CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       410 C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      |.++ +|+|.+|+||+..|+|||..||.|+|||..
T Consensus         2 C~~~-~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~   35 (37)
T d1ajja_           2 CSAF-EFHCLSGECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCTT-CEECTTSCEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCC-ceEcCCCCEECchhcCCCCCcCCCCchhhc
Confidence            6677 999999999999999999999999999975

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1e-10  Score=77.37  Aligned_cols=39  Identities=51%  Similarity=1.187  Sum_probs=34.7

Q ss_pred             CCCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCCCcc
Q psy952          408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMC  447 (573)
Q Consensus       408 ~~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~~~C  447 (573)
                      +.|.++ +|+|.+|.|||..|+||++.||.|+|||....|
T Consensus         3 ~~C~~~-~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c~C   41 (44)
T d1j8ea_           3 HSCSST-QFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC   41 (44)
T ss_dssp             SSSCTT-EEECTTSCEEEGGGTTSSSCCSSSSGGGSHHHH
T ss_pred             ccCCCC-cEEcCCCCEEChhhcCcCcccCCCCCcCCCCCC
Confidence            467788 999999999999999999999999999987333

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.7e-10  Score=72.27  Aligned_cols=36  Identities=39%  Similarity=1.002  Sum_probs=32.0

Q ss_pred             CCCCCCCceecC--CCcccCCCcccCCCCCCCCCCCCCC
Q psy952          408 RPCDKDTEFACR--NGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       408 ~~C~~~~~f~C~--~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      .+|.++ +|+|.  +++|||..|+|||..||.|+|||.+
T Consensus         3 ~~C~~~-~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   40 (41)
T d1f5ya2           3 VTCKSG-DFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG   40 (41)
T ss_dssp             TTCCSS-CEECCSSCCCEECGGGTTCSCCCSSSCTTTTT
T ss_pred             cccCCC-ceECCCCCCCCccchhcCCCcCcCcCcccccC
Confidence            467777 99996  5689999999999999999999975

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=7.8e-10  Score=72.64  Aligned_cols=35  Identities=43%  Similarity=0.933  Sum_probs=31.4

Q ss_pred             CCC-CCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952          409 PCD-KDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       409 ~C~-~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      .|. ++ +|+|.+|+|||..|+||+..||.|+|||..
T Consensus         5 ~C~~~~-~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2           5 LCEGPN-KFKCHSGECITLDKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             SCCSTT-EEECTTSCEEESTTTTCSSCCCSSCSSSCT
T ss_pred             cCCCCC-eEECCCCCeEchhhcCCCCCCCCCCCccCc
Confidence            354 45 999999999999999999999999999975

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.81  E-value=1.5e-06  Score=83.56  Aligned_cols=233  Identities=8%  Similarity=-0.006  Sum_probs=143.5

Q ss_pred             CEEEEEe-cccEEEEEcCCCceee--ccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-----C
Q psy952           17 PWLIFSN-KYYVRNMSLDATQYSL--VHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-----S   87 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~~~--~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-----~   87 (573)
                      .||+.+. .+.|+.+++.......  .+. ....|.+|+|.+.++.||++....+.|+.+++........+...     .
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            3555554 4799999998765432  222 23558899999988999999988899999999765432222111     2


Q ss_pred             CCcceeEEeecCCcEEEEeC-----------CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC------
Q psy952           88 HGLEGLAVDWVGRKLYWLDR-----------HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN------  150 (573)
Q Consensus        88 ~~p~glavD~~~~~LY~td~-----------~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~------  150 (573)
                      ..+.++++.+.++.||++..           ....+.+.++........+.....|.+++++|...+||++...      
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~  161 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP  161 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEET
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeee
Confidence            46789999999999999864           2346667777655544444555679999999998899987521      


Q ss_pred             -CcCeEEEEec-----------cCCC--------------------------------------------cEEEEecCCC
Q psy952          151 -LQAYIGKIGM-----------DGSN--------------------------------------------FTRILTHEDD  174 (573)
Q Consensus       151 -~~~~I~r~~l-----------dG~~--------------------------------------------~~~l~~~~~~  174 (573)
                       ....+.....           ++..                                            .....  ...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  239 (337)
T d1pbyb_         162 EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREV--RIM  239 (337)
T ss_dssp             TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEE--EEC
T ss_pred             ecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEe--cCC
Confidence             0001111111           0000                                            00000  011


Q ss_pred             CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcc
Q psy952          175 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRD  252 (573)
Q Consensus       175 l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~  252 (573)
                      -..+..+++.+....+|.++   +.|...++........+..  -..|.+|++  ++.+||++.. .+.|...+..+++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~---~~i~v~d~~~~~~~~~~~~--~~~~~~~~~s~dG~~l~v~~~-~~~i~v~D~~t~~~  313 (337)
T d1pbyb_         240 DVFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGA-LGDLAAYDAETLEK  313 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEEE---SEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESB-SSEEEEEETTTCCE
T ss_pred             CcceEEEEecccceEEEEcc---ccEEEEECCCCcEEEEEcC--CCCEEEEEECCCCCEEEEEeC-CCcEEEEECCCCcE
Confidence            12233455555555666554   5677777765443322222  235778887  4667888764 46788889888887


Q ss_pred             eEEEc
Q psy952          253 YRVLR  257 (573)
Q Consensus       253 ~~~l~  257 (573)
                      +..|.
T Consensus       314 v~~i~  318 (337)
T d1pbyb_         314 KGQVD  318 (337)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76664

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.1e-09  Score=70.00  Aligned_cols=36  Identities=56%  Similarity=1.144  Sum_probs=32.2

Q ss_pred             CCCCCCCceecC-CCcccCCCcccCCCCCCCCCCCCCC
Q psy952          408 RPCDKDTEFACR-NGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       408 ~~C~~~~~f~C~-~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      .+|.++ +|+|. +++||+..|+||+..||.|+|||.+
T Consensus         2 ~~C~~~-~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d1cr8a_           2 GGCHTD-EFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS   38 (42)
T ss_dssp             CCSSTT-CEECTTTCCEECGGGSSSSSCCSSSSTTTTT
T ss_pred             CCCCCC-ceEcCCCCEEccchhcCCCcCcCCCcchhcc
Confidence            357777 99996 6799999999999999999999976

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.77  E-value=2.3e-06  Score=84.02  Aligned_cols=216  Identities=11%  Similarity=0.074  Sum_probs=132.8

Q ss_pred             ccEEEEEcCCCcee---eccc-C-----CcceEEEEEEcC-CC--EEEEEEC--CCCeEEEEEc--CCCcc---eEEEcC
Q psy952           25 YYVRNMSLDATQYS---LVHQ-D-----LLNVVAMDFHYK-EN--RFYFADV--AAKTIYRSRV--GSTEK---ERVIRH   85 (573)
Q Consensus        25 ~~I~~i~l~g~~~~---~~~~-~-----~~~~~~v~~d~~-~~--~ly~~d~--~~~~I~~~~~--~g~~~---~~i~~~   85 (573)
                      ..|+.+++......   +... +     .-.|.||++-.. ++  +||+++.  ...+|....+  ++...   ..+...
T Consensus        68 G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~  147 (340)
T d1v04a_          68 GKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK  147 (340)
T ss_dssp             CEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT
T ss_pred             CeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCc
Confidence            57888887654321   1111 1     135899987432 22  6888875  3455655554  33221   222334


Q ss_pred             CCCCcceeEEeecCCcEEEEeCC---------------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC
Q psy952           86 DSHGLEGLAVDWVGRKLYWLDRH---------------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN  150 (573)
Q Consensus        86 ~~~~p~glavD~~~~~LY~td~~---------------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~  150 (573)
                      .+..|+.|++.. .+.+|+|+..               .....+...++...+++++++..|+|||++|.+.+||+++..
T Consensus       148 ~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         148 LLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             TCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             cccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCC
Confidence            468899999985 6689999732               134566667777778888899999999999999999999965


Q ss_pred             CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC--------------CeEEEEeC---CCCcEEEE
Q psy952          151 LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL--------------DYIASVDL---DGKHKHIV  213 (573)
Q Consensus       151 ~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~--------------~~I~~~~~---dG~~~~~l  213 (573)
                       ..+|.+..+++...........--..|..|.+|..++.||++-...              ..+.++..   .+...+.+
T Consensus       227 -~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p~~~~~~~~~~~~~~~s~v~ri~~~~~~~~~v~~~  305 (340)
T d1v04a_         227 -AHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILSEEPKVTVV  305 (340)
T ss_dssp             -GTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTTSCCCEEEEEEECTTSSSCEEEEE
T ss_pred             -CCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECCcccchhhhcccCCCCceeEEEEeccCCCCeEEEE
Confidence             6789988888765433321012234588999998888888873210              12444431   22233333


Q ss_pred             Ee--CCccceeEEEeeeCCeEEEecCCCCce
Q psy952          214 IS--GQKVPHVFALTLFEDHIYWTDWNTKSI  242 (573)
Q Consensus       214 ~~--~~~~~~p~~ia~~~~~lywtd~~~~~I  242 (573)
                      ..  +..+..+.....++++||+.......|
T Consensus       306 ~~~~G~~~~~~T~a~~~~g~L~iGs~~~~~l  336 (340)
T d1v04a_         306 YAENGTVLQGSTVAAVYKGKLLIGTVFHKAL  336 (340)
T ss_dssp             EEECSSSSCSEEEEEEETTEEEEEESSSCEE
T ss_pred             EeCCCcEeeceEEEEEECCEEEEEeeeCCce
Confidence            32  222344444445788888876655444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.77  E-value=4e-07  Score=93.29  Aligned_cols=160  Identities=14%  Similarity=0.179  Sum_probs=109.6

Q ss_pred             CCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC--------CCCCcceeEEee---cCCcE
Q psy952           34 ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH--------DSHGLEGLAVDW---VGRKL  102 (573)
Q Consensus        34 g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~--------~~~~p~glavD~---~~~~L  102 (573)
                      +-..++++.++..|.+|+|.+ +++||+++...++|++++.++...+.+...        +....-|||+|+   .++.|
T Consensus        16 ~f~~~~ia~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~i   94 (450)
T d1crua_          16 NFDKKVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI   94 (450)
T ss_dssp             TSCEEEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred             CcEEEEEECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEE
Confidence            345567788899999999986 679999998889999999877655544321        123445799986   46788


Q ss_pred             EEEeC---------C---CCeEEEEEcCCCc-----eeEecc-----CCCCcceEEEeCCCceEEEEecCC---------
Q psy952          103 YWLDR---------H---SKQLDVAELDGTN-----RKTLKT-----AIQDPRGITLHPGIGYVYFSSWNL---------  151 (573)
Q Consensus       103 Y~td~---------~---~~~I~~~~ldg~~-----~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~~---------  151 (573)
                      |++-.         .   ...|.+...+...     .++++.     ....-..|+++| .|+||++-...         
T Consensus        95 Yvsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~  173 (450)
T d1crua_          95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLF  173 (450)
T ss_dssp             EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTT
T ss_pred             EEEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCcccccccc
Confidence            88632         1   1124444444322     222332     223367899999 68999985310         


Q ss_pred             ----------------------cCeEEEEeccCCCc----------EEEEecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952          152 ----------------------QAYIGKIGMDGSNF----------TRILTHEDDIAWPNALTLDYFTERLYWADAHLD  198 (573)
Q Consensus       152 ----------------------~~~I~r~~ldG~~~----------~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~  198 (573)
                                            .++|.|++.||+..          ..|.  ..++..|.+|++|+ +++||++|.+..
T Consensus       174 ~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~--a~G~RNp~g~~~~p-~g~l~~~e~G~~  249 (450)
T d1crua_         174 LPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIY--TLGHRNPQGLAFTP-NGKLLQSEQGPN  249 (450)
T ss_dssp             SCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEE--EBCCSEEEEEEECT-TSCEEEEEECSS
T ss_pred             cccccccCcccccccccccccccCceEEeeccccccccccccccccceEE--Eeccccccceeecc-cceeeecccccc
Confidence                                  26899999998753          1234  47899999999997 789999987643

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.77  E-value=7.6e-10  Score=72.00  Aligned_cols=35  Identities=46%  Similarity=0.912  Sum_probs=31.0

Q ss_pred             CCCCCCceecCC--CcccCCCcccCCCCCCCCCCCCCC
Q psy952          409 PCDKDTEFACRN--GHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       409 ~C~~~~~f~C~~--g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      .|.++ +|+|.+  ++|||..|+|||+.||.|+|||..
T Consensus         2 ~C~~~-~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d2gtlm2           2 HCDEH-ESECRGDVPECIHDLLFCDGEKDCRDGSDEDP   38 (42)
T ss_dssp             CCCTT-EEECSSSSCCEEEGGGTTSSSCCSSSSTTTSH
T ss_pred             CCCCC-eeECCCCCCCEechhhcCCCCccCCCCCcCCc
Confidence            36677 999974  689999999999999999999964

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.2e-09  Score=68.73  Aligned_cols=34  Identities=41%  Similarity=0.968  Sum_probs=30.3

Q ss_pred             CCCCCceecCCC--cccCCCcccCCCCCCCCCCCCCC
Q psy952          410 CDKDTEFACRNG--HCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       410 C~~~~~f~C~~g--~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      |.++ +|+|.+|  +|||..|+|||..||.|+|||.+
T Consensus         1 C~~~-~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d1v9u5_           1 CRIH-EISCGAHSTQCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             CCTT-SCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSS
T ss_pred             CCCC-ceECCCCCCCeeechhcCcCcccCCCCchhcc
Confidence            4566 9999875  69999999999999999999976

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.73  E-value=2.6e-09  Score=69.04  Aligned_cols=34  Identities=41%  Similarity=0.924  Sum_probs=30.6

Q ss_pred             CCCCCceecC--CCcccCCCcccCCCCCCCCCCCCCC
Q psy952          410 CDKDTEFACR--NGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       410 C~~~~~f~C~--~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      |.++ +|+|.  +|.|||.+|+||+..||.|+|||..
T Consensus         2 C~~~-~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           2 CEKR-TFQCGGNEQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             SCTT-EEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCC-eeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence            5677 99996  4799999999999999999999975

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.71  E-value=9e-10  Score=71.40  Aligned_cols=35  Identities=46%  Similarity=0.992  Sum_probs=31.6

Q ss_pred             CCCCCCceecC--CCcccCCCcccCCCCCCCCCCCCCC
Q psy952          409 PCDKDTEFACR--NGHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       409 ~C~~~~~f~C~--~g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      +|.++ +|+|.  +|+|||..|+|||..||.|+|||.+
T Consensus         2 ~C~~~-~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~   38 (41)
T d2gtlo2           2 SCDEH-EHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD   38 (41)
T ss_dssp             SSCTT-EEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC
T ss_pred             CCCcC-eeECCCCCCcEeechhccCCCCcCCCCchhcc
Confidence            47777 99996  5799999999999999999999975

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.71  E-value=7.3e-07  Score=87.67  Aligned_cols=165  Identities=10%  Similarity=0.066  Sum_probs=107.2

Q ss_pred             CeEEEEEcCCCcceE--E-EcCC-----CCCcceeEEeec-CC--cEEEEeC--CCCeEEEEEcCCCcee-E----ec-c
Q psy952           67 KTIYRSRVGSTEKER--V-IRHD-----SHGLEGLAVDWV-GR--KLYWLDR--HSKQLDVAELDGTNRK-T----LK-T  127 (573)
Q Consensus        67 ~~I~~~~~~g~~~~~--i-~~~~-----~~~p~glavD~~-~~--~LY~td~--~~~~I~~~~ldg~~~~-~----l~-~  127 (573)
                      +.|+.++++....+.  + +..+     .-.|.||++-.. .+  .||+.+.  ...+|+++.++....+ +    +. .
T Consensus        68 G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~  147 (340)
T d1v04a_          68 GKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK  147 (340)
T ss_dssp             CEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT
T ss_pred             CeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCc
Confidence            667777765533221  1 1111     147999988432 12  6888885  4568888887533221 1    22 3


Q ss_pred             CCCCcceEEEeCCCceEEEEecCC--------------cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952          128 AIQDPRGITLHPGIGYVYFSSWNL--------------QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       128 ~~~~P~~Iavdp~~g~LYwtd~~~--------------~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~  193 (573)
                      .+..|++|++.. .+.+|+|+...              .+...+...++...++++   +.+..||||+++++++.||++
T Consensus       148 ~~~~pNDv~~~~-~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~---~~l~~pNGI~~s~d~~~lyVa  223 (340)
T d1v04a_         148 LLPSVNDIVAVG-PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA---EGFDFANGINISPDGKYVYIA  223 (340)
T ss_dssp             TCSSEEEEEEEE-TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEE---EEESSEEEEEECTTSSEEEEE
T ss_pred             cccCccceEEec-CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEc---CCCCccceeEECCCCCEEEEE
Confidence            566799999998 67899996321              123455556777766665   678999999999999999999


Q ss_pred             eCCCCeEEEEeCCCCcEEEEEe-CCccceeEEEeeeC--CeEEEe
Q psy952          194 DAHLDYIASVDLDGKHKHIVIS-GQKVPHVFALTLFE--DHIYWT  235 (573)
Q Consensus       194 D~~~~~I~~~~~dG~~~~~l~~-~~~~~~p~~ia~~~--~~lywt  235 (573)
                      +...++|.++++++........ ......|..|.++.  +.+|++
T Consensus       224 ~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         224 ELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             eCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            9999999999988654322211 11135799999963  445554

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.65  E-value=2.8e-06  Score=85.62  Aligned_cols=194  Identities=11%  Similarity=0.086  Sum_probs=121.0

Q ss_pred             EcCCCEEEEEECCCCeEEEEEcCCCcceEEEc-CCCCCcceeEEeecCCcEEEEeCCCCeE------------------E
Q psy952           53 HYKENRFYFADVAAKTIYRSRVGSTEKERVIR-HDSHGLEGLAVDWVGRKLYWLDRHSKQL------------------D  113 (573)
Q Consensus        53 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-~~~~~p~glavD~~~~~LY~td~~~~~I------------------~  113 (573)
                      .+.+++||++|..+++|.+++++......++. .....|.|+++.+.++.+|++......+                  .
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~  159 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT  159 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEE
Confidence            44588999999999999999998765554543 2347999999999899999987554443                  2


Q ss_pred             EEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcC-------------eEEEEe---------------ccCCCc
Q psy952          114 VAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQA-------------YIGKIG---------------MDGSNF  165 (573)
Q Consensus       114 ~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~-------------~I~r~~---------------ldG~~~  165 (573)
                      +++........-+....+|.+++++|..+++|++......             .|...+               +.+...
T Consensus       160 ~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v  239 (441)
T d1qnia2         160 AIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKV  239 (441)
T ss_dssp             EEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCC
T ss_pred             eecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCc
Confidence            2333332221111223469999999999999999754211             111111               111111


Q ss_pred             EEEEe--------cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC-------C--cEE-EEEeCCccceeEEEee
Q psy952          166 TRILT--------HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG-------K--HKH-IVISGQKVPHVFALTL  227 (573)
Q Consensus       166 ~~l~~--------~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG-------~--~~~-~l~~~~~~~~p~~ia~  227 (573)
                      .++..        .-..-..|.|+++++++++||++....+.|..++++-       .  .+. +......--.|..-++
T Consensus       240 ~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~f  319 (441)
T d1qnia2         240 PVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTF  319 (441)
T ss_dssp             CEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEE
T ss_pred             EEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCccccee
Confidence            11110        0123457999999999999999999999999999642       1  111 2222111124555566


Q ss_pred             eC-CeEEEecCCCCceEEEe
Q psy952          228 FE-DHIYWTDWNTKSINRAD  246 (573)
Q Consensus       228 ~~-~~lywtd~~~~~I~~~~  246 (573)
                      ++ ++.|-+-.-...|.+-+
T Consensus       320 d~~g~~yts~~~ds~v~kw~  339 (441)
T d1qnia2         320 DGRGNAYTTLFIDSQVCKWN  339 (441)
T ss_dssp             CSSSEEEEEETTTTEEEEEE
T ss_pred             cCCceEEEcccccceEEEec
Confidence            54 56777766666666554

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.60  E-value=6.8e-09  Score=67.69  Aligned_cols=34  Identities=41%  Similarity=1.025  Sum_probs=29.8

Q ss_pred             CCCCCceecCC-----CcccCCCcccCCCCCCCCCCCCCC
Q psy952          410 CDKDTEFACRN-----GHCIPKLWVCDFDNDCGDDSDEPA  444 (573)
Q Consensus       410 C~~~~~f~C~~-----g~ci~~~~~Cd~~~dC~d~sDE~~  444 (573)
                      |.++ +|+|.+     ++|||.+|+||+.+||.|+|||.+
T Consensus         2 C~~~-~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~   40 (42)
T d1k7ba_           2 CPPG-QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   40 (42)
T ss_dssp             CSTT-EECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCcC-cEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhc
Confidence            6667 899964     479999999999999999999975

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.59  E-value=1.3e-05  Score=81.35  Aligned_cols=189  Identities=8%  Similarity=-0.067  Sum_probs=134.7

Q ss_pred             ecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE--EcCCCCCcceeEEee---
Q psy952           23 NKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV--IRHDSHGLEGLAVDW---   97 (573)
Q Consensus        23 ~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i--~~~~~~~p~glavD~---   97 (573)
                      ..+.|..+++...+....+.....|.+++|.+.+++||.+.. .+.|..++++......+  +..+ ..|.++++..   
T Consensus        40 d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~~~-~~~~~~~~s~~~S  117 (432)
T d1qksa2          40 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIG-SEARSIETSKMEG  117 (432)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECC-SEEEEEEECCSTT
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEecC-CCCCCeEEecccC
Confidence            357899999987766544444467999999999999998865 57899999876544333  2222 4677877653   


Q ss_pred             -cCCcEEEEeCCCCeEEEEEcCCCceeEec-c-----------CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952           98 -VGRKLYWLDRHSKQLDVAELDGTNRKTLK-T-----------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN  164 (573)
Q Consensus        98 -~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~-----------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~  164 (573)
                       .++.||++....+.|.+.+.......... .           ....+.+|+++|....+||+... ...|...++....
T Consensus       118 pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~-~~~i~~~d~~~~~  196 (432)
T d1qksa2         118 WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKE-TGKILLVDYTDLN  196 (432)
T ss_dssp             CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETT-TTEEEEEETTCSS
T ss_pred             CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEcc-CCeEEEEEccCCC
Confidence             56789999988899999998755433222 1           12235678889988889998754 5678888775443


Q ss_pred             cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe
Q psy952          165 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS  215 (573)
Q Consensus       165 ~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~  215 (573)
                      ...+.. -..-..|.++++++++.+||++....+.|..++.+.........
T Consensus       197 ~~~~~~-i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         197 NLKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             cceEEE-EcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            222221 12335689999999999999999989999999998766654443

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.56  E-value=1.7e-05  Score=80.04  Aligned_cols=195  Identities=8%  Similarity=-0.051  Sum_probs=131.6

Q ss_pred             CEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc-CCCCCccee
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR-HDSHGLEGL   93 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-~~~~~p~gl   93 (573)
                      .+++++.  .+.|+.+++...+....+.....|.+|+|.+.+++||.+.. .+.|..++++......+.. .....|.++
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            3444444  57999999987655433444456999999999999998875 4689999998765433321 112467777


Q ss_pred             EEee----cCCcEEEEeCCCCeEEEEEcCCCceeEecc------------CCCCcceEEEeCCCceEEEEecCCcCeEEE
Q psy952           94 AVDW----VGRKLYWLDRHSKQLDVAELDGTNRKTLKT------------AIQDPRGITLHPGIGYVYFSSWNLQAYIGK  157 (573)
Q Consensus        94 avD~----~~~~LY~td~~~~~I~~~~ldg~~~~~l~~------------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r  157 (573)
                      ++..    .++.||++....+.|.+.++.......++.            ....+..|+..+....++|+..+ ...|..
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~-~~~i~~  189 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-TGKVLL  189 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-TTEEEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCC-CCeEEE
Confidence            7753    577899998888888888877654433221            11235677888888888888754 445554


Q ss_pred             Eecc-CCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe
Q psy952          158 IGMD-GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS  215 (573)
Q Consensus       158 ~~ld-G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~  215 (573)
                      .... +....+..  ...-..|.++++++.++++|++....+.+..++...........
T Consensus       190 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         190 VNYKDIDNLTVTS--IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  246 (426)
T ss_dssp             EECSSSSSCEEEE--EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred             EEeccccceeeEE--eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence            4443 33333222  23456789999999999999999999999888877655544443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.51  E-value=1.2e-05  Score=81.55  Aligned_cols=197  Identities=12%  Similarity=0.023  Sum_probs=135.8

Q ss_pred             CEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEe--ccCCCCcce
Q psy952           57 NRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL--KTAIQDPRG  134 (573)
Q Consensus        57 ~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l--~~~~~~P~~  134 (573)
                      +.++++....+.|..+++++......+..+ ..|.+++|.+.+++||.+.. .+.|.+.+++......+  +.....|++
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~-dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR-DGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEcC-CCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            455678888889999998876655555555 57999999999999999874 57899999875543333  245567899


Q ss_pred             EEEeC----CCceEEEEecCCcCeEEEEeccCCCcEEEEecC---------CCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952          135 ITLHP----GIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE---------DDIAWPNALTLDYFTERLYWADAHLDYIA  201 (573)
Q Consensus       135 Iavdp----~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~---------~~l~~P~glaiD~~~~~LYw~D~~~~~I~  201 (573)
                      +++.+    ...+||++... ...|...+.........+...         ..-..+.++++++.+.++||+-...+.|.
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~-~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYW-PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEE-TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eEEecccCCCCCEEEEEcCC-CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence            98875    45689998743 567777776654433332100         01122346788888899999999999999


Q ss_pred             EEeCCCCcEEEEEe-CCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          202 SVDLDGKHKHIVIS-GQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       202 ~~~~dG~~~~~l~~-~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      .++........+.. .. -..|.++++  ++.++|.+....+.|..++..++.....+.
T Consensus       189 ~~d~~~~~~~~~~~i~~-g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~  246 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISA-ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED  246 (432)
T ss_dssp             EEETTCSSEEEEEEEEC-CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             EEEccCCCcceEEEEcc-cCccccceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence            99886544322221 11 236777777  456789998888889888876666555543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.48  E-value=6.7e-06  Score=81.21  Aligned_cols=233  Identities=11%  Similarity=-0.013  Sum_probs=141.0

Q ss_pred             cEEEEEcCCCceee--ccc------CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEee
Q psy952           26 YVRNMSLDATQYSL--VHQ------DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDW   97 (573)
Q Consensus        26 ~I~~i~l~g~~~~~--~~~------~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~   97 (573)
                      .|+.+++.......  ..+      ....+.+++|.+.+++||+++...+.|..+++.+......+.    .|....+-+
T Consensus        97 ~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~  172 (368)
T d1mdah_          97 YVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK----SASCFHIHP  172 (368)
T ss_dssp             EEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE----CSSCCCCEE
T ss_pred             eEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee----ccCcceEcc
Confidence            47888877654322  111      223466899999999999999888999999987755433332    222223333


Q ss_pred             cCCcEEEEeCCCCeEEEEEcCCCceeEec--c-----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe
Q psy952           98 VGRKLYWLDRHSKQLDVAELDGTNRKTLK--T-----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT  170 (573)
Q Consensus        98 ~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~-----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~  170 (573)
                      .....+++....+++.+..+.........  .     ....+...+.++ .+.++++.   ...|+.+++++.....+..
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~---~~~v~~~~~~~~~~~~~~~  248 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY-PGMLVWAV---ASSILQGDIPAAGATMKAA  248 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT-TTEEEECB---SSCCEEEECCSSCCEEECC
T ss_pred             CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeeccccc-CcEEEEec---CCCEEEEeecCCceEEEee
Confidence            45667777766777777776543322211  1     112245555555 34444444   2345555555444333221


Q ss_pred             cCCC-----------CCCCceEEEeccCCeEEEEeCCC--------CeEEEEeCCCCcEEEEEeCCccceeEEEeee--C
Q psy952          171 HEDD-----------IAWPNALTLDYFTERLYWADAHL--------DYIASVDLDGKHKHIVISGQKVPHVFALTLF--E  229 (573)
Q Consensus       171 ~~~~-----------l~~P~glaiD~~~~~LYw~D~~~--------~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~--~  229 (573)
                       ...           ...+..+++.+..+++|++....        .+|+.++.....+...+..  -..|.+|++.  +
T Consensus       249 -~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~~a~spDG  325 (368)
T d1mdah_         249 -IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--GHDSDAIIAAQDG  325 (368)
T ss_dssp             -CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--EEEECEEEECCSS
T ss_pred             -cccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC--CCceeEEEECCCC
Confidence             000           11245789999999999985332        3577888765543221111  1357777773  3


Q ss_pred             C-eEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeee
Q psy952          230 D-HIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYH  270 (573)
Q Consensus       230 ~-~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~  270 (573)
                      . .||.+....+.|...+..+|+.+..|..+ ..|.+|.|..
T Consensus       326 ~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g-~~P~~l~~~~  366 (368)
T d1mdah_         326 ASDNYANSAGTEVLDIYDAASDQDQSSVELD-KGPESLSVQN  366 (368)
T ss_dssp             SCEEEEEETTTTEEEEEESSSCEEEEECCCC-SCCCEEECCC
T ss_pred             CEEEEEEeCCCCeEEEEECCCCCEEEEEECC-CCCCEEEEec
Confidence            3 48999999999999999999888777543 3699988854

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.44  E-value=7.1e-05  Score=69.90  Aligned_cols=236  Identities=17%  Similarity=0.091  Sum_probs=140.4

Q ss_pred             EEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC-----CeEEEEEcCCCcceEEEcCC------
Q psy952           18 WLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA-----KTIYRSRVGSTEKERVIRHD------   86 (573)
Q Consensus        18 ~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~i~~~~------   86 (573)
                      .|+|+..+.|+.+++++...+.+........+.+|.+.+++|+|+....     ..|++++++++....|....      
T Consensus        14 ~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~   93 (281)
T d1k32a2          14 RIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGR   93 (281)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETT
T ss_pred             EEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCc
Confidence            6777777889999999988877766667788899999999998874321     35999999887665543221      


Q ss_pred             CCCcceeEEeecCCcEEEEeCCC-----CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC---------c
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRHS-----KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL---------Q  152 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~~-----~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~---------~  152 (573)
                      ......+++.+.++.||++....     ..+...++++...+.+...  ....+...+....+|......         .
T Consensus        94 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (281)
T d1k32a2          94 RMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG--PATHILFADGRRVIGRNTFELPHWKGYRGGT  171 (281)
T ss_dssp             EECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC--SCSEEEEETTEEEEEESCSCCTTSTTCCSTT
T ss_pred             cccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCC--ccceeeecCCCeEEEeeccccceeeeeccCC
Confidence            12344566767788888876432     2456667776655443322  123344444333444433211         1


Q ss_pred             CeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC--CCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCC
Q psy952          153 AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA--HLDYIASVDLDGKHKHIVISGQKVPHVFALTLFED  230 (573)
Q Consensus       153 ~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~  230 (573)
                      ...............+.   .....-...+..  ...+++...  +...|+.++++|...+.|.... ...+..++.++.
T Consensus       172 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~-~~~~~~~SpDG~  245 (281)
T d1k32a2         172 RGKIWIEVNSGAFKKIV---DMSTHVSSPVIV--GHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGR  245 (281)
T ss_dssp             CCEEEEEEETTEEEEEE---CCSSCCEEEEEE--TTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSS
T ss_pred             cceeeeeccccceeecc---CCccccceeeee--ccccceecccccccceEEEeCCCCceEEeecCC-CcccccCcCCCC
Confidence            12222223333322222   111112223333  456666544  3457999999999888776543 234556778889


Q ss_pred             eEEEecCCCCceEEEeccCCcceEEEcccCCCc
Q psy952          231 HIYWTDWNTKSINRADKFNGRDYRVLRNTTHRP  263 (573)
Q Consensus       231 ~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p  263 (573)
                      +|+|+.  .+.|+.++..+|+..++....+..|
T Consensus       246 ~I~f~~--~~~l~~~d~~~g~~~~i~~~~~~~~  276 (281)
T d1k32a2         246 RILFSK--GGSIYIFNPDTEKIEKIEIGDLESP  276 (281)
T ss_dssp             CEEEEE--TTEEEEECTTTCCEEECCCCCCCBC
T ss_pred             EEEEEe--CCEEEEEECCCCCEEEeccCCcCCC
Confidence            999875  3579999876666555444334333

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.42  E-value=6.2e-06  Score=84.16  Aligned_cols=155  Identities=16%  Similarity=0.237  Sum_probs=105.2

Q ss_pred             EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc---CC------CCcceEEEeC---CCceEEEEe
Q psy952           81 RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT---AI------QDPRGITLHP---GIGYVYFSS  148 (573)
Q Consensus        81 ~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~---~~------~~P~~Iavdp---~~g~LYwtd  148 (573)
                      .++..++..|.+|++.+ .++||+++...++|.+++..+...+.+..   ..      .-..+||+||   .+++||++.
T Consensus        20 ~~ia~~L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsy   98 (450)
T d1crua_          20 KVILSNLNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (450)
T ss_dssp             EEEECCCSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             EEEECCCCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEE
Confidence            34566899999999987 56899999878999999987766555442   11      1135899998   478999874


Q ss_pred             cC-----------CcCeEEEEeccCCCc-----EEEEe--cCCCCCCCceEEEeccCCeEEEEeCC--------------
Q psy952          149 WN-----------LQAYIGKIGMDGSNF-----TRILT--HEDDIAWPNALTLDYFTERLYWADAH--------------  196 (573)
Q Consensus       149 ~~-----------~~~~I~r~~ldG~~~-----~~l~~--~~~~l~~P~glaiD~~~~~LYw~D~~--------------  196 (573)
                      ..           ....|.|...++...     ++++.  ....-+.-..|++++ +++||++-..              
T Consensus        99 t~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgp-DG~LYvs~Gd~~~~~~~~~~~~~~  177 (450)
T d1crua_          99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGP-DQKIYYTIGDQGRNQLAYLFLPNQ  177 (450)
T ss_dssp             EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECT-TSCEEEEECCTTTTSGGGTTSCCC
T ss_pred             ecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcC-CCCEEEEecCCCcccccccccccc
Confidence            20           012455666555432     22321  112234456899995 6789998432              


Q ss_pred             ------------------CCeEEEEeCCCCcE-----------EEEEeCCccceeEEEeee-CCeEEEecCCC
Q psy952          197 ------------------LDYIASVDLDGKHK-----------HIVISGQKVPHVFALTLF-EDHIYWTDWNT  239 (573)
Q Consensus       197 ------------------~~~I~~~~~dG~~~-----------~~l~~~~~~~~p~~ia~~-~~~lywtd~~~  239 (573)
                                        .++|.|++.||+..           +++..+  +.+|+++++. .+.||++|-+.
T Consensus       178 ~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G--~RNp~g~~~~p~g~l~~~e~G~  248 (450)
T d1crua_         178 AQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLG--HRNPQGLAFTPNGKLLQSEQGP  248 (450)
T ss_dssp             TTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBC--CSEEEEEEECTTSCEEEEEECS
T ss_pred             cccCcccccccccccccccCceEEeeccccccccccccccccceEEEec--cccccceeecccceeeeccccc
Confidence                              37899999998742           344445  7899999997 67899998653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.38  E-value=1.9e-05  Score=75.93  Aligned_cols=177  Identities=11%  Similarity=0.082  Sum_probs=104.5

Q ss_pred             CCEEEEEe-cccEEEEEcCCCceee--cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC------
Q psy952           16 KPWLIFSN-KYYVRNMSLDATQYSL--VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD------   86 (573)
Q Consensus        16 ~~~l~~s~-~~~I~~i~l~g~~~~~--~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~------   86 (573)
                      ..||+.++ .+.|..+++...++..  .+.....|.+|+|.+.+++||++....+.|+.+++........+...      
T Consensus         8 ~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~   87 (346)
T d1jmxb_           8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEV   87 (346)
T ss_dssp             CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccccccc
Confidence            45777666 4789999998765432  23445568999999999999999999999999999765432222211      


Q ss_pred             CCCcceeEEeecCCcEEEEeCC-----------CCeEEEEEcCC-CceeEec--cCCCCcceEEEeCCCceEEEEecCCc
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRH-----------SKQLDVAELDG-TNRKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQ  152 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~-----------~~~I~~~~ldg-~~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~  152 (573)
                      ...|.++++.+.++.||++...           ...|.+.+... .....+.  ........++ .+..+.+|+++.   
T Consensus        88 ~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---  163 (346)
T d1jmxb_          88 GRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMR-AADDGSLYVAGP---  163 (346)
T ss_dssp             EECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEE-ECTTSCEEEESS---
T ss_pred             CCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEE-ecCCCEEEEeCC---
Confidence            2368899999999999998632           23455554432 2211111  1111223333 444677777652   


Q ss_pred             CeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeE
Q psy952          153 AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI  200 (573)
Q Consensus       153 ~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I  200 (573)
                       .+...++........+   ....+|.++++.+....+|++....+.+
T Consensus       164 -~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (346)
T d1jmxb_         164 -DIYKMDVKTGKYTVAL---PLRNWNRKGYSAPDVLYFWPHQSPRHEF  207 (346)
T ss_dssp             -SEEEECTTTCCEEEEE---CSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred             -cceEEEccCCCEEEEE---ecCCCccceEEeccccEEEEEecCCCce
Confidence             2444444322222222   2234556666666666666555544433

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.36  E-value=3.3e-05  Score=77.85  Aligned_cols=203  Identities=11%  Similarity=0.037  Sum_probs=133.4

Q ss_pred             EEEcC-CCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec--c
Q psy952           51 DFHYK-ENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--T  127 (573)
Q Consensus        51 ~~d~~-~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~  127 (573)
                      .++.. .+.++++....+.|..+++........+..+ ..|.+|+|.+.+++||.+.. .+.|.+.+++......+.  .
T Consensus        25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~-d~~v~vwd~~t~~~~~~~~i~  102 (426)
T d1hzua2          25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGR-DARIDMIDLWAKEPTKVAEIK  102 (426)
T ss_dssp             CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEET-TSEEEEEETTSSSCEEEEEEE
T ss_pred             cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCC-CCeeEEEECCCCCEEEEEeC-CCCEEEEEccCCceeEEEEEe
Confidence            34433 3455677888899999998865544344444 57999999999999999875 478999999765543332  4


Q ss_pred             CCCCcceEEEeC----CCceEEEEecCCcCeEEEEeccCCCcEEEEecC---------CCCCCCceEEEeccCCeEEEEe
Q psy952          128 AIQDPRGITLHP----GIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE---------DDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       128 ~~~~P~~Iavdp----~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~---------~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      ....|.++++++    ...+||.+... ...|...+........+....         ..-..+..++..+....++|+.
T Consensus       103 ~~~~~~~~~~s~~~spDG~~l~v~~~~-~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~  181 (426)
T d1hzua2         103 IGIEARSVESSKFKGYEDRYTIAGAYW-PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV  181 (426)
T ss_dssp             CCSEEEEEEECCSTTCTTTEEEEEEEE-SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             CCCCCcceEEeeeecCCCCEEEEeecC-CCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec
Confidence            455688888875    56678888743 445555555544333332100         0011234567777888889998


Q ss_pred             CCCCeEEEEeCCCCcE-EEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          195 AHLDYIASVDLDGKHK-HIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       195 ~~~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      ...+.|..+....... .+..... -..|.++++  .+.++|++......+..++..+++.+..+.
T Consensus       182 ~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~  246 (426)
T d1hzua2         182 KETGKVLLVNYKDIDNLTVTSIGA-APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  246 (426)
T ss_dssp             TTTTEEEEEECSSSSSCEEEEEEC-CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEE
T ss_pred             CCCCeEEEEEeccccceeeEEecc-CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEec
Confidence            8888887777654332 2211111 357888887  466789999888999988887777665554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.33  E-value=0.0002  Score=69.05  Aligned_cols=240  Identities=10%  Similarity=0.004  Sum_probs=138.6

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC---------CCeEEEEEcCCCcceEEEc-C------CCC
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA---------AKTIYRSRVGSTEKERVIR-H------DSH   88 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~---------~~~I~~~~~~g~~~~~i~~-~------~~~   88 (573)
                      ..|+.++++..++...+.. +...+++|.+.++.||+++..         .+.|..+++.+......+. .      ...
T Consensus        28 ~~v~v~D~~tg~~~~~~~~-g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~  106 (355)
T d2bbkh_          28 TQQFVIDGEAGRVIGMIDG-GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGT  106 (355)
T ss_dssp             EEEEEEETTTTEEEEEEEE-CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSC
T ss_pred             CeEEEEECCCCcEEEEEEC-CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCC
Confidence            4688999876654322222 223379999999999998742         3568888886654322221 1      124


Q ss_pred             CcceeEEeecCCcEEEEeCCC-CeEEEEEcCCCce-eEecc-------CCCCcceEEEeCCCceEEEEecCC--------
Q psy952           89 GLEGLAVDWVGRKLYWLDRHS-KQLDVAELDGTNR-KTLKT-------AIQDPRGITLHPGIGYVYFSSWNL--------  151 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~-~~I~~~~ldg~~~-~~l~~-------~~~~P~~Iavdp~~g~LYwtd~~~--------  151 (573)
                      .|.++++.+.++.||+++... ..+.+.++..... ..+..       ....+..+++.+....+||.....        
T Consensus       107 ~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~  186 (355)
T d2bbkh_         107 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHT  186 (355)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEEC
T ss_pred             CCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEec
Confidence            688999999999999987543 3455555543322 11110       111244455665555555543211        


Q ss_pred             ----------------------------cCeEEEEeccCCCcEEEEecCCC----------CCCCceEEEeccCCeEEEE
Q psy952          152 ----------------------------QAYIGKIGMDGSNFTRILTHEDD----------IAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       152 ----------------------------~~~I~r~~ldG~~~~~l~~~~~~----------l~~P~glaiD~~~~~LYw~  193 (573)
                                                  ...|+..++++.....+......          ...+..+++.+...++||+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~  266 (355)
T d2bbkh_         187 EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL  266 (355)
T ss_dssp             CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             ccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEE
Confidence                                        12334444443332221100000          0123458888888899987


Q ss_pred             eCCC---------CeEEEEeCCCCcE-EEEEeCCccceeEEEeee--CCe-EEEecCCCCceEEEeccCCcceEEEcccC
Q psy952          194 DAHL---------DYIASVDLDGKHK-HIVISGQKVPHVFALTLF--EDH-IYWTDWNTKSINRADKFNGRDYRVLRNTT  260 (573)
Q Consensus       194 D~~~---------~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~--~~~-lywtd~~~~~I~~~~~~~g~~~~~l~~~~  260 (573)
                      ....         +.|..+++....+ ..+..+   ..|.+|++.  +.. ||++....+.|...+..+|+.+..|...-
T Consensus       267 ~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G  343 (355)
T d2bbkh_         267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG  343 (355)
T ss_dssp             EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred             eccCCceeecCCCCeEEEEeCCCCcEEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcC
Confidence            4422         3677777764433 333222   357788874  333 67888888999999999998888776545


Q ss_pred             CCceeeee
Q psy952          261 HRPYDIHV  268 (573)
Q Consensus       261 ~~p~~i~v  268 (573)
                      ..|.-|.+
T Consensus       344 ~~p~~i~~  351 (355)
T d2bbkh_         344 HGPQVITT  351 (355)
T ss_dssp             SSCCEEEC
T ss_pred             CCccEEEe
Confidence            56766544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.32  E-value=0.00041  Score=67.43  Aligned_cols=215  Identities=10%  Similarity=-0.059  Sum_probs=127.2

Q ss_pred             eEEEEEEcCCCEEEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEe
Q psy952           47 VVAMDFHYKENRFYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL  125 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l  125 (573)
                      +.+++|.+..+.+|+.... .+.+...+......  +.  ....|.++++.+.++.+|++....+.+.+.+..+......
T Consensus       127 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~  202 (373)
T d2madh_         127 SWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSD--DQ--LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG  202 (373)
T ss_pred             CCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeE--EE--EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence            5667787777777776644 33444444433221  11  2246888999988999999999999999988776544332


Q ss_pred             cc-------CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec----------CCCCCCCceEEEeccCC
Q psy952          126 KT-------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH----------EDDIAWPNALTLDYFTE  188 (573)
Q Consensus       126 ~~-------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~----------~~~l~~P~glaiD~~~~  188 (573)
                      ..       ....+..++.++...+++.+.   ..++......+.....+...          ...-..+..+++.+...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  279 (373)
T d2madh_         203 LVGAMLTAAQNLLTQPAQANKSGRIVWPVY---SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD  279 (373)
T ss_pred             EeeeccccCccceeeeEEECCCceEEEecC---CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCC
Confidence            21       112244555555333343332   33455555444332222100          00111234567777778


Q ss_pred             eEEEEeCC---------CCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCe-EEEecCCCCceEEEeccCCcceEEE
Q psy952          189 RLYWADAH---------LDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDH-IYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       189 ~LYw~D~~---------~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~-lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      ++|++...         .+.|..++.........+..  -..|.+|++  ++.+ ||.+....+.|+..+..+|+.+..+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~--~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~  357 (373)
T d2madh_         280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             eEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC--CCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE
Confidence            88876443         34556666543332222221  246788887  3444 6778888899999999999998888


Q ss_pred             cccCCCceeeeeee
Q psy952          257 RNTTHRPYDIHVYH  270 (573)
Q Consensus       257 ~~~~~~p~~i~v~~  270 (573)
                      ...-..|..|.|..
T Consensus       358 ~~~g~~P~~l~~~~  371 (373)
T d2madh_         358 VELGSGPQVLSVMN  371 (373)
T ss_pred             CCCCCCCcEEEEec
Confidence            76667898888764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=0.00075  Score=62.33  Aligned_cols=226  Identities=13%  Similarity=0.083  Sum_probs=137.2

Q ss_pred             cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC--CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952           26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA--KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY  103 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY  103 (573)
                      .|+.++.+|++...+......+...+|.+.+++|.++....  ..++.+.+++...+.+... ........+.+.+..|+
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-SSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee-ecccccceecCCCCeee
Confidence            69999999998887776666677889999999997775543  4688888887776655543 35666777777777776


Q ss_pred             EEeCCCC--eEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCce
Q psy952          104 WLDRHSK--QLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNA  180 (573)
Q Consensus       104 ~td~~~~--~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~g  180 (573)
                      +.-...+  .+..........................+....++++.. .....|.+..+++.....+.   ........
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~---~~~~~~~~  175 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT---WEGSQNQD  175 (269)
T ss_dssp             EEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC---CSSSEEEE
T ss_pred             EeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeee---cccccccc
Confidence            6554333  233333332222222233333344445555666666643 23567999999887766554   22222334


Q ss_pred             EEEeccCCeEEEEeCCCC--eEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecC--CCCceEEEeccCCcceEEE
Q psy952          181 LTLDYFTERLYWADAHLD--YIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW--NTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       181 laiD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~--~~~~I~~~~~~~g~~~~~l  256 (573)
                      .++.+.+..|++.....+  .|..++..+...+++........| ....++.+|+++..  ....|+.++. +|+..+.|
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p-~~SPDG~~i~f~s~~~~~~~l~~~~~-dg~~~~~l  253 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETP-SLAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARL  253 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEE-EECTTSSEEEEEEEETTEEEEEEEET-TSCCEEEC
T ss_pred             cccccccceeEEEeecCCceeeeEeecccccceEeecCccccce-EECCCCCEEEEEEcCCCCcEEEEEEC-CCCCEEEE
Confidence            567777888877765443  677788877776655443212222 23346777766532  2345777764 45544444


Q ss_pred             c
Q psy952          257 R  257 (573)
Q Consensus       257 ~  257 (573)
                      .
T Consensus       254 t  254 (269)
T d2hqsa1         254 P  254 (269)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.19  E-value=0.00026  Score=68.94  Aligned_cols=195  Identities=11%  Similarity=-0.027  Sum_probs=121.5

Q ss_pred             eEEEEEEcCCCEEEEEECCC----CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC---------CCeEE
Q psy952           47 VVAMDFHYKENRFYFADVAA----KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH---------SKQLD  113 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~----~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~---------~~~I~  113 (573)
                      +..+++.+...+||+++...    ..|+.++.........+..  ..+.++++.+.++.||++...         .+.|.
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~--~~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~  100 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--GFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC--CCCccEEEcCCCCEEEEEeecCCcccccccceEEE
Confidence            45677888889999886543    4688887655443323333  344589999999999998743         35688


Q ss_pred             EEEcCCCceeE-ec-------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEec
Q psy952          114 VAELDGTNRKT-LK-------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY  185 (573)
Q Consensus       114 ~~~ldg~~~~~-l~-------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~  185 (573)
                      +.++....... +.       .....|+++++.+..+.+|+..+.....+....+....  .+    .....|.++++.+
T Consensus       101 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~s~  174 (373)
T d2madh_         101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSS--DD----QLLSSPTCYHIHP  174 (373)
T ss_pred             EEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCe--EE----EEeccceeEEEec
Confidence            88877544322 21       12345899999998888888776544444444443322  21    2334578899998


Q ss_pred             cCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCC-----ccceeEEEeeeCCeEEEecCCCCceEEEeccC
Q psy952          186 FTERLYWADAHLDYIASVDLDGKHKHIVISGQ-----KVPHVFALTLFEDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       186 ~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~-----~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~  249 (573)
                      .+..+|++....+.+...+.............     ....+..+...++..++.-...++|+.++..+
T Consensus       175 ~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         175 GAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             CCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCC
Confidence            89999999999999988887765543332210     02233344444444444444455566555433

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.18  E-value=0.0018  Score=61.55  Aligned_cols=238  Identities=9%  Similarity=-0.017  Sum_probs=143.0

Q ss_pred             CCCEEEEEecccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc--eEEEcCCCCCcc
Q psy952           15 IKPWLIFSNKYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK--ERVIRHDSHGLE   91 (573)
Q Consensus        15 ~~~~l~~s~~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~i~~~~~~~p~   91 (573)
                      ....|+++..+.|...+++......++. ....+..|+|.+.++.| .+-...+.|..+++.....  ...+......+.
T Consensus        28 ~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~l-atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  106 (311)
T d1nr0a1          28 AGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC-ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK  106 (311)
T ss_dssp             TSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEESSSTTCCEEEEEECSSSCEE
T ss_pred             CCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeE-eccccCceEeeeeeeccccccccccccccCccc
Confidence            3346777888889888887654433333 34568899999865555 4445567898888876543  222332335678


Q ss_pred             eeEEeecCCcEEEEeCC-CCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE
Q psy952           92 GLAVDWVGRKLYWLDRH-SKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL  169 (573)
Q Consensus        92 glavD~~~~~LY~td~~-~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~  169 (573)
                      .|++.+.+..|..+-.. ...+.+.+++.... ..+.........|+++|...+++++-. ....|...++.........
T Consensus       107 ~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs-~d~~i~i~d~~~~~~~~~~  185 (311)
T d1nr0a1         107 DISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS-DDNTVAIFEGPPFKFKSTF  185 (311)
T ss_dssp             EEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE-TTSCEEEEETTTBEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccc-ccccccccccccccccccc
Confidence            88888766666655432 34566777764332 333334445789999998777777753 3456777776654444444


Q ss_pred             ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCc------cceeEEEeee-CCeEEEecCCCCce
Q psy952          170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK------VPHVFALTLF-EDHIYWTDWNTKSI  242 (573)
Q Consensus       170 ~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~------~~~p~~ia~~-~~~lywtd~~~~~I  242 (573)
                        ...-.....+++++.+..|+.+. ..+.|...++.............      .....+|++. .+.++.|-...+.|
T Consensus       186 --~~~~~~i~~v~~~p~~~~l~~~~-~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v  262 (311)
T d1nr0a1         186 --GEHTKFVHSVRYNPDGSLFASTG-GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTI  262 (311)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             --ccccccccccccCcccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeE
Confidence              23233447899997666665544 45677777765444333222110      1234577763 34444454455677


Q ss_pred             EEEeccCCcceEEEc
Q psy952          243 NRADKFNGRDYRVLR  257 (573)
Q Consensus       243 ~~~~~~~g~~~~~l~  257 (573)
                      ...+..+++..+++.
T Consensus       263 ~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         263 KIWNVATLKVEKTIP  277 (311)
T ss_dssp             EEEETTTTEEEEEEE
T ss_pred             EEEECCCCcEEEEEE
Confidence            777777776665554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.01  E-value=0.00072  Score=64.48  Aligned_cols=206  Identities=10%  Similarity=0.033  Sum_probs=127.3

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce--
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR--  122 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~--  122 (573)
                      +.+..|++++.+++|+++.  .+.|+..+++......++......+..|++.+.++.| .+-...+.|.+.++.....  
T Consensus        18 ~~~~~~a~~~~g~~l~~~~--~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~l-atg~~dg~i~iwd~~~~~~~~   94 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCN--GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC-ASGDVHGNVRIWDTTQTTHIL   94 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEE--TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEE-EEEETTSEEEEEESSSTTCCE
T ss_pred             CCeEEEEEcCCCCEEEEEe--CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeE-eccccCceEeeeeeecccccc
Confidence            3466789999999998874  4568888887655554554445688999998765544 5555678899988876542  


Q ss_pred             eE-eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952          123 KT-LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA  201 (573)
Q Consensus       123 ~~-l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~  201 (573)
                      .. +.........|+++|...+|..+-.+....+....++-......+  .........+++.+.+..++++-...+.|.
T Consensus        95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l--~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~  172 (311)
T d1nr0a1          95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNL--TGQARAMNSVDFKPSRPFRIISGSDDNTVA  172 (311)
T ss_dssp             EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCC--CCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred             ccccccccCccccccccccccccccccccccccccccccccccccccc--cccccccccccccccceeeecccccccccc
Confidence            22 223334578999999766666654333334545555532221111  122234568888887777787766778888


Q ss_pred             EEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          202 SVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       202 ~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      ..++............ ......|++. .+.++.+-...+.|...+..++.....+
T Consensus       173 i~d~~~~~~~~~~~~~-~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~  227 (311)
T d1nr0a1         173 IFEGPPFKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF  227 (311)
T ss_dssp             EEETTTBEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred             cccccccccccccccc-cccccccccCccccccccccccccccccccccccccccc
Confidence            8888765554444432 2345677764 3344444444566776676666555444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.00  E-value=0.00021  Score=71.67  Aligned_cols=146  Identities=9%  Similarity=0.018  Sum_probs=94.3

Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCCceeEec--cCCCCcceEEEeCCCceEEEEecCCcC-----------------eEE
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQA-----------------YIG  156 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~-----------------~I~  156 (573)
                      .+.++.||++|...++|.|++++......++  .....|+++++.|...++|++..+...                 .+.
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~  159 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT  159 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEE
Confidence            3558899999999999999999876555444  456789999999988999998654211                 122


Q ss_pred             EEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe--------------EEEEe---------------CCC
Q psy952          157 KIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY--------------IASVD---------------LDG  207 (573)
Q Consensus       157 r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~--------------I~~~~---------------~dG  207 (573)
                      .++........-+   ..-..|.+++++++++++|++......              |...+               ..+
T Consensus       160 ~iD~~t~~v~~qI---~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~  236 (441)
T d1qnia2         160 AIDAETMDVAWQV---IVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGD  236 (441)
T ss_dssp             EEETTTCSEEEEE---EESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             eecCccceeeEEE---ecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCC
Confidence            2333322211111   112368999999999999999765432              11111               011


Q ss_pred             CcE------------EEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEec
Q psy952          208 KHK------------HIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADK  247 (573)
Q Consensus       208 ~~~------------~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~  247 (573)
                      ...            ..|..+   ..|.|+++  ++.++|++......|..++.
T Consensus       237 ~~v~vvd~~~~~~v~~~IPvg---ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~  287 (441)
T d1qnia2         237 SKVPVVDGRGESEFTRYIPVP---KNPHGLNTSPDGKYFIANGKLSPTVSVIAI  287 (441)
T ss_dssp             CCCCEEECSSSCSSEEEECCB---SSCCCEEECTTSCEEEEECTTSSBEEEEEG
T ss_pred             CCcEEEEcccCCceEEEEeCC---CCccCceECCCCCEEEEeCCcCCcEEEEEe
Confidence            111            111111   35777777  56789999999999988873

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.94  E-value=0.00023  Score=67.60  Aligned_cols=141  Identities=12%  Similarity=0.044  Sum_probs=90.5

Q ss_pred             EEECCCCeEEEEEcCCCcceEEEc--CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEecc-----CCCCc
Q psy952           61 FADVAAKTIYRSRVGSTEKERVIR--HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKT-----AIQDP  132 (573)
Q Consensus        61 ~~d~~~~~I~~~~~~g~~~~~i~~--~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~-----~~~~P  132 (573)
                      ++-...++|+.+++........+.  .....|.+|++.+.++.||++....+.|.+.++..... ..+..     ....|
T Consensus         5 vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~   84 (337)
T d1pbyb_           5 LAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL   84 (337)
T ss_dssp             EEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred             EEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccce
Confidence            333345566666665433222222  12357899999998899999998889999999875443 22221     23458


Q ss_pred             ceEEEeCCCceEEEEecCC----------cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952          133 RGITLHPGIGYVYFSSWNL----------QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS  202 (573)
Q Consensus       133 ~~Iavdp~~g~LYwtd~~~----------~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~  202 (573)
                      .+++++|..++||++....          ...+...++........+   .....|.++++++.+.+||++..   .+..
T Consensus        85 ~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~~s~dg~~l~~~~~---~~~~  158 (337)
T d1pbyb_          85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF---EAPRQITMLAWARDGSKLYGLGR---DLHV  158 (337)
T ss_dssp             TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE---ECCSSCCCEEECTTSSCEEEESS---SEEE
T ss_pred             eeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEec---cccCCceEEEEcCCCCEEEEEcC---Ccce
Confidence            9999999999999986421          234444444433333323   23456899999999999999753   3444


Q ss_pred             EeCCC
Q psy952          203 VDLDG  207 (573)
Q Consensus       203 ~~~dG  207 (573)
                      ++...
T Consensus       159 ~d~~~  163 (337)
T d1pbyb_         159 MDPEA  163 (337)
T ss_dssp             EETTT
T ss_pred             eeeec
Confidence            55543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=0.0091  Score=56.76  Aligned_cols=241  Identities=8%  Similarity=-0.059  Sum_probs=143.7

Q ss_pred             CCCceeeCCCCCCEEEEEecccEEEEEcCCCce----ee-c-ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc
Q psy952            5 DESTCKRRDSIKPWLIFSNKYYVRNMSLDATQY----SL-V-HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE   78 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~----~~-~-~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~   78 (573)
                      +..+|.+......+|+-+....|+..++.....    .. . ......+..|+|.+.++.|+.+ ...+.|..+++....
T Consensus        52 ~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~-~~dg~i~iwd~~~~~  130 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVG-GEASTLSIWDLAAPT  130 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEE-ESSSEEEEEECCCC-
T ss_pred             CcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEe-ecccccccccccccc
Confidence            345677766555677766667788888864321    11 1 1223457899999877666554 456788888887543


Q ss_pred             ceEE--EcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeE
Q psy952           79 KERV--IRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYI  155 (573)
Q Consensus        79 ~~~i--~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I  155 (573)
                      .+.+  +.........+++.+.+..| ++-...+.|.+.++......... ........|++.+....|++...  ...|
T Consensus       131 ~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~--d~~v  207 (337)
T d1gxra_         131 PRIKAELTSSAPACYALAISPDSKVC-FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL--DNTV  207 (337)
T ss_dssp             -EEEEEEECSSSCEEEEEECTTSSEE-EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSEE
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence            3222  22233456677777654444 44445678999998765544333 34455788999997777777652  4567


Q ss_pred             EEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEE
Q psy952          156 GKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYW  234 (573)
Q Consensus       156 ~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lyw  234 (573)
                      ...++.........   ..-.....|++++.+..|+.+. ..+.|...++...........  .....+|++. .+.+++
T Consensus       208 ~i~d~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~--~~~i~~v~~s~~g~~l~  281 (337)
T d1gxra_         208 RSWDLREGRQLQQH---DFTSQIFSLGYCPTGEWLAVGM-ESSNVEVLHVNKPDKYQLHLH--ESCVLSLKFAYCGKWFV  281 (337)
T ss_dssp             EEEETTTTEEEEEE---ECSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTSSCEEEECCC--SSCEEEEEECTTSSEEE
T ss_pred             cccccccceeeccc---ccccceEEEEEcccccccceec-ccccccccccccccccccccc--ccccceEEECCCCCEEE
Confidence            66666533322222   2223457888987777776654 457788888877665433222  2345677763 344555


Q ss_pred             ecCCCCceEEEeccCCcceEE
Q psy952          235 TDWNTKSINRADKFNGRDYRV  255 (573)
Q Consensus       235 td~~~~~I~~~~~~~g~~~~~  255 (573)
                      +-...+.|...+..+++....
T Consensus       282 s~s~Dg~i~iwd~~~~~~~~~  302 (337)
T d1gxra_         282 STGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             EEETTSEEEEEETTTCCEEEE
T ss_pred             EEeCCCeEEEEECCCCCEEEE
Confidence            544556676666666654433

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.92  E-value=0.0019  Score=62.45  Aligned_cols=189  Identities=15%  Similarity=0.122  Sum_probs=107.4

Q ss_pred             CCCEEEEEe--cccEEEEEcCCCceeecccCCcceEEE--EEEc--CCC---EEEEEECC--CCeEEEEEcCCCc--ceE
Q psy952           15 IKPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAM--DFHY--KEN---RFYFADVA--AKTIYRSRVGSTE--KER   81 (573)
Q Consensus        15 ~~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v--~~d~--~~~---~ly~~d~~--~~~I~~~~~~g~~--~~~   81 (573)
                      +...|+++.  +..|+.++|+|..+..+.  .+.+..|  .++.  ..+   .++.++..  ..+|..+.+++..  ...
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            344566655  346999999998766543  2333333  2221  111   24555554  2355444444322  111


Q ss_pred             E------EcCCCCCcceeEE--eecCCcEEE-EeCCCCeEEEEEc--CC--CceeEec---cCCCCcceEEEeCCCceEE
Q psy952           82 V------IRHDSHGLEGLAV--DWVGRKLYW-LDRHSKQLDVAEL--DG--TNRKTLK---TAIQDPRGITLHPGIGYVY  145 (573)
Q Consensus        82 i------~~~~~~~p~glav--D~~~~~LY~-td~~~~~I~~~~l--dg--~~~~~l~---~~~~~P~~Iavdp~~g~LY  145 (573)
                      +      ....+..|.||++  +...+.+|. .....+.++...+  ++  .....++   .....+.|+++|..++.||
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence            1      1223457889998  666776654 3334567665444  33  2222233   2445699999999999999


Q ss_pred             EEecCCcCeEEEEecc---CCCcEEEEecCC-C-CCCCceEEEecc---CCeEEEEeCCCCeEEEEeCCC
Q psy952          146 FSSWNLQAYIGKIGMD---GSNFTRILTHED-D-IAWPNALTLDYF---TERLYWADAHLDYIASVDLDG  207 (573)
Q Consensus       146 wtd~~~~~~I~r~~ld---G~~~~~l~~~~~-~-l~~P~glaiD~~---~~~LYw~D~~~~~I~~~~~dG  207 (573)
                      +++-  ...|++..++   +...+.+..... . ..-|.||||-..   ++.|.+++.+.++...++..+
T Consensus       196 isEE--~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         196 IAEE--DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEET--TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             EecC--ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            9984  4578888876   333444432111 2 345789998643   357777777777666665544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.92  E-value=0.00085  Score=64.96  Aligned_cols=192  Identities=12%  Similarity=0.171  Sum_probs=115.0

Q ss_pred             EcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEee---cCC----cEEEEeCC--CCeEEEEEcCCCc--
Q psy952           53 HYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDW---VGR----KLYWLDRH--SKQLDVAELDGTN--  121 (573)
Q Consensus        53 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~---~~~----~LY~td~~--~~~I~~~~ldg~~--  121 (573)
                      ++....|+=||...+ |+.++|+|.....+   .++++..|.+=.   +++    .++.++..  +.+|.++.+++..  
T Consensus        37 ~p~~SlI~gTdK~~G-l~vYdL~G~~l~~~---~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~  112 (353)
T d1h6la_          37 NPQNSKLITTNKKSG-LAVYSLEGKMLHSY---HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT  112 (353)
T ss_dssp             CGGGCEEEEEETTSC-CEEEETTCCEEEEC---CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTE
T ss_pred             CcCccEEEEEcCcCC-EEEEcCCCcEEEec---ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccc
Confidence            334556677777665 99999988765432   335666655431   111    34566654  3466665555432  


Q ss_pred             eeEe-------ccCCCCcceEEE--eCCCceEEEEecCCcCeEE--EEeccCCC--cEEEEecCCCCCCCceEEEeccCC
Q psy952          122 RKTL-------KTAIQDPRGITL--HPGIGYVYFSSWNLQAYIG--KIGMDGSN--FTRILTHEDDIAWPNALTLDYFTE  188 (573)
Q Consensus       122 ~~~l-------~~~~~~P~~Iav--dp~~g~LYwtd~~~~~~I~--r~~ldG~~--~~~l~~~~~~l~~P~glaiD~~~~  188 (573)
                      ...+       ...+..|+||++  ++..|.+|..-....+.+.  ++..++..  ...++.....-..+.|+++|..++
T Consensus       113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~  192 (353)
T d1h6la_         113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYG  192 (353)
T ss_dssp             EEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTT
T ss_pred             cccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCC
Confidence            2222       134567999999  7877865544323345554  44444432  222321122234567999999999


Q ss_pred             eEEEEeCCCCeEEEEeCC---CCcEEEEEe--C-CccceeEEEeee-----CCeEEEecCCCCceEEEeccC
Q psy952          189 RLYWADAHLDYIASVDLD---GKHKHIVIS--G-QKVPHVFALTLF-----EDHIYWTDWNTKSINRADKFN  249 (573)
Q Consensus       189 ~LYw~D~~~~~I~~~~~d---G~~~~~l~~--~-~~~~~p~~ia~~-----~~~lywtd~~~~~I~~~~~~~  249 (573)
                      +||+++... .|++++++   +....++..  + .....|-||+++     +++|.+++.+.++....++.+
T Consensus       193 ~LyisEE~~-Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~  263 (353)
T d1h6la_         193 SLYIAEEDE-AIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQG  263 (353)
T ss_dssp             EEEEEETTT-EEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST
T ss_pred             cEEEecCcc-ceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCC
Confidence            999998754 67888775   333444433  2 125689999986     348888988888877666543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.89  E-value=0.00036  Score=66.98  Aligned_cols=172  Identities=10%  Similarity=0.063  Sum_probs=119.2

Q ss_pred             CEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC-CeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952           17 PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA-KTIYRSRVGSTEKERVIRHDSHGLEGLAV   95 (573)
Q Consensus        17 ~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~-~~I~~~~~~g~~~~~i~~~~~~~p~glav   95 (573)
                      .+|.++.+..|+.+++.+.....+. ....+..++|.+.++.|+++.... ..|+.+++++.....+. .....+..+++
T Consensus        16 ~~~a~~~~g~v~v~d~~~~~~~~~~-~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~-~~~~~v~~~~~   93 (360)
T d1k32a3          16 DLIAFVSRGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGV   93 (360)
T ss_dssp             GCEEEEETTEEEEECTTSSBEEECS-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEE
T ss_pred             CEEEEEECCeEEEEECCCCcEEEcc-CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee-CCCceEEeeee
Confidence            3566777889999999887665553 345689999999888888876544 47888888876655443 34467889999


Q ss_pred             eecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecC--------CcCeEEEEeccCCCcE
Q psy952           96 DWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWN--------LQAYIGKIGMDGSNFT  166 (573)
Q Consensus        96 D~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~--------~~~~I~r~~ldG~~~~  166 (573)
                      .+.++.|+.+. ..+.|.+.++++.....+. ........+++.|...+|.++...        ....+...++.+....
T Consensus        94 spdg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~  172 (360)
T d1k32a3          94 DRNGKFAVVAN-DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF  172 (360)
T ss_dssp             CTTSSEEEEEE-TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE
T ss_pred             cccccccceec-cccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCcee
Confidence            98777777665 4567888898877665554 344567899999988888877532        1234555666554333


Q ss_pred             EEEecCCCCCCCceEEEeccCCeEEEEe
Q psy952          167 RILTHEDDIAWPNALTLDYFTERLYWAD  194 (573)
Q Consensus       167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D  194 (573)
                      .+.   .......++++.+.+.+|++..
T Consensus       173 ~~~---~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         173 AAT---TENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             ECS---CSSSBEEEEEECTTSCEEEEEE
T ss_pred             eec---ccccccccccccCCCCEEEEEe
Confidence            322   3333446788888888888764

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=97.81  E-value=0.00018  Score=68.69  Aligned_cols=100  Identities=13%  Similarity=0.078  Sum_probs=69.3

Q ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-
Q psy952           49 AMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-  126 (573)
Q Consensus        49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-  126 (573)
                      |++|...+ +.+++....+.|..++++..... ++....-..|.+|++.+.++.||++....+.|.+.++........+ 
T Consensus         1 g~a~~~~~-~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           1 GPALKAGH-EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCCTTC-EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CccCCCCC-cEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            34565434 44444445568888888754332 2222233579999999989999999988899999998765443222 


Q ss_pred             c------CCCCcceEEEeCCCceEEEEec
Q psy952          127 T------AIQDPRGITLHPGIGYVYFSSW  149 (573)
Q Consensus       127 ~------~~~~P~~Iavdp~~g~LYwtd~  149 (573)
                      .      ....|.+++++|...+||++..
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEec
Confidence            1      1235999999999999999863

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.75  E-value=0.00059  Score=65.34  Aligned_cols=178  Identities=10%  Similarity=0.087  Sum_probs=115.7

Q ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCC-CeEEEEEcCCCceeEecc
Q psy952           49 AMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHS-KQLDVAELDGTNRKTLKT  127 (573)
Q Consensus        49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~-~~I~~~~ldg~~~~~l~~  127 (573)
                      +.+|.|.+++++.+. ..+.|+.++++++....+ .. -..+..+++.+.++.|+++.... ..|.+.++.+...+.+..
T Consensus         7 ~~~fSP~dG~~~a~~-~~g~v~v~d~~~~~~~~~-~~-~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~   83 (360)
T d1k32a3           7 AEDFSPLDGDLIAFV-SRGQAFIQDVSGTYVLKV-PE-PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE   83 (360)
T ss_dssp             EEEEEECGGGCEEEE-ETTEEEEECTTSSBEEEC-SC-CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC
T ss_pred             cccccCCCCCEEEEE-ECCeEEEEECCCCcEEEc-cC-CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC
Confidence            346666444443332 235777777776554433 22 35788999998888888765443 468889998887777777


Q ss_pred             CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC---------CC
Q psy952          128 AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH---------LD  198 (573)
Q Consensus       128 ~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~---------~~  198 (573)
                      ....+..++++|...+|.....  ...|....+++.....+.  .........+++.+.+.+|.++...         ..
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVAND--RFEIMTVDLETGKPTVIE--RSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEET--TSEEEEEETTTCCEEEEE--ECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             CCceEEeeeecccccccceecc--ccccccccccccceeeee--ecccccccchhhccceeeeeeeccccccceeecccc
Confidence            7777899999998777777663  567888888877766665  3444456789999888888876432         12


Q ss_pred             eEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEe
Q psy952          199 YIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWT  235 (573)
Q Consensus       199 ~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywt  235 (573)
                      .+...++.+.....+...  .....++++  ++.+|++.
T Consensus       160 ~~~v~d~~~~~~~~~~~~--~~~~~~~~~spdg~~l~~~  196 (360)
T d1k32a3         160 AIHVYDMEGRKIFAATTE--NSHDYAPAFDADSKNLYYL  196 (360)
T ss_dssp             EEEEEETTTTEEEECSCS--SSBEEEEEECTTSCEEEEE
T ss_pred             ceeeeccccCceeeeccc--ccccccccccCCCCEEEEE
Confidence            466667766554443332  223444444  34556655

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.02  Score=54.21  Aligned_cols=211  Identities=8%  Similarity=-0.006  Sum_probs=125.8

Q ss_pred             ceeeCCCCCCEEEEEe-cccEEEEEcCCCceee---cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE
Q psy952            8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSL---VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI   83 (573)
Q Consensus         8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~---~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~   83 (573)
                      +|.+......+|+.+. .+.|+..++.......   +......+..+++++....|+.+ ...+.|..+++.........
T Consensus       101 ~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~d~~i~~~~~~~~~~~~~~  179 (337)
T d1gxra_         101 RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC-CSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             EEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccc
Confidence            4444432334565554 4678888876543322   22233456788898765555544 45667888888765544444


Q ss_pred             cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           84 RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        84 ~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      ......+..|++.+.+..|+++. ..+.|.+.++..............+..|+++|...+|+...  ....|...++...
T Consensus       180 ~~~~~~v~~l~~s~~~~~~~~~~-~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~--~d~~i~i~d~~~~  256 (337)
T d1gxra_         180 QGHTDGASCIDISNDGTKLWTGG-LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGM--ESSNVEVLHVNKP  256 (337)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTSS
T ss_pred             ccccccccccccccccccccccc-ccccccccccccceeecccccccceEEEEEcccccccceec--ccccccccccccc
Confidence            43345677888887666666665 45788888886544333334445578999999777776655  2456777777765


Q ss_pred             CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee
Q psy952          164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF  228 (573)
Q Consensus       164 ~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~  228 (573)
                      ......   ..-.....|++.+.+..|+- -...+.|...+............  ......+++.
T Consensus       257 ~~~~~~---~~~~~i~~v~~s~~g~~l~s-~s~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~s  315 (337)
T d1gxra_         257 DKYQLH---LHESCVLSLKFAYCGKWFVS-TGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDIS  315 (337)
T ss_dssp             CEEEEC---CCSSCEEEEEECTTSSEEEE-EETTSEEEEEETTTCCEEEEEEC--SSCEEEEEEC
T ss_pred             cccccc---ccccccceEEECCCCCEEEE-EeCCCeEEEEECCCCCEEEEccC--CCCEEEEEEe
Confidence            543332   22334578888876655554 34557788777765443322222  2355667663

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.72  E-value=0.00093  Score=64.10  Aligned_cols=150  Identities=14%  Similarity=0.035  Sum_probs=91.6

Q ss_pred             EcCCCEEEEEECC----CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC---------CCeEEEEEcCC
Q psy952           53 HYKENRFYFADVA----AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH---------SKQLDVAELDG  119 (573)
Q Consensus        53 d~~~~~ly~~d~~----~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~---------~~~I~~~~ldg  119 (573)
                      .+...+||+++..    ...|+.++++.......+..+  ...+|++.+.++.||+++..         .+.|.+.++..
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            3567778888753    235888887655432223323  33479999999999998742         35788888865


Q ss_pred             Ccee-Eec-------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC------CCCCceEEEec
Q psy952          120 TNRK-TLK-------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD------IAWPNALTLDY  185 (573)
Q Consensus       120 ~~~~-~l~-------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~------l~~P~glaiD~  185 (573)
                      .... .+.       .....|.++++.|..+++|+++......+...++........+. ...      ...+..+++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  166 (355)
T d2bbkh_          88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD-VPDCYHIFPTAPDTFFMHCR  166 (355)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CCSEEEEEEEETTEEEEEET
T ss_pred             CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe-cCCcceEeecCCcceEEEcC
Confidence            4433 221       12346999999999999999986655555555554333222221 110      11234567777


Q ss_pred             cCCeEEEEeCCCCeEEEEeC
Q psy952          186 FTERLYWADAHLDYIASVDL  205 (573)
Q Consensus       186 ~~~~LYw~D~~~~~I~~~~~  205 (573)
                      .+..+||.....+.+...+.
T Consensus       167 dg~~~~v~~~~~~~~~~~~~  186 (355)
T d2bbkh_         167 DGSLAKVAFGTEGTPEITHT  186 (355)
T ss_dssp             TSCEEEEECCSSSCCEEEEC
T ss_pred             CCCEEEEEecCCCeEEEEec
Confidence            77777777666665555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.61  E-value=0.00095  Score=65.38  Aligned_cols=188  Identities=13%  Similarity=0.128  Sum_probs=119.1

Q ss_pred             CCEEEEEECCCCeEEEEEcCCCcceEEEc-CCCCCcceeEEeecCCcEEEEeCCC-------------------CeEEEE
Q psy952           56 ENRFYFADVAAKTIYRSRVGSTEKERVIR-HDSHGLEGLAVDWVGRKLYWLDRHS-------------------KQLDVA  115 (573)
Q Consensus        56 ~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-~~~~~p~glavD~~~~~LY~td~~~-------------------~~I~~~  115 (573)
                      +++||+.|..+.+|.|++++.-....|+. .....+.|+.+....+..|+.....                   +.+.++
T Consensus        99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I  178 (459)
T d1fwxa2          99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV  178 (459)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred             eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence            67899999999999999998766544543 3457899999877777888875322                   223455


Q ss_pred             EcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCc-------------CeEEEEec---------------------c
Q psy952          116 ELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQ-------------AYIGKIGM---------------------D  161 (573)
Q Consensus       116 ~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~-------------~~I~r~~l---------------------d  161 (573)
                      +.+......-+.-..+|.++++++..+++|+|.....             ..|...+.                     |
T Consensus       179 D~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD  258 (459)
T d1fwxa2         179 DADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVD  258 (459)
T ss_dssp             ETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEE
T ss_pred             ecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeec
Confidence            5554332221222346899999999999999964321             01111111                     1


Q ss_pred             CC-----CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC--------CCc-EEEEEeC-CccceeEEEe
Q psy952          162 GS-----NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD--------GKH-KHIVISG-QKVPHVFALT  226 (573)
Q Consensus       162 G~-----~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d--------G~~-~~~l~~~-~~~~~p~~ia  226 (573)
                      +.     .....+   ..-..|.|+.+++++.+||++......+..+++.        +.. +.++... ..--.|.--+
T Consensus       259 ~~~~~~~~v~~yI---PVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~  335 (459)
T d1fwxa2         259 GRKEASSLFTRYI---PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTA  335 (459)
T ss_dssp             CSGG--CSSEEEE---EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEE
T ss_pred             ccccCCcceeEEE---ecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccc
Confidence            11     111111   1225699999999999999999888999999874        211 1222221 1012566667


Q ss_pred             eeC-CeEEEecCCCCceEEEe
Q psy952          227 LFE-DHIYWTDWNTKSINRAD  246 (573)
Q Consensus       227 ~~~-~~lywtd~~~~~I~~~~  246 (573)
                      +++ +..|.|-.-...|.+-+
T Consensus       336 fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         336 FDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             ECTTSEEEEEETTTTEEEEEE
T ss_pred             cCCCceEEEEeeccceEEEEe
Confidence            754 56888877777776555

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.56  E-value=0.0003  Score=68.78  Aligned_cols=99  Identities=6%  Similarity=-0.187  Sum_probs=67.9

Q ss_pred             ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC---------CCeEEEEEcCCCcceEEEc--C-----CCC
Q psy952           25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA---------AKTIYRSRVGSTEKERVIR--H-----DSH   88 (573)
Q Consensus        25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~---------~~~I~~~~~~g~~~~~i~~--~-----~~~   88 (573)
                      ..|+.++.++......+.....+ ++++.+..+.||++...         .+.|..+++.+......+.  .     ...
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~  124 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             ceEEEEeCCCCcEEEEEeCCCCC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence            45888888766543333322223 68899999999998742         2458888876544322221  1     135


Q ss_pred             CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952           89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT  124 (573)
Q Consensus        89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~  124 (573)
                      .|.++++.+.+++||+++...+.|.+.++.......
T Consensus       125 ~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~  160 (368)
T d1mdah_         125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ  160 (368)
T ss_dssp             CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE
T ss_pred             CccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeE
Confidence            688999999999999999888899999987765433

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.071  Score=50.77  Aligned_cols=258  Identities=9%  Similarity=0.034  Sum_probs=138.9

Q ss_pred             CCceeeCCCCCCEEEEEecccEEEEEcCCCceeecc-------------------cCCcceEEEEEEcCCCEEEEEECCC
Q psy952            6 ESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVH-------------------QDLLNVVAMDFHYKENRFYFADVAA   66 (573)
Q Consensus         6 g~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~-------------------~~~~~~~~v~~d~~~~~ly~~d~~~   66 (573)
                      -.+|.+......+|+.+....|+..++........+                   .....+.+|+|.+.++.|+. -...
T Consensus        64 ~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s-~~~d  142 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT-GAED  142 (388)
T ss_dssp             CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE-EETT
T ss_pred             cEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCccee-cccc
Confidence            356666543334666666678888887543221110                   11223678999976555554 4456


Q ss_pred             CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEE
Q psy952           67 KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYF  146 (573)
Q Consensus        67 ~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYw  146 (573)
                      +.|...+................+..+++.+.+..++.+. ..+.|.+.++..............+..+++.+..+.++.
T Consensus       143 g~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  221 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA  221 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-cceeeeeeeccccccccccccccccccccccCCCCCeEE
Confidence            6788888765544333333345667778776555565554 467788888876655444444445667777776666665


Q ss_pred             EecCCcCeEEEEeccCCCcEEEEe-cC----CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEE--------
Q psy952          147 SSWNLQAYIGKIGMDGSNFTRILT-HE----DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIV--------  213 (573)
Q Consensus       147 td~~~~~~I~r~~ldG~~~~~l~~-~~----~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l--------  213 (573)
                      +-. ....|...++........+. ..    ........|++.+.+..|+.+ ...+.|...++........        
T Consensus       222 ~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~~~  299 (388)
T d1erja_         222 AGS-LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-SLDRSVKLWNLQNANNKSDSKTPNSGT  299 (388)
T ss_dssp             EEE-TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-ETTSEEEEEEC---------------C
T ss_pred             EEc-CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEE-ECCCcEEEEeccCCccccccccccccc
Confidence            542 24556666655333222210 00    011223578888766555544 3456777776653322111        


Q ss_pred             ----EeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeee
Q psy952          214 ----ISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHV  268 (573)
Q Consensus       214 ----~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v  268 (573)
                          .... ......+++. .+.++++-...+.|...+..+++.+.++.........+++
T Consensus       300 ~~~~~~~~-~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~  358 (388)
T d1erja_         300 CEVTYIGH-KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAV  358 (388)
T ss_dssp             EEEEEECC-SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred             eeeecccc-cceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEE
Confidence                0111 1234566663 3344444445677877787778776666543333444443

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.30  E-value=0.082  Score=50.54  Aligned_cols=225  Identities=11%  Similarity=0.107  Sum_probs=126.0

Q ss_pred             CCCceeeCCCCCCEEEEEec-ccEEEEEcCCCceeec--cc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce
Q psy952            5 DESTCKRRDSIKPWLIFSNK-YYVRNMSLDATQYSLV--HQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE   80 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~~-~~I~~i~l~g~~~~~~--~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~   80 (573)
                      +=.+|.+......+|+++.. +.|+..++++..+..+  +. ....+..|+|.+.++.|.-+. ..+.|+..++++...+
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s-~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEE-CCCeEEEEeecccccc
Confidence            44577776544456666654 5788888876654322  22 234588999998777666554 4567888888655433


Q ss_pred             EEE--cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEe----cc-CCCCcceEEEeCCCceEEEEecCCcC
Q psy952           81 RVI--RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL----KT-AIQDPRGITLHPGIGYVYFSSWNLQA  153 (573)
Q Consensus        81 ~i~--~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l----~~-~~~~P~~Iavdp~~g~LYwtd~~~~~  153 (573)
                      .++  ......+..|++.+.++.|+... ..+.|.+.+++.......    .. .-.....++++|...+|....  ...
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s--~D~  163 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEKKFAVGS-GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS--CDF  163 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSSEEEEEE-TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEE--TTS
T ss_pred             cccccccccccccccccccccccceeec-ccCcceeeeeecccccccccccccccccccccccccccccceeccc--cCc
Confidence            222  22235678899988766666654 456677766654432221    12 223467899999655554333  234


Q ss_pred             eEEEEeccCCC----------------cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCC
Q psy952          154 YIGKIGMDGSN----------------FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ  217 (573)
Q Consensus       154 ~I~r~~ldG~~----------------~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~  217 (573)
                      .|...++....                ...+...........++++.+.+.+|+.+. ..+.|...++........+...
T Consensus       164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~  242 (371)
T d1k8kc_         164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-HDSTVCLADADKKMAVATLASE  242 (371)
T ss_dssp             CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE-TTTEEEEEEGGGTTEEEEEECS
T ss_pred             EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccc-cCCcceEEeeecccceeeeecc
Confidence            44444432211                111221112233456888998777776664 4677888887654443333322


Q ss_pred             ccceeEEEeee-CCeEEEe
Q psy952          218 KVPHVFALTLF-EDHIYWT  235 (573)
Q Consensus       218 ~~~~p~~ia~~-~~~lywt  235 (573)
                       .....+|++. ++.++.+
T Consensus       243 -~~~v~s~~fs~d~~~la~  260 (371)
T d1k8kc_         243 -TLPLLAVTFITESSLVAA  260 (371)
T ss_dssp             -SCCEEEEEEEETTEEEEE
T ss_pred             -cccceeeeecCCCCEEEE
Confidence             1223567663 4444444

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.078  Score=47.87  Aligned_cols=183  Identities=11%  Similarity=0.060  Sum_probs=105.2

Q ss_pred             EEEEEECCCC----eEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC--CCeEEEEEcCCCceeEeccCCCC
Q psy952           58 RFYFADVAAK----TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH--SKQLDVAELDGTNRKTLKTAIQD  131 (573)
Q Consensus        58 ~ly~~d~~~~----~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~--~~~I~~~~ldg~~~~~l~~~~~~  131 (573)
                      -.|+++...+    .|+.++.+|+....|.... ......++.+.+++|.|+...  ...+.+.++++...+.+......
T Consensus         6 iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (269)
T d2hqsa1           6 IAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH   84 (269)
T ss_dssp             EEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred             EEEEEEeCCCCceEEEEEEcCCCCCcEEEecCC-CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecc
Confidence            3466665432    4888889998887776433 334456777788999776533  34688888888888777776677


Q ss_pred             cceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC--CeEEEEeCCCC
Q psy952          132 PRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL--DYIASVDLDGK  208 (573)
Q Consensus       132 P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~--~~I~~~~~dG~  208 (573)
                      ......+|....|++..... ...+..............   .................++++....  ..|...++++.
T Consensus        85 ~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~  161 (269)
T d2hqsa1          85 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG  161 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECC---CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred             cccceecCCCCeeeEeeecCCccceeecccccccceeee---eccccccccccccccccceecccccCCceEeeeecccc
Confidence            78888888777766654322 223333332222222211   2222222334445566677765433  47888888887


Q ss_pred             cEEEEEeCCccceeEEEee--eCCeEEEecCCCC--ceEEEe
Q psy952          209 HKHIVISGQKVPHVFALTL--FEDHIYWTDWNTK--SINRAD  246 (573)
Q Consensus       209 ~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~--~I~~~~  246 (573)
                      ....+....  ......++  .+..|++.....+  .|...+
T Consensus       162 ~~~~~~~~~--~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~  201 (269)
T d2hqsa1         162 APQRITWEG--SQNQDADVSSDGKFMVMVSSNGGQQHIAKQD  201 (269)
T ss_dssp             CCEECCCSS--SEEEEEEECTTSSEEEEEEECSSCEEEEEEE
T ss_pred             cceeeeccc--ccccccccccccceeEEEeecCCceeeeEee
Confidence            666554432  22222233  4555665543332  344444

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00013  Score=46.65  Aligned_cols=40  Identities=38%  Similarity=0.958  Sum_probs=32.4

Q ss_pred             CccccCCCCCccCCccccCCCCccccCCCCceecCCCccccc
Q psy952          346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTD  387 (573)
Q Consensus       346 ~~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~~~  387 (573)
                      ++||..  +..|.+.|.|+.++|.|.|+.+|++..+++.|.+
T Consensus         1 idEC~~--~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           1 IDECQD--PDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             CCTTTT--TTSCSSCEECSSSCCEECCCTTEEECTTTCCEEE
T ss_pred             CccCCC--CCCCCCEeECCCCCEEeECCCCCeECCCCCcccc
Confidence            356753  4679999999999999999999999877665543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.93  E-value=0.18  Score=47.93  Aligned_cols=206  Identities=11%  Similarity=-0.021  Sum_probs=111.5

Q ss_pred             eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE--EcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee-
Q psy952           47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV--IRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK-  123 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i--~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~-  123 (573)
                      +..++|++....|.. -..++.|..+++++...+.+  +......+..|++.+.++.|. +-...+.|.+.+++....+ 
T Consensus        10 It~~~~s~dg~~la~-~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~-s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAI-CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             CCEEEECTTSSEEEE-ECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEE-EEETTSCEEEEEEETTEEEE
T ss_pred             eEEEEECCCCCEEEE-EeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEE-EEECCCeEEEEeeccccccc
Confidence            578899986555544 45567888888876543322  333335688999987665554 4445678888888755433 


Q ss_pred             Eec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE-ecCCCC-CCCceEEEeccCCeEEEEeCCCCe
Q psy952          124 TLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL-THEDDI-AWPNALTLDYFTERLYWADAHLDY  199 (573)
Q Consensus       124 ~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~-~~~~~l-~~P~glaiD~~~~~LYw~D~~~~~  199 (573)
                      ++.  ..-..+..|+++|...+|+....  ...|....++........ ...... .....+++++.+..| .+-...+.
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s~D~~  164 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL-AAGSCDFK  164 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE-EEEETTSC
T ss_pred             ccccccccccccccccccccccceeecc--cCcceeeeeecccccccccccccccccccccccccccccce-eccccCcE
Confidence            222  23445889999997777766653  344544444443332221 101222 233578887655555 44334556


Q ss_pred             EEEEeCCCCc----------------EEEEEeC-CccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          200 IASVDLDGKH----------------KHIVISG-QKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       200 I~~~~~dG~~----------------~~~l~~~-~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      |...+.....                ...+... .......+|++. .+.++++-...+.|...+...+.....+.
T Consensus       165 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~  240 (371)
T d1k8kc_         165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  240 (371)
T ss_dssp             EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             EEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeee
Confidence            6555543211                0112211 112334666663 23333333345667766766665555443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.93  E-value=0.04  Score=53.62  Aligned_cols=186  Identities=10%  Similarity=0.104  Sum_probs=117.0

Q ss_pred             CEEEEEe--cccEEEEEcCCCceee--cccCCcceEEEEEEcCCCEEEEEECCC-------------------CeEEEEE
Q psy952           17 PWLIFSN--KYYVRNMSLDATQYSL--VHQDLLNVVAMDFHYKENRFYFADVAA-------------------KTIYRSR   73 (573)
Q Consensus        17 ~~l~~s~--~~~I~~i~l~g~~~~~--~~~~~~~~~~v~~d~~~~~ly~~d~~~-------------------~~I~~~~   73 (573)
                      .||++.+  ..+|.||+|+..+...  .+++...+.|+......+..|++....                   +.+..++
T Consensus       100 rylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID  179 (459)
T d1fwxa2         100 RFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVD  179 (459)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEE
T ss_pred             eEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEe
Confidence            3666665  4789999999876543  456777889988866666777765332                   2234556


Q ss_pred             cCCCcce-EEEcCCCCCcceeEEeecCCcEEEEeCCC--------------CeEEEEEc--------CCC----------
Q psy952           74 VGSTEKE-RVIRHDSHGLEGLAVDWVGRKLYWLDRHS--------------KQLDVAEL--------DGT----------  120 (573)
Q Consensus        74 ~~g~~~~-~i~~~~~~~p~glavD~~~~~LY~td~~~--------------~~I~~~~l--------dg~----------  120 (573)
                      .+..... .+...  ..|.++++++.++.+|+|....              ..|.+++.        +|.          
T Consensus       180 ~~tm~V~~QV~V~--g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VV  257 (459)
T d1fwxa2         180 ADKWEVAWQVLVS--GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVV  257 (459)
T ss_dssp             TTTTEEEEEEEES--SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEE
T ss_pred             cCCceEEEEeeeC--CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceee
Confidence            5543322 22222  4789999999999999986432              12333332        111          


Q ss_pred             --------ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc--------CCC-cEEEEecCCCCCCCceEEE
Q psy952          121 --------NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD--------GSN-FTRILTHEDDIAWPNALTL  183 (573)
Q Consensus       121 --------~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld--------G~~-~~~l~~~~~~l~~P~glai  183 (573)
                              .....+.....|.|+.++|...+||++.. -.+.+.++++.        +.. +.+++...+--..|---++
T Consensus       258 D~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGK-Ls~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~f  336 (459)
T d1fwxa2         258 DGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK-LSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAF  336 (459)
T ss_dssp             ECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECT-TSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEE
T ss_pred             cccccCCcceeEEEecCCCCCceEECCCCCEEEEeCC-cCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccccc
Confidence                    11111233456999999999999999984 35667777663        211 2333321233446777888


Q ss_pred             eccCCeEEEEeCCCCeEEEEeCC
Q psy952          184 DYFTERLYWADAHLDYIASVDLD  206 (573)
Q Consensus       184 D~~~~~LYw~D~~~~~I~~~~~d  206 (573)
                      |- .+..|.+-.-...|.+-+++
T Consensus       337 d~-~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         337 DG-RGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CT-TSEEEEEETTTTEEEEEEHH
T ss_pred             CC-CceEEEEeeccceEEEEecc
Confidence            84 67899998888888887764

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.17  Score=47.30  Aligned_cols=240  Identities=10%  Similarity=0.007  Sum_probs=129.2

Q ss_pred             CCEEEEEecccEEEEEcCC--Cce--eecccC--CcceEEEEEEcC-CCEEEEEECCCCeEEEEEcCCCc-ceE------
Q psy952           16 KPWLIFSNKYYVRNMSLDA--TQY--SLVHQD--LLNVVAMDFHYK-ENRFYFADVAAKTIYRSRVGSTE-KER------   81 (573)
Q Consensus        16 ~~~l~~s~~~~I~~i~l~g--~~~--~~~~~~--~~~~~~v~~d~~-~~~ly~~d~~~~~I~~~~~~g~~-~~~------   81 (573)
                      ...|+++....+....++.  ...  .....+  ...+..|+|.+. ++.++.+-...+.|...++.... ...      
T Consensus        29 ~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~  108 (325)
T d1pgua1          29 TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVK  108 (325)
T ss_dssp             TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccc
Confidence            3567777765554333332  111  111222  245789999875 44555565567777776653321 111      


Q ss_pred             -EEcCCCCCcceeEEeecCCcEEEEeC-CCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEE
Q psy952           82 -VIRHDSHGLEGLAVDWVGRKLYWLDR-HSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI  158 (573)
Q Consensus        82 -i~~~~~~~p~glavD~~~~~LY~td~-~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~  158 (573)
                       ........+..|++...+..|..+-. ..+.+.+.+++... ...+.........+++.|...+++++-. ....|...
T Consensus       109 ~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-~d~~v~~~  187 (325)
T d1pgua1         109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG-DDGSVVFY  187 (325)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEE-TTTEEEEE
T ss_pred             cccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEee-cccccccc
Confidence             11112234567888766666665543 34567777776433 3333334445678999997777666542 34555555


Q ss_pred             eccCCCcEEEE-ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCc---cceeEEEeeeCCeEEE
Q psy952          159 GMDGSNFTRIL-THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK---VPHVFALTLFEDHIYW  234 (573)
Q Consensus       159 ~ldG~~~~~l~-~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~---~~~p~~ia~~~~~lyw  234 (573)
                      ++.......-. ...........+++.+..+.++++-...+.|...++.-......+.+..   ....++++..++.+++
T Consensus       188 d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~  267 (325)
T d1pgua1         188 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFA  267 (325)
T ss_dssp             ETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEE
T ss_pred             cccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEE
Confidence            44322222211 0011122346788888777888777777888888875443322222210   1123555555555566


Q ss_pred             ecCCCCceEEEeccCCcceEEE
Q psy952          235 TDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       235 td~~~~~I~~~~~~~g~~~~~l  256 (573)
                      +-...+.|..-+..+++..+.+
T Consensus       268 s~s~D~~i~iwd~~~~~~~~~~  289 (325)
T d1pgua1         268 TVGADATIRVWDVTTSKCVQKW  289 (325)
T ss_dssp             EEETTSEEEEEETTTTEEEEEE
T ss_pred             EEeCCCeEEEEECCCCCEEEEE
Confidence            6556667776676666655544

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00023  Score=47.53  Aligned_cols=32  Identities=16%  Similarity=0.115  Sum_probs=26.7

Q ss_pred             Cccccccccccc---Cccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHR---GSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~---~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      |+|+|+|++.|.   ...+|+| ||.||.|..|+++
T Consensus        12 GGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~t   47 (50)
T d1ijqa2          12 GGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRS   47 (50)
T ss_dssp             GGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSC
T ss_pred             CCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCc
Confidence            899999998772   2347999 9999999998875

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00022  Score=46.14  Aligned_cols=39  Identities=28%  Similarity=0.635  Sum_probs=31.6

Q ss_pred             CCccccCCCCCccCCccccCCCCccccCCCCceecCCCcc
Q psy952          345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKA  384 (573)
Q Consensus       345 ~~~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c  384 (573)
                      +++||.. ....|.+.|.|+.++|.|.|+.+|++...++-
T Consensus         2 DidEC~~-~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d~~~   40 (43)
T d1uzka1           2 DVNECLD-PTTCISGNCVNTPGSYICDCPPDFELNPTRVG   40 (43)
T ss_dssp             CCCGGGS-TTSSBTSEEEEETTEEEEECCTTCEECTTSSB
T ss_pred             CccccCC-CCcCcCCEeECCCCCEEEecCCCCEECCCCCc
Confidence            4678876 55667669999999999999999999866543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.15  Score=47.66  Aligned_cols=211  Identities=9%  Similarity=-0.061  Sum_probs=115.7

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cceE--EEcCCCCCcceeEEeec-CCcEEEEeCCCCeEEEEEcCCC
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EKER--VIRHDSHGLEGLAVDWV-GRKLYWLDRHSKQLDVAELDGT  120 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~--i~~~~~~~p~glavD~~-~~~LY~td~~~~~I~~~~ldg~  120 (573)
                      ..+..|+|++.++.|-++......|+.++.... ....  +....-..+..+++.+. ++.+..+-...+.|.+-++...
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            356789999998888777544333333332211 1221  22122245778888764 3455555556677776654321


Q ss_pred             c-eeE--------eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEE
Q psy952          121 N-RKT--------LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLY  191 (573)
Q Consensus       121 ~-~~~--------l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LY  191 (573)
                      . ...        +.........|++++...+|..+..+....+.....+.......+  ...-..-..+++.+.+..+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~  175 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV--SGHSQRINACHLKQSRPMRS  175 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEEC--CSCSSCEEEEEECSSSSCEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceee--eecccccccccccccccceE
Confidence            1 111        111222356888988766776665444445555555533322222  12222336788887777777


Q ss_pred             EEeCCCCeEEEEeCCCCcEEEEEeC--CccceeEEEeee--CCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952          192 WADAHLDYIASVDLDGKHKHIVISG--QKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNGRDYRVLR  257 (573)
Q Consensus       192 w~D~~~~~I~~~~~dG~~~~~l~~~--~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~~g~~~~~l~  257 (573)
                      ++-...+.|...+............  ........|++.  .+.++.+-...+.|...+..+++...++.
T Consensus       176 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~  245 (325)
T d1pgua1         176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE  245 (325)
T ss_dssp             EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECC
T ss_pred             EEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeecccccccccc
Confidence            7666677777776643332222211  112235677764  45677776667778877777777666554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.77  E-value=0.069  Score=48.38  Aligned_cols=180  Identities=10%  Similarity=0.011  Sum_probs=96.1

Q ss_pred             cEEEEEcCCCceeecccC-------CcceEEEEEEcCCCEEEEEECCC-----CeEEEEEcCCCcceEEEcCCCCCccee
Q psy952           26 YVRNMSLDATQYSLVHQD-------LLNVVAMDFHYKENRFYFADVAA-----KTIYRSRVGSTEKERVIRHDSHGLEGL   93 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~-------~~~~~~v~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~i~~~~~~~p~gl   93 (573)
                      .|+++++.+.....+...       ......+++.+..+.|+++....     ..+..++.++...+... .  .....+
T Consensus        69 ~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~  145 (281)
T d1k32a2          69 DLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN-L--GPATHI  145 (281)
T ss_dssp             EEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC-S--CSCSEE
T ss_pred             EEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec-C--Ccccee
Confidence            488888887765544221       12245677888888999886543     24566666654433221 1  122222


Q ss_pred             EEeecCCcE-EEEeCCC----------CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952           94 AVDWVGRKL-YWLDRHS----------KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG  162 (573)
Q Consensus        94 avD~~~~~L-Y~td~~~----------~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG  162 (573)
                      ... .++.+ |......          ....+..........+..........+..+ ...+|..+......|++++++|
T Consensus       146 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~d~~g  223 (281)
T d1k32a2         146 LFA-DGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG-HRIYFITDIDGFGQIYSTDLDG  223 (281)
T ss_dssp             EEE-TTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET-TEEEEEECTTSSCEEEEEETTS
T ss_pred             eec-CCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeec-cccceecccccccceEEEeCCC
Confidence            222 23333 3322111          112222222222222222222333444444 3344444444567899999999


Q ss_pred             CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC
Q psy952          163 SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG  216 (573)
Q Consensus       163 ~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~  216 (573)
                      ...+.|.  ...-..+  ..+.+++++|+|..  .+.|+.+++++...+.|..+
T Consensus       224 ~~~~~lt--~~~~~~~--~~~SpDG~~I~f~~--~~~l~~~d~~~g~~~~i~~~  271 (281)
T d1k32a2         224 KDLRKHT--SFTDYYP--RHLNTDGRRILFSK--GGSIYIFNPDTEKIEKIEIG  271 (281)
T ss_dssp             CSCEECC--CCCSSCE--EEEEESSSCEEEEE--TTEEEEECTTTCCEEECCCC
T ss_pred             CceEEee--cCCCccc--ccCcCCCCEEEEEe--CCEEEEEECCCCCEEEeccC
Confidence            9888765  2322222  34556688998865  35799999998888776543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.75  E-value=0.1  Score=47.58  Aligned_cols=194  Identities=10%  Similarity=0.082  Sum_probs=108.0

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK  123 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~  123 (573)
                      ..+.+|+|.+.++.|+ +-...+.|...++........+.. ....+..|++.+. +.|+.+. ..+.|.+.++.+....
T Consensus        13 ~~V~~l~~s~dg~~l~-s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~~~~~-~d~~v~~~~~~~~~~~   89 (299)
T d1nr0a2          13 KAITALSSSADGKTLF-SADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS-WDDHLKVVPAGGSGVD   89 (299)
T ss_dssp             SCEEEEEECTTSSEEE-EEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEEEEE-TTTEEEEECSSSSSSC
T ss_pred             CCcEEEEECCCCCEEE-EEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc-ceeeccc-ceeeEEEeccCCcccc
Confidence            4478999998655554 444567888889875443333322 2345677888764 4565554 4567888777654432


Q ss_pred             Eec----cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe
Q psy952          124 TLK----TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY  199 (573)
Q Consensus       124 ~l~----~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~  199 (573)
                      ...    .....+..+++.+....++.+..   ..|...+.. . ...+.    ....+..+++.+.+..|+... ..+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~---~~i~~~~~~-~-~~~~~----~~~~~~~~~~s~~~~~l~~g~-~dg~  159 (299)
T d1nr0a2          90 SSKAVANKLSSQPLGLAVSADGDIAVAACY---KHIAIYSHG-K-LTEVP----ISYNSSCVALSNDKQFVAVGG-QDSK  159 (299)
T ss_dssp             TTSCCEEECSSCEEEEEECTTSSCEEEEES---SEEEEEETT-E-EEEEE----CSSCEEEEEECTTSCEEEEEE-TTSE
T ss_pred             cccccccccccccccccccccccccccccc---ccccccccc-c-ccccc----ccccccccccccccccccccc-cccc
Confidence            211    23445889999997666665542   344444321 1 11111    223456788886666665543 4677


Q ss_pred             EEEEeCCCCcEEEEEeCCccceeEEEeeeC-CeEEEecCCCCceEEEeccCCc
Q psy952          200 IASVDLDGKHKHIVISGQKVPHVFALTLFE-DHIYWTDWNTKSINRADKFNGR  251 (573)
Q Consensus       200 I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~~~~~~~g~  251 (573)
                      |...++.+.....+...........|++.. +.++++-...+.|...+..++.
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~  212 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF  212 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888887765543322211023456777642 3333443345666666654443

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.00027  Score=46.16  Aligned_cols=32  Identities=38%  Similarity=1.159  Sum_probs=27.5

Q ss_pred             ccCCccccCCCCccccCCCCceecCCCccccc
Q psy952          356 QCGHKCVDTLTGYYCECNTGYKLLEDGKACTD  387 (573)
Q Consensus       356 ~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~~~  387 (573)
                      .|.+.|.|+.++|.|.|+.+|++..+++.|.+
T Consensus        13 ~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2          13 TCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             SSSSEEEEETTEEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCCCccCCCCeEEECCCCCeECCCCCCccC
Confidence            57889999999999999999999887765543

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00032  Score=44.89  Aligned_cols=38  Identities=37%  Similarity=0.908  Sum_probs=30.8

Q ss_pred             cccCCCCCccCCccccCCCCccccCCCCceecCCCccc
Q psy952          348 ECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC  385 (573)
Q Consensus       348 ~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~  385 (573)
                      ||.......|.+.|.|..++|.|.|+.+|++..+++.|
T Consensus         2 EC~~~~~~~C~~~C~n~~Gsy~C~C~~Gy~L~~d~~tC   39 (42)
T d1nzia2           2 ECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC   39 (42)
T ss_dssp             TTTC-CCCCSSSEEEEETTEEEEECCTTCEECTTSSCE
T ss_pred             CCCCCCCcCCCCEeecCCCCEEEeCCCCCEECCCCCee
Confidence            56532457899999999999999999999998876544

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00026  Score=44.77  Aligned_cols=36  Identities=33%  Similarity=0.865  Sum_probs=31.0

Q ss_pred             CccccCCCCCccCCccccCCCCccccCCCCceecCCC
Q psy952          346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDG  382 (573)
Q Consensus       346 ~~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~  382 (573)
                      .+||.. ++..|.+.|.|..+++.|.|+.+|++.+++
T Consensus         2 ~neC~~-~nggC~h~C~n~~g~~~C~C~~Gy~L~d~~   37 (40)
T d3bpse1           2 TNECLD-NNGGCSHVCNDLKIGYECLCPDGFQLVAQR   37 (40)
T ss_dssp             SCGGGT-GGGGCSSEEEECSSSEEEECCTTCCEETTT
T ss_pred             cccCCC-CCCCCcCEEEcCCCCEEEECCCCCEECCCC
Confidence            467876 788999999999999999999999997544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.64  E-value=0.23  Score=45.04  Aligned_cols=240  Identities=10%  Similarity=0.017  Sum_probs=130.7

Q ss_pred             CCceeeCCCCCCEEEEEe-cccEEEEEcCCCceeeccc--CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce--
Q psy952            6 ESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQ--DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE--   80 (573)
Q Consensus         6 g~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~--~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--   80 (573)
                      ..+|.+......+|+-+. ...|+..++..........  ....+.+|+|.+. +.++.+. ..+.|..+++.+....  
T Consensus        14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~~~~~-~d~~v~~~~~~~~~~~~~   91 (299)
T d1nr0a2          14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS-WDDHLKVVPAGGSGVDSS   91 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTT-SCEEEEE-TTTEEEEECSSSSSSCTT
T ss_pred             CcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecc-ceeeccc-ceeeEEEeccCCcccccc
Confidence            345666543334555443 4678888887654333332  2345789999874 5566554 4567777777654221  


Q ss_pred             -EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952           81 -RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIG  159 (573)
Q Consensus        81 -~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~  159 (573)
                       .+.......+..+++.+.++.++.+..  +.|.+.+... ....  .....+..+++.|...+|+...  ....|...+
T Consensus        92 ~~~~~~~~~~~~~~~~s~~g~~~~~~~~--~~i~~~~~~~-~~~~--~~~~~~~~~~~s~~~~~l~~g~--~dg~i~~~d  164 (299)
T d1nr0a2          92 KAVANKLSSQPLGLAVSADGDIAVAACY--KHIAIYSHGK-LTEV--PISYNSSCVALSNDKQFVAVGG--QDSKVHVYK  164 (299)
T ss_dssp             SCCEEECSSCEEEEEECTTSSCEEEEES--SEEEEEETTE-EEEE--ECSSCEEEEEECTTSCEEEEEE--TTSEEEEEE
T ss_pred             cccccccccccccccccccccccccccc--cccccccccc-cccc--cccccccccccccccccccccc--ccccccccc
Confidence             111112346778888766665555543  4565555321 1111  1223467889999666666544  356777777


Q ss_pred             ccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC--CccceeEEEeee-CCeEEEec
Q psy952          160 MDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG--QKVPHVFALTLF-EDHIYWTD  236 (573)
Q Consensus       160 ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~--~~~~~p~~ia~~-~~~lywtd  236 (573)
                      +.+.....+.. ...-.....|++++.+..|+.+. ..+.|...++...........  .......+|++. .+.++++-
T Consensus       165 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sg  242 (299)
T d1nr0a2         165 LSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATD-QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG  242 (299)
T ss_dssp             EETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEE-TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccc-ccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccceEEE
Confidence            76554332221 12223457899998777766654 456777777654333211111  001234667763 44555554


Q ss_pred             CCCCceEEEeccCCcceEEE
Q psy952          237 WNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       237 ~~~~~I~~~~~~~g~~~~~l  256 (573)
                      ...+.|..-+..++....++
T Consensus       243 s~dg~i~iwd~~~~~~~~~~  262 (299)
T d1nr0a2         243 SLDNSVIVWNMNKPSDHPII  262 (299)
T ss_dssp             ETTSCEEEEETTCTTSCCEE
T ss_pred             cCCCEEEEEECCCCCcceEE
Confidence            45567766665555544433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.23  Score=44.70  Aligned_cols=245  Identities=10%  Similarity=0.024  Sum_probs=124.0

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCceee-cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSL-VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR   84 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~-~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~   84 (573)
                      .+|.+......+|+-+. ...|+..++....... +......+..+++++....|+.... ...+...+...........
T Consensus        20 I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   98 (317)
T d1vyhc1          20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA-DMTIKLWDFQGFECIRTMH   98 (317)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET-TSCCCEEETTSSCEEECCC
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc-ccccccccccccccccccc
Confidence            35665443345665544 4678888887544332 2223455789999986666665544 3344445544333322222


Q ss_pred             CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952           85 HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS  163 (573)
Q Consensus        85 ~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~  163 (573)
                      ........+.+.+.++.|+.. ...+.+.+.++.... ..++.........+++++...+|+...  ....|...++...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~v~~~~~~~~  175 (317)
T d1vyhc1          99 GHDHNVSSVSIMPNGDHIVSA-SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS--NDQTVRVWVVATK  175 (317)
T ss_dssp             CCSSCEEEEEECSSSSEEEEE-ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTC
T ss_pred             cccccceeeeccCCCceEEee-ccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEe--CCCeEEEEeeccc
Confidence            223455666666655555444 456778888876443 333434455577888888655554443  2344555554433


Q ss_pred             CcEEEEecCCCCCCCceEEEec-------------------cCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEE
Q psy952          164 NFTRILTHEDDIAWPNALTLDY-------------------FTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFA  224 (573)
Q Consensus       164 ~~~~l~~~~~~l~~P~glaiD~-------------------~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~  224 (573)
                      .....+  ...-.....+++.+                   ..+.++.+-...+.|...++........+.+. .....+
T Consensus       176 ~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~~v~~  252 (317)
T d1vyhc1         176 ECKAEL--REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH-DNWVRG  252 (317)
T ss_dssp             CEEEEE--CCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC-SSCEEE
T ss_pred             eeeEEE--ecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC-CCCEEE
Confidence            322222  11111111222211                   12233333344556666666543332222222 234456


Q ss_pred             Eeee-CCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952          225 LTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRN  258 (573)
Q Consensus       225 ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~  258 (573)
                      +++. ++.++++-...+.|...+..+++.+.++..
T Consensus       253 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  287 (317)
T d1vyhc1         253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA  287 (317)
T ss_dssp             EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred             EEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Confidence            6663 344444444556777777777776666644

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.55  E-value=0.00069  Score=45.38  Aligned_cols=29  Identities=17%  Similarity=0.169  Sum_probs=26.3

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ++|+|+|+..+   .+++| |+.||.|..|+++
T Consensus         6 GgC~h~C~~~~---~~~~C~C~~Gy~L~~D~~t   35 (51)
T d1kigl_           6 GGCDQFCREER---SEVRCSCAHGYVLGDDSKS   35 (51)
T ss_dssp             TSSSSCCCEET---TEECCCCCTTEEECTTSSC
T ss_pred             CCcccEeEcCC---CcEEeEcCCCCEECCCCCc
Confidence            78999999887   67999 9999999999886

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00053  Score=43.80  Aligned_cols=29  Identities=10%  Similarity=-0.136  Sum_probs=26.4

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ++|+|+|+..+   ++|+| ||.||.|..|+++
T Consensus         9 ~~C~~~C~n~~---Gsy~C~C~~Gy~L~~d~~t   38 (42)
T d1nzia2           9 VPCSHFCNNFI---GGYFCSCPPEYFLHDDMKN   38 (42)
T ss_dssp             CCSSSEEEEET---TEEEEECCTTCEECTTSSC
T ss_pred             cCCCCEeecCC---CCEEEeCCCCCEECCCCCe
Confidence            68999999999   78999 9999999988875

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0012  Score=42.41  Aligned_cols=34  Identities=35%  Similarity=0.729  Sum_probs=28.0

Q ss_pred             CCccccCCCCCccCCccccCCCCccccCCCCceec
Q psy952          345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLL  379 (573)
Q Consensus       345 ~~~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~  379 (573)
                      +++||.. .+..|...|.|+.|+|.|.|+.+|.+.
T Consensus         4 DidEC~~-~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~   37 (43)
T d1emoa1           4 DMDECKE-PDVCKHGQCINTDGSYRCECPFGYILA   37 (43)
T ss_dssp             CCCSSSS-TTSCSSSCCCCCSSCCCCCCCTTEEES
T ss_pred             ceeccCC-cCCCCCCEeECCCCCeEeECCCCcccC
Confidence            4788876 555565699999999999999999874

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00024  Score=45.91  Aligned_cols=38  Identities=39%  Similarity=0.935  Sum_probs=30.8

Q ss_pred             CCccccCCCCCccCC-ccccCCCCccccCCCCceecCCCc
Q psy952          345 NVDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLEDGK  383 (573)
Q Consensus       345 ~~~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~~~~~  383 (573)
                      +++||.. .+..|.+ .|.|+.|+|.|.|+.+|++..+++
T Consensus         2 DinEC~~-~~~~c~~~~C~Nt~Gsy~C~C~~Gy~l~~~~~   40 (43)
T d1uzka2           2 DIDECQE-LPGLCQGGKCINTFGSFQCRCPTGYYLNEDTR   40 (43)
T ss_dssp             ECCHHHH-CGGGGBTSEEEECSSCEEEECCTTCCBCTTTC
T ss_pred             CcccccC-CCCCcCCCEEECCCCCeEeECCCCCeECcCCC
Confidence            3678876 5566765 899999999999999999876654

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.50  E-value=0.00037  Score=45.48  Aligned_cols=32  Identities=41%  Similarity=1.071  Sum_probs=26.8

Q ss_pred             CccCCccccCCCCccccCCCCceecCCCcccc
Q psy952          355 NQCGHKCVDTLTGYYCECNTGYKLLEDGKACT  386 (573)
Q Consensus       355 ~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~~  386 (573)
                      ..|.+.|.|+.++|.|.|+.+|++..+++.|.
T Consensus        12 ~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~tC~   43 (45)
T d1nt0a3          12 VPCDHYCHNYLGGYYCSCRVGYILHQNKHTCS   43 (45)
T ss_dssp             -CCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             CCCCCEeecCCCCEEEeCCCCCEECCCCCccc
Confidence            45888999999999999999999988776543

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.00064  Score=45.31  Aligned_cols=29  Identities=17%  Similarity=0.020  Sum_probs=26.5

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      |+|+|+|+..+   .+|+| |+.+|.|..|+++
T Consensus         7 GgC~~~C~~~~---g~~~C~C~~Gy~L~~D~~t   36 (50)
T d1autl2           7 GGCTHYCLEEV---GWRRCSCAPGYKLGDDLLQ   36 (50)
T ss_dssp             GGCSSEEEECS---SSEEEECCTTEEECTTSSC
T ss_pred             CCcccEeecCC---CCeEEECCCCCEECCCCCc
Confidence            78999999988   67999 9999999999886

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.45  E-value=0.23  Score=43.06  Aligned_cols=66  Identities=5%  Similarity=0.003  Sum_probs=47.2

Q ss_pred             CCEEEEEe-------cccEEEEEcC--CCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE
Q psy952           16 KPWLIFSN-------KYYVRNMSLD--ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI   83 (573)
Q Consensus        16 ~~~l~~s~-------~~~I~~i~l~--g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~   83 (573)
                      -.|+.|+.       .|.|+...+.  |..+++..+....+..++||  ++.|-++....+....+-++|+....+.
T Consensus        66 ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~  140 (313)
T d2hu7a1          66 VGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELA  140 (313)
T ss_dssp             BSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEE
T ss_pred             cceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeec
Confidence            45777775       4789999998  88777766655668899998  5566666666666666777777665554

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00026  Score=45.44  Aligned_cols=36  Identities=33%  Similarity=0.727  Sum_probs=30.4

Q ss_pred             CccccCCCCCccCC-ccccCCCCccccCCCCceecCCC
Q psy952          346 VDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLEDG  382 (573)
Q Consensus       346 ~~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~~~~  382 (573)
                      ++||.. .+..|.+ .|.|+.++|.|.|+.+|++..++
T Consensus         2 idEC~~-~~~~C~~~~C~Nt~Gsy~C~C~~Gy~l~~d~   38 (42)
T d1lmja2           2 IDECQR-DPLLCRGGVCHNTEGSYRCECPPGHQLSPNI   38 (42)
T ss_dssp             CCHHHH-CSSTTTTSEEEEETTEEEEESCTTSCCCSSS
T ss_pred             ccccCC-CCCCCCCCEeECCCCCeEEeCCCCCeECcCC
Confidence            678876 6677887 89999999999999999986554

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.00093  Score=43.08  Aligned_cols=34  Identities=35%  Similarity=0.956  Sum_probs=29.3

Q ss_pred             CCccccCCCCCccCC-ccccCCCCccccCCCCceec
Q psy952          345 NVDECAKVETNQCGH-KCVDTLTGYYCECNTGYKLL  379 (573)
Q Consensus       345 ~~~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~  379 (573)
                      +++||.. ....|.+ .|.|+.|+|.|.|+.+|+..
T Consensus         2 DidEC~~-~~~~C~~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           2 DIDECRI-SPDLCGRGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCTTTT-CSSTTTTSCEEEETTEEEECCCSSEEEC
T ss_pred             cccccCC-CCCCCCCCEeEcCCCCeEEeCCCCCccC
Confidence            4778877 6677887 89999999999999999875

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.00093  Score=44.68  Aligned_cols=29  Identities=17%  Similarity=0.170  Sum_probs=26.4

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      |+|+|+|+..+   .+++| |+.||.|..|+++
T Consensus         8 GgC~h~C~n~~---g~~~C~C~~Gy~L~~D~~t   37 (51)
T d2p3ua1           8 GDCDQFCHEEQ---NSVVCSCARGYTLADNGKA   37 (51)
T ss_dssp             GGCSSEEEEET---TEEEEECCTTEEECTTSSC
T ss_pred             CCcccEeecCC---CCeEeEcCCCCEECCCCCc
Confidence            78999999988   67999 9999999998876

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0013  Score=41.83  Aligned_cols=29  Identities=10%  Similarity=-0.022  Sum_probs=25.8

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ++|+|+|+..+   ++|+| ||.||.|..|+++
T Consensus         8 ~~C~~~C~n~~---Gsy~C~C~~Gy~L~~d~~~   37 (41)
T d1i0ua2           8 DTCSQLCVNLE---GGYKCQCEEGFQLDPHTKA   37 (41)
T ss_dssp             TSCSSCEECSS---SCCEECCCTTEEECTTTCC
T ss_pred             CCCCCEeECCC---CCEEeECCCCCeECCCCCc
Confidence            67999999998   77999 9999999888764

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.42  Score=42.80  Aligned_cols=159  Identities=10%  Similarity=0.064  Sum_probs=91.0

Q ss_pred             cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952           45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT  124 (573)
Q Consensus        45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~  124 (573)
                      ..+.+|+|++.++. .++-...+.|...++........+......+..|++++.+..|+... ..+.+...+........
T Consensus        18 ~~I~~l~~sp~~~~-l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   95 (317)
T d1vyhc1          18 SPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS-ADMTIKLWDFQGFECIR   95 (317)
T ss_dssp             SCEEEEEECSSSSE-EEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE-TTSCCCEEETTSSCEEE
T ss_pred             CCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc-ccccccccccccccccc
Confidence            45789999986554 44545567898899876554444443445778888887555554444 34455555554433333


Q ss_pred             ec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952          125 LK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV  203 (573)
Q Consensus       125 l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~  203 (573)
                      .. ........+++.+....|+...  ....+...++........+  .........+++++.+..|..+ ...+.|...
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~-~~d~~v~~~  170 (317)
T d1vyhc1          96 TMHGHDHNVSSVSIMPNGDHIVSAS--RDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASC-SNDQTVRVW  170 (317)
T ss_dssp             CCCCCSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEE--ECCSSCEEEEEECTTSSEEEEE-ETTSCEEEE
T ss_pred             ccccccccceeeeccCCCceEEeec--cCcceeEeecccceeeeEE--ccCCCcceeeecccCCCEEEEE-eCCCeEEEE
Confidence            22 3444567788888666665544  2455655565543333323  2333445677777655544443 345666666


Q ss_pred             eCCCCcE
Q psy952          204 DLDGKHK  210 (573)
Q Consensus       204 ~~dG~~~  210 (573)
                      ++.....
T Consensus       171 ~~~~~~~  177 (317)
T d1vyhc1         171 VVATKEC  177 (317)
T ss_dssp             ETTTCCE
T ss_pred             eecccee
Confidence            6654433

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0012  Score=44.51  Aligned_cols=30  Identities=10%  Similarity=-0.069  Sum_probs=25.8

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      |+|+|+|++.+  +..++| |+.+|.|..|+++
T Consensus         7 GGC~h~C~~~~--~~~~~C~C~~Gy~L~~D~~t   37 (53)
T d2bz6l1           7 GGCEQYCSDHT--GTKRSCRCHEGYSLLADGVS   37 (53)
T ss_dssp             GGCSSEEEEET--TTEEEEECCTTEEECTTSSC
T ss_pred             CCCcCEeeeCC--CCCEEeECCCCCEECCCCCc
Confidence            78999999987  235889 9999999988775

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.07  E-value=0.0017  Score=43.35  Aligned_cols=38  Identities=26%  Similarity=0.713  Sum_probs=31.7

Q ss_pred             CCCccCCccccCCCCccccCCCCceecCCCcccccccc
Q psy952          353 ETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDE  390 (573)
Q Consensus       353 ~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~~~~~~  390 (573)
                      ++..|++.|.+..+++.|.|+.+|++..+++.|.++.+
T Consensus         4 ~NGgC~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~   41 (51)
T d1kigl_           4 DNGGCDQFCREERSEVRCSCAHGYVLGDDSKSCVSTER   41 (51)
T ss_dssp             TTTSSSSCCCEETTEECCCCCTTEEECTTSSCEEECSS
T ss_pred             CCCCcccEeEcCCCcEEeEcCCCCEECCCCCccccCCc
Confidence            56889999999999999999999999987765555433

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0018  Score=43.79  Aligned_cols=30  Identities=47%  Similarity=1.212  Sum_probs=25.0

Q ss_pred             ccCCccccCCCCccccCCCCceecCCCccc
Q psy952          356 QCGHKCVDTLTGYYCECNTGYKLLEDGKAC  385 (573)
Q Consensus       356 ~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~  385 (573)
                      .|.+.|.|+.|+|.|.|+.+|++..+++.|
T Consensus        21 ~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~tC   50 (53)
T d1apqa_          21 QCQHLCHNYVGGYFCSCRPGYELQEDRHSC   50 (53)
T ss_dssp             TTSSEEEEETTEEEEECSTTCEECTTSSCE
T ss_pred             CccCEeEcCCCCeEeECCCCCeECCCCCce
Confidence            356679999999999999999998766544

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.77  E-value=0.59  Score=42.17  Aligned_cols=247  Identities=8%  Similarity=-0.021  Sum_probs=123.3

Q ss_pred             CCCceeeCCCCCCEEEEEe-cccEEEEEcCCCce--eec--ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc
Q psy952            5 DESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQY--SLV--HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK   79 (573)
Q Consensus         5 dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~--~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~   79 (573)
                      |+.++.+......+|+.+. .+.|+..+++....  .+.  ......+..|+|.+..+.++++-...+.|...++.....
T Consensus        12 d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~   91 (342)
T d1yfqa_          12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             CCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccc
Confidence            4556665543345676654 46788777754322  221  123345789999887888777777778898888876555


Q ss_pred             eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEec----c--CCCCcceEEEeCCCceEEEEecCCc
Q psy952           80 ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLK----T--AIQDPRGITLHPGIGYVYFSSWNLQ  152 (573)
Q Consensus        80 ~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~----~--~~~~P~~Iavdp~~g~LYwtd~~~~  152 (573)
                      ......................++++-...+.+.+.++.... .....    .  .......+++.+....++...  ..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d  169 (342)
T d1yfqa_          92 FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGM--NN  169 (342)
T ss_dssp             EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEE--ST
T ss_pred             cccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeec--CC
Confidence            444333323333344444455666666666777777653211 11111    1  112234455555445554444  24


Q ss_pred             CeEEEEeccCCCcE--EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc-------EEEEEeC-------
Q psy952          153 AYIGKIGMDGSNFT--RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH-------KHIVISG-------  216 (573)
Q Consensus       153 ~~I~r~~ldG~~~~--~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~-------~~~l~~~-------  216 (573)
                      ..|...++......  .... ..........+..+..+..+.+-...++|....++...       ...+...       
T Consensus       170 ~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
T d1yfqa_         170 SQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT  248 (342)
T ss_dssp             TEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred             CcEEEEecccCcccceeeee-cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCC
Confidence            45665555433211  1110 11122222333334444555555555555555544321       1111110       


Q ss_pred             CccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceE
Q psy952          217 QKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYR  254 (573)
Q Consensus       217 ~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~  254 (573)
                      .......+|++. .+.++.|-...+.|..-+..+++...
T Consensus       249 ~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~  287 (342)
T d1yfqa_         249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK  287 (342)
T ss_dssp             SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred             cccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence            001123466664 34555665566777766655554433

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0015  Score=41.11  Aligned_cols=27  Identities=11%  Similarity=0.001  Sum_probs=23.5

Q ss_pred             CcccccccccccCccceee-eccceeecCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNK  304 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~  304 (573)
                      ++|+|+|+..+   .+|+| |+.+|.|. |++
T Consensus        10 ggC~h~C~n~~---g~~~C~C~~Gy~L~-d~~   37 (40)
T d3bpse1          10 GGCSHVCNDLK---IGYECLCPDGFQLV-AQR   37 (40)
T ss_dssp             GGCSSEEEECS---SSEEEECCTTCCEE-TTT
T ss_pred             CCCcCEEEcCC---CCEEEECCCCCEEC-CCC
Confidence            78999999998   67999 99999995 544

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0024  Score=43.61  Aligned_cols=30  Identities=13%  Similarity=0.112  Sum_probs=26.0

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      |+|+|+|++.+  ...++| |+.||.|..|+++
T Consensus         8 GgC~h~C~~~~--~~~~~C~C~~Gy~L~~D~~t   38 (57)
T d1rfnb_           8 GRCEQFCKNSA--DNKVVCSCTEGYRLAENQKS   38 (57)
T ss_dssp             GGCSSEEEECT--TSCEEEECCTTEEECTTSSS
T ss_pred             CCcccEeeeCC--CCCeEeECCCCCEECCCCCc
Confidence            89999999987  246899 9999999988875

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.86  Score=44.92  Aligned_cols=145  Identities=11%  Similarity=0.068  Sum_probs=71.2

Q ss_pred             eEEEEEcCCCceeEecc----CCCC--cceEEEeCCCceEEEE---ecCCcCeEEEEeccC-------CCcEEEEecCCC
Q psy952          111 QLDVAELDGTNRKTLKT----AIQD--PRGITLHPGIGYVYFS---SWNLQAYIGKIGMDG-------SNFTRILTHEDD  174 (573)
Q Consensus       111 ~I~~~~ldg~~~~~l~~----~~~~--P~~Iavdp~~g~LYwt---d~~~~~~I~r~~ldG-------~~~~~l~~~~~~  174 (573)
                      .|.+++......+++..    ....  .....+.+..+.++|.   +.+....++.+.+.+       ...+.|.  ...
T Consensus       281 ~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT--~G~  358 (465)
T d1xfda1         281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSIT--SGD  358 (465)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSC--CSS
T ss_pred             eEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEec--cCC
Confidence            45666666555555542    1111  2345677766655443   323345677665532       2222221  111


Q ss_pred             CCCCceEEEeccCCeEEEEeCC----CCeEEEEeCCCCcEEEEEeCCc--cceeEEEee--eCCeEEEe--cCCCCceEE
Q psy952          175 IAWPNALTLDYFTERLYWADAH----LDYIASVDLDGKHKHIVISGQK--VPHVFALTL--FEDHIYWT--DWNTKSINR  244 (573)
Q Consensus       175 l~~P~glaiD~~~~~LYw~D~~----~~~I~~~~~dG~~~~~l~~~~~--~~~p~~ia~--~~~~lywt--d~~~~~I~~  244 (573)
                      ...-.-+++|..++.||++-..    ...|++++++|+....++....  ...-..+++  .+.++..+  ....-.+..
T Consensus       359 w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~  438 (465)
T d1xfda1         359 WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTV  438 (465)
T ss_dssp             SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred             ceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEE
Confidence            1111235799999999998543    4469999999976544333110  111234444  33333322  222233444


Q ss_pred             EeccCCcceEEEc
Q psy952          245 ADKFNGRDYRVLR  257 (573)
Q Consensus       245 ~~~~~g~~~~~l~  257 (573)
                      ++..+|+.+.+|.
T Consensus       439 ~~~~~~~~~~~Le  451 (465)
T d1xfda1         439 HNTTDKKKMFDLE  451 (465)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             EECCCCCEEEEEc
Confidence            5555666665553

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0028  Score=42.05  Aligned_cols=35  Identities=31%  Similarity=0.736  Sum_probs=30.0

Q ss_pred             CCCccCCccccCCCCccccCCCCceecCCCccccc
Q psy952          353 ETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTD  387 (573)
Q Consensus       353 ~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~~~  387 (573)
                      ++..|.+.|.++.+++.|+|+.+|++..+++.|..
T Consensus         5 ~NGgC~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~   39 (50)
T d1autl2           5 DNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHP   39 (50)
T ss_dssp             GGGGCSSEEEECSSSEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCcccEeecCCCCeEEECCCCCEECCCCCcccc
Confidence            56789999999999999999999999887765543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.52  E-value=0.84  Score=41.40  Aligned_cols=141  Identities=6%  Similarity=-0.014  Sum_probs=82.2

Q ss_pred             eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec
Q psy952           47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK  126 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~  126 (573)
                      +..+.+. ....++++-...+.|..+++........+......+..|++.+.++ ++++-...+.|.+.++.........
T Consensus       187 ~~~~~~~-~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~-~l~s~s~d~~i~~~~~~~~~~~~~~  264 (340)
T d1tbga_         187 VMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN-AFATGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             EEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             Eeeeccc-cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeeccccccccc
Confidence            3344444 4556666666677888888765443333333345678899987554 4455456778999998765544333


Q ss_pred             c---CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952          127 T---AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       127 ~---~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~  193 (573)
                      .   .......++++|...+|+...  ..+.|...++........+  ...-.....|++.+.+..|+-+
T Consensus       265 ~~~~~~~~i~~~~~s~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~--~~H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         265 SHDNIICGITSVSFSKSGRLLLAGY--DDFNCNVWDALKADRAGVL--AGHDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             CCTTCCSCEEEEEECSSSCEEEEEE--TTSCEEEEETTTCCEEEEE--CCCSSCEEEEEECTTSSCEEEE
T ss_pred             ccccccCceEEEEECCCCCEEEEEE--CCCEEEEEECCCCcEEEEE--cCCCCCEEEEEEeCCCCEEEEE
Confidence            2   333467899999666665544  3456777776543333333  2222334677777655555443

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.42  E-value=0.0034  Score=40.69  Aligned_cols=29  Identities=7%  Similarity=-0.199  Sum_probs=25.2

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ..|+|+|++.+   ++|+| |+.||.|..|+++
T Consensus        12 ~~C~~~C~Nt~---gsy~C~C~~Gy~L~~d~~t   41 (45)
T d1nt0a3          12 VPCDHYCHNYL---GGYYCSCRVGYILHQNKHT   41 (45)
T ss_dssp             -CCSSEEEEET---TEEEEECCTTEEECTTSSC
T ss_pred             CCCCCEeecCC---CCEEEeCCCCCEECCCCCc
Confidence            45999999998   67999 9999999988775

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0045  Score=40.11  Aligned_cols=29  Identities=10%  Similarity=-0.075  Sum_probs=25.8

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      .+|+|+|+..+   ++|+| |+.||.|..|+++
T Consensus        12 ~~C~~~C~Nt~---Gsy~C~C~~Gy~l~~d~~t   41 (45)
T d1szba2          12 PTCDHHCHNHL---GGFYCSCRAGYVLHRNKRT   41 (45)
T ss_dssp             CSSSSEEEEET---TEEEEECCTTEEECTTSSC
T ss_pred             CCCCCCCccCC---CCeEEECCCCCeECCCCCC
Confidence            46999999998   78999 9999999988775

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=95.24  E-value=1.1  Score=43.18  Aligned_cols=164  Identities=15%  Similarity=0.130  Sum_probs=92.7

Q ss_pred             CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC------CCCCcceeEEeecC-CcEEEEeCC-----CC
Q psy952           43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH------DSHGLEGLAVDWVG-RKLYWLDRH-----SK  110 (573)
Q Consensus        43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~------~~~~p~glavD~~~-~~LY~td~~-----~~  110 (573)
                      ..+.+.+|++|+.+..+.++-...+-|+|..-.|...+.+...      ....+.+||||+.+ +.||+.-..     ..
T Consensus        10 ~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~   89 (427)
T d2ebsa1          10 GGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   89 (427)
T ss_dssp             BCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCc
Confidence            4566889999998766665555556688876545544443211      12346689999866 466765321     23


Q ss_pred             eEEEEEcCCCceeEecc---------CCCCcceEEEeCCCc-eEEEEecCCcCeEEEEeccCCCcEEEEecCCCCC---C
Q psy952          111 QLDVAELDGTNRKTLKT---------AIQDPRGITLHPGIG-YVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIA---W  177 (573)
Q Consensus       111 ~I~~~~ldg~~~~~l~~---------~~~~P~~Iavdp~~g-~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~---~  177 (573)
                      .|++..-.|..-+.+..         .......|+|+|.+. .||++.  ....|+|..=.|..-+.+........   .
T Consensus        90 gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~--~~~gl~~S~D~G~tW~~~~~~~~~~~~~~~  167 (427)
T d2ebsa1          90 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT--RTEGIWKSSDRAKTWTNVTSIPDAFTNGIG  167 (427)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC--SSSCEEEESSTTSSCEECTTSSCCCCSSSC
T ss_pred             cEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc--cccceeeecCCCceeeecccCcccccCCcc
Confidence            56665444554343321         112345799999754 566654  23457776545554433321011111   1


Q ss_pred             CceEEEecc-CCeEEEEeCCCCeEEEEeCCCC
Q psy952          178 PNALTLDYF-TERLYWADAHLDYIASVDLDGK  208 (573)
Q Consensus       178 P~glaiD~~-~~~LYw~D~~~~~I~~~~~dG~  208 (573)
                      ...|++|+. .+.||.+......|++..-.|.
T Consensus       168 ~~~i~~~p~~~~~~y~~~~~~~giy~S~DgG~  199 (427)
T d2ebsa1         168 YTSVIFDPERNGTIYASATAPQGMYVTHDGGV  199 (427)
T ss_dssp             EEEEEECTTSTTCEEEEESSTTCEEEESSTTS
T ss_pred             ceEEEecccccceeeeeeeecccceeccCCCC
Confidence            235788875 4678887766667877554443

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0013  Score=41.28  Aligned_cols=32  Identities=25%  Similarity=0.614  Sum_probs=27.6

Q ss_pred             CccccCCCCCccCCccccCCCCccccCCCCceec
Q psy952          346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLL  379 (573)
Q Consensus       346 ~~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~  379 (573)
                      ++||..  ...|.+.|.|..++|.|.|+++|++.
T Consensus         2 idEC~~--~~~C~~~C~N~~Gsy~C~C~~Gy~l~   33 (40)
T d1dx5i3           2 IDECEN--GGFCSGVCHNLPGTFECICGPDSALA   33 (40)
T ss_dssp             CCHHHH--CSSCSSEEEECSSSEEEEECSSSSCE
T ss_pred             ccccCC--CcCccCEeeCCCCCeEeECCCCCeeC
Confidence            567864  36798999999999999999999875

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0032  Score=41.96  Aligned_cols=37  Identities=32%  Similarity=0.916  Sum_probs=30.7

Q ss_pred             ccCCCCCccCCccccCCCCccccCCCCceecCCCcccc
Q psy952          349 CAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACT  386 (573)
Q Consensus       349 C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~c~~  386 (573)
                      |.. ++..|.+.|.+..+++.|.|+.+|++..+++.|.
T Consensus         3 C~~-~NGgC~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~   39 (51)
T d2p3ua1           3 CSL-DNGDCDQFCHEEQNSVVCSCARGYTLADNGKACI   39 (51)
T ss_dssp             GGT-GGGGCSSEEEEETTEEEEECCTTEEECTTSSCEE
T ss_pred             cCC-CCCCcccEeecCCCCeEeEcCCCCEECCCCCccc
Confidence            444 5678999999999999999999999988765444

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.07  E-value=1.2  Score=40.37  Aligned_cols=253  Identities=9%  Similarity=-0.025  Sum_probs=124.0

Q ss_pred             CceeeCCCCCCEEEEEe-cccEEEEEcCCCceee-cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc--eEE
Q psy952            7 STCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSL-VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK--ERV   82 (573)
Q Consensus         7 ~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~-~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~i   82 (573)
                      .+|.+......+|+-+. .+.|+..++....... +......+..|+|.+.+..|+.+.. .+.|...+......  ...
T Consensus        58 I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-d~~i~~~~~~~~~~~~~~~  136 (340)
T d1tbga_          58 IYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-DNICSIYNLKTREGNVRVS  136 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEET-TCCEEEEESSSSCSCCCEE
T ss_pred             EEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecc-cceeecccccccccccccc
Confidence            45665543445665554 4678888887554322 2223445789999987776666554 45566666543211  111


Q ss_pred             -EcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952           83 -IRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM  160 (573)
Q Consensus        83 -~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l  160 (573)
                       ...+...............+.... ....+.............. ........+...+ .+.++.+-. ....|...++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~d~~v~i~d~  213 (340)
T d1tbga_         137 RELAGHTGYLSCCRFLDDNQIVTSS-GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP-DTRLFVSGA-CDASAKLWDV  213 (340)
T ss_dssp             EEECCCSSCEEEEEEEETTEEEEEE-TTTEEEEEETTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEE-TTTEEEEEET
T ss_pred             eeccccccccccccccccccccccc-ccccccccccccccccccccccceeEeeecccc-ccceeEEee-cCceEEEEEC
Confidence             111111222222222233333333 2333333333333222222 2222234444444 334444432 2445655555


Q ss_pred             cCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCC-ccceeEEEeee-CCeEEEecCC
Q psy952          161 DGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLF-EDHIYWTDWN  238 (573)
Q Consensus       161 dG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~-~~~~p~~ia~~-~~~lywtd~~  238 (573)
                      ........+  ...-.....|++++.+..|+. -...+.|...++............ .......+++. .+.++++-..
T Consensus       214 ~~~~~~~~~--~~h~~~i~~v~~~p~~~~l~s-~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~  290 (340)
T d1tbga_         214 REGMCRQTF--TGHESDINAICFFPNGNAFAT-GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD  290 (340)
T ss_dssp             TTTEEEEEE--CCCSSCEEEEEECTTSSEEEE-EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEET
T ss_pred             CCCcEEEEE--eCCCCCeEEEEECCCCCEEEE-EeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEEC
Confidence            433222222  222334468888875555544 445678888888765554444321 12234566664 3445555555


Q ss_pred             CCceEEEeccCCcceEEEcccCCCceee
Q psy952          239 TKSINRADKFNGRDYRVLRNTTHRPYDI  266 (573)
Q Consensus       239 ~~~I~~~~~~~g~~~~~l~~~~~~p~~i  266 (573)
                      .+.|...+..+++...++.........|
T Consensus       291 dg~i~iwd~~~~~~~~~~~~H~~~V~~l  318 (340)
T d1tbga_         291 DFNCNVWDALKADRAGVLAGHDNRVSCL  318 (340)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEE
T ss_pred             CCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence            6778877877777666665433333333

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.0097  Score=39.30  Aligned_cols=36  Identities=19%  Similarity=0.494  Sum_probs=28.9

Q ss_pred             ccccCCCCCccCCccc------cCCCCccccCCCCceecCCCc
Q psy952          347 DECAKVETNQCGHKCV------DTLTGYYCECNTGYKLLEDGK  383 (573)
Q Consensus       347 ~~C~~~~~~~C~~~C~------~~~~~~~C~C~~~f~c~~~~~  383 (573)
                      ++|.. ++..|++.|.      +..+.+.|.|+.+|++..+++
T Consensus         5 neC~~-~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~   46 (50)
T d1ijqa2           5 ERTTL-SNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMR   46 (50)
T ss_dssp             SSSSS-GGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSS
T ss_pred             cccCC-CCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCC
Confidence            35655 6788999994      567899999999999998664

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.00  E-value=1.6  Score=42.31  Aligned_cols=52  Identities=10%  Similarity=-0.024  Sum_probs=34.2

Q ss_pred             cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc
Q psy952           26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK   79 (573)
Q Consensus        26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~   79 (573)
                      .++.+++.+.+...+...-.....+.|.+.+++|.++.  .+.|+.+++.++..
T Consensus        93 ~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g~~  144 (470)
T d2bgra1          93 SYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPS  144 (470)
T ss_dssp             EEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCC
T ss_pred             eEEEEECCCCcccccccCCccccccccccCcceeeEee--cccceEEECCCCce
Confidence            56678888776554444445567778888888877753  34577777665543

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.012  Score=39.49  Aligned_cols=29  Identities=7%  Similarity=-0.163  Sum_probs=25.5

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ..|+|+|++.+   ++|.| |+.||.|..++++
T Consensus        20 ~~c~~~C~Nt~---GsY~C~C~~Gy~l~~d~~t   49 (53)
T d1apqa_          20 PQCQHLCHNYV---GGYFCSCRPGYELQEDRHS   49 (53)
T ss_dssp             CTTSSEEEEET---TEEEEECSTTCEECTTSSC
T ss_pred             CCccCEeEcCC---CCeEeECCCCCeECCCCCc
Confidence            45899999999   78999 9999999888765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=3.6  Score=40.09  Aligned_cols=122  Identities=11%  Similarity=0.101  Sum_probs=67.7

Q ss_pred             eEEEEEEcCCCEEEEE--ECCCC--eEEEEEcCCCcceEEEcCC----CC-CcceeEEeecCCcEEEEe----CCCCeEE
Q psy952           47 VVAMDFHYKENRFYFA--DVAAK--TIYRSRVGSTEKERVIRHD----SH-GLEGLAVDWVGRKLYWLD----RHSKQLD  113 (573)
Q Consensus        47 ~~~v~~d~~~~~ly~~--d~~~~--~I~~~~~~g~~~~~i~~~~----~~-~p~glavD~~~~~LY~td----~~~~~I~  113 (573)
                      +..+.|-+ ++++++.  +...+  .|..++..++...+++...    +. ......+.+.++.++|..    .+.+.+.
T Consensus       257 ~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly  335 (465)
T d1xfda1         257 ITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFY  335 (465)
T ss_dssp             EEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEE
T ss_pred             eeeeEEcC-CCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceE
Confidence            34556654 4555543  43332  5677777666555554321    11 112345556666665532    3345666


Q ss_pred             EEEcC-------CCceeEeccCCCCcce-EEEeCCCceEEEEecCC---cCeEEEEeccCCCcEEEE
Q psy952          114 VAELD-------GTNRKTLKTAIQDPRG-ITLHPGIGYVYFSSWNL---QAYIGKIGMDGSNFTRIL  169 (573)
Q Consensus       114 ~~~ld-------g~~~~~l~~~~~~P~~-Iavdp~~g~LYwtd~~~---~~~I~r~~ldG~~~~~l~  169 (573)
                      .+.+.       |...+.|-.+-..... +++|..++.||++-...   ..+|++++++|.....++
T Consensus       336 ~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~l  402 (465)
T d1xfda1         336 HITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCL  402 (465)
T ss_dssp             EEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCS
T ss_pred             EEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceee
Confidence            66543       2222333333333344 46999999999986543   447999999998755544

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.016  Score=36.70  Aligned_cols=31  Identities=48%  Similarity=1.146  Sum_probs=26.0

Q ss_pred             CccccCCCCCccCC--ccccCCCCccccCCCCce
Q psy952          346 VDECAKVETNQCGH--KCVDTLTGYYCECNTGYK  377 (573)
Q Consensus       346 ~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~  377 (573)
                      +++|.. ...+|.+  .|.+..++|.|.|+.+|.
T Consensus         3 ideC~~-~~~pC~n~g~C~n~~g~y~C~C~~G~~   35 (42)
T d2vj3a1           3 VDECSL-GANPCEHAGKCINTLGSFECQCLQGYT   35 (42)
T ss_dssp             CCTTTS-SSCSSSTTCEEEECSSSEEEECCTTEE
T ss_pred             CccccC-CCCCCCCCcEeECCCCCEEeECCCCCc
Confidence            567765 4577888  899999999999999996

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.019  Score=39.00  Aligned_cols=38  Identities=29%  Similarity=0.821  Sum_probs=29.7

Q ss_pred             ccCCCCCccCCccccCCC-CccccCCCCceecCCCccccc
Q psy952          349 CAKVETNQCGHKCVDTLT-GYYCECNTGYKLLEDGKACTD  387 (573)
Q Consensus       349 C~~~~~~~C~~~C~~~~~-~~~C~C~~~f~c~~~~~c~~~  387 (573)
                      |.. ++..|.+.|.+..+ .+.|.|+.+|++..+++.|..
T Consensus         3 C~~-~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~   41 (57)
T d1rfnb_           3 CNI-KNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP   41 (57)
T ss_dssp             TTG-GGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEE
T ss_pred             cCC-CCCCcccEeeeCCCCCeEeECCCCCEECCCCCcccc
Confidence            444 66889999998865 789999999999877654443

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.38  E-value=0.032  Score=34.69  Aligned_cols=25  Identities=12%  Similarity=-0.105  Sum_probs=22.0

Q ss_pred             CcccccccccccCccceee-eccceeecC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGS  301 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~  301 (573)
                      ++|+|+|+..+   ++|+| |+.+|.+..
T Consensus         9 ~~C~~~C~N~~---Gsy~C~C~~Gy~l~g   34 (40)
T d1dx5i3           9 GFCSGVCHNLP---GTFECICGPDSALAG   34 (40)
T ss_dssp             SSCSSEEEECS---SSEEEEECSSSSCEE
T ss_pred             cCccCEeeCCC---CCeEeECCCCCeeCC
Confidence            57999999998   78999 999999853

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.27  E-value=5.4  Score=36.58  Aligned_cols=205  Identities=10%  Similarity=0.069  Sum_probs=108.8

Q ss_pred             CEEEEEe-cccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952           17 PWLIFSN-KYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA   94 (573)
Q Consensus        17 ~~l~~s~-~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla   94 (573)
                      .+|+.+. ...|+..++.......... ....+..+++.+....++.+. ..+.|...++.......... .......++
T Consensus       134 ~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~  211 (388)
T d1erja_         134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS-GDRTVRIWDLRTGQCSLTLS-IEDGVTTVA  211 (388)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-TTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred             Ccceecccccccccccccccccccccccccccccccccccccccccccc-cceeeeeeeccccccccccc-ccccccccc
Confidence            3554444 3567777776544332222 344577889987766666654 45678888877544333222 223455566


Q ss_pred             EeecCCcEEEEeCCCCeEEEEEcCCCc-eeEecc-------CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952           95 VDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKT-------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT  166 (573)
Q Consensus        95 vD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~-------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~  166 (573)
                      +.+..++++++-...+.|.+.++.... ...+..       .......|+++|...+|+...  ....|...++......
T Consensus       212 ~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~  289 (388)
T d1erja_         212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS--LDRSVKLWNLQNANNK  289 (388)
T ss_dssp             ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEEC------
T ss_pred             ccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE--CCCcEEEEeccCCccc
Confidence            666566666666667788888876433 333321       123367899999665555443  2445555554322211


Q ss_pred             EEE----------ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee
Q psy952          167 RIL----------THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL  227 (573)
Q Consensus       167 ~l~----------~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~  227 (573)
                      ...          .....-.....+++.+.+..|+.+. ..+.|...++........+.+. .....+|++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~-~dg~i~vwd~~~~~~~~~l~~H-~~~V~~~~~  358 (388)
T d1erja_         290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDRGVLFWDKKSGNPLLMLQGH-RNSVISVAV  358 (388)
T ss_dssp             ---------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTSEEEEEETTTCCEEEEEECC-SSCEEEEEE
T ss_pred             cccccccccceeeecccccceEEEEEECCCCCEEEEEe-CCCEEEEEECCCCcEEEEEeCC-CCCEEEEEE
Confidence            100          0011122345788887666665544 4577888887644433333332 234455554

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.25  E-value=0.051  Score=34.47  Aligned_cols=29  Identities=3%  Similarity=-0.146  Sum_probs=24.3

Q ss_pred             CcccccccccccCccceee-eccceeecCCCCC
Q psy952          274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE  305 (573)
Q Consensus       274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~  305 (573)
                      ..|.+.|+..+   ++|+| |+.||.+..+++.
T Consensus        11 ~~c~~~C~Nt~---G~y~C~C~~Gy~l~~d~~~   40 (43)
T d1uzka1          11 TCISGNCVNTP---GSYICDCPPDFELNPTRVG   40 (43)
T ss_dssp             SSBTSEEEEET---TEEEEECCTTCEECTTSSB
T ss_pred             cCcCCEeECCC---CCEEEecCCCCEECCCCCc
Confidence            45788999998   78999 9999999877653

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=5  Score=34.54  Aligned_cols=73  Identities=11%  Similarity=0.157  Sum_probs=44.3

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT  124 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~  124 (573)
                      .+..|++|  + .+.++-...+.|...+++.......+......+..|++|   +++.++-...+.|.+.++.......
T Consensus        17 ~V~c~~~d--~-~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~---~~~l~s~s~D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          17 GVYCLQYD--D-QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             CEEEEECC--S-SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             CEEEEEEc--C-CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecc---cceeecccccccccccccccccccc
Confidence            35566654  3 445555667889888987655444444333456566553   4455565567788888877655443

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.82  E-value=0.082  Score=35.10  Aligned_cols=33  Identities=39%  Similarity=0.911  Sum_probs=26.8

Q ss_pred             CCCccCCccccCCC-CccccCCCCceecCCCccc
Q psy952          353 ETNQCGHKCVDTLT-GYYCECNTGYKLLEDGKAC  385 (573)
Q Consensus       353 ~~~~C~~~C~~~~~-~~~C~C~~~f~c~~~~~c~  385 (573)
                      ++..|.+.|.+..+ .+.|.|+.+|.+..+++.|
T Consensus         5 ~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC   38 (53)
T d2bz6l1           5 ENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSC   38 (53)
T ss_dssp             GGGGCSSEEEEETTTEEEEECCTTEEECTTSSCE
T ss_pred             CCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcc
Confidence            56789999988876 4789999999998776533

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=89.41  E-value=7.4  Score=36.89  Aligned_cols=168  Identities=13%  Similarity=0.049  Sum_probs=89.5

Q ss_pred             CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-------CCCCcceEEEeCCC-ceEEEEecC----CcCe
Q psy952           87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-------AIQDPRGITLHPGI-GYVYFSSWN----LQAY  154 (573)
Q Consensus        87 ~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-------~~~~P~~Iavdp~~-g~LYwtd~~----~~~~  154 (573)
                      -..+.+||||+.+.++.++-...+-|++..-.|..=+.+..       ......+|||||.+ ..||+....    ....
T Consensus        11 gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~g   90 (427)
T d2ebsa1          11 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAA   90 (427)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCcc
Confidence            35788999998766554444444568776655655454432       12235689999976 456655321    1245


Q ss_pred             EEEEeccCCCcEEEEecCC------CCCCCceEEEeccCC-eEEEEeCCCCeEEEEeCCCCcEEEEEeC-Cc---cceeE
Q psy952          155 IGKIGMDGSNFTRILTHED------DIAWPNALTLDYFTE-RLYWADAHLDYIASVDLDGKHKHIVISG-QK---VPHVF  223 (573)
Q Consensus       155 I~r~~ldG~~~~~l~~~~~------~l~~P~glaiD~~~~-~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~~---~~~p~  223 (573)
                      |++..=.|..-+.+.....      .......|+|||.+. .||++ ...+.|++..-.|..-+.+... ..   .....
T Consensus        91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~-~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~~~~  169 (427)
T d2ebsa1          91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMG-TRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYT  169 (427)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEE-CSSSCEEEESSTTSSCEECTTSSCCCCSSSCEE
T ss_pred             EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCccccc-ccccceeeecCCCceeeecccCcccccCCccce
Confidence            6666444544333331000      111224699998765 45554 3445577654444433332211 00   11233


Q ss_pred             EEeee---CCeEEEecCCCCceEEEeccCCcceEEE
Q psy952          224 ALTLF---EDHIYWTDWNTKSINRADKFNGRDYRVL  256 (573)
Q Consensus       224 ~ia~~---~~~lywtd~~~~~I~~~~~~~g~~~~~l  256 (573)
                      .|++.   .+.||.+-.....|++.. ..|+.-+.+
T Consensus       170 ~i~~~p~~~~~~y~~~~~~~giy~S~-DgG~TW~~v  204 (427)
T d2ebsa1         170 SVIFDPERNGTIYASATAPQGMYVTH-DGGVSWEPV  204 (427)
T ss_dssp             EEEECTTSTTCEEEEESSTTCEEEES-STTSSCEEC
T ss_pred             EEEecccccceeeeeeeecccceecc-CCCCCceEC
Confidence            45552   467888776667787653 445554444

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.34  E-value=4  Score=41.00  Aligned_cols=51  Identities=14%  Similarity=0.099  Sum_probs=29.5

Q ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC
Q psy952           49 AMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR  107 (573)
Q Consensus        49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~  107 (573)
                      .+++|+..+.+||.-.....     ..+..+   ....+....=+|+|..++.+.|...
T Consensus       239 ~~s~D~~~g~~y~~tg~~~p-----~~~~~r---~g~n~~s~svvAld~~TG~~~W~~q  289 (571)
T d2ad6a1         239 WYAYDPKLNLFYYGSGNPAP-----WNETMR---PGDNKWTMTIWGRDLDTGMAKWGYQ  289 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSC-----SCGGGS---CSCCTTTTEEEEEETTTCCEEEEEE
T ss_pred             ccccchhcCeeeeecccccC-----cccccc---ccccccccceeeeeccchhheeccc
Confidence            46899999999986543221     011110   0111223445788888899988754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.07  E-value=6.7  Score=34.24  Aligned_cols=109  Identities=11%  Similarity=0.005  Sum_probs=60.5

Q ss_pred             ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEe
Q psy952           46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL  125 (573)
Q Consensus        46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l  125 (573)
                      .|..+++.. .+.++.+. ..+.|..+..........+..   .....++.+..+.+.++-...+.|.+.++........
T Consensus        82 ~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~  156 (287)
T d1pgua2          82 QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVRL---NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFD  156 (287)
T ss_dssp             CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEEC---SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEE
T ss_pred             ceeeeeecc-CCceEEEe-ecccceeeeccceeeeeeccc---cceeeeeeccCcceeeeccccceeeeeeccccceeee
Confidence            355566553 44444443 334566666544333222221   2234556655667777766666788888765443333


Q ss_pred             c-c-CCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952          126 K-T-AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD  161 (573)
Q Consensus       126 ~-~-~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld  161 (573)
                      + . ....+..|+++|...+|+....  ...|...++.
T Consensus       157 ~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~i~i~d~~  192 (287)
T d1pgua2         157 LKTPLRAKPSYISISPSETYIAAGDV--MGKILLYDLQ  192 (287)
T ss_dssp             CSSCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETT
T ss_pred             eeeccCCceeEEEeccCccccccccc--cccccceeec
Confidence            3 2 2334789999997777766652  4566666654

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.04  E-value=0.053  Score=33.10  Aligned_cols=29  Identities=34%  Similarity=0.903  Sum_probs=23.9

Q ss_pred             CccccCCCCCccCC--ccccCCCCccccCCCCce
Q psy952          346 VDECAKVETNQCGH--KCVDTLTGYYCECNTGYK  377 (573)
Q Consensus       346 ~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~  377 (573)
                      +++|.+   .+|.+  .|.+..++|.|.|+.+|.
T Consensus         2 ~d~C~~---~PC~ngg~C~~~~~~y~C~C~~g~~   32 (37)
T d2c4fl1           2 GDQCAS---SPCQNGGSCKDQLQSYICFCLPAFE   32 (37)
T ss_dssp             CCGGGG---CCCCTTCEEEEETTEEEEECCTTEE
T ss_pred             cccCCC---CCCCCCCEEECCCCCeEEECCCCCc
Confidence            456754   67877  899999999999999886

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.99  E-value=0.033  Score=34.67  Aligned_cols=32  Identities=28%  Similarity=0.707  Sum_probs=24.1

Q ss_pred             CCccCC--ccccCCCCccccCCCCceecCCCcccc
Q psy952          354 TNQCGH--KCVDTLTGYYCECNTGYKLLEDGKACT  386 (573)
Q Consensus       354 ~~~C~~--~C~~~~~~~~C~C~~~f~c~~~~~c~~  386 (573)
                      ...|..  .|.|..++|.|.|..+|. .++..|++
T Consensus         6 ~~~C~~~A~C~Nt~Gsy~C~C~~Gy~-GdG~~C~~   39 (40)
T d1gl4a2           6 RHQCSVHAECRDYATGFCCRCVANYT-GNGRQCVA   39 (40)
T ss_dssp             GGGSCTTEEEEECSSCEEEEECTTEE-ECSSSEEE
T ss_pred             CCCCCCCCEeecCCCCeEeECCCCCc-CCCCEeeC
Confidence            345665  799999999999999997 44554554

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.95  E-value=5.9  Score=33.97  Aligned_cols=145  Identities=17%  Similarity=0.153  Sum_probs=86.7

Q ss_pred             CCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCc---eEEEEecC---CcCeEEEEecc--CCCcEEEEe
Q psy952           99 GRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIG---YVYFSSWN---LQAYIGKIGMD--GSNFTRILT  170 (573)
Q Consensus        99 ~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g---~LYwtd~~---~~~~I~r~~ld--G~~~~~l~~  170 (573)
                      +++|.++-...+.|...-++|.....|-   ..|-++..+|..+   .+|.-|..   ....|+..++.  |...++ . 
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLt---kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i-~-   99 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLN---REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRL-E-   99 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECC---SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEEC-T-
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEe---cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEe-c-
Confidence            4445444445677888888877655443   2366666666544   24555543   24578888888  654322 1 


Q ss_pred             cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCC--------ccceeEEEeeeCC---eEEEecCCC
Q psy952          171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ--------KVPHVFALTLFED---HIYWTDWNT  239 (573)
Q Consensus       171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~--------~~~~p~~ia~~~~---~lywtd~~~  239 (573)
                       ...-.....++.  ++.++-++-+..+....+-++|...+.+..-.        .-.+..|+.++++   .+|.+|..+
T Consensus       100 -spk~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~S  176 (313)
T d2hu7a1         100 -AVKPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS  176 (313)
T ss_dssp             -TSCSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             -CCceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEeccc
Confidence             011011124444  47777777777777777777887776665421        1235667777643   378888888


Q ss_pred             CceEEEeccCCc
Q psy952          240 KSINRADKFNGR  251 (573)
Q Consensus       240 ~~I~~~~~~~g~  251 (573)
                      +.+..+....|+
T Consensus       177 G~lri~tpkeGS  188 (313)
T d2hu7a1         177 GGLRVFDSGEGS  188 (313)
T ss_dssp             EEEEEECCSSEE
T ss_pred             CCEEEecCCCCc
Confidence            888777766554

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.82  E-value=0.085  Score=33.18  Aligned_cols=28  Identities=7%  Similarity=-0.162  Sum_probs=23.1

Q ss_pred             Ccccc-cccccccCccceee-eccceeecCCCC
Q psy952          274 GTTRH-AWLTAHRGSTTVAD-MIRSVYLGSGNK  304 (573)
Q Consensus       274 ~~Cs~-lCl~~~~~~~~~~C-Cp~~~~l~~d~~  304 (573)
                      +.|.| .|+..+   ++|+| |+.||.+..+++
T Consensus        10 ~~C~~~~C~Nt~---Gsy~C~C~~Gy~l~~d~~   39 (42)
T d1lmja2          10 LLCRGGVCHNTE---GSYRCECPPGHQLSPNIS   39 (42)
T ss_dssp             STTTTSEEEEET---TEEEEESCTTSCCCSSSC
T ss_pred             CCCCCCEeECCC---CCeEEeCCCCCeECcCCC
Confidence            45766 899998   78999 999999987654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.76  E-value=2.3  Score=41.24  Aligned_cols=125  Identities=12%  Similarity=-0.007  Sum_probs=79.1

Q ss_pred             CCeEEEEEcCCCcceEEEcCC-----CCCcceeEEeecCCcEEEEe--------CCCCeEEEEEcCCCceeEeccCCCCc
Q psy952           66 AKTIYRSRVGSTEKERVIRHD-----SHGLEGLAVDWVGRKLYWLD--------RHSKQLDVAELDGTNRKTLKTAIQDP  132 (573)
Q Consensus        66 ~~~I~~~~~~g~~~~~i~~~~-----~~~p~glavD~~~~~LY~td--------~~~~~I~~~~ldg~~~~~l~~~~~~P  132 (573)
                      .+.|+.+++.+...+.++...     ...+.+++|.+.++.|.++-        +..+.+++.++.+.....+...-...
T Consensus        35 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~~l~~~~~~~  114 (470)
T d2bgra1          35 ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNT  114 (470)
T ss_dssp             SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTE
T ss_pred             CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcccccccCCccc
Confidence            456888888776665555322     23567888888888877653        12356788899887766555444556


Q ss_pred             ceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecC----------------CCCCCCceEEEeccCCeEEEE
Q psy952          133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE----------------DDIAWPNALTLDYFTERLYWA  193 (573)
Q Consensus       133 ~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~----------------~~l~~P~glaiD~~~~~LYw~  193 (573)
                      ..+++.|...+|.|..   ...|+...+.+.....+....                .......++...|++.+|.++
T Consensus       115 ~~~~~SPDG~~ia~~~---~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~  188 (470)
T d2bgra1         115 QWVTWSPVGHKLAYVW---NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (470)
T ss_dssp             EEEEECSSTTCEEEEE---TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             cccccccCcceeeEee---cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCcccee
Confidence            7788899888888865   346777777766544433100                012234566777777777665

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.04  E-value=0.096  Score=32.29  Aligned_cols=28  Identities=36%  Similarity=1.058  Sum_probs=22.8

Q ss_pred             ccccCCCCCccCC--ccccCCCCccccCCCCce
Q psy952          347 DECAKVETNQCGH--KCVDTLTGYYCECNTGYK  377 (573)
Q Consensus       347 ~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~  377 (573)
                      ++|.+   .+|.+  .|.+..++|.|.|+.+|.
T Consensus         2 d~C~~---~PC~n~g~C~~~~~~y~C~C~~G~~   31 (39)
T d2vj3a2           2 NECVS---NPCQNDATCLDQIGEFQCICMPGYE   31 (39)
T ss_dssp             CTTTT---CCCCSSCEEEECSSCEEEECCTTEE
T ss_pred             cCCcC---CCCCCCCEEECCCCCEEEeCCCCCc
Confidence            45644   56877  899999999999999886

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=0.11  Score=32.88  Aligned_cols=28  Identities=11%  Similarity=0.189  Sum_probs=22.9

Q ss_pred             Cccc-ccccccccCccceee-eccceeecCCCC
Q psy952          274 GTTR-HAWLTAHRGSTTVAD-MIRSVYLGSGNK  304 (573)
Q Consensus       274 ~~Cs-~lCl~~~~~~~~~~C-Cp~~~~l~~d~~  304 (573)
                      +.|. |.|+..+   ++|+| |+.||.+..+++
T Consensus        11 ~~c~~~~C~Nt~---Gsy~C~C~~Gy~l~~~~~   40 (43)
T d1uzka2          11 GLCQGGKCINTF---GSFQCRCPTGYYLNEDTR   40 (43)
T ss_dssp             GGGBTSEEEECS---SCEEEECCTTCCBCTTTC
T ss_pred             CCcCCCEEECCC---CCeEeECCCCCeECcCCC
Confidence            3454 6899998   78999 999999987765

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=86.99  E-value=10  Score=37.81  Aligned_cols=101  Identities=12%  Similarity=0.069  Sum_probs=51.0

Q ss_pred             eEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC-CeEEEEeCCCCcEEE
Q psy952          134 GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL-DYIASVDLDGKHKHI  212 (573)
Q Consensus       134 ~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~-~~I~~~~~dG~~~~~  212 (573)
                      .+++|+..+.+||.-....+      ..+..+   .  ...+....=+|||...+++.|..... +-++.  +|.....+
T Consensus       239 ~~s~D~~~g~~y~~tg~~~p------~~~~~r---~--g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd--~D~~~~~~  305 (571)
T d2ad6a1         239 WYAYDPKLNLFYYGSGNPAP------WNETMR---P--GDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD--FAGVNQMV  305 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSC------SCGGGS---C--SCCTTTTEEEEEETTTCCEEEEEESSTTCSSC--CCCCCCCE
T ss_pred             ccccchhcCeeeeecccccC------cccccc---c--cccccccceeeeeccchhheecccccCccccc--cccccccc
Confidence            57999999999987632111      111111   0  12333345689999999999875432 22322  23222222


Q ss_pred             EEe---CCccceeEEEee-eCCeEEEecCCCCceEEEecc
Q psy952          213 VIS---GQKVPHVFALTL-FEDHIYWTDWNTKSINRADKF  248 (573)
Q Consensus       213 l~~---~~~~~~p~~ia~-~~~~lywtd~~~~~I~~~~~~  248 (573)
                      +..   .. ...+..+.. -.+.||.-|..++++....+.
T Consensus       306 l~~~~~~g-~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~  344 (571)
T d2ad6a1         306 LTDQPVNG-KMTPLLSHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             EEEEEETT-EEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             eeeeeccC-ccccceeeccccceEEEEecCCCcEeeeecc
Confidence            211   11 111111222 346777777777776554433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.54  E-value=10  Score=33.51  Aligned_cols=71  Identities=10%  Similarity=0.052  Sum_probs=44.3

Q ss_pred             EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee
Q psy952           48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK  123 (573)
Q Consensus        48 ~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~  123 (573)
                      ..|++|  ++. .++-...+.|...++........+...-..+.+|++..  +.++++-...+.|.+.++......
T Consensus        17 tc~~~~--~~~-l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~--~~~l~s~s~D~~i~iw~~~~~~~~   87 (355)
T d1nexb2          17 TCLQFE--DNY-VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--GGILVSGSTDRTVRVWDIKKGCCT   87 (355)
T ss_dssp             EEEEEE--TTE-EEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET--TTEEEEEETTCCEEEEETTTTEEE
T ss_pred             EEEEEC--CCE-EEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC--CCEEEEEecccccccccccccccc
Confidence            456776  444 44555677899999875443333333335678888864  445556556778888887765543

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=0.23  Score=29.15  Aligned_cols=32  Identities=34%  Similarity=0.970  Sum_probs=25.3

Q ss_pred             ccccCCCCCccCC-ccccCCCCccccCCCCceecC
Q psy952          347 DECAKVETNQCGH-KCVDTLTGYYCECNTGYKLLE  380 (573)
Q Consensus       347 ~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~c~~  380 (573)
                      ++|..  ..+|++ +|.|..+.+.|.|..+|.-.+
T Consensus         2 dECsi--gnpCGnGTCtNviGgFec~C~~GFepgp   34 (39)
T d1emoa2           2 DECSV--GNPCGNGTCKNVIGGFECTCEEGFEPGP   34 (39)
T ss_dssp             CGGGT--TCSSSSSCEEECSSSEEECCSSSSCCCS
T ss_pred             Ccccc--CCccCCceeeecccceEEeecCCcCCCc
Confidence            35655  367999 999999999999999886433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.56  E-value=5.5  Score=40.01  Aligned_cols=28  Identities=11%  Similarity=0.172  Sum_probs=19.6

Q ss_pred             EeeeCCeEEEecCCCCceEEEeccCCcce
Q psy952          225 LTLFEDHIYWTDWNTKSINRADKFNGRDY  253 (573)
Q Consensus       225 ia~~~~~lywtd~~~~~I~~~~~~~g~~~  253 (573)
                      |+..++.||..+ ..+.++.++..+|+.+
T Consensus       493 lstagglVF~Gt-~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         493 LATAGNLVFTGT-GDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             EEETTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             eEEcCCeEEEeC-CCCeEEEEECCCCcEe
Confidence            445567777654 4567888888888765

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.35  E-value=16  Score=34.62  Aligned_cols=232  Identities=11%  Similarity=0.083  Sum_probs=116.8

Q ss_pred             CEEEEEe------cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECC---------------CCeEEEEEc
Q psy952           17 PWLIFSN------KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVA---------------AKTIYRSRV   74 (573)
Q Consensus        17 ~~l~~s~------~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~---------------~~~I~~~~~   74 (573)
                      .+|+++.      ...|+.+++.+.... ..+.. ....+++|...+..||++...               ..+|++..+
T Consensus       137 ~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~l  215 (430)
T d1qfma1         137 EYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVL  215 (430)
T ss_dssp             SEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEET
T ss_pred             CEEEEEeccccCchheeEEeccCcceeccccccc-ccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEEC
Confidence            4566553      246777788766432 11111 112467898888899987532               236888777


Q ss_pred             CCCcce-EEEcCCCCCc---ceeEEeecCCcEEEEeC----CCCeEEEEEcCCCce--------eEeccCCCCcceEEEe
Q psy952           75 GSTEKE-RVIRHDSHGL---EGLAVDWVGRKLYWLDR----HSKQLDVAELDGTNR--------KTLKTAIQDPRGITLH  138 (573)
Q Consensus        75 ~g~~~~-~i~~~~~~~p---~glavD~~~~~LY~td~----~~~~I~~~~ldg~~~--------~~l~~~~~~P~~Iavd  138 (573)
                      .....+ +++-.....+   .++.+...++.|++.-.    ....++.+++.....        ..++.........+.+
T Consensus       216 gt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (430)
T d1qfma1         216 GTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTN  295 (430)
T ss_dssp             TSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEE
T ss_pred             CCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceEEEec
Confidence            654322 2332222222   23344444455554321    123466666543211        1222222222333223


Q ss_pred             CCCceEEE-EecC-CcCeEEEEeccCCC---cEEEEecCCCCCCCceEEEeccCCeEEEE--eCCCCeEEEEeCCCCcEE
Q psy952          139 PGIGYVYF-SSWN-LQAYIGKIGMDGSN---FTRILTHEDDIAWPNALTLDYFTERLYWA--DAHLDYIASVDLDGKHKH  211 (573)
Q Consensus       139 p~~g~LYw-td~~-~~~~I~r~~ldG~~---~~~l~~~~~~l~~P~glaiD~~~~~LYw~--D~~~~~I~~~~~dG~~~~  211 (573)
                       ..+.+|+ |+.. .+.+|.++.++...   -+.++  ...=..-..-.+...++.|++.  +....+|..++++|....
T Consensus       296 -~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi--~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~  372 (430)
T d1qfma1         296 -EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV--PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL  372 (430)
T ss_dssp             -ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEE--CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             -CCceeecccCcccccceeEEecCCCCccccceEEe--cccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEE
Confidence             2444554 5543 25689988887433   24555  2110000111223346777766  344568999999887776


Q ss_pred             EEEeCCccceeEEEee--eCCeEEE--ecCCC-CceEEEeccCCcce
Q psy952          212 IVISGQKVPHVFALTL--FEDHIYW--TDWNT-KSINRADKFNGRDY  253 (573)
Q Consensus       212 ~l~~~~~~~~p~~ia~--~~~~lyw--td~~~-~~I~~~~~~~g~~~  253 (573)
                      .+.... .....++..  ..+.|++  +.+.+ .+|+..+..+|+..
T Consensus       373 ~~~~~~-~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         373 KIFPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             EEECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             EecCCC-CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence            665432 333344432  2344554  34333 56888887777643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.86  E-value=11  Score=32.57  Aligned_cols=90  Identities=11%  Similarity=-0.000  Sum_probs=54.3

Q ss_pred             EEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEe-c-
Q psy952           50 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-K-  126 (573)
Q Consensus        50 v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l-~-  126 (573)
                      .++.+..+.+.++-...+.|..+++........+... ...+..|++.+.+..|+..+ ..+.|.+.++........ . 
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~-~dg~i~i~d~~~~~~~~~~~~  202 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGD-VMGKILLYDLQSREVKTSRWA  202 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEE-TTSCEEEEETTTTEEEECCSC
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCcccccccc-ccccccceeeccccccccccc
Confidence            3455556777777666667777777644333222222 24577899987666666555 567899888875543322 1 


Q ss_pred             cCCCCcceEEEeCC
Q psy952          127 TAIQDPRGITLHPG  140 (573)
Q Consensus       127 ~~~~~P~~Iavdp~  140 (573)
                      ........|++.|.
T Consensus       203 ~h~~~v~~~~~~p~  216 (287)
T d1pgua2         203 FRTSKINAISWKPA  216 (287)
T ss_dssp             CCSSCEEEEEECCC
T ss_pred             ccccccceeeeccc
Confidence            22334667777764

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.66  E-value=0.25  Score=30.31  Aligned_cols=23  Identities=39%  Similarity=1.009  Sum_probs=20.0

Q ss_pred             CccCC--ccccCCCCccccCCCCce
Q psy952          355 NQCGH--KCVDTLTGYYCECNTGYK  377 (573)
Q Consensus       355 ~~C~~--~C~~~~~~~~C~C~~~f~  377 (573)
                      .+|.+  .|.+..+.|.|.|+.+|.
T Consensus         6 ~PC~ngg~C~~~~~~y~C~C~~G~~   30 (39)
T d1xkba1           6 SPCQNQGKCKDGLGEYTCTCLEGFE   30 (39)
T ss_dssp             CCCCSSCEECCCSSSCCEECCTTEE
T ss_pred             CCCCCCcEEECCCCCEEEECCCCCC
Confidence            56777  899999999999999986

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.42  E-value=0.14  Score=31.59  Aligned_cols=29  Identities=34%  Similarity=0.902  Sum_probs=23.4

Q ss_pred             CccccCCCCCccCC--ccccCCCCccccCCCCce
Q psy952          346 VDECAKVETNQCGH--KCVDTLTGYYCECNTGYK  377 (573)
Q Consensus       346 ~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~  377 (573)
                      +++|.+   .+|.+  .|.+..+.|.|.|+.+|.
T Consensus         3 ~d~C~~---~PC~ngg~C~~~~~~y~C~C~~g~~   33 (39)
T d1edmb_           3 GDQCES---NPCLNGGSCKDDINSYECWCPFGFE   33 (39)
T ss_dssp             CCTTTT---CCCCTTCEEEEETTEEEEECCTTCC
T ss_pred             cccCCC---CCCCCCcEEEcCCCCEEEECCCCCC
Confidence            456654   67877  899999999999998885

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=84.10  E-value=12  Score=37.14  Aligned_cols=198  Identities=11%  Similarity=0.015  Sum_probs=97.1

Q ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCC------------CeEEEEE
Q psy952           49 AMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHS------------KQLDVAE  116 (573)
Q Consensus        49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~------------~~I~~~~  116 (573)
                      .+++|++.+.+||.-.....     .............+....=+|+|..++.+-|.-...            ..+..+.
T Consensus       234 ~~s~D~~~~l~y~~tgn~~~-----~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~  308 (560)
T d1kv9a2         234 SMAYDPELDLLYVGTGNGSP-----WNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN  308 (560)
T ss_dssp             CEEEETTTTEEEEECCCEES-----SCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred             ccccccccCeeeecCCCCcc-----cccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeee
Confidence            47899999999985322100     000000000011122334478888888888864211            1223344


Q ss_pred             cCCCceeEeccCCCCcceEEEeCCCceEEEEecCC-cCeEEEEeccC-----------CCcEEEEecCC--CCCCCceEE
Q psy952          117 LDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDG-----------SNFTRILTHED--DIAWPNALT  182 (573)
Q Consensus       117 ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG-----------~~~~~l~~~~~--~l~~P~gla  182 (573)
                      .+|..+.+++..-..-.-.++|..+|.+.|..... .......++..           .....++. ..  .-..-.+.+
T Consensus       309 ~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-p~~~Gg~~w~~~a  387 (560)
T d1kv9a2         309 IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMW-PSPFGAHNWHSMS  387 (560)
T ss_dssp             ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEES-SCTTCSSCSSCCE
T ss_pred             cCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeee-ecccccccccccc
Confidence            56666666654444455567777777777775321 11112222111           11111110 01  111123778


Q ss_pred             EeccCCeEEEEeCCC-----------------------------------CeEEEEeCCCCcEEEEEeCCccceeEEEee
Q psy952          183 LDYFTERLYWADAHL-----------------------------------DYIASVDLDGKHKHIVISGQKVPHVFALTL  227 (573)
Q Consensus       183 iD~~~~~LYw~D~~~-----------------------------------~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~  227 (573)
                      +|+..+.+|+.-...                                   +.|..+|+......--........--.|+.
T Consensus       388 ~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T  467 (560)
T d1kv9a2         388 FNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLST  467 (560)
T ss_dssp             EETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE
T ss_pred             ccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeEE
Confidence            999999999864321                                   234455554433322111110001113455


Q ss_pred             eCCeEEEecCCCCceEEEeccCCcce
Q psy952          228 FEDHIYWTDWNTKSINRADKFNGRDY  253 (573)
Q Consensus       228 ~~~~lywtd~~~~~I~~~~~~~g~~~  253 (573)
                      .++.||..+ ..+.++.++..+|+.+
T Consensus       468 agglVF~G~-~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         468 AGNLVFQGT-AAGQMHAYSADKGEAL  492 (560)
T ss_dssp             TTTEEEEEC-TTSEEEEEETTTCCEE
T ss_pred             CCCEEEEEC-CCCcEEEEECCCCcEe
Confidence            667777654 4677888888888765

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.33  E-value=0.46  Score=30.54  Aligned_cols=28  Identities=36%  Similarity=1.137  Sum_probs=22.7

Q ss_pred             ccccCCCCCccCC-ccccCCCCccccCCCCce
Q psy952          347 DECAKVETNQCGH-KCVDTLTGYYCECNTGYK  377 (573)
Q Consensus       347 ~~C~~~~~~~C~~-~C~~~~~~~~C~C~~~f~  377 (573)
                      +.|..   .+|.+ +|.+..++|.|.|+.+|.
T Consensus         9 ~~C~~---~PC~nG~C~~~~~~y~C~C~~G~~   37 (48)
T d1autl1           9 HPCAS---LCCGHGTCIDGIGSFSCDCRSGWE   37 (48)
T ss_dssp             CSSSS---TTTTSEEECCCSSCCCEEECTTEE
T ss_pred             CcccC---CCCCCCEEECCCCCCeEeCCCCCc
Confidence            45543   67877 899999999999999996

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=80.89  E-value=13  Score=37.26  Aligned_cols=50  Identities=8%  Similarity=0.011  Sum_probs=28.7

Q ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEe
Q psy952           49 AMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD  106 (573)
Q Consensus        49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td  106 (573)
                      .+++|++.+.|||.-..... +    .. ..+  ...++....=+|+|..++.+.|.-
T Consensus       245 ~~s~D~~~~lvy~~tg~~~p-~----~~-~~r--~g~n~ys~sivAlD~~TG~~~W~~  294 (596)
T d1w6sa_         245 WYAYDPGTNLIYFGTGNPAP-W----NE-TMR--PGDNKWTMTIFGRDADTGEAKFGY  294 (596)
T ss_dssp             CCEEETTTTEEEEECCCCSC-S----CG-GGS--CSCCTTSSEEEEEETTTCCEEEEE
T ss_pred             ccccccCCCeeecccccccc-c----cc-ccc--cccccccccccccccccccccccc
Confidence            66899999999997433211 0    00 000  011122333478888888888854