Psyllid ID: psy954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY
Secondary Structure (PSIPRED)
cccccccEEEEcccccccEEEEEEccEEEEEEcccccEEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccEEcccccEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccEEEEEEccEEEEEEccccEEEEEEcccccccEEEEEccccccccEEEEcccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccEEcccccEccccEEEcccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccEccccccccccEEccccEEcccccccccccccccccccccccccccccEEEcccccEEEHHHcccccccccccHHHcccccccccccccccEEcccccEccccEEcccccccccccccccccc
Coil and Loop (DISEMBL)
MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRledsprdihvysadsqkcsvnpcnihnggcaqschpgpngtaeckcdestklvNEGRMCvaknitcdgskffcrngkcisrmwscdgdddcgdnsdedpnycnvqitgvsqppgelgvpghvqitgvsqppgIVMVMTTVQTglmnhpnnrkcdeeteftctenkawnraqcipkkwlcdgdpdcvdgadenttalncpkqsscspdqfscgngrcintgwlcdhdndcgdgsdegkechdkyrtcsseefaCQNFKCirktyhcdgeddcgdrsdefncny
Flexible Loop (DISEMBL)
mriatgasMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVaknitcdgskfFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHcdgeddcgdrsdefncny
Low Complexity Region (SEG)
MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRMWscdgdddcgdnsdedPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY
Disordered region (IsUnstruct)
*****GASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLE***RDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRMWSCDGDDDC********NYCNVQITGVSQ**GELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE*TTAL***********QFSCGNGRCINTGWLCDHDNDCGD******ECHDKYRTCSSEEFACQNFKCIRKTYHCDG***************
Disordered Region (DISOPRED)
MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVY****Q*****PCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY
Disordered Region (DISEMBL)
MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY
Disordered Region (DISPRO)
**IATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF*C**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
A2ARV4	4660	Low-density lipoprotein r	yes	N/A	0.940	0.068	0.374	5e-50
P98164	4655	Low-density lipoprotein r	yes	N/A	0.928	0.067	0.365	9e-50
P98158	4660	Low-density lipoprotein r	yes	N/A	0.940	0.068	0.374	1e-49
Q91ZX7	4545	Prolow-density lipoprotei	no	N/A	0.922	0.068	0.367	2e-48
Q07954	4544	Prolow-density lipoprotei	no	N/A	0.922	0.068	0.364	4e-48
P98157	4543	Low-density lipoprotein r	no	N/A	0.919	0.068	0.360	1e-45
Q9JI18	4599	Low-density lipoprotein r	no	N/A	0.872	0.063	0.346	8e-40
Q9NZR2	4599	Low-density lipoprotein r	no	N/A	0.872	0.063	0.346	3e-39
O88307	2215	Sortilin-related receptor	no	N/A	0.759	0.115	0.306	6e-33
Q92673	2214	Sortilin-related receptor	no	N/A	0.759	0.115	0.297	2e-32

>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1

 Score =  198 bits (503), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 185/358 (51%), Gaps = 41/358 (11%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIH-VYSA 68
            V+IS   + F +TV+  YIYWTD   + +YRA K+ G+++I M  RL   P  I  V   
Sbjct: 2588 VVISTAFHSFGLTVYGQYIYWTDFYTKKIYRANKYDGSDLIAMTTRLPTQPSGISTVVKT 2647

Query: 69   DSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKC--DESTKLVNEGRMCVAKN-ITCDGSK 125
              Q+CS NPC+  NGGC+  C PGPNG AEC+C  + S  L N+ + CV      C+  +
Sbjct: 2648 QQQQCS-NPCDQFNGGCSHICAPGPNG-AECQCPHEGSWYLANDNKYCVVDTGARCNQFQ 2705

Query: 126  FFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQI---TGVSQPPGELGVPGHVQ---- 178
            F C NG+CIS+ W CD D+DCGD SDE P  C       T  +   G   VP H +    
Sbjct: 2706 FTCLNGRCISQDWKCDNDNDCGDGSDELPTVCAFHTCRSTAFTCANGRC-VPYHYRCDFY 2764

Query: 179  -------------------ITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEET--EFTCT 217
                                T  +   G  + ++ V  G+ N  +N   DE+     TC 
Sbjct: 2765 NDCGDNSDEAGCLFRSCNSTTEFTCSNGRCIPLSYVCNGINNCHDNDTSDEKNCPPITCQ 2824

Query: 218  EN--KAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGN-GRCINT 274
             +  K      C+P+ +LCDGD DC DG+DEN   + C    +C  ++F C +  RCI +
Sbjct: 2825 PDFAKCQTTNICVPRAFLCDGDNDCGDGSDEN--PIYCASH-TCRSNEFQCVSPHRCIPS 2881

Query: 275  GWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
             W CD + DC D SDE   C     +CS+ +F C N +CI  ++ CDG++DCGD SDE
Sbjct: 2882 YWFCDGEADCVDSSDEPDTCGHSLNSCSANQFHCDNGRCISSSWVCDGDNDCGDMSDE 2939

Acts together with cubilin to mediate HDL endocytosis.
Mus musculus (taxid: 10090)

>sp|P98164|LRP2_HUMAN Low-density lipoprotein receptor-related protein 2 OS=Homo sapiens GN=LRP2 PE=1 SV=3

 Score =  197 bits (501), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 174/361 (48%), Gaps = 48/361 (13%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
            V+++A ++ F +T++  YIYWTDL  + +YRA K+ G+  I M   L   PR I+    +
Sbjct: 2587 VIVNAAVHAFGLTLYGQYIYWTDLYTQRIYRANKYDGSGQIAMTTNLLSQPRGINTVVKN 2646

Query: 70   SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKC--DESTKLVNEGRMCVAKN-ITCDGSKF 126
             ++   NPC   NGGC+  C PGPNG AEC+C  + +  L N  + C+  N   C  S F
Sbjct: 2647 QKQQCNNPCEQFNGGCSHICAPGPNG-AECQCPHEGNWYLANNRKHCIVDNGERCGASSF 2705

Query: 127  FCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGH-VQITGV--- 182
             C NG+CIS  W CD D+DCGD SDE  + C +       P       G  VQ +     
Sbjct: 2706 TCSNGRCISEEWKCDNDNDCGDGSDEMESVCALH---TCSPTAFTCANGRCVQYSYRCDY 2762

Query: 183  -------SQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCT------------------ 217
                   S   G +       T  M   NNR+C    EF C                   
Sbjct: 2763 YNDCGDGSDEAGCLFRDCNATTEFMC--NNRRCIPR-EFICNGVDNCHDNNTSDEKNCPD 2819

Query: 218  ------ENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRC 271
                    K  N   CIP+ +LCDGD DC D +DEN T        +CS  +F C +GRC
Sbjct: 2820 RTCQSGYTKCHNSNICIPRVYLCDGDNDCGDNSDENPTYCT---THTCSSSEFQCASGRC 2876

Query: 272  INTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSD 331
            I   W CD + DC D SDE   C    RTC ++EF C   +CI   + CDG++DCGD SD
Sbjct: 2877 IPQHWYCDQETDCFDASDEPASCGHSERTCLADEFKCDGGRCIPSEWICDGDNDCGDMSD 2936

Query: 332  E 332
            E
Sbjct: 2937 E 2937

Acts together with cubilin to mediate HDL endocytosis (By similarity). May participate in regulation of parathyroid-hormone and para-thyroid-hormone-related protein release.

Homo sapiens (taxid: 9606)

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score =  197 bits (501), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 134/358 (37%), Positives = 185/358 (51%), Gaps = 41/358 (11%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIH-VYSA 68
            V++S   + F +TV+  YIYWTDL  R +YRA K+ G++++ M  RL   P  I  V   
Sbjct: 2588 VVVSTAFHSFGLTVYGQYIYWTDLYTRKIYRANKYDGSDLVAMTTRLPTQPSGISTVVKT 2647

Query: 69   DSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKC--DESTKLVNEGRMCVAKNIT-CDGSK 125
              Q+CS NPC+  NGGC+  C PGPNG AEC+C  + +  L N+ + CV    T C+  +
Sbjct: 2648 QRQQCS-NPCDQFNGGCSHICAPGPNG-AECQCPHEGNWYLANDNKYCVVDTGTRCNQLQ 2705

Query: 126  FFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQI---TGVSQPPGELGVPGHVQ---- 178
            F C NG CI++ W CD D+DCGD SDE P  C       T  +   G   VP H +    
Sbjct: 2706 FTCLNGHCINQDWKCDNDNDCGDGSDELPTVCAFHTCRSTAFTCGNGRC-VPYHYRCDYY 2764

Query: 179  -------------------ITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEET--EFTCT 217
                                T  +   G  + ++ V  G+ N  +N   DE+     TC 
Sbjct: 2765 NDCGDNSDEAGCLFRNCNSTTEFTCSNGRCIPLSYVCNGINNCHDNDTSDEKNCPPHTCP 2824

Query: 218  EN--KAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGN-GRCINT 274
             +  K      C+P+ +LCDGD DC DG+DEN   + C    +C  ++F C +  RCI +
Sbjct: 2825 PDFTKCQTTNICVPRAFLCDGDNDCGDGSDEN--PIYCASH-TCRSNEFQCLSPQRCIPS 2881

Query: 275  GWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
             W CD + DC DGSDE   C     TC + +F C N +CI   + CDG++DCGD SDE
Sbjct: 2882 YWFCDGEADCADGSDEPDTCGHSVNTCRASQFQCDNGRCISGNWVCDGDNDCGDMSDE 2939

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.

Rattus norvegicus (taxid: 10116)

>sp|Q91ZX7|LRP1_MOUSE Prolow-density lipoprotein receptor-related protein 1 OS=Mus musculus GN=Lrp1 PE=1 SV=1

 Score =  193 bits (490), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/362 (36%), Positives = 187/362 (51%), Gaps = 51/362 (14%)

Query: 9    MVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSA 68
            +VL     + FA+T+  +Y+YWTD + + + RA K TGAN   ++  L   P D+HV+ A
Sbjct: 3226 VVLSQDIPHIFALTLFEDYVYWTDWETKSINRAHKTTGANKTLLISTLH-RPMDLHVFHA 3284

Query: 69   DSQKCSVN-PCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFF 127
              Q    N PC ++NGGC+  C   P G  +C C  +  L  +GR CV+    C  S+F 
Sbjct: 3285 LRQPDVPNHPCKVNNGGCSNLCLLSPGGGHKCACPTNFYLGGDGRTCVSN---CTASQFV 3341

Query: 128  CRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQ--------ITGVSQPPG---------- 169
            C+N KCI   W CD +DDCGD+SDE P+    +         TG+   P           
Sbjct: 3342 CKNDKCIPFWWKCDTEDDCGDHSDEPPDCPEFKCRPGQFQCSTGICTNPAFICDGDNDCQ 3401

Query: 170  ----------ELGVPGHVQITGVSQ-PPGIVMVMTTVQTGLMNHPNNRKCDEET----EF 214
                       + +P   + T  ++  PGI         G  +  + R C E T    +F
Sbjct: 3402 DNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCG--DGEDERDCPEVTCAPNQF 3459

Query: 215  TCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGN-GRCIN 273
             C+  K     +CIP+ W+CD D DCVDG+DE     NC  Q +C  D+F C + GRCI 
Sbjct: 3460 QCSITK-----RCIPRVWVCDRDNDCVDGSDE---PANC-TQMTCGVDEFRCKDSGRCIP 3510

Query: 274  TGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 333
              W CD ++DCGDGSDE KE  D+ RTC   +F C+N +C+   + CD ++DCGD SDE 
Sbjct: 3511 ARWKCDGEDDCGDGSDEPKEECDE-RTCEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDEE 3569

Query: 334  NC 335
            +C
Sbjct: 3570 SC 3571

Functions as a receptor for Vibrio cholerae cholix toxin and for Pseudomonas aeruginosa exotoxin A.

Mus musculus (taxid: 10090)

>sp|Q07954|LRP1_HUMAN Prolow-density lipoprotein receptor-related protein 1 OS=Homo sapiens GN=LRP1 PE=1 SV=2

 Score =  192 bits (487), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/362 (36%), Positives = 187/362 (51%), Gaps = 51/362 (14%)

Query: 9    MVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSA 68
            +VL     + FA+T+  +Y+YWTD + + + RA K TG N   ++  L   P D+HV+ A
Sbjct: 3225 VVLSQDIPHIFALTLFEDYVYWTDWETKSINRAHKTTGTNKTLLISTLH-RPMDLHVFHA 3283

Query: 69   DSQKCSVN-PCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFF 127
              Q    N PC ++NGGC+  C   P G  +C C  +  L ++GR CV+    C  S+F 
Sbjct: 3284 LRQPDVPNHPCKVNNGGCSNLCLLSPGGGHKCACPTNFYLGSDGRTCVSN---CTASQFV 3340

Query: 128  CRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQ--------ITGVSQPPG---------- 169
            C+N KCI   W CD +DDCGD+SDE P+    +         TG+   P           
Sbjct: 3341 CKNDKCIPFWWKCDTEDDCGDHSDEPPDCPEFKCRPGQFQCSTGICTNPAFICDGDNDCQ 3400

Query: 170  ----------ELGVPGHVQITGVSQ-PPGIVMVMTTVQTGLMNHPNNRKCDEET----EF 214
                       + +P   + T  ++  PGI         G  +  + R C E T    +F
Sbjct: 3401 DNSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCG--DGEDERDCPEVTCAPNQF 3458

Query: 215  TCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGN-GRCIN 273
             C+  K     +CIP+ W+CD D DCVDG+DE     NC  Q +C  D+F C + GRCI 
Sbjct: 3459 QCSITK-----RCIPRVWVCDRDNDCVDGSDE---PANC-TQMTCGVDEFRCKDSGRCIP 3509

Query: 274  TGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 333
              W CD ++DCGDGSDE KE  D+ RTC   +F C+N +C+   + CD ++DCGD SDE 
Sbjct: 3510 ARWKCDGEDDCGDGSDEPKEECDE-RTCEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDEE 3568

Query: 334  NC 335
            +C
Sbjct: 3569 SC 3570

Functions as a receptor for Pseudomonas aeruginosa exotoxin A.

Homo sapiens (taxid: 9606)

>sp|P98157|LRP1_CHICK Low-density lipoprotein receptor-related protein 1 OS=Gallus gallus GN=LRP1 PE=2 SV=1

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/361 (36%), Positives = 181/361 (50%), Gaps = 51/361 (14%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
            VL     + FA+T+  +YIYWTD + + + RA K TGAN   ++  L   P DIH+Y   
Sbjct: 3223 VLSQDIPHIFALTLFEDYIYWTDWETKSINRAHKTTGANKTLLISTLH-RPMDIHIYHPY 3281

Query: 70   SQKCSVN-PCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFC 128
             Q    N PC  +N GC+  C   P G  +C C  +  L ++G+ CV+    C  S+F C
Sbjct: 3282 RQPDVPNHPCKTNNAGCSNLCLLSPGGGHKCACPTNFYLGSDGKTCVSN---CTASQFVC 3338

Query: 129  RNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQ--------ITGVSQPPG----------- 169
            +N KCI   W CD +DDCGD SDE  +    +         TG+   P            
Sbjct: 3339 KNDKCIPFWWKCDTEDDCGDRSDEPEDCPEFKCRPGQFQCSTGICTNPAFICDGDNDCQD 3398

Query: 170  ---------ELGVPGHVQITGVSQ-PPGIVMVMTTVQTGLMNHPNNRKCDEET----EFT 215
                      + +P   + T  ++  PGI         G  +  + + C E T    +F 
Sbjct: 3399 NSDEANCDIHVCLPSQFKCTNTNRCIPGIFRCNGQDNCG--DGEDEKDCPEVTCAPNQFQ 3456

Query: 216  CTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGN-GRCINT 274
            C   K     +CIP+ W+CD D DCVDG+DE     NC  Q +C  D+F C + GRCI  
Sbjct: 3457 CAITK-----RCIPRVWVCDRDNDCVDGSDE---PANC-TQMTCGVDEFRCKDSGRCIPA 3507

Query: 275  GWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFN 334
             W CD ++DCGDGSDE KE  D+ RTC   +F C+N +C+   + CD ++DCGD SDE +
Sbjct: 3508 RWKCDGEDDCGDGSDEPKEECDE-RTCEPYQFRCKNNRCVPGRWQCDYDNDCGDNSDEES 3566

Query: 335  C 335
            C
Sbjct: 3567 C 3567

Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors.

Gallus gallus (taxid: 9031)

>sp|Q9JI18|LRP1B_MOUSE Low-density lipoprotein receptor-related protein 1B OS=Mus musculus GN=Lrp1b PE=2 SV=1

 Score =  164 bits (415), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 163/355 (45%), Gaps = 61/355 (17%)

Query: 19   FAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQK-CSVNP 77
             A+T+  +YIYWTD + + + R  K +GA+ + ++     +  DI VY +  Q   S + 
Sbjct: 3218 IALTLFEDYIYWTDGKTKSLSRVHKTSGADRLSLINSWH-AITDIQVYHSYRQPDVSKHL 3276

Query: 78   CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRM 137
            C ++NGGC+  C  GP  T  C C  +  L  + R C++    C  S+F C+  KCI   
Sbjct: 3277 CTVNNGGCSHLCLLGPGKTHTCACPTNFYLAADNRTCLSN---CTASQFRCKTDKCIPFW 3333

Query: 138  WSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI-TGVSQPPGIV------- 189
            W CD  DDCGD SDE P+ C          P     PG  Q  TG+   P  +       
Sbjct: 3334 WKCDTVDDCGDGSDE-PDDC----------PEFKCQPGRFQCGTGLCALPAFICDGENDC 3382

Query: 190  --------MVMTTVQTGLMNHPNNRKC--------------DEETEFTCTEN-------K 220
                            G      N+KC              DEE E  C EN       +
Sbjct: 3383 GDNSDELNCDTHVCLAGQFKCTKNKKCIPVNLRCNGQDDCGDEEDEKDCPENSCSPDYFQ 3442

Query: 221  AWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDH 280
                  CI K W+CD DPDC D +DE     NC K+ +C P +F C N  CI   W CD+
Sbjct: 3443 CKTTKHCISKLWVCDEDPDCADASDE----ANCDKK-TCGPHEFQCKNNNCIPDHWRCDN 3497

Query: 281  DNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
             NDC D SDE   C  K +TC+ ++F C N  C+   + CDGE DC D SDE NC
Sbjct: 3498 QNDCSDNSDE-DNC--KPQTCTLKDFLCSNGDCVSSRFWCDGEFDCADGSDEKNC 3549

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Mus musculus (taxid: 10090)

>sp|Q9NZR2|LRP1B_HUMAN Low-density lipoprotein receptor-related protein 1B OS=Homo sapiens GN=LRP1B PE=1 SV=2

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/355 (34%), Positives = 164/355 (46%), Gaps = 61/355 (17%)

Query: 19   FAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQK-CSVNP 77
             A+T+  +YIYWTD + + + RA K +GA+ + ++     +  DI VY +  Q   S + 
Sbjct: 3218 IALTLFEDYIYWTDGKTKSLSRAHKTSGADRLSLIYSWH-AITDIQVYHSYRQPDVSKHL 3276

Query: 78   CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRM 137
            C I+NGGC+  C   P  T  C C  +  L  + R C++    C  S+F C+  KCI   
Sbjct: 3277 CMINNGGCSHLCLLAPGKTHTCACPTNFYLAADNRTCLSN---CTASQFRCKTDKCIPFW 3333

Query: 138  WSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI-TGVSQPPGIVMV----- 191
            W CD  DDCGD SDE P+ C          P     PG  Q  TG+   P  +       
Sbjct: 3334 WKCDTVDDCGDGSDE-PDDC----------PEFRCQPGRFQCGTGLCALPAFICDGENDC 3382

Query: 192  ----------MTTVQTGLMNHPNNRKC--------------DEETEFTCTEN-------K 220
                           +G      N+KC              DEE E  C EN       +
Sbjct: 3383 GDNSDELNCDTHVCLSGQFKCTKNQKCIPVNLRCNGQDDCGDEEDERDCPENSCSPDYFQ 3442

Query: 221  AWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDH 280
                  CI K W+CD DPDC D +DE     NC K++ C P +F C N  CI   W CD 
Sbjct: 3443 CKTTKHCISKLWVCDEDPDCADASDE----ANCDKKT-CGPHEFQCKNNNCIPDHWRCDS 3497

Query: 281  DNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
             NDC D SDE + C  K +TC+ ++F C N  C+   + CDG+ DC D SDE NC
Sbjct: 3498 QNDCSDNSDE-ENC--KPQTCTLKDFLCANGDCVSSRFWCDGDFDCADGSDERNC 3549

Potential cell surface proteins that bind and internalize ligands in the process of receptor-mediated endocytosis.

Homo sapiens (taxid: 9606)

>sp|O88307|SORL_MOUSE Sortilin-related receptor OS=Mus musculus GN=Sorl1 PE=2 SV=3

 Score =  141 bits (356), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 155/343 (45%), Gaps = 87/343 (25%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVY--- 66
            V++ +  +P+AI V +N IYW D     ++RA KH+ +  +E++        D+ V+   
Sbjct: 955  VILDSLPHPYAIAVFKNEIYWDDWSQLSIFRASKHSRSQ-VEILASQLTGLMDMKVFYKG 1013

Query: 67   -SADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDE--STKLVNEGRM---------- 113
             +A S  C   PC++        C P  N +  C+C E  ++ ++  G +          
Sbjct: 1014 KNAGSNACVPQPCSL-------LCLPKANNSKSCRCPEGVASSVLPSGDLMCDCPQGYQR 1066

Query: 114  ----CVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPG 169
                CV +  TC  +++ C NG CI+ +W CD D+DCGD SD                  
Sbjct: 1067 KNNTCVKEENTCLRNQYRCSNGNCINSIWWCDFDNDCGDMSD------------------ 1108

Query: 170  ELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIP 229
            E   P                  TTV            CD +T+F C E+       CIP
Sbjct: 1109 ERNCP------------------TTV------------CDADTQFRCQES-----GTCIP 1133

Query: 230  KKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSD 289
              + CD + DC D +DE+   ++      C  D+F+C +G CI + W+CD DNDC D SD
Sbjct: 1134 LSYKCDLEDDCGDNSDESHCEMH-----QCRSDEFNCSSGMCIRSSWVCDGDNDCRDWSD 1188

Query: 290  EGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
            E   C   Y TC +  F C N  CI + + CDG+ DC D SDE
Sbjct: 1189 EAN-CTAIYHTCEASNFQCHNGHCIPQRWACDGDADCQDGSDE 1230

Likely to be a multifunctional endocytic receptor, that may be implicated in the uptake of lipoproteins and of proteases. Binds LDL, the major cholesterol-carrying lipoprotein of plasma, and transports it into cells by endocytosis. Binds the receptor-associated protein (RAP). Could play a role in cell-cell interaction. May play a role in neural organization, as well as the establishment of embryonic organ systems.

Mus musculus (taxid: 10090)

>sp|Q92673|SORL_HUMAN Sortilin-related receptor OS=Homo sapiens GN=SORL1 PE=1 SV=2

 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 153/343 (44%), Gaps = 87/343 (25%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVY--- 66
            V++    +P+AI V +N IYW D     ++RA K++G+ M E++        D+ ++   
Sbjct: 955  VILDNLPHPYAIAVFKNEIYWDDWSQLSIFRASKYSGSQM-EILANQLTGLMDMKIFYKG 1013

Query: 67   -SADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKC--DESTKLVNEGRM---------- 113
             +  S  C   PC++        C P  N +  C+C  D S+ ++  G +          
Sbjct: 1014 KNTGSNACVPRPCSL-------LCLPKANNSRSCRCPEDVSSSVLPSGDLMCDCPQGYQL 1066

Query: 114  ----CVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPG 169
                CV +  TC  +++ C NG CI+ +W CD D+DCGD SDE    C   I        
Sbjct: 1067 KNNTCVKQENTCLRNQYRCSNGNCINSIWWCDFDNDCGDMSDE--RNCPTTI-------- 1116

Query: 170  ELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIP 229
                                                  CD +T+F C E+       CIP
Sbjct: 1117 --------------------------------------CDLDTQFRCQES-----GTCIP 1133

Query: 230  KKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSD 289
              + CD + DC D +DE+   ++      C  D+++C +G CI + W+CD DNDC D SD
Sbjct: 1134 LSYKCDLEDDCGDNSDESHCEMH-----QCRSDEYNCSSGMCIRSSWVCDGDNDCRDWSD 1188

Query: 290  EGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
            E   C   Y TC +  F C+N  CI + + CDG+ DC D SDE
Sbjct: 1189 EAN-CTAIYHTCEASNFQCRNGHCIPQRWACDGDTDCQDGSDE 1230

Likely to be a multifunctional endocytic receptor, that may be implicated in the uptake of lipoproteins and of proteases. Binds LDL, the major cholesterol-carrying lipoprotein of plasma, and transports it into cells by endocytosis. Binds the receptor-associated protein (RAP). Could play a role in cell-cell interaction.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
242019639	4568	low-density lipoprotein receptor, putati	0.881	0.065	0.492	5e-85
270016386	1751	hypothetical protein TcasGA2_TC004260 [T	0.937	0.180	0.540	2e-82
91094565	1731	PREDICTED: similar to low-density lipopr	0.937	0.182	0.540	2e-82
321476336	4507	hypothetical protein DAPPUDRAFT_43397 [D	0.905	0.067	0.458	2e-75
357622730	4358	hypothetical protein KGM_12959 [Danaus p	0.884	0.068	0.498	9e-75
281360654	4769	megalin, isoform A [Drosophila melanogas	0.890	0.062	0.485	2e-74
195446934	4521	GK25553 [Drosophila willistoni] gi|19416	0.943	0.070	0.540	2e-74
195350484	2360	GM11366 [Drosophila sechellia] gi|194123	0.890	0.127	0.485	3e-74
195481687	3879	GE15450 [Drosophila yakuba] gi|194189263	0.890	0.077	0.485	3e-74
198471567	4543	GA11430 [Drosophila pseudoobscura pseudo	0.943	0.069	0.537	6e-74

>gi|242019639|ref|XP_002430267.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis] gi|212515374|gb|EEB17529.1| low-density lipoprotein receptor, putative [Pediculus humanus corporis]

 Score =  320 bits (821), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 186/378 (49%), Positives = 217/378 (57%), Gaps = 81/378 (21%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
            VL++ATIYPFAITVH NYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHV+S  
Sbjct: 2532 VLVAATIYPFAITVHGNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVFSKS 2591

Query: 70   SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR 129
             Q C  NPCNI+NGGCAQSCHPGPNG AECKCD+++KLVNE RMCV KN+TCD SKF+C+
Sbjct: 2592 RQMCDSNPCNINNGGCAQSCHPGPNGKAECKCDDNSKLVNENRMCVPKNLTCDSSKFYCK 2651

Query: 130  NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIV 189
            NGKCISRMWSCDGD+DCGD SDED NYC       S  P E        I          
Sbjct: 2652 NGKCISRMWSCDGDNDCGDGSDEDVNYCTYH----SCNPNEFRCANGRCI---------- 2697

Query: 190  MVMTTVQTGLMNHPNNRK------------CDEETEFTCTENKAWNRAQCIPKKWLCDGD 237
                  ++ + +H N+ K            CD  +EFTC   +      CIP   +C+G 
Sbjct: 2698 -----FKSWVCDHENDCKDGSDELECVYPPCD-SSEFTCANYR------CIPMSQVCNGV 2745

Query: 238  PDCVDGADENTTALNCPKQSSCSPDQFSCGNGR-CINTGWLCDHDNDCGDGSDEG----- 291
             DC D    + T   CPK ++C P+   C N   C+   WLCD DNDCGD SDE      
Sbjct: 2746 NDCKDNVTSDETHERCPKNTTCPPNHLKCSNTNICVEPYWLCDGDNDCGDNSDEDSLHCA 2805

Query: 292  -------------------------------------KECHDKYRTCSSEEFACQNFKCI 314
                                                 + C  + RTC  + F C N  CI
Sbjct: 2806 QRTCPQNSFRCPNHRCIPATWYCDGDDDCGDGADEPPEYCKSEGRTCFGDLFTCDNGNCI 2865

Query: 315  RKTYHCDGEDDCGDRSDE 332
             + Y CDG++DC D SDE
Sbjct: 2866 PRIYICDGDNDCLDNSDE 2883

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270016386|gb|EFA12832.1| hypothetical protein TcasGA2_TC004260 [Tribolium castaneum]

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 194/359 (54%), Positives = 227/359 (63%), Gaps = 43/359 (11%)

Query: 10  VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
           VL+SATIYPF+ITV+ +YIYWTDLQLRGVYRAEKHTG NMIEMVKRLEDSPRDI VY+  
Sbjct: 406 VLVSATIYPFSITVYGDYIYWTDLQLRGVYRAEKHTGNNMIEMVKRLEDSPRDIQVYTTT 465

Query: 70  SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR 129
            Q CSVNPCNI+NGGCA+SCHPGPN TAEC+CD+STKLVNEGRMCVAKN+TCD SKF+C 
Sbjct: 466 RQACSVNPCNINNGGCAKSCHPGPNATAECRCDDSTKLVNEGRMCVAKNLTCDTSKFYCA 525

Query: 130 NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI---------- 179
           NG+CISRMW+CDG+DDCGDNSDED NYC+      S  P E        I          
Sbjct: 526 NGRCISRMWACDGEDDCGDNSDEDTNYCSFH----SCSPNEFRCANGRCIFKSWKCDHEN 581

Query: 180 --------TGVSQPPGIV----------MVMTTVQTGLMNHPNNRKCDEETE-----FTC 216
                        PP  V          + M+ V  G+ +  +N   DE  E      TC
Sbjct: 582 DCKDGSDEKDCQYPPCAVGEFTCANHRCIPMSQVCNGVNDCKDNVTSDETHERCPQNTTC 641

Query: 217 TEN--KAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINT 274
             N  K      C+   WLCDGD DC D +DEN   L+C  Q +C  + F C N RCI  
Sbjct: 642 PANHLKCEKTNICVEPYWLCDGDNDCGDNSDEN--PLHC-AQRTCPQNSFRCPNHRCIPA 698

Query: 275 GWLCDHDNDCGDGSDEGKE-CHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
            W CD D+DCGDG+DE  E C  + RTC  + F C N  C+ + Y CDG++DC D SDE
Sbjct: 699 TWYCDGDDDCGDGADEPPEYCKSEGRTCFGDLFTCDNGNCVPRIYICDGDNDCLDNSDE 757

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094565|ref|XP_967627.1| PREDICTED: similar to low-density lipoprotein receptor (ldl), partial [Tribolium castaneum]

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 194/359 (54%), Positives = 227/359 (63%), Gaps = 43/359 (11%)

Query: 10  VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
           VL+SATIYPF+ITV+ +YIYWTDLQLRGVYRAEKHTG NMIEMVKRLEDSPRDI VY+  
Sbjct: 400 VLVSATIYPFSITVYGDYIYWTDLQLRGVYRAEKHTGNNMIEMVKRLEDSPRDIQVYTTT 459

Query: 70  SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR 129
            Q CSVNPCNI+NGGCA+SCHPGPN TAEC+CD+STKLVNEGRMCVAKN+TCD SKF+C 
Sbjct: 460 RQACSVNPCNINNGGCAKSCHPGPNATAECRCDDSTKLVNEGRMCVAKNLTCDTSKFYCA 519

Query: 130 NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI---------- 179
           NG+CISRMW+CDG+DDCGDNSDED NYC+      S  P E        I          
Sbjct: 520 NGRCISRMWACDGEDDCGDNSDEDTNYCSFH----SCSPNEFRCANGRCIFKSWKCDHEN 575

Query: 180 --------TGVSQPPGIV----------MVMTTVQTGLMNHPNNRKCDEETE-----FTC 216
                        PP  V          + M+ V  G+ +  +N   DE  E      TC
Sbjct: 576 DCKDGSDEKDCQYPPCAVGEFTCANHRCIPMSQVCNGVNDCKDNVTSDETHERCPQNTTC 635

Query: 217 TEN--KAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINT 274
             N  K      C+   WLCDGD DC D +DEN   L+C  Q +C  + F C N RCI  
Sbjct: 636 PANHLKCEKTNICVEPYWLCDGDNDCGDNSDEN--PLHC-AQRTCPQNSFRCPNHRCIPA 692

Query: 275 GWLCDHDNDCGDGSDEGKE-CHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
            W CD D+DCGDG+DE  E C  + RTC  + F C N  C+ + Y CDG++DC D SDE
Sbjct: 693 TWYCDGDDDCGDGADEPPEYCKSEGRTCFGDLFTCDNGNCVPRIYICDGDNDCLDNSDE 751

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321476336|gb|EFX87297.1| hypothetical protein DAPPUDRAFT_43397 [Daphnia pulex]

 Score =  288 bits (737), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 172/375 (45%), Positives = 216/375 (57%), Gaps = 70/375 (18%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
            VLI+ATIYPFAITV  N+IYWTDLQLRG+YRAEKHTGA+MIE+V+RL+DSPRD+ V+S +
Sbjct: 2475 VLITATIYPFAITVFGNFIYWTDLQLRGLYRAEKHTGADMIELVRRLDDSPRDLQVFSPE 2534

Query: 70   SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR 129
             Q+C  NPC  +NGGCAQSCHP  NGT+ECKCDESTKLVN+ RMCV +N+TC+G+KF+C 
Sbjct: 2535 RQRCQFNPCTFNNGGCAQSCHPSTNGTSECKCDESTKLVNDNRMCVGRNLTCEGNKFYCA 2594

Query: 130  NGKCISRMWS-----------------------------------------CDGDDDCGD 148
            NGKCISR+W+                                         CD ++DCGD
Sbjct: 2595 NGKCISRLWACDGDDDCGDNSDEDKGYCSFHTCGPIEYRCGNGRCIFKSWKCDHENDCGD 2654

Query: 149  NSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKC 208
            N+DED        T  S   GE        I+           MT V  G+ +  +    
Sbjct: 2655 NTDED------GCTYASCAEGEFTCANQRCIS-----------MTQVCNGINDCKDANTT 2697

Query: 209  DEETE-----FTCTEN--KAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSP 261
            DE ++      TC  N  K  +   C+   WLCDGD DC D +DEN +A     Q SC  
Sbjct: 2698 DEASDRCSRNTTCPSNHFKCNSTNICVEPFWLCDGDNDCGDNSDENDSACT---QRSCPS 2754

Query: 262  DQFSC-GNGRCINTGWLCDHDNDCGDGSDEGKE-CHDKYRTCSSEEFACQNFKCIRKTYH 319
            + F C  N RCI   W CD D+DCG+G+DE  + C    +TC  + F C N  CI + Y 
Sbjct: 2755 NSFRCPNNNRCIPATWYCDGDDDCGNGADEPPDYCKSGTKTCFGDLFTCDNGNCIPRIYI 2814

Query: 320  CDGEDDCGDRSDEFN 334
            CDG++DC D SDE N
Sbjct: 2815 CDGDNDCLDNSDEDN 2829

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622730|gb|EHJ74141.1| hypothetical protein KGM_12959 [Danaus plexippus]

 Score =  286 bits (732), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 188/377 (49%), Positives = 213/377 (56%), Gaps = 79/377 (20%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
            VLISATIYPFAITV  +YIYWTDLQLRGVYRAEKHTGANM+E+VKRLEDSPRDIH+YS  
Sbjct: 2567 VLISATIYPFAITVFGDYIYWTDLQLRGVYRAEKHTGANMVEIVKRLEDSPRDIHIYSTS 2626

Query: 70   SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR 129
             QKC  NPC I NGGCA SCHP PN T ECKCD++TKLVNEGRMCVAKN+TCD SKFFC 
Sbjct: 2627 RQKCQKNPCKISNGGCAHSCHPAPNNTVECKCDDNTKLVNEGRMCVAKNLTCDASKFFCA 2686

Query: 130  NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIV 189
            NGKCISRMWSCDGDDDCGDNSDED NYC       S  P E        I          
Sbjct: 2687 NGKCISRMWSCDGDDDCGDNSDEDKNYCAYH----SCSPNEFRCNNGRCI---------- 2732

Query: 190  MVMTTVQTGLMNHPNNRK--CDEE---------TEFTCTENKAWNRAQCIPKKWLCDGDP 238
                  +T   +H N+ K   DEE          EFTC  ++      CIPK  +C+G  
Sbjct: 2733 -----FKTWKCDHENDCKDGSDEEGCVYPPCADGEFTCLNSR------CIPKTQVCNGIN 2781

Query: 239  DCVDGADENTTALNCPKQSSCSPDQFSC-GNGRCINTGWLCDHDNDCGDGSDEG------ 291
            DC D    + T   CP+ ++C  +   C     C+   WLCD DNDCGD SDE       
Sbjct: 2782 DCKDNVTSDETHEMCPRNTTCPANHLKCEKTNICVEPYWLCDGDNDCGDNSDEDPLHCAQ 2841

Query: 292  ------------------------------------KECHDKYRTCSSEEFACQNFKCIR 315
                                                + C  + RTC  + F C N  CI 
Sbjct: 2842 RTCPQNSFRCPNHRCIPATWYCDGDDDCGDGADEPPEYCRSEGRTCFGDLFTCDNGNCIP 2901

Query: 316  KTYHCDGEDDCGDRSDE 332
            + Y CDGE+DC D SDE
Sbjct: 2902 RIYICDGENDCLDNSDE 2918

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281360654|ref|NP_001096924.2| megalin, isoform A [Drosophila melanogaster] gi|272506047|gb|ABW09371.2| megalin, isoform A [Drosophila melanogaster]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 184/379 (48%), Positives = 218/379 (57%), Gaps = 79/379 (20%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
            +L++ATIYPFAITV RNYIYWTDLQLRGVYRAEKHTGANM+EMVKRLEDSPRDI +YS+D
Sbjct: 2715 LLVAATIYPFAITVFRNYIYWTDLQLRGVYRAEKHTGANMVEMVKRLEDSPRDIRIYSSD 2774

Query: 70   SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR 129
             QKC+VNPC I+NGGCAQSCHP PNG AECKCD+STK+VNEGRMC  +N TC+ SKF+C+
Sbjct: 2775 RQKCNVNPCRINNGGCAQSCHPAPNGKAECKCDDSTKVVNEGRMCAPRNNTCEASKFYCK 2834

Query: 130  NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIV 189
            NG+CISRMWSCDGDDDCGDNSDEDPNYC       S  P E        I          
Sbjct: 2835 NGRCISRMWSCDGDDDCGDNSDEDPNYCAYH----SCSPNEFRCNNGRCI---------- 2880

Query: 190  MVMTTVQTGLMNHPNNRK--CDE---------ETEFTCTENKAWNRAQCIPKKWLCDGDP 238
                  ++   +H N+ K   DE         + EFTC   +      CIP+  +C+G  
Sbjct: 2881 -----FKSWKCDHENDCKDGSDELGCVYPPCVDGEFTCANGR------CIPQAQVCNGVN 2929

Query: 239  DCVDGADENTTALNCPKQSSCSPDQFSC-GNGRCINTGWLCDHDNDCGDGSDEGK----- 292
            DC D A  + T   CP  ++C  +   C     C+   WLCD DNDCGD SDE       
Sbjct: 2930 DCKDNATSDETHERCPMNTTCPANHLKCEKTNICVEPYWLCDGDNDCGDNSDEDPLHCGQ 2989

Query: 293  -------------------------------------ECHDKYRTCSSEEFACQNFKCIR 315
                                                  C  + RTC  + F C N  CI 
Sbjct: 2990 RTCPTNSFRCPNHRCIPATWYCDGDDDCGDGADEPPDYCKSEGRTCFGDLFTCDNGNCIP 3049

Query: 316  KTYHCDGEDDCGDRSDEFN 334
            + Y CDG++DC D SDE N
Sbjct: 3050 RIYICDGDNDCLDNSDEDN 3068

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195446934|ref|XP_002070989.1| GK25553 [Drosophila willistoni] gi|194167074|gb|EDW81975.1| GK25553 [Drosophila willistoni]

 Score =  285 bits (729), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 195/361 (54%), Positives = 229/361 (63%), Gaps = 43/361 (11%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
            +L++ATIYPFAITV R+YIYWTDLQLRGVYRAEKHTGANM+EMVKRLEDSPRDI +YSAD
Sbjct: 2470 LLVAATIYPFAITVFRDYIYWTDLQLRGVYRAEKHTGANMVEMVKRLEDSPRDIRIYSAD 2529

Query: 70   SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR 129
             QKC+VNPC I+NGGCAQSCHP PNG AECKCD+++K+VNEGRMC  +N TC+ SKF+C+
Sbjct: 2530 RQKCNVNPCRINNGGCAQSCHPAPNGKAECKCDDNSKVVNEGRMCAPRNNTCESSKFYCQ 2589

Query: 130  NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI---------- 179
            NGKCISRMWSCDGDDDCGDNSDEDPNYC       S  P E        I          
Sbjct: 2590 NGKCISRMWSCDGDDDCGDNSDEDPNYCAYH----SCSPNEFRCNNGRCIFKSWKCDHEN 2645

Query: 180  --------TGVSQPP----------GIVMVMTTVQTGLMNHPNNRKCDEETE-----FTC 216
                     G S PP          G  +  T V  G+ +  +N   DE  E      TC
Sbjct: 2646 DCKDGSDEVGCSYPPCVDGEFTCGNGRCIPQTQVCNGVNDCKDNATSDETRERCPMNTTC 2705

Query: 217  TEN--KAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINT 274
              N  K      C+   WLCDGD DC D +DE+   L+C  Q +C  + F C N RCI  
Sbjct: 2706 PANHLKCEKTNICVEPYWLCDGDNDCGDNSDED--PLHC-GQRTCPTNSFRCPNHRCIPA 2762

Query: 275  GWLCDHDNDCGDGSDEGKE-CHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 333
             W CD D+DCGDG+DE  + C  + RTC  + F C N  CI + Y CDG++DC D SDE 
Sbjct: 2763 TWYCDGDDDCGDGADEPPDYCKSEGRTCFGDLFTCDNGNCIPRIYICDGDNDCLDNSDED 2822

Query: 334  N 334
            N
Sbjct: 2823 N 2823

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195350484|ref|XP_002041770.1| GM11366 [Drosophila sechellia] gi|194123575|gb|EDW45618.1| GM11366 [Drosophila sechellia]

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 184/379 (48%), Positives = 218/379 (57%), Gaps = 79/379 (20%)

Query: 10  VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
           +L++ATIYPFAITV RNYIYWTDLQLRGVYRAEKHTGANM+EMVKRLEDSPRDI +YS+D
Sbjct: 432 LLVAATIYPFAITVFRNYIYWTDLQLRGVYRAEKHTGANMVEMVKRLEDSPRDIRIYSSD 491

Query: 70  SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR 129
            QKC+VNPC I+NGGCAQSCHP PNG AECKCD+STK+VNEGRMC  +N TC+ SKF+C+
Sbjct: 492 RQKCNVNPCRINNGGCAQSCHPAPNGKAECKCDDSTKVVNEGRMCAPRNNTCEASKFYCK 551

Query: 130 NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIV 189
           NG+CISRMWSCDGDDDCGDNSDEDPNYC       S  P E        I          
Sbjct: 552 NGRCISRMWSCDGDDDCGDNSDEDPNYCAYH----SCSPNEFRCNNGRCI---------- 597

Query: 190 MVMTTVQTGLMNHPNNRK--CDE---------ETEFTCTENKAWNRAQCIPKKWLCDGDP 238
                 ++   +H N+ K   DE         + EFTC   +      CIP+  +C+G  
Sbjct: 598 -----FKSWKCDHENDCKDGSDELGCIYPPCVDGEFTCANGR------CIPQAQVCNGVN 646

Query: 239 DCVDGADENTTALNCPKQSSCSPDQFSCGNGR-CINTGWLCDHDNDCGDGSDEGK----- 292
           DC D A  + T   CP  ++C  +   C     C+   WLCD DNDCGD SDE       
Sbjct: 647 DCKDNATSDETHERCPMNTTCPANHLKCEKTNICVEPYWLCDGDNDCGDNSDEDPLHCGQ 706

Query: 293 -------------------------------------ECHDKYRTCSSEEFACQNFKCIR 315
                                                 C  + RTC  + F C N  CI 
Sbjct: 707 RTCPTNSFRCPNHRCIPATWYCDGDDDCGDGADEPPDYCKSEGRTCFGDLFTCDNGNCIP 766

Query: 316 KTYHCDGEDDCGDRSDEFN 334
           + Y CDG++DC D SDE N
Sbjct: 767 RIYICDGDNDCLDNSDEDN 785

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195481687|ref|XP_002101739.1| GE15450 [Drosophila yakuba] gi|194189263|gb|EDX02847.1| GE15450 [Drosophila yakuba]

 Score =  285 bits (728), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 184/379 (48%), Positives = 218/379 (57%), Gaps = 79/379 (20%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
            +L++ATIYPFAITV RNYIYWTDLQLRGVYRAEKHTGANM+EMVKRLEDSPRDI +YS+D
Sbjct: 1825 LLVAATIYPFAITVFRNYIYWTDLQLRGVYRAEKHTGANMVEMVKRLEDSPRDIRIYSSD 1884

Query: 70   SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR 129
             QKC+VNPC I+NGGCAQSCHP PNG AECKCD+STK+VNEGRMC  +N TC+ SKF+C+
Sbjct: 1885 RQKCNVNPCRINNGGCAQSCHPAPNGKAECKCDDSTKVVNEGRMCAPRNNTCEASKFYCK 1944

Query: 130  NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIV 189
            NG+CISRMWSCDGDDDCGDNSDEDPNYC       S  P E        I          
Sbjct: 1945 NGRCISRMWSCDGDDDCGDNSDEDPNYCAYH----SCSPNEFRCNNGRCI---------- 1990

Query: 190  MVMTTVQTGLMNHPNNRK--CDE---------ETEFTCTENKAWNRAQCIPKKWLCDGDP 238
                  ++   +H N+ K   DE         + EFTC   +      CIP+  +C+G  
Sbjct: 1991 -----FKSWKCDHENDCKDGSDELGCTYPPCVDGEFTCANGR------CIPQAQVCNGVN 2039

Query: 239  DCVDGADENTTALNCPKQSSCSPDQFSC-GNGRCINTGWLCDHDNDCGDGSDEGK----- 292
            DC D A  + T   CP  ++C  +   C     C+   WLCD DNDCGD SDE       
Sbjct: 2040 DCKDNATSDETHERCPMNTTCPANHLKCEKTNICVEPYWLCDGDNDCGDNSDEDPLHCGQ 2099

Query: 293  -------------------------------------ECHDKYRTCSSEEFACQNFKCIR 315
                                                  C  + RTC  + F C N  CI 
Sbjct: 2100 RTCPTNSFRCPNHRCIPATWYCDGDDDCGDGADEPPDYCKSEGRTCFGDLFTCDNGNCIP 2159

Query: 316  KTYHCDGEDDCGDRSDEFN 334
            + Y CDG++DC D SDE N
Sbjct: 2160 RIYICDGDNDCLDNSDEDN 2178

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198471567|ref|XP_001355664.2| GA11430 [Drosophila pseudoobscura pseudoobscura] gi|198145975|gb|EAL32723.2| GA11430 [Drosophila pseudoobscura pseudoobscura]

 Score =  283 bits (725), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 194/361 (53%), Positives = 227/361 (62%), Gaps = 43/361 (11%)

Query: 10   VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
            +L++ATIYPFAITV RNYIYWTDLQLRGVYRAEKHTGANM+EMVKRLEDSPRDI +YSAD
Sbjct: 2488 LLVAATIYPFAITVFRNYIYWTDLQLRGVYRAEKHTGANMVEMVKRLEDSPRDIRIYSAD 2547

Query: 70   SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR 129
             QKC VNPC I+NGGCAQSCHP PNG AECKCD++TK+VNEGRMC  +N TC+ SKF+C+
Sbjct: 2548 RQKCDVNPCRINNGGCAQSCHPAPNGKAECKCDDNTKVVNEGRMCAPRNNTCEASKFYCQ 2607

Query: 130  NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI---------- 179
            NG+CISRMWSCDGDDDCGDNSDEDPNYC       S  P E        I          
Sbjct: 2608 NGRCISRMWSCDGDDDCGDNSDEDPNYCAYH----SCSPNEFRCNNGRCIFKSWKCDHEN 2663

Query: 180  --------TGVSQPP----------GIVMVMTTVQTGLMNHPNNRKCDEETE-----FTC 216
                     G + PP          G  +    V  G+ +  +N   DE  E      TC
Sbjct: 2664 DCKDGSDELGCTYPPCVDGEFTCGNGRCIPQAQVCNGVNDCKDNATSDETHERCPMNTTC 2723

Query: 217  TEN--KAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINT 274
              N  K      C+   WLCDGD DC D +DE+   L+C  Q +C  + F C N RCI  
Sbjct: 2724 PANHLKCEKTNICVEPYWLCDGDNDCGDNSDED--PLHC-GQRTCPTNSFRCPNHRCIPA 2780

Query: 275  GWLCDHDNDCGDGSDEGKE-CHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEF 333
             W CD D+DCGDG+DE  + C  + RTC  + F C N  CI + Y CDG++DC D SDE 
Sbjct: 2781 TWYCDGDDDCGDGADEPPDYCKSEGRTCFGDLFTCDNGNCIPRIYICDGDNDCLDNSDED 2840

Query: 334  N 334
            N
Sbjct: 2841 N 2841

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
FB|FBgn0261260	4769	mgl "Megalin" [Drosophila mela	0.391	0.027	0.757	1.2e-121
UNIPROTKB|F1NJS9	4644	LRP2 "Uncharacterized protein"	0.353	0.025	0.5	8.9e-60
UNIPROTKB|F1NCT2	4645	LRP2 "Uncharacterized protein"	0.353	0.025	0.5	8.9e-60
ZFIN|ZDB-GENE-050119-2	4673	lrp2a "low density lipoprotein	0.878	0.063	0.337	6.4e-38
UNIPROTKB|F1PIB4	4549	LRP2 "Uncharacterized protein"	0.364	0.027	0.484	3.3e-54
UNIPROTKB|P98164	4655	LRP2 "Low-density lipoprotein	0.391	0.028	0.438	3.9e-53
UNIPROTKB|F1N6H1	4626	LRP2 "Uncharacterized protein"	0.400	0.029	0.455	5.5e-52
UNIPROTKB|K7GS03	1602	LOC100514839 "Uncharacterized	0.362	0.076	0.459	6.3e-50
MGI|MGI:96828	4545	Lrp1 "low density lipoprotein	0.305	0.022	0.523	1.1e-47
UNIPROTKB|G3V928	4545	Lrp1 "Protein Lrp1" [Rattus no	0.305	0.022	0.514	2.9e-47

FB|FBgn0261260 mgl "Megalin" [Drosophila melanogaster (taxid:7227)]

 Score = 628 (226.1 bits), Expect = 1.2e-121, Sum P(2) = 1.2e-121
 Identities = 100/132 (75%), Positives = 110/132 (83%)

Query:   204 NNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQ 263
             N+RKCDEETEFTC ENK+W RAQCIPKKW+CDGDPDCVDGADENTT  NC  Q  C  D 
Sbjct:  3073 NDRKCDEETEFTCVENKSWQRAQCIPKKWICDGDPDCVDGADENTTLHNCATQQPCGEDM 3132

Query:   264 FSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGE 323
             F+CGNGRCIN GW+CDHDNDCGDG+DEGK C+ KY+TCS++EF CQNFKCIR    CDGE
Sbjct:  3133 FTCGNGRCINKGWICDHDNDCGDGTDEGKFCNSKYKTCSAQEFTCQNFKCIRNQSRCDGE 3192

Query:   324 DDCGDRSDEFNC 335
             DDCGD SDE  C
Sbjct:  3193 DDCGDHSDEVGC 3204

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IMP

UNIPROTKB|F1NJS9 LRP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 8.9e-60, Sum P(2) = 8.9e-60
 Identities = 64/128 (50%), Positives = 82/128 (64%)

Query:   205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQF 264
             NR C   TEFTC  N+   R +CIP+ W+CDGD DC D  DE+    NC ++S C+ ++F
Sbjct:  2930 NRSCTA-TEFTCANNRPPLR-RCIPRAWVCDGDADCSDALDEHQ---NCTRRS-CTENEF 2983

Query:   265 SCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGED 324
             +C NG CI + + CD  NDCGD SDE + C   Y  C   +F CQN +CI K Y CDG++
Sbjct:  2984 TCNNGLCIRSAYRCDRRNDCGDASDE-RGCI--YEPCQQHQFTCQNGRCISKAYICDGDN 3040

Query:   325 DCGDRSDE 332
             DCGD SDE
Sbjct:  3041 DCGDESDE 3048

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NCT2 LRP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 351 (128.6 bits), Expect = 8.9e-60, Sum P(2) = 8.9e-60
 Identities = 64/128 (50%), Positives = 82/128 (64%)

Query:   205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQF 264
             NR C   TEFTC  N+   R +CIP+ W+CDGD DC D  DE+    NC ++S C+ ++F
Sbjct:  2930 NRSCTA-TEFTCANNRPPLR-RCIPRAWVCDGDADCSDALDEHQ---NCTRRS-CTENEF 2983

Query:   265 SCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGED 324
             +C NG CI + + CD  NDCGD SDE + C   Y  C   +F CQN +CI K Y CDG++
Sbjct:  2984 TCNNGLCIRSAYRCDRRNDCGDASDE-RGCI--YEPCQQHQFTCQNGRCISKAYICDGDN 3040

Query:   325 DCGDRSDE 332
             DCGD SDE
Sbjct:  3041 DCGDESDE 3048

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0006766 "vitamin metabolic process" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

ZFIN|ZDB-GENE-050119-2 lrp2a "low density lipoprotein receptor-related protein 2a" [Danio rerio (taxid:7955)]

 Score = 415 (151.1 bits), Expect = 6.4e-38, Sum P(2) = 6.4e-38
 Identities = 111/329 (33%), Positives = 156/329 (47%)

Query:    17 YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
             +PFAITV  + +YWTD   R V +  K+ G+   EM+      P DIHV     Q    N
Sbjct:  3426 HPFAITVFEDTLYWTDWNTRTVEKGNKYNGSGR-EMLVNTTHRPFDIHVCHPYRQPIVTN 3484

Query:    77 PCNIHNGGCAQSC--HPGPNGTAECKCDESTKLVNEGRMCVAKNIT-CDGSKFFCR-NGK 132
             PC ++NGGC+  C    G  G   C+C +    V      VA+ +  C  +++ C  N +
Sbjct:  3485 PCALNNGGCSHLCLLRAGGQGYT-CECPDHFLTVQIAG--VARCLPMCSSTQYRCADNER 3541

Query:   133 CISRMWXXXXXXXXXXXXXXXPNYCNVQITGVSQ---PPGELGVPGHVQITGVSQPPGIV 189
             CI  +W               P+ C V+   + Q     G    P  +  +    P G  
Sbjct:  3542 CIP-IWWKCDGQRDCRDGSDEPSTCPVRHCRLGQFQCNDGNCTSPHFLCNSNQDCPDG-- 3598

Query:   190 MVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTT 249
                +   T L       +C E  ++ C  NK     +CI + W CDG+ DC DG+DE+  
Sbjct:  3599 ---SDEDTVLCA---THQC-ESHQWQCA-NK-----RCISEAWQCDGENDCGDGSDEDPA 3645

Query:   250 ALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG-KECHDK-YRTCSSEEFA 307
               +C  ++ C P QF C NGRCI   W CD D+DCGD SDE  +EC    YR  +  EF 
Sbjct:  3646 --HCSSRT-CRPGQFKCRNGRCIPNTWKCDVDDDCGDNSDEPIEECMGPAYRCDNHTEFD 3702

Query:   308 CQ-NFKCIRKTYHCDGEDDCGDRSDEFNC 335
             C+ N++C+     C+G +DC D SDE NC
Sbjct:  3703 CRTNYRCVPLWAVCNGHNDCRDNSDEQNC 3731

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0070293 "renal absorption" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PIB4 LRP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 332 (121.9 bits), Expect = 3.3e-54, Sum P(2) = 3.3e-54
 Identities = 64/132 (48%), Positives = 80/132 (60%)

Query:   201 NHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCS 260
             +H  +  C   +EF C  N   +R +CIPK W+CDGD DC DG DE+    NC ++S CS
Sbjct:  2914 HHCESHNCSS-SEFLCANNVPPSR-KCIPKSWVCDGDADCTDGYDEHQ---NCTRRS-CS 2967

Query:   261 PDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHC 320
              + F+C NG C+   + CD  NDCGD SDE + C   Y TCS  +F CQN  CI K   C
Sbjct:  2968 GNDFTCSNGLCVPHSYRCDRRNDCGDYSDE-RNC--SYSTCSENQFTCQNGLCIYKQDVC 3024

Query:   321 DGEDDCGDRSDE 332
             DGE+DC D SDE
Sbjct:  3025 DGENDCRDGSDE 3036

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|P98164 LRP2 "Low-density lipoprotein receptor-related protein 2" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 3.9e-53, Sum P(2) = 3.9e-53
 Identities = 61/139 (43%), Positives = 78/139 (56%)

Query:   198 GLMNHPNNRKCDEET--EFTCTEN--KAWNRAQCIPKKWLCDGDPDCVDGADENTTALNC 253
             G+ N  +N   DE+   + TC     K  N   CIP+ +LCDGD DC D +DEN T   C
Sbjct:  2802 GVDNCHDNNTSDEKNCPDRTCQSGYTKCHNSNICIPRVYLCDGDNDCGDNSDENPTY--C 2859

Query:   254 PKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKC 313
                + CS  +F C +GRCI   W CD + DC D SDE   C    RTC ++EF C   +C
Sbjct:  2860 TTHT-CSSSEFQCASGRCIPQHWYCDQETDCFDASDEPASCGHSERTCLADEFKCDGGRC 2918

Query:   314 IRKTYHCDGEDDCGDRSDE 332
             I   + CDG++DCGD SDE
Sbjct:  2919 IPSEWICDGDNDCGDMSDE 2937

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031526 "brush border membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016324 "apical plasma membrane" evidence=ISS

GO:0005764 "lysosome" evidence=TAS

GO:0006486 "protein glycosylation" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0006897 "endocytosis" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0008202 "steroid metabolic process" evidence=TAS

GO:0042359 "vitamin D metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1N6H1 LRP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 324 (119.1 bits), Expect = 5.5e-52, Sum P(2) = 5.5e-52
 Identities = 66/145 (45%), Positives = 82/145 (56%)

Query:   198 GLMNHPNNRKCDEET--EFTCTEN--KAWNRAQCIPKKWLCDGDPDCVDGADENTTALNC 253
             G+ N  +N   DE+   E TC     K  N   CIP+ +LCDGD DC D +DEN   L C
Sbjct:  2773 GVDNCLDNSASDEKNCPERTCHTGYVKCTNSTICIPRSFLCDGDNDCGDMSDENP--LFC 2830

Query:   254 PKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKC 313
               +S C  D+F C +G CI   W CDH+ DC DGSDE   C     TC+S+ F C N +C
Sbjct:  2831 ATRS-CGSDEFHCTSGPCIPARWYCDHEKDCSDGSDEPPTCEFSQSTCASDYFKCDNNRC 2889

Query:   314 IRKTYHCDGEDDCGDRSDE---FNC 335
             I   + CDG++DCGD SDE    NC
Sbjct:  2890 IPMMWVCDGDNDCGDMSDEDERHNC 2914

GO:0031526 "brush border membrane" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0006766 "vitamin metabolic process" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|K7GS03 LOC100514839 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 319 (117.4 bits), Expect = 6.3e-50, Sum P(2) = 6.3e-50
 Identities = 63/137 (45%), Positives = 84/137 (61%)

Query:   204 NNRKCDEET----EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSC 259
             + R C E T    +F C+  K     +CIP+ W+CD D DCVDG+DE     NC  Q +C
Sbjct:   502 DERDCPEVTCAPNQFQCSITK-----RCIPRVWVCDRDNDCVDGSDEPA---NCT-QMTC 552

Query:   260 SPDQFSC-GNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTY 318
               D+F C  +GRCI   W CD ++DCGDGSDE KE  D+ RTC   +F C+N +C+   +
Sbjct:   553 GVDEFRCKDSGRCIPARWKCDGEDDCGDGSDEPKEECDE-RTCEPYQFRCKNNRCVPGRW 611

Query:   319 HCDGEDDCGDRSDEFNC 335
              CD ++DCGD SDE +C
Sbjct:   612 QCDYDNDCGDNSDEESC 628

GO:0016021 "integral to membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:96828 Lrp1 "low density lipoprotein receptor-related protein 1" [Mus musculus (taxid:10090)]

 Score = 327 (120.2 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
 Identities = 56/107 (52%), Positives = 70/107 (65%)

Query:   227 CIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGD 286
             C+P++WLCDGD DC DGADE+ TA  C   S+C   +F C N  CI   ++CDHD DC D
Sbjct:  2788 CVPERWLCDGDKDCTDGADESVTA-GCLYNSTCDDREFMCQNRLCIPKHFVCDHDRDCAD 2846

Query:   287 GSDEGKECHDKYRTCSSEEFACQNFKCIR-KTYHCDGEDDCGDRSDE 332
             GSDE  EC  +Y TC   EF C N +C+  + + CDGE+DC D SDE
Sbjct:  2847 GSDESPEC--EYPTCGPNEFRCANGRCLSSRQWECDGENDCHDHSDE 2891

GO:0002020 "protease binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0005905 "coated pit" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO;IDA

GO:0007205 "protein kinase C-activating G-protein coupled receptor signaling pathway" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IMP

GO:0008283 "cell proliferation" evidence=ISO

GO:0010875 "positive regulation of cholesterol efflux" evidence=IMP

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IDA

GO:0030425 "dendrite" evidence=ISO

GO:0032370 "positive regulation of lipid transport" evidence=IMP

GO:0032374 "regulation of cholesterol transport" evidence=IMP

GO:0032403 "protein complex binding" evidence=ISO

GO:0032429 "regulation of phospholipase A2 activity" evidence=IMP

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IMP

GO:0034185 "apolipoprotein binding" evidence=ISO

GO:0035909 "aorta morphogenesis" evidence=IMP

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043277 "apoptotic cell clearance" evidence=IMP

GO:0043524 "negative regulation of neuron apoptotic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051222 "positive regulation of protein transport" evidence=ISO

GO:0097242 "beta-amyloid clearance" evidence=IMP

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IMP

UNIPROTKB|G3V928 Lrp1 "Protein Lrp1" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 2.9e-47, Sum P(2) = 2.9e-47
 Identities = 55/107 (51%), Positives = 70/107 (65%)

Query:   227 CIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGD 286
             C+P++WLCDGD DC DGADE+ +A  C   S+C   +F C N  CI   ++CDHD DC D
Sbjct:  2788 CVPERWLCDGDKDCADGADESISA-GCLYNSTCDDREFMCQNRLCIPKHFVCDHDRDCAD 2846

Query:   287 GSDEGKECHDKYRTCSSEEFACQNFKCIR-KTYHCDGEDDCGDRSDE 332
             GSDE  EC  +Y TC   EF C N +C+  + + CDGE+DC D SDE
Sbjct:  2847 GSDESPEC--EYPTCGPNEFRCANGRCLSSRQWECDGENDCHDHSDE 2891

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0032429 "regulation of phospholipase A2 activity" evidence=IEA

GO:0032956 "regulation of actin cytoskeleton organization" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0035909 "aorta morphogenesis" evidence=IEA

GO:0043277 "apoptotic cell clearance" evidence=IEA

GO:0097242 "beta-amyloid clearance" evidence=IEA

GO:2000587 "negative regulation of platelet-derived growth factor receptor-beta signaling pathway" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	337
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	5e-10
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	3e-09
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	4e-09
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	1e-08
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	2e-08
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	5e-08
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	8e-08
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	6e-07
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	1e-06
cd00112	35	cd00112, LDLa, Low Density Lipoprotein Receptor Cl	1e-04
pfam00057	37	pfam00057, Ldl_recept_a, Low-density lipoprotein r	2e-04
smart00192	33	smart00192, LDLa, Low-density lipoprotein receptor	6e-04

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 53.7 bits (130), Expect = 5e-10
 Identities = 20/32 (62%), Positives = 26/32 (81%)

Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
           C P++F C NGRCI + W+CD ++DCGDGSDE
Sbjct: 1   CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDE 32

Length = 35

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 51.5 bits (124), Expect = 3e-09
 Identities = 20/32 (62%), Positives = 24/32 (75%)

Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
           C P +F C NGRCI + W+CD  +DCGDGSDE
Sbjct: 2   CPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 51.4 bits (124), Expect = 4e-09
 Identities = 21/35 (60%), Positives = 24/35 (68%)

Query: 301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           C   EF C N +CI  ++ CDGEDDCGD SDE NC
Sbjct: 1   CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 21/34 (61%), Positives = 25/34 (73%)

Query: 257 SSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
           S+C PD+F CG+G CI   W+CD D DC DGSDE
Sbjct: 1   STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDE 34

Length = 37

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 121 CDGSKFFCRNGKCISRMWSCDGDDDCGDNSDED 153
           C  ++F C NG+CI   W CDG+DDCGD SDE+
Sbjct: 1   CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEE 33

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDED 153
           TC   +F C +G+CI   W CDGD DC D SDE 
Sbjct: 2   TCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEK 35

Length = 37

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 47.2 bits (113), Expect = 8e-08
 Identities = 20/33 (60%), Positives = 22/33 (66%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDE 152
           TC   +F C NG+CI   W CDG DDCGD SDE
Sbjct: 1   TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 19/33 (57%), Positives = 22/33 (66%)

Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE 332
           TC   EF C N +CI  ++ CDG DDCGD SDE
Sbjct: 1   TCPPGEFQCDNGRCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
            TC  +EF C + +CI  ++ CDG+ DC D SDE NC
Sbjct: 1   STCGPDEFQCGSGECIPMSWVCDGDPDCEDGSDEKNC 37

Length = 37

>gnl|CDD|238060 cd00112, LDLa, Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

 Score = 38.3 bits (90), Expect = 1e-04
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 6/37 (16%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
             EF C         +CIP  W+CDG+ DC DG+DE 
Sbjct: 3   PNEFRCANG------RCIPSSWVCDGEDDCGDGSDEE 33

Length = 35

>gnl|CDD|200964 pfam00057, Ldl_recept_a, Low-density lipoprotein receptor domain class A

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 6/36 (16%)

Query: 213 EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENT 248
           EF C         +CIP  W+CDGDPDC DG+DE  
Sbjct: 7   EFQCGSG------ECIPMSWVCDGDPDCEDGSDEKN 36

Length = 37

>gnl|CDD|197566 smart00192, LDLa, Low-density lipoprotein receptor domain class A

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 6/36 (16%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
             EF C         +CIP  W+CDG  DC DG+DE
Sbjct: 4   PGEFQCDNG------RCIPSSWVCDGVDDCGDGSDE 33

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG1215|consensus	877		99.84
KOG1214|consensus	1289		99.68
KOG1215|consensus	877		99.38
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.19
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.16
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.15
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.11
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	99.07
smart00192	33	LDLa Low-density lipoprotein receptor domain class	99.04
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.82
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.78
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	98.54
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	98.25
KOG1214|consensus	1289		98.2
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.71
KOG2397|consensus	480		97.55
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	96.79
PF12662	24	cEGF: Complement Clr-like EGF-like	96.73
KOG3509|consensus	964		96.67
KOG2397|consensus	480		96.52
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	95.34
KOG3509|consensus	964		93.05
smart00181	35	EGF Epidermal growth factor-like domain.	93.03
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	92.68
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	92.53
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	90.4
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	90.12
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	88.24
cd00053	36	EGF Epidermal growth factor domain, found in epide	85.35
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	81.62
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	80.5

>KOG1215|consensus

Probab=99.84  E-value=6e-21  Score=203.21  Aligned_cols=215  Identities=37%  Similarity=0.711  Sum_probs=170.8

Q ss_pred             EEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCccccCCCCCcCC-CCCccccccCCCCCcCe
Q psy954           20 AITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCNIH-NGGCAQSCHPGPNGTAE   98 (337)
Q Consensus        20 ~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~~~npC~~~-nggCs~lCl~~~~~~~~   98 (337)
                      +|++|+++|||+|   +.|.+++|.+|....++...... |+.|+++++..++...++|..+ +++|+|           
T Consensus        73 ~l~~~~~~~y~~d---~~v~~~~~~sg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  137 (877)
T KOG1215|consen   73 ALTLFEDGLYWTD---KSVSAANKKTGKDVTRLSQDSHF-PLDIHAYHPSSQPLAPDPCAESGNGPCSH-----------  137 (877)
T ss_pred             eeeeeccceeecc---chhhhhccCCCCcceeehhcCCC-CcceeEEecCCCCCCCCcccccCCCCCcc-----------
Confidence            9999999999999   78999999999999988877755 9999999999888877887763 223333           


Q ss_pred             ecCCCCcccccCCcccccCCCCCCCCccccC--CCceeCCccccCCCCCCCCCCCCCCCccCCcccCCCCCCCCcccCCC
Q psy954           99 CKCDESTKLVNEGRMCVAKNITCDGSKFFCR--NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGH  176 (337)
Q Consensus        99 C~Cp~g~~L~~~~~~C~~~~~~C~~~~f~C~--~g~CI~~~~~CDG~~DC~DgsDE~~~~C~~~~c~c~~~~~~~~~~~~  176 (337)
                                            |...+|.|.  +++||+..|+|||..||+||+||..  |....+.             
T Consensus       138 ----------------------~~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~--~~~~~~~-------------  180 (877)
T KOG1215|consen  138 ----------------------CCLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELN--CAVRRCE-------------  180 (877)
T ss_pred             ----------------------ccCCCCCCcCccccCCCCceeCCCCCccccchhhhc--ccccccC-------------
Confidence                                  333446666  7899999999999999999999986  2211000             


Q ss_pred             ccccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCceeeCCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCCC
Q psy954          177 VQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQ  256 (337)
Q Consensus       177 ~C~~~~~~~~~~C~~~~~C~~~~d~~c~~~~C~~~~~f~C~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~~  256 (337)
                                                     +.... |           +||...|+||+..+|.+++||    ..+.. 
T Consensus       181 -------------------------------~~~~~-~-----------~~~~~~~~~d~~~~~~~~~d~----~~~~~-  212 (877)
T KOG1215|consen  181 -------------------------------PRGAS-L-----------DCIVAIKVCDIQHDCADDYDE----SEGRI-  212 (877)
T ss_pred             -------------------------------ccccc-c-----------ccceeeeecCccccccccccc----ccCcc-
Confidence                                           00000 2           448889999999999999999    34432 


Q ss_pred             CCCC---CCcEEeeC-CceecCCCcCCCCCCCCCCCCCC-CCCCCCCCCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCC
Q psy954          257 SSCS---PDQFSCGN-GRCINTGWLCDHDNDCGDGSDEG-KECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSD  331 (337)
Q Consensus       257 ~~C~---~~~f~C~~-g~Ci~~~~~CDg~~dC~d~sDE~-~~C~~~~~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsD  331 (337)
                      ..+.   ...++|.. .+||...|.|||..||.+++||. .++.  ...|...++.|.++.|++..++|||..||+||+|
T Consensus       213 ~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~d  290 (877)
T KOG1215|consen  213 YWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCS--DATCEAPEIECADGDCSDRQKLCDGDLDCPDGLD  290 (877)
T ss_pred             cccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEee--ccccCCcceeecCCCCccceEEecCccCCCCccc
Confidence            2232   57889987 59999999999999999999994 3454  4567778999999999999999999999999999


Q ss_pred             CCCCC
Q psy954          332 EFNCN  336 (337)
Q Consensus       332 E~~C~  336 (337)
                      |..|.
T Consensus       291 e~~~~  295 (877)
T KOG1215|consen  291 EDYCK  295 (877)
T ss_pred             ccccc
Confidence            98775

>KOG1214|consensus

Probab=99.68  E-value=2.5e-17  Score=164.20  Aligned_cols=104  Identities=31%  Similarity=0.517  Sum_probs=94.1

Q ss_pred             CccCCCceEEEEcCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCccccCCCCCcC
Q psy954            1 MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCNI   80 (337)
Q Consensus         1 ~~~dG~~R~vl~~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~~~npC~~   80 (337)
                      +.++|+.|++|+++|++||+|+.+++.+|||||+.++|..++|+.++.+...+.....+++||+++.+.....+ +||+.
T Consensus      1183 ~~p~g~gRR~i~~~LqYPF~itsy~~~fY~TDWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~~~Cp~gs-tpCSe 1261 (1289)
T KOG1214|consen 1183 TLPDGTGRRVIQNNLQYPFSITSYADHFYHTDWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVYPYCPTGS-TPCSE 1261 (1289)
T ss_pred             ecCCCCcchhhhhcccCceeeeeccccceeeccccCceEEeeccccccccccccccccceEEEEeccccCCCCC-Ccccc
Confidence            46899999999999999999999999999999999999999999998887777666677999999988766655 99999


Q ss_pred             CCCCccccccCCCCCcCeecCCCCcc
Q psy954           81 HNGGCAQSCHPGPNGTAECKCDESTK  106 (337)
Q Consensus        81 ~nggCs~lCl~~~~~~~~C~Cp~g~~  106 (337)
                      +||||.||||++-++ +.|.||++.+
T Consensus      1262 dNGGCqHLCLpgqng-avcecpdnvk 1286 (1289)
T KOG1214|consen 1262 DNGGCQHLCLPGQNG-AVCECPDNVK 1286 (1289)
T ss_pred             cCCcceeecccCcCC-ccccCCccce
Confidence            999999999998888 8999998854

>KOG1215|consensus

Probab=99.38  E-value=1.5e-12  Score=139.07  Aligned_cols=114  Identities=35%  Similarity=0.696  Sum_probs=94.9

Q ss_pred             CccCCCceEEEE-cCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceee-ccCccccCCCCC
Q psy954            1 MRIATGASMVLI-SATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVY-SADSQKCSVNPC   78 (337)
Q Consensus         1 ~~~dG~~R~vl~-~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~-~~~~q~~~~npC   78 (337)
                      +.++|.+|+++. ..+.|||+|++|+++|||+||....+.++.|..+.....+... ...+..++++ +...++-..|+|
T Consensus       595 ~~~~g~~r~~~~~~~~~~p~~~~~~~~~iyw~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~C  673 (877)
T KOG1215|consen  595 ANMDGQNRRVVDSEDLPHPFGLSVFEDYIYWTDWSNRAISRAEKHKGSDSRTSRSN-LAQPLDIILVHHSSSRPTGVNPC  673 (877)
T ss_pred             eecCCCceEEeccccCCCceEEEEecceeEEeeccccceEeeecccCCcceeeecc-cCcccceEEEeccccCCCCCCcc
Confidence            368999998433 6789999999999999999999999999999988762123333 3567777777 555566677999


Q ss_pred             cCCCCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           79 NIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        79 ~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      ..+||+|++||++.|.+. +|+||.|+.|..+++.|.+
T Consensus       674 ~~~n~~c~~KOG~~p~~~-~c~c~~~~~l~~~~~~C~~  710 (877)
T KOG1215|consen  674 ESSNGGCSQLCLPRPQGS-TCACPEGYRLSPDGKSCSS  710 (877)
T ss_pred             cccCCCCCeeeecCCCCC-eeeCCCCCeecCCCCeecC
Confidence            999999999999999885 9999999999999999987

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.19  E-value=1.3e-11  Score=78.87  Aligned_cols=35  Identities=51%  Similarity=1.126  Sum_probs=33.2

Q ss_pred             CCCCCccccCCCceeCCccccCCCCCCCCCCCCCC
Q psy954          120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       120 ~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      +|.+++|+|.+++||+..|+|||++||.|||||.+
T Consensus         2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~   36 (37)
T PF00057_consen    2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQN   36 (37)
T ss_dssp             SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSS
T ss_pred             cCcCCeeEcCCCCEEChHHcCCCCCCCCCCccccc
Confidence            58899999999999999999999999999999964

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.16  E-value=2e-11  Score=77.95  Aligned_cols=36  Identities=56%  Similarity=1.081  Sum_probs=34.2

Q ss_pred             CCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       300 ~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      .|...+|+|.++.||+..|+|||+.||.|||||.+|
T Consensus         2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C   37 (37)
T PF00057_consen    2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC   37 (37)
T ss_dssp             SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred             cCcCCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence            578899999999999999999999999999999886

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.15  E-value=1.6e-11  Score=77.48  Aligned_cols=34  Identities=56%  Similarity=1.341  Sum_probs=31.8

Q ss_pred             CCCCccccCCCceeCCccccCCCCCCCCCCCCCC
Q psy954          121 CDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       121 C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      |.+.+|+|.+++||+..|+|||++||+|||||..
T Consensus         1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~   34 (35)
T cd00112           1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEEN   34 (35)
T ss_pred             CCCCeEEcCCCCeeCHHHcCCCccCCCCCccccc
Confidence            5678999999999999999999999999999974

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.11  E-value=4.2e-11  Score=75.60  Aligned_cols=35  Identities=60%  Similarity=1.271  Sum_probs=32.8

Q ss_pred             CCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       301 C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      |++.+|+|.++.||+..++|||+.||+|||||.+|
T Consensus         1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C   35 (35)
T cd00112           1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC   35 (35)
T ss_pred             CCCCeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence            45689999999999999999999999999999987

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=99.07  E-value=2.5e-11  Score=76.74  Aligned_cols=36  Identities=39%  Similarity=1.048  Sum_probs=31.4

Q ss_pred             CcCCCCCccccccCCCCCcCeecCCCCcccccCCccc
Q psy954           78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC  114 (337)
Q Consensus        78 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C  114 (337)
                      |+.+||||+|+|++.+.+ ++|+||.||+|.+|+++|
T Consensus         1 C~~~NGgC~h~C~~~~g~-~~C~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen    1 CSVNNGGCSHICVNTPGS-YRCSCPPGYKLAEDGRTC   36 (36)
T ss_dssp             CTTGGGGSSSEEEEETTS-EEEE-STTEEE-TTSSSE
T ss_pred             CCCCCCCcCCCCccCCCc-eEeECCCCCEECcCCCCC
Confidence            677899999999999877 999999999999999987

...

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=99.04  E-value=1.3e-10  Score=72.36  Aligned_cols=32  Identities=56%  Similarity=1.267  Sum_probs=30.3

Q ss_pred             CCCCccccCCCceeCCccccCCCCCCCCCCCC
Q psy954          121 CDGSKFFCRNGKCISRMWSCDGDDDCGDNSDE  152 (337)
Q Consensus       121 C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE  152 (337)
                      |...+|+|.+++||+..|+|||++||+|+|||
T Consensus         2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence            66679999999999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.82  E-value=3.3e-09  Score=66.05  Aligned_cols=32  Identities=53%  Similarity=1.125  Sum_probs=29.9

Q ss_pred             CCCCcEEcCCCCeecCCCCCCCcCCCCCCCCC
Q psy954          301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE  332 (337)
Q Consensus       301 C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE  332 (337)
                      |...+|+|.++.||+..++|||+.||+|||||
T Consensus         2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence            55569999999999999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.78  E-value=5.6e-09  Score=89.19  Aligned_cols=65  Identities=43%  Similarity=0.716  Sum_probs=56.8

Q ss_pred             eeeCCCCCCCCCee-ecCCCcccCCCCCCCCCccccccCCCCCCCCCCCCcEEeeCC----ceecCCCcCCCCCC---CC
Q psy954          214 FTCTENKAWNRAQC-IPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNG----RCINTGWLCDHDND---CG  285 (337)
Q Consensus       214 f~C~~~~~~~~~~C-i~~~~~CDg~~dC~dgsDE~~~~~~C~~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~d---C~  285 (337)
                      |+|.++.     .= |+.+++.|+.-||+|||||..       ...|+.+.|+|.|.    .-||..+|-||+-|   |=
T Consensus        38 f~Cl~~~-----~~~I~~~~iNDdyCDC~DGSDEPG-------TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CC  105 (176)
T PF12999_consen   38 FTCLDGS-----KIVIPFSQINDDYCDCPDGSDEPG-------TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICC  105 (176)
T ss_pred             eEecCCC-----CceecHHHccCcceeCCCCCCccc-------cccCcCceEeeccCCCCCceeehhhhcCCcCcccccC
Confidence            9999884     44 999999999999999999942       24677789999874    68999999999999   99


Q ss_pred             CCCCC
Q psy954          286 DGSDE  290 (337)
Q Consensus       286 d~sDE  290 (337)
                      |||||
T Consensus       106 DGSDE  110 (176)
T PF12999_consen  106 DGSDE  110 (176)
T ss_pred             CCCCC
Confidence            99999

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=98.54  E-value=8.5e-08  Score=81.97  Aligned_cols=67  Identities=39%  Similarity=0.634  Sum_probs=57.3

Q ss_pred             CCcEEeeCCc-e-ecCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEcCCC----CeecCCCCCCCcCC---CCCCCC
Q psy954          261 PDQFSCGNGR-C-INTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF----KCIRKTYHCDGEDD---CGDRSD  331 (337)
Q Consensus       261 ~~~f~C~~g~-C-i~~~~~CDg~~dC~d~sDE~~~C~~~~~~C~~~~f~C~~~----~Ci~~~~~CDg~~d---C~dgsD  331 (337)
                      .+.|+|-++. - |+..++.|+.-||+||||| ++-    ..|+...|+|.|.    .-||.++|=||+=|   |=||||
T Consensus        35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDE-PGT----sAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSD  109 (176)
T PF12999_consen   35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDE-PGT----SACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSD  109 (176)
T ss_pred             CCceEecCCCCceecHHHccCcceeCCCCCCc-ccc----ccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCC
Confidence            4679998663 4 8999999999999999999 542    3577789999975    57999999999999   999999


Q ss_pred             C
Q psy954          332 E  332 (337)
Q Consensus       332 E  332 (337)
                      |
T Consensus       110 E  110 (176)
T PF12999_consen  110 E  110 (176)
T ss_pred             C
Confidence            9

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=98.25  E-value=2.4e-06  Score=56.13  Aligned_cols=40  Identities=30%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             CEEEEEeCCCC-ceEEEecccCCceEEEeecccCCCccceee
Q psy954           26 NYIYWTDLQLR-GVYRAEKHTGANMIEMVKRLEDSPRDIHVY   66 (337)
Q Consensus        26 d~IYWtDw~~~-~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~   66 (337)
                      ++||||||... +|++++. +|+.+++++......|.+|+|.
T Consensus         1 ~~iYWtD~~~~~~I~~a~~-dGs~~~~vi~~~l~~P~giaVD   41 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANL-DGSNRRTVISDDLQHPEGIAVD   41 (42)
T ss_dssp             TEEEEEETTTTEEEEEEET-TSTSEEEEEESSTSSEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEEC-CCCCeEEEEECCCCCcCEEEEC
Confidence            58999999999 8888776 5666666666555889999985

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG1214|consensus

Probab=98.20  E-value=2.5e-06  Score=86.77  Aligned_cols=65  Identities=22%  Similarity=0.335  Sum_probs=54.3

Q ss_pred             ccCCCceEEEE-cCCCCceEEEEE--CCEEEEEeCCCC--ceEEEecccCCceEEEeecccCCCccceeec
Q psy954            2 RIATGASMVLI-SATIYPFAITVH--RNYIYWTDLQLR--GVYRAEKHTGANMIEMVKRLEDSPRDIHVYS   67 (337)
Q Consensus         2 ~~dG~~R~vl~-~~~~~Pf~Lav~--~d~IYWtDw~~~--~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~   67 (337)
                      .|||+.|++|+ ..|.+|.+|++.  +..||||||...  +|++++. +|.++.+++..-...|.||++..
T Consensus      1096 ~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~m-DG~NrRilin~DigLPNGLtfdp 1165 (1289)
T KOG1214|consen 1096 LLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSM-DGENRRILINTDIGLPNGLTFDP 1165 (1289)
T ss_pred             ecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcceeecc-CCccceEEeecccCCCCCceeCc
Confidence            58999999999 789999999875  999999999876  7877765 77777777766557899999853

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.71  E-value=0.00012  Score=47.45  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=28.4

Q ss_pred             EEEEcCCCCc--eEEEEECCEEEEEeCCCCceEEEecc
Q psy954            9 MVLISATIYP--FAITVHRNYIYWTDLQLRGVYRAEKH   44 (337)
Q Consensus         9 ~vl~~~~~~P--f~Lav~~d~IYWtDw~~~~I~r~~k~   44 (337)
                      +++..++.+|  +++...+++|||+|+....|++++..
T Consensus         2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~   39 (43)
T smart00135        2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLD   39 (43)
T ss_pred             EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCC
Confidence            4455788899  55555699999999999999988764

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG2397|consensus

Probab=97.55  E-value=7.2e-05  Score=72.73  Aligned_cols=65  Identities=38%  Similarity=0.679  Sum_probs=57.6

Q ss_pred             eeeCCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCCCCCCCCCcEEeeCC----ceecCCCcCCCCCCCCCCCC
Q psy954          214 FTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNG----RCINTGWLCDHDNDCGDGSD  289 (337)
Q Consensus       214 f~C~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~dC~d~sD  289 (337)
                      |.|.++.     .-|+.+++-|..-||.|||||.       ....|+.+.|+|.|.    .-||...+-||+-||-||||
T Consensus        45 ~~CLdgs-----~~i~f~qlNDd~CDC~DGsDEP-------GtsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSD  112 (480)
T KOG2397|consen   45 FKCLDGS-----KTISFSQLNDDSCDCLDGSDEP-------GTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSD  112 (480)
T ss_pred             eeeccCC-----cccCHHHhccccccCCCCCCCC-------ccccCCCCceeeeecCCCceeeechhccCcccccccCCC
Confidence            9999885     8899999999999999999993       235688899999863    57888999999999999999


Q ss_pred             C
Q psy954          290 E  290 (337)
Q Consensus       290 E  290 (337)
                      |
T Consensus       113 E  113 (480)
T KOG2397|consen  113 E  113 (480)
T ss_pred             C
Confidence            9

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=96.79  E-value=0.0014  Score=42.84  Aligned_cols=24  Identities=17%  Similarity=0.174  Sum_probs=21.3

Q ss_pred             CccCCCceEEEE-cCCCCceEEEEE
Q psy954            1 MRIATGASMVLI-SATIYPFAITVH   24 (337)
Q Consensus         1 ~~~dG~~R~vl~-~~~~~Pf~Lav~   24 (337)
                      +++||++|++|+ +.+.+|+||||+
T Consensus        17 a~~dGs~~~~vi~~~l~~P~giaVD   41 (42)
T PF00058_consen   17 ANLDGSNRRTVISDDLQHPEGIAVD   41 (42)
T ss_dssp             EETTSTSEEEEEESSTSSEEEEEEE
T ss_pred             EECCCCCeEEEEECCCCCcCEEEEC
Confidence            368999999998 778999999996

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=96.73  E-value=0.00095  Score=38.07  Aligned_cols=22  Identities=27%  Similarity=0.652  Sum_probs=19.5

Q ss_pred             cCeecCCCCcccccCCcccccC
Q psy954           96 TAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        96 ~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      +++|.|+.||+|..++++|...
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DI   22 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDI   22 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccC
Confidence            3799999999999999999764

>KOG3509|consensus

Probab=96.67  E-value=0.0015  Score=69.28  Aligned_cols=105  Identities=39%  Similarity=0.932  Sum_probs=89.8

Q ss_pred             eeecCCCcccCCCCCCCCCccccccCCCCC-CCCCCCCcEEeeCCceecCCCcCCCCCCCCCCCCCCCCCCCC--CCCCC
Q psy954          226 QCIPKKWLCDGDPDCVDGADENTTALNCPK-QSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDK--YRTCS  302 (337)
Q Consensus       226 ~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~-~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~d~sDE~~~C~~~--~~~C~  302 (337)
                      .|......|++..|+.+.+|+    .+++. ...+.+.+|.|.++++....|.||....+..++++ .+|...  ...|.
T Consensus         2 ~c~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~   76 (964)
T KOG3509|consen    2 ECVKNRYACDRQPDCRDRSDV----ANDPAIGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTP-SGCNAKPSASDCK   76 (964)
T ss_pred             chhhhhhhhccchhhHhhccc----CCCccccccCCcchhccCCccccCchhhhccccccCCCCCc-CCccccccccccC
Confidence            567778899999999999999    56553 25678899999999999999999999999999987 776543  35677


Q ss_pred             CCcEEcCCC-CeecCCCCCCCcCCCCCCCCCCCC
Q psy954          303 SEEFACQNF-KCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       303 ~~~f~C~~~-~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      +.+++|.+- ++.+.+..|||.++|.++++|..+
T Consensus        77 ~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~~  110 (964)
T KOG3509|consen   77 PTETQCRDRLRCNPQSFQCDGTNDCKDGSDEVGC  110 (964)
T ss_pred             CcccccccchhcCCccccccCCCCCCccchhccc
Confidence            888999987 789999999999999999999754

>KOG2397|consensus

Probab=96.52  E-value=0.0024  Score=62.32  Aligned_cols=67  Identities=40%  Similarity=0.638  Sum_probs=55.7

Q ss_pred             cEEeeCC-ceecCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEcCCC----CeecCCCCCCCcCCCCCCCCCCC
Q psy954          263 QFSCGNG-RCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF----KCIRKTYHCDGEDDCGDRSDEFN  334 (337)
Q Consensus       263 ~f~C~~g-~Ci~~~~~CDg~~dC~d~sDE~~~C~~~~~~C~~~~f~C~~~----~Ci~~~~~CDg~~dC~dgsDE~~  334 (337)
                      .|.|-++ .-|+...+-|..-||.||+|| +.    ...|+.+.|+|.|.    .=|+.+.+=||+-||=|||||..
T Consensus        44 ~~~CLdgs~~i~f~qlNDd~CDC~DGsDE-PG----tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~  115 (480)
T KOG2397|consen   44 MFKCLDGSKTISFSQLNDDSCDCLDGSDE-PG----TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL  115 (480)
T ss_pred             ceeeccCCcccCHHHhccccccCCCCCCC-Cc----cccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence            6777655 467788899999999999999 43    34688899999863    35889999999999999999974

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=95.34  E-value=0.0072  Score=39.44  Aligned_cols=38  Identities=21%  Similarity=0.620  Sum_probs=27.0

Q ss_pred             CCCcCCCCCcc--ccccCCCCCcCeecCCCCcccccCCccc
Q psy954           76 NPCNIHNGGCA--QSCHPGPNGTAECKCDESTKLVNEGRMC  114 (337)
Q Consensus        76 npC~~~nggCs--~lCl~~~~~~~~C~Cp~g~~L~~~~~~C  114 (337)
                      +.|+.....|.  ..|+.+.++ |+|.|+.||.+..++++|
T Consensus         3 dEC~~~~~~C~~~~~C~N~~Gs-y~C~C~~Gy~~~~~~~~C   42 (42)
T PF07645_consen    3 DECAEGPHNCPENGTCVNTEGS-YSCSCPPGYELNDDGTTC   42 (42)
T ss_dssp             STTTTTSSSSSTTSEEEEETTE-EEEEESTTEEECTTSSEE
T ss_pred             cccCCCCCcCCCCCEEEcCCCC-EEeeCCCCcEECCCCCcC
Confidence            34444444454  678887776 999999999977776655

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG3509|consensus

Probab=93.05  E-value=0.1  Score=55.87  Aligned_cols=105  Identities=32%  Similarity=0.757  Sum_probs=81.2

Q ss_pred             ceeCCccccCCCCCCCCCCCCCCCccCCcccCCCCCCCCcccCCCccccCCCCCCCCccceeeecCCCCCCCCCCCCCCC
Q psy954          132 KCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEE  211 (337)
Q Consensus       132 ~CI~~~~~CDG~~DC~DgsDE~~~~C~~~~c~c~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~C~~~~d~~c~~~~C~~~  211 (337)
                      +|....+.|++..|+.+.||+.+..+..                                              +.+++.
T Consensus         2 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~~~~p~   35 (964)
T KOG3509|consen    2 ECVKNRYACDRQPDCRDRSDVANDPAIG----------------------------------------------SACSPN   35 (964)
T ss_pred             chhhhhhhhccchhhHhhcccCCCcccc----------------------------------------------ccCCcc
Confidence            5778889999999999999997522211                                              123333


Q ss_pred             CceeeCCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCC---CCCCCCCcEEeeCC-ceecCCCcCCCCCCCCCC
Q psy954          212 TEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPK---QSSCSPDQFSCGNG-RCINTGWLCDHDNDCGDG  287 (337)
Q Consensus       212 ~~f~C~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~---~~~C~~~~f~C~~g-~Ci~~~~~CDg~~dC~d~  287 (337)
                      . |.|.++      ++....|.||...++..++++    .+|..   ...|....+.|.+- ++.+.+..|+|.++|.++
T Consensus        36 ~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~  104 (964)
T KOG3509|consen   36 E-FKCNNP------RCVQPEALLDADSTCGPNSTP----SGCNAKPSASDCKPTETQCRDRLRCNPQSFQCDGTNDCKDG  104 (964)
T ss_pred             h-hccCCc------cccCchhhhccccccCCCCCc----CCccccccccccCCcccccccchhcCCccccccCCCCCCcc
Confidence            3 778777      889999999999999999977    45532   35667788888765 788888999999999999


Q ss_pred             CCCCCCC
Q psy954          288 SDEGKEC  294 (337)
Q Consensus       288 sDE~~~C  294 (337)
                      ++| ..+
T Consensus       105 ~~~-~~~  110 (964)
T KOG3509|consen  105 SDE-VGC  110 (964)
T ss_pred             chh-ccc
Confidence            999 443

>smart00181 EGF Epidermal growth factor-like domain

Probab=93.03  E-value=0.096  Score=32.12  Aligned_cols=25  Identities=24%  Similarity=0.619  Sum_probs=19.6

Q ss_pred             CCccc-cccCCCCCcCeecCCCCcccc
Q psy954           83 GGCAQ-SCHPGPNGTAECKCDESTKLV  108 (337)
Q Consensus        83 ggCs~-lCl~~~~~~~~C~Cp~g~~L~  108 (337)
                      +.|.+ .|+...++ ++|.|+.||.+.
T Consensus         6 ~~C~~~~C~~~~~~-~~C~C~~g~~g~   31 (35)
T smart00181        6 GPCSNGTCINTPGS-YTCSCPPGYTGD   31 (35)
T ss_pred             CCCCCCEEECCCCC-eEeECCCCCccC
Confidence            45666 89988555 999999999864

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=92.68  E-value=0.099  Score=32.17  Aligned_cols=26  Identities=27%  Similarity=0.686  Sum_probs=19.6

Q ss_pred             CccccccCCCCCcCeecCCCCcccccCC
Q psy954           84 GCAQSCHPGPNGTAECKCDESTKLVNEG  111 (337)
Q Consensus        84 gCs~lCl~~~~~~~~C~Cp~g~~L~~~~  111 (337)
                      .|...|-+...  .+|.||+||+|.++.
T Consensus         7 ~CpA~CDpn~~--~~C~CPeGyIlde~~   32 (34)
T PF09064_consen    7 ECPADCDPNSP--GQCFCPEGYILDEGS   32 (34)
T ss_pred             cCCCccCCCCC--CceeCCCceEecCCc
Confidence            47777776433  489999999998754

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=92.53  E-value=0.082  Score=47.42  Aligned_cols=38  Identities=24%  Similarity=0.564  Sum_probs=32.6

Q ss_pred             CCCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcc
Q psy954           75 VNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRM  113 (337)
Q Consensus        75 ~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~  113 (337)
                      .++|...++.|.|.|+..+++ |.|.|+.||.|..++++
T Consensus       187 ~~~C~~~~~~c~~~C~~~~g~-~~c~c~~g~~~~~~~~~  224 (224)
T cd01475         187 PDLCATLSHVCQQVCISTPGS-YLCACTEGYALLEDNKT  224 (224)
T ss_pred             chhhcCCCCCccceEEcCCCC-EEeECCCCccCCCCCCC
Confidence            367887788899999988777 99999999999888764

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=90.40  E-value=0.31  Score=30.29  Aligned_cols=23  Identities=26%  Similarity=0.741  Sum_probs=17.8

Q ss_pred             cccCCCCCcCeecCCCCcccccCCccc
Q psy954           88 SCHPGPNGTAECKCDESTKLVNEGRMC  114 (337)
Q Consensus        88 lCl~~~~~~~~C~Cp~g~~L~~~~~~C  114 (337)
                      +|+..+.+ ++|.|+.||.   +++.|
T Consensus        16 ~C~~~~g~-~~C~C~~g~~---~g~~C   38 (39)
T smart00179       16 TCVNTVGS-YRCECPPGYT---DGRNC   38 (39)
T ss_pred             EeECCCCC-eEeECCCCCc---cCCcC
Confidence            78877666 9999999987   55555

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=90.12  E-value=0.88  Score=26.67  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=22.2

Q ss_pred             CCCceEEEEE-CCEEEEEeCCCCceEE
Q psy954           15 TIYPFAITVH-RNYIYWTDLQLRGVYR   40 (337)
Q Consensus        15 ~~~Pf~Lav~-~d~IYWtDw~~~~I~r   40 (337)
                      +.+|.||++. ++.||-+|+....|+.
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEE
Confidence            3589999995 9999999999888764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=88.24  E-value=0.17  Score=30.85  Aligned_cols=27  Identities=41%  Similarity=0.964  Sum_probs=19.5

Q ss_pred             CCCCcCCCCCccccccCCCCCcCeecCCCCcc
Q psy954           75 VNPCNIHNGGCAQSCHPGPNGTAECKCDESTK  106 (337)
Q Consensus        75 ~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~  106 (337)
                      .+||+  |+|   .|+....+.++|.|+.||.
T Consensus         3 ~~~C~--n~g---~C~~~~~~~y~C~C~~G~~   29 (32)
T PF00008_consen    3 SNPCQ--NGG---TCIDLPGGGYTCECPPGYT   29 (32)
T ss_dssp             TTSST--TTE---EEEEESTSEEEEEEBTTEE
T ss_pred             CCcCC--CCe---EEEeCCCCCEEeECCCCCc
Confidence            46777  333   5777775569999999985

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=85.35  E-value=0.9  Score=27.16  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=16.6

Q ss_pred             ccccCCCCCcCeecCCCCcccc
Q psy954           87 QSCHPGPNGTAECKCDESTKLV  108 (337)
Q Consensus        87 ~lCl~~~~~~~~C~Cp~g~~L~  108 (337)
                      .+|+..+.+ ++|.||.||...
T Consensus        12 ~~C~~~~~~-~~C~C~~g~~g~   32 (36)
T cd00053          12 GTCVNTPGS-YRCVCPPGYTGD   32 (36)
T ss_pred             CEEecCCCC-eEeECCCCCccc
Confidence            577877755 999999998754

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=81.62  E-value=5.5  Score=35.77  Aligned_cols=38  Identities=16%  Similarity=0.224  Sum_probs=31.9

Q ss_pred             eEEEEcCCCCceEEEEE--CCEEEEEeCCCCceEEEeccc
Q psy954            8 SMVLISATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHT   45 (337)
Q Consensus         8 R~vl~~~~~~Pf~Lav~--~d~IYWtDw~~~~I~r~~k~~   45 (337)
                      .+++...+..|.||++.  ++.||++|...+.|++.+...
T Consensus       126 ~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~  165 (246)
T PF08450_consen  126 VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA  165 (246)
T ss_dssp             EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred             EEEEecCcccccceEECCcchheeecccccceeEEEeccc
Confidence            34445778999999999  668999999999999998863

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=80.50  E-value=0.44  Score=29.95  Aligned_cols=29  Identities=28%  Similarity=0.696  Sum_probs=19.3

Q ss_pred             CcCCCCCcc--ccccCCCCCcCeecCCCCccc
Q psy954           78 CNIHNGGCA--QSCHPGPNGTAECKCDESTKL  107 (337)
Q Consensus        78 C~~~nggCs--~lCl~~~~~~~~C~Cp~g~~L  107 (337)
                      |+.+|++|.  -.|..++.+ ++|.|+.||.-
T Consensus         1 C~~~~~~C~~nA~C~~~~~~-~~C~C~~Gy~G   31 (36)
T PF12947_consen    1 CLENNGGCHPNATCTNTGGS-YTCTCKPGYEG   31 (36)
T ss_dssp             TTTGGGGS-TTCEEEE-TTS-EEEEE-CEEEC
T ss_pred             CCCCCCCCCCCcEeecCCCC-EEeECCCCCcc
Confidence            455566775  378888775 99999999864

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	337
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		9e-18
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		3e-16
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		1e-17
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		6e-16
2fyj_A	82	Nmr Solution Structure Of Calcium-Loaded Lrp Double		3e-14
3soq_A	318	The Structure Of The First Ywtd Beta Propeller Doma		2e-12
3sob_B	316	The Structure Of The First Ywtd Beta Propeller Doma		3e-12
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		4e-12
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		4e-12
2lgp_A	94	Solution Structure Of La45 From Ldlr Length = 94		2e-10
3v65_B	386	Crystal Structure Of Agrin And Lrp4 Complex Length		3e-09
3v64_C	349	Crystal Structure Of Agrin And Lrp4 Length = 349		4e-09
2fcw_B	80	Structure Of A Complex Between The Pair Of The Ldl		2e-08
2fcw_B	80	Structure Of A Complex Between The Pair Of The Ldl		5e-08
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		5e-08
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		5e-08
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		5e-08
1f5y_A	85	Nmr Structure Of A Concatemer Of The First And Seco		3e-07
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		4e-07
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		4e-07
1ijq_A	316	Crystal Structure Of The Ldl Receptor Ywtd-Egf Doma		1e-06
2xrc_A	565	Human Complement Factor I Length = 565		3e-06
2m0p_A	52	Solution Structure Of The Tenth Complement Type Rep		3e-05
1j8e_A	44	Crystal Structure Of Ligand-Binding Repeat Cr7 From		6e-05
1d2l_A	45	Nmr Solution Structure Of Complement-Like Repeat Cr		1e-04
2kny_A	80	Fusion Construct Of Cr17 From Lrp-1 And Apoe Residu		3e-04
2knx_A	50	Solution Structure Of Complement Repeat Cr17 From L		5e-04

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 87.4 bits (215), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 103/228 (45%), Gaps = 36/228 (15%)
Query: 121 CDGSKFFCRNGKCISRMWXXXXXXXXXXXXXXXPNYCNVQITGVSQPPGELGVPGHVQ-- 178
           C+ ++F C++GKCIS  W                  C      V+   G+    G V   
Sbjct: 24  CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----LSVTCKSGDFSCGGRVNRC 79
Query: 179 ITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEET----EFTCTENKAWNRAQCIPKKWLC 234
           I    +  G        Q    N  + + C  +T    EF C + K      CI ++++C
Sbjct: 80  IPQFWRCDG--------QVDCDNGSDEQGCPPKTCSQDEFRCHDGK------CISRQFVC 125
Query: 235 DGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG-KE 293
           D D DC+DG+DE +    CP  + C P  F C +  CI   W CD+D DC DGSDE  + 
Sbjct: 126 DSDRDCLDGSDEAS----CPVLT-CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 180
Query: 294 CHDKY------RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           C   Y        CS+ EF C + +CI  ++ CDG  DC D+SDE NC
Sbjct: 181 CRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 228

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 223 NRAQCIPKKWLCDGDPDCVDGADE-----NTTALNCPKQSSCSPDQFSCGNGRCINTGWL 277
           N + CIP+ W CD DPDC DG+DE         +     S CS  +F C +G CI++ W 
Sbjct: 153 NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWR 212
Query: 278 CDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           CD   DC D SDE + C     TC  +EF C +  CI  +  CD E DC D SDE  C
Sbjct: 213 CDGGPDCKDKSDE-ENC--AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 267

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 103/228 (45%), Gaps = 36/228 (15%)
Query: 121 CDGSKFFCRNGKCISRMWXXXXXXXXXXXXXXXPNYCNVQITGVSQPPGELGVPGHVQ-- 178
           C+ ++F C++GKCIS  W                  C      V+   G+    G V   
Sbjct: 6   CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----LSVTCKSGDFSCGGRVNRC 61
Query: 179 ITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEET----EFTCTENKAWNRAQCIPKKWLC 234
           I    +  G        Q    N  + + C  +T    EF C + K      CI ++++C
Sbjct: 62  IPQFWRCDG--------QVDCDNGSDEQGCPPKTCSQDEFRCHDGK------CISRQFVC 107
Query: 235 DGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG-KE 293
           D D DC+DG+DE +    CP  + C P  F C +  CI   W CD+D DC DGSDE  + 
Sbjct: 108 DSDRDCLDGSDEAS----CPVLT-CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 162
Query: 294 CHDKY------RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           C   Y        CS+ EF C + +CI  ++ CDG  DC D+SDE NC
Sbjct: 163 CRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 210

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/118 (42%), Positives = 62/118 (52%), Gaps = 8/118 (6%)
Query: 223 NRAQCIPKKWLCDGDPDCVDGADE-----NTTALNCPKQSSCSPDQFSCGNGRCINTGWL 277
           N + CIP+ W CD DPDC DG+DE         +     S CS  +F C +G CI++ W 
Sbjct: 135 NSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWR 194
Query: 278 CDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           CD   DC D SDE + C     TC  +EF C +  CI  +  CD E DC D SDE  C
Sbjct: 195 CDGGPDCKDKSDE-ENC--AVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 249

>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module Length = 82

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSS-EEFACQNFKCIRK 316
           +C P+QFSC +GRCI   W CD D+DCGD SDE   C   Y TC    +F C N +CI  
Sbjct: 4   TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASC--AYPTCFPLTQFTCNNGRCINI 61
Query: 317 TYHCDGEDDCGDRSDEFNCNY 337
            + CD ++DCGD SDE  C++
Sbjct: 62  NWRCDNDNDCGDNSDEAGCSH 82

>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Dkk1 Peptide Length = 318

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 2/111 (1%)
Query: 5   TGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIH 64
           T    V+  +  +PFA+T+  + +YWTD     +    K+TG  + E+   +  SP DIH
Sbjct: 198 TNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF-SPMDIH 256
Query: 65  VYSADSQKCSVNPCNIHNGGCAQSCHPGP-NGTAECKCDESTKLVNEGRMC 114
            +S   Q  + NPC I NGGC+  C   P     +C C    KL+  G+ C
Sbjct: 257 AFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 307

>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of Lrp6 In Complex With A Fab Length = 316

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PFA+T+  + +YWTD     +    K+TG  + E+   +  SP DIH +S   Q  + N
Sbjct: 207 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDIF-SPMDIHAFSQQRQPNATN 265
Query: 77  PCNIHNGGCAQSCHPGP-NGTAECKCDESTKLVNEGRMC 114
           PC I NGGC+  C   P     +C C    KL+  G+ C
Sbjct: 266 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTC 304

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 5   TGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLED----SP 60
           TG  +++     + F  T+  +Y+YWTD Q R + R  K +    + ++ +L D      
Sbjct: 511 TGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREV-IIDQLPDLMGLKA 569
Query: 61  RDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
            ++H      +    NPC   NGGC+  C   P G   C C    +L+++ + C+ 
Sbjct: 570 TNVH------RVIGSNPCAEENGGCSHLCLYRPQGL-RCACPIGFELISDMKTCIV 618

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 5   TGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLED----SP 60
           TG  +++     + F  T+  +Y+YWTD Q R + R  K +    + ++ +L D      
Sbjct: 503 TGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREV-IIDQLPDLMGLKA 561
Query: 61  RDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
            ++H      +    NPC   NGGC+  C   P G   C C    +L+++ + C+ 
Sbjct: 562 TNVH------RVIGSNPCAEENGGCSHLCLYRPQGL-RCACPIGFELISDMKTCIV 610

>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr Length = 94

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG-KECHDKY------RTCSSEEFACQN 310
           +C P  F C +  CI   W CD+D DC DGSDE  + C   Y        CS+ EF C +
Sbjct: 6   TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLS 65
Query: 311 FKCIRKTYHCDGEDDCGDRSDEFNC 335
            +CI  ++ CDG  DC D+SDE NC
Sbjct: 66  GECIHSSWRCDGGPDCKDKSDEENC 90

>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex Length = 386

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 10  VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
           V+     +PFAITV  + +YWTD   + +  A K TG N  E+++     P DIH     
Sbjct: 283 VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHTLHPQ 341
Query: 70  SQKCSVNPCNIHNGGCAQSCHP-GPNGTAECKCDESTKLVN 109
            Q    N C  +NGGC   C P G N T  C C    + +N
Sbjct: 342 RQPAGKNRCGDNNGGCTHLCLPSGQNYT--CACPTGFRKIN 380

>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4 Length = 349

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 10  VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
           V+     +PFAITV  + +YWTD   + +  A K TG N  E+++     P DIH     
Sbjct: 240 VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ-EIIRNKLHFPMDIHTLHPQ 298
Query: 70  SQKCSVNPCNIHNGGCAQSCHP-GPNGTAECKCDESTKLVN 109
            Q    N C  +NGGC   C P G N T  C C    + +N
Sbjct: 299 RQPAGKNRCGDNNGGCTHLCLPSGQNYT--CACPTGFRKIN 337

>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap) Length = 80

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGR 270
           + EF C + K      CI ++++CD D DC+DG+DE +    CP  + C P  F C +  
Sbjct: 5   QAEFRCHDGK------CISRQFVCDSDRDCLDGSDEAS----CPVLT-CGPASFQCNSST 53
Query: 271 CINTGWLCDHDNDCGDGSDE 290
           CI   W CD+D DC DGSDE
Sbjct: 54  CIPQLWACDNDPDCEDGSDE 73

>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl Receptor Ligand-Binding Modules 3-4 And The Receptor Associated Protein (Rap) Length = 80

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKT 317
           +CS  +F C +G+CI+  ++CD D DC DGSDE         TC    F C +  CI + 
Sbjct: 2   TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC---PVLTCGPASFQCNSSTCIPQL 58
Query: 318 YHCDGEDDCGDRSDEF 333
           + CD + DC D SDE+
Sbjct: 59  WACDNDPDCEDGSDEW 74

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 11/124 (8%)
Query: 5   TGASMVLI--SATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRD 62
           +GA+ +++  S  + P  +TV  N++YW D Q + + + +  TG      V+       D
Sbjct: 507 SGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDM-TGREGRTKVQARIAQLSD 565
Query: 63  IH-VYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITC 121
           IH V   + Q+   +PC   NGGC+  C    +GT  C C     L+ +        ++C
Sbjct: 566 IHAVKELNLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQD-------ELSC 618
Query: 122 DGSK 125
            G+K
Sbjct: 619 GGTK 622

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PF +T +++YIYWTD   R + RA K +G N   +   L D   DI V+ + S++   N
Sbjct: 207 HPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHL-DYVMDILVFHS-SRQSGWN 264
Query: 77  PCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
            C   NG C+  C   P G   C C     L  + R C A
Sbjct: 265 ECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 304

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PF +T +++YIYWTD   R + RA K +G N   +   L D   DI V+ + S++   N
Sbjct: 214 HPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHL-DYVMDILVFHS-SRQSGWN 271
Query: 77  PCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
            C   NG C+  C   P G   C C     L  + R C A
Sbjct: 272 ECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA 311

>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second Ligand-Binding Modules Of The Human Ldl Receptor Length = 85

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF--KCIRK 316
           C  ++F C +G+CI+  W+CD   +C DGSDE +E      TC S +F+C     +CI +
Sbjct: 8   CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSV-TCKSGDFSCGGRVNRCIPQ 66
Query: 317 TYHCDGEDDCGDRSDEFNC 335
            + CDG+ DC + SDE  C
Sbjct: 67  FWRCDGQVDCDNGSDEQGC 85

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PF++ V  + ++WTD+    ++ A + TG+++  + + L  SP D+ ++   +Q   VN
Sbjct: 332 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 390
Query: 77  PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVAK 117
            C    + NGGC   C P P     +    C C +   L  + R C+ +
Sbjct: 391 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 439

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PF++ V  + ++WTD+    ++ A + TG+++  + + L  SP D+ ++   +Q   VN
Sbjct: 292 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 350
Query: 77  PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVAK 117
            C    + NGGC   C P P     +    C C +   L  + R C+ +
Sbjct: 351 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 399

>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair Length = 316

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PF++ V  + ++WTD+    ++ A + TG+++  + + L  SP D+ ++   +Q   VN
Sbjct: 210 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 268
Query: 77  PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCV 115
            C    + NGGC   C P P     +    C C +   L  + R C+
Sbjct: 269 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 253 CPKQSSCSP--DQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQN 310
           C  Q + SP  D F C NG+ I+    CD  NDCGD SDE   C    + C  + F C++
Sbjct: 196 CYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDE--LC---CKACQGKGFHCKS 250
Query: 311 FKCIRKTYHCDGEDDCGDRSDEFNC 335
             CI   Y C+GE DC    DE  C
Sbjct: 251 GVCIPSQYQCNGEVDCITGEDEVGC 275

>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of Human Megalin Length = 52

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 257 SSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
           +SC   Q++C N +CI+  W+CD DNDCGDGSDE
Sbjct: 5   ASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDE 38

>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp Length = 44

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
           SCS  QF C +GRCI   W CD DNDCGD SDE
Sbjct: 4   SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36

>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From The Low Density Lipoprotein Receptor-Related Protein (Lrp) . Evidence For Specific Binding To The Receptor Binding Domain Of Human Alpha-2 Macroglobulin Length = 45

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG 291
           C P +F+C N RCI   W CD DNDC D SDE 
Sbjct: 6   CQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38

>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues 130-14 Length = 80

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 227 CIPKKWLCDGDPDCVDGADENTTA 250
           C+P++WLCDGD DC DGADE+  A
Sbjct: 22  CVPERWLCDGDKDCADGADESIAA 45

>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1 Length = 50

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 227 CIPKKWLCDGDPDCVDGADENTTA 250
           C+P++WLCDGD DC DGADE+  A
Sbjct: 20  CVPERWLCDGDKDCADGADESIAA 43

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-33
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	2e-28
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	8e-28
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	3e-20
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-19
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	6e-11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	9e-11
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-32
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-29
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	5e-26
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	5e-23
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	9e-19
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	4e-13
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	1e-09
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	2e-28
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	2e-21
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	7e-15
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	1e-09
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	2e-08
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	3e-26
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	8e-21
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	7e-13
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	2e-10
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	1e-08
2xrc_A	565	Human complement factor I; immune system, hydrolas	4e-21
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	1e-17
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	5e-09
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	8e-16
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	1e-15
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	7e-13
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	1e-09
3v65_B	386	Low-density lipoprotein receptor-related protein;	1e-12
3a7q_B	44	Low-density lipoprotein receptor-related protein;	3e-12
3a7q_B	44	Low-density lipoprotein receptor-related protein;	4e-10
3a7q_B	44	Low-density lipoprotein receptor-related protein;	1e-09
3a7q_B	44	Low-density lipoprotein receptor-related protein;	7e-06
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	4e-12
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	1e-11
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	1e-11
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	4e-10
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	6e-10
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	8e-05
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	2e-11
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	7e-10
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	2e-08
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	2e-05
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	2e-11
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	9e-11
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	9e-10
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	3e-05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	1e-10
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	4e-10
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	3e-08
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	6e-07
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	7e-06
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	1e-09
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	4e-07
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	3e-04
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	1e-09
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	2e-09
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	1e-07
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	5e-04
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	2e-09
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	5e-09
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	4e-08
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	1e-05
1cr8_A	42	Protein (LOW density lipoprotein receptor related	2e-09
1cr8_A	42	Protein (LOW density lipoprotein receptor related	3e-08
1cr8_A	42	Protein (LOW density lipoprotein receptor related	5e-07
1cr8_A	42	Protein (LOW density lipoprotein receptor related	7e-07
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	1e-08
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	3e-08
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	8e-07
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	5e-06
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	2e-08
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	1e-07
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	2e-06
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	2e-05
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	6e-08
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	5e-07
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	6e-07
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	1e-05
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	1e-07
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	8e-07
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	2e-06
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	2e-05
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	2e-07
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	2e-07
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	4e-05
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	8e-05
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	3e-07
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	9e-07
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	4e-06
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	7e-04
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	6e-05
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	1e-04
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	1e-04
2wph_E	59	Coagulation factor IXA light chain; serine proteas	4e-04
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	5e-04

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  130 bits (327), Expect = 1e-33
 Identities = 69/240 (28%), Positives = 97/240 (40%), Gaps = 62/240 (25%)

Query: 98  ECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
           + +   +  L   G         C+ ++F C++GKCIS  W CDG  +C D SDE    C
Sbjct: 4   KLRWTVALLLAAAGTAV---GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 60

Query: 158 NVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCT 217
                                                          +  C    +F+C 
Sbjct: 61  L----------------------------------------------SVTCKSG-DFSCG 73

Query: 218 ENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWL 277
                   +CIP+ W CDG  DC +G+DE      CP   +CS D+F C +G+CI+  ++
Sbjct: 74  GRVN----RCIPQFWRCDGQVDCDNGSDE----QGCP-PKTCSQDEFRCHDGKCISRQFV 124

Query: 278 CDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
           CD D DC DGSD   E      TC    F C +  CI + + CD + DC D SDE+    
Sbjct: 125 CDSDRDCLDGSD---EASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 181

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  114 bits (287), Expect = 2e-28
 Identities = 72/223 (32%), Positives = 87/223 (39%), Gaps = 63/223 (28%)

Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHV 177
             TC   +F C +GKCISR + CD D DC D SDE    C V   G              
Sbjct: 103 PKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCG-------------- 146

Query: 178 QITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGD 237
                                               F C  +       CIP+ W CD D
Sbjct: 147 ---------------------------------PASFQCNSS------TCIPQLWACDND 167

Query: 238 PDCVDGADE-----NTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGK 292
           PDC DG+DE         +     S CS  +F C +G CI++ W CD   DC D SDE  
Sbjct: 168 PDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEE- 226

Query: 293 ECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
             +    TC  +EF C +  CI  +  CD E DC D SDE  C
Sbjct: 227 --NCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 267

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score =  113 bits (283), Expect = 8e-28
 Identities = 76/280 (27%), Positives = 109/280 (38%), Gaps = 76/280 (27%)

Query: 67  SADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKF 126
           +A   +C  N     +G C        +G+AEC+         +       ++TC    F
Sbjct: 18  TAVGDRCERNEFQCQDGKCISYKWVC-DGSAECQDGS------DESQETCLSVTCKSGDF 70

Query: 127 FCRN--GKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQ 184
            C     +CI + W CDG  DC + SDE                                
Sbjct: 71  SCGGRVNRCIPQFWRCDGQVDCDNGSDEQ------------------------------- 99

Query: 185 PPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGA 244
                                + C ++ EF C +       +CI ++++CD D DC+DG+
Sbjct: 100 -----------------GCPPKTCSQD-EFRCHDG------KCISRQFVCDSDRDCLDGS 135

Query: 245 DENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE-------GKECHDK 297
           DE     +CP   +C P  F C +  CI   W CD+D DC DGSDE              
Sbjct: 136 DEA----SCP-VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGD 190

Query: 298 YRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
              CS+ EF C + +CI  ++ CDG  DC D+SDE NC  
Sbjct: 191 SSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAV 230

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 91.1 bits (225), Expect = 3e-20
 Identities = 52/233 (22%), Positives = 78/233 (33%), Gaps = 25/233 (10%)

Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHV 177
            +TC  + F C +  CI ++W+CD D DC D SDE P  C              G     
Sbjct: 142 VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR-------GLYVFQGDSSPC 194

Query: 178 QITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAW-NRAQCIPKKWLCDG 236
                    G  +  +    G  +  +    +     TC  ++   +   CI     CD 
Sbjct: 195 SAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDR 254

Query: 237 DPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKEC-- 294
           + DC D +DE              P++F C +G CI    +C+   DC D SDE  +   
Sbjct: 255 EYDCKDMSDEVG---CVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECG 311

Query: 295 ------------HDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
                       H         E  C +   +     C+  D+C D       
Sbjct: 312 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL 364

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 89.1 bits (220), Expect = 1e-19
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 232 WLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG 291
           W        +  A              C  ++F C +G+CI+  W+CD   +C DGSDE 
Sbjct: 3   WKLRWTVALLLAAAGTAVG------DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDE- 55

Query: 292 KECHDKYRTCSSEEFACQNF--KCIRKTYHCDGEDDCGDRSDEFNCNY 337
            +      TC S +F+C     +CI + + CDG+ DC + SDE  C  
Sbjct: 56  SQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPP 103

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 62.5 bits (151), Expect = 6e-11
 Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 9/148 (6%)

Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PF++ V  + ++WTD+    ++ A + TG+++  + + L  SP D+ ++   +Q   VN
Sbjct: 604 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 662

Query: 77  PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFC 128
            C    + NGGC   C P P     +    C C +   L  + R C+ +      ++   
Sbjct: 663 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTEAEAAVATQETS 722

Query: 129 RNGKCISRMWSCDGDDDCGDNSDEDPNY 156
                +S               D     
Sbjct: 723 TVRLKVSSTAVRTQHTTTRPVPDTSRLP 750

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 62.2 bits (150), Expect = 9e-11
 Identities = 35/226 (15%), Positives = 53/226 (23%), Gaps = 63/226 (27%)

Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHV 177
             TC   +F C +G CI     CD + DC D SDE                         
Sbjct: 230 VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNVTL----------------- 272

Query: 178 QITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGD 237
                                         C+   +F C      +  +CI    +C+  
Sbjct: 273 ------------------------------CEGPNKFKC------HSGECITLDKVCNMA 296

Query: 238 PDCVDGADENTTALNCPK------QSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEG 291
            DC D +DE        +        S   +    G       G+       C D  +  
Sbjct: 297 RDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDE-- 354

Query: 292 KECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
             C D              +KC  +            ++       
Sbjct: 355 --CQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYL 398

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  126 bits (318), Expect = 2e-32
 Identities = 67/218 (30%), Positives = 93/218 (42%), Gaps = 59/218 (27%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI 179
            C+ ++F C++GKCIS  W CDG  +C D SDE    C                      
Sbjct: 5   RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCL--------------------- 43

Query: 180 TGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPD 239
                                    +  C    +F+C         +CIP+ W CDG  D
Sbjct: 44  -------------------------SVTCKSG-DFSC----GGRVNRCIPQFWRCDGQVD 73

Query: 240 CVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYR 299
           C +G+DE      CP ++ CS D+F C +G+CI+  ++CD D DC DGSDE         
Sbjct: 74  CDNGSDE----QGCPPKT-CSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE---ASCPVL 125

Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
           TC    F C +  CI + + CD + DC D SDE+    
Sbjct: 126 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 163

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  118 bits (296), Expect = 1e-29
 Identities = 69/223 (30%), Positives = 84/223 (37%), Gaps = 63/223 (28%)

Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHV 177
             TC   +F C +GKCISR + CD D DC D SDE                         
Sbjct: 85  PKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE------------------------- 119

Query: 178 QITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGD 237
                                               F C  +       CIP+ W CD D
Sbjct: 120 ------------------------ASCPVLTCGPASFQCNSS------TCIPQLWACDND 149

Query: 238 PDCVDGADE-----NTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGK 292
           PDC DG+DE         +     S CS  +F C +G CI++ W CD   DC D SD   
Sbjct: 150 PDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSD--- 206

Query: 293 ECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           E +    TC  +EF C +  CI  +  CD E DC D SDE  C
Sbjct: 207 EENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 249

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score =  107 bits (269), Expect = 5e-26
 Identities = 69/253 (27%), Positives = 98/253 (38%), Gaps = 75/253 (29%)

Query: 94  NGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRN--GKCISRMWSCDGDDDCGDNSD 151
           +G+AEC+         +       ++TC    F C     +CI + W CDG  DC + SD
Sbjct: 26  DGSAECQDGS------DESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSD 79

Query: 152 EDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEE 211
           E                                                     + C ++
Sbjct: 80  EQ------------------------------------------------GCPPKTCSQD 91

Query: 212 TEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRC 271
            EF C +       +CI ++++CD D DC+DG+DE           +C P  F C +  C
Sbjct: 92  -EFRCHD------GKCISRQFVCDSDRDCLDGSDEA-----SCPVLTCGPASFQCNSSTC 139

Query: 272 INTGWLCDHDNDCGDGSDE-------GKECHDKYRTCSSEEFACQNFKCIRKTYHCDGED 324
           I   W CD+D DC DGSDE                 CS+ EF C + +CI  ++ CDG  
Sbjct: 140 IPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGP 199

Query: 325 DCGDRSDEFNCNY 337
           DC D+SDE NC  
Sbjct: 200 DCKDKSDEENCAV 212

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 99.1 bits (246), Expect = 5e-23
 Identities = 54/135 (40%), Positives = 69/135 (51%), Gaps = 15/135 (11%)

Query: 205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQF 264
             +C E  EF C + K      CI  KW+CDG  +C DG+DE+           C    F
Sbjct: 3   GDRC-ERNEFQCQDGK------CISYKWVCDGSAECQDGSDESQETCLSVT---CKSGDF 52

Query: 265 SCGN--GRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDG 322
           SCG    RCI   W CD   DC +GSDE + C    +TCS +EF C + KCI + + CD 
Sbjct: 53  SCGGRVNRCIPQFWRCDGQVDCDNGSDE-QGC--PPKTCSQDEFRCHDGKCISRQFVCDS 109

Query: 323 EDDCGDRSDEFNCNY 337
           + DC D SDE +C  
Sbjct: 110 DRDCLDGSDEASCPV 124

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 86.4 bits (213), Expect = 9e-19
 Identities = 59/288 (20%), Positives = 84/288 (29%), Gaps = 80/288 (27%)

Query: 69  DSQKCSVNPCNIHNGGCA-QSCHPGP---NGTAECK--CDESTKLVNEGRMCVAKNITCD 122
           D   C V  C   +  C   +C P     +   +C+   DE  +      +    +  C 
Sbjct: 118 DEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCS 177

Query: 123 GSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGV 182
             +F C +G+CI   W CDG  DC D SDE                              
Sbjct: 178 AFEFHCLSGECIHSSWRCDGGPDCKDKSDE------------------------------ 207

Query: 183 SQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVD 242
                                         EF C      +   CI     CD + DC D
Sbjct: 208 -------------------ENCAVATCRPDEFQC------SDGNCIHGSRQCDREYDCKD 242

Query: 243 GADENTTALNC-PKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKEC------- 294
            +DE    + C        P++F C +G CI    +C+   DC D SDE  +        
Sbjct: 243 MSDE----VGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECL 298

Query: 295 -------HDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
                  H         E  C +   +     C+  D+C D       
Sbjct: 299 DNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQL 346

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 69.1 bits (168), Expect = 4e-13
 Identities = 46/289 (15%), Positives = 77/289 (26%), Gaps = 77/289 (26%)

Query: 61  RDIHVYSADSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNIT 120
           R ++V+  DS  CS    +  +G C  S           +CD      ++         T
Sbjct: 164 RGLYVFQGDSSPCSAFEFHCLSGECIHSSW---------RCDGGPDCKDKSDEENCAVAT 214

Query: 121 CDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQIT 180
           C   +F C +G CI     CD + DC D SDE                            
Sbjct: 215 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEV--------------------------- 247

Query: 181 GVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDC 240
                                  N   C+   +F C      +  +CI    +C+   DC
Sbjct: 248 --------------------GCVNVTLCEGPNKFKC------HSGECITLDKVCNMARDC 281

Query: 241 VDGADENTTALNCPKQSSCSP------------DQFSCGNGRCINTGWLCDHDNDCGDGS 288
            D +DE        +    +              +  C +G  +     C+  ++C D  
Sbjct: 282 RDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPD 341

Query: 289 DEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
              + C          +  C+    +                   N + 
Sbjct: 342 TCSQLCV---NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 387

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 58.7 bits (141), Expect = 1e-09
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 9/108 (8%)

Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PF++ V  + ++WTD+    ++ A + TG+++  + + L  SP D+ ++   +Q   VN
Sbjct: 586 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHQLTQPRGVN 644

Query: 77  PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVA 116
            C    + NGGC   C P P     +    C C +   L  + R C+ 
Sbjct: 645 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT 692

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score =  104 bits (262), Expect = 2e-28
 Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 1/80 (1%)

Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKT 317
           +C P+QFSC +GRCI   W CD D+DCGD SDE              +F C N +CI   
Sbjct: 4   TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDE-SASCAYPTCFPLTQFTCNNGRCININ 62

Query: 318 YHCDGEDDCGDRSDEFNCNY 337
           + CD ++DCGD SDE  C++
Sbjct: 63  WRCDNDNDCGDNSDEAGCSH 82

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 86.2 bits (214), Expect = 2e-21
 Identities = 36/81 (44%), Positives = 45/81 (55%), Gaps = 9/81 (11%)

Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNG 269
              +F+C   +      CIP  W CD D DC D +DE+    +C   +     QF+C NG
Sbjct: 6   PPNQFSCASGR------CIPISWTCDLDDDCGDRSDESA---SCAYPTCFPLTQFTCNNG 56

Query: 270 RCINTGWLCDHDNDCGDGSDE 290
           RCIN  W CD+DNDCGD SDE
Sbjct: 57  RCININWRCDNDNDCGDNSDE 77

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 68.1 bits (167), Expect = 7e-15
 Identities = 35/127 (27%), Positives = 44/127 (34%), Gaps = 53/127 (41%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI 179
           TC  ++F C +G+CI   W+CD DDDCGD SDE  +                        
Sbjct: 4   TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCA---------------------- 41

Query: 180 TGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPD 239
                                       C   T+FTC         +CI   W CD D D
Sbjct: 42  -------------------------YPTCFPLTQFTCNNG------RCININWRCDNDND 70

Query: 240 CVDGADE 246
           C D +DE
Sbjct: 71  CGDNSDE 77

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           RTC   +F+C + +CI  ++ CD +DDCGDRSDE   
Sbjct: 3   RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESAS 39

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 114 CVAKNITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDE 152
             A       ++F C NG+CI+  W CD D+DCGDNSDE
Sbjct: 39  SCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE 77

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 98.5 bits (246), Expect = 3e-26
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKT 317
           +CS  +F C +G+CI+  ++CD D DC DGSDE   C     TC    F C +  CI + 
Sbjct: 2   TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCP--VLTCGPASFQCNSSTCIPQL 58

Query: 318 YHCDGEDDCGDRSDEFNCN 336
           + CD + DC D SDE+   
Sbjct: 59  WACDNDPDCEDGSDEWPQR 77

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 84.3 bits (209), Expect = 8e-21
 Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 12/85 (14%)

Query: 206 RKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFS 265
           + C  + EF C      +  +CI ++++CD D DC+DG+DE     +CP   +C P  F 
Sbjct: 1   KTC-SQAEFRC------HDGKCISRQFVCDSDRDCLDGSDE----ASCPVL-TCGPASFQ 48

Query: 266 CGNGRCINTGWLCDHDNDCGDGSDE 290
           C +  CI   W CD+D DC DGSDE
Sbjct: 49  CNSSTCIPQLWACDNDPDCEDGSDE 73

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 62.3 bits (152), Expect = 7e-13
 Identities = 37/127 (29%), Positives = 44/127 (34%), Gaps = 55/127 (43%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQI 179
           TC  ++F C +GKCISR + CD D DC D SDE    C                      
Sbjct: 2   TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEA--SC---------------------- 37

Query: 180 TGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPD 239
                                       C     F C  +       CIP+ W CD DPD
Sbjct: 38  ------------------------PVLTC-GPASFQCNSS------TCIPQLWACDNDPD 66

Query: 240 CVDGADE 246
           C DG+DE
Sbjct: 67  CEDGSDE 73

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY 337
           +TCS  EF C + KCI + + CD + DC D SDE +C  
Sbjct: 1   KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV 39

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B Length = 80

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
            +TC  + F C +  CI ++W+CD D DC D SDE P  C
Sbjct: 39  VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 78

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 93.4 bits (232), Expect = 4e-21
 Identities = 41/128 (32%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 209 DEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGN 268
            E     C      + A+C   K    G  D  D            K  S   D F C N
Sbjct: 161 TECLHVHCR-GLETSLAECTFTKRRTMGYQDFADVVCYT------QKADSPMDDFFQCVN 213

Query: 269 GRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGD 328
           G+ I+    CD  NDCGD SDE   C    + C  + F C++  CI   Y C+GE DC  
Sbjct: 214 GKYISQMKACDGINDCGDQSDE-LCC----KACQGKGFHCKSGVCIPSQYQCNGEVDCIT 268

Query: 329 RSDEFNCN 336
             DE  C 
Sbjct: 269 GEDEVGCA 276

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 82.9 bits (204), Expect = 1e-17
 Identities = 25/108 (23%), Positives = 45/108 (41%)

Query: 9   MVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSA 68
           ++  S  + P  +TV  N++YW D Q + + + +        ++  R+        V   
Sbjct: 513 VLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKEL 572

Query: 69  DSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
           + Q+   +PC   NGGC+  C    +GT  C C     L+ +   C  
Sbjct: 573 NLQEYRQHPCAQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG 620

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 56.7 bits (136), Expect = 5e-09
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 2/112 (1%)

Query: 10  VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
           V+     +PF +T +++YIYWTD   R + RA K +G N   +++   D   DI V+   
Sbjct: 202 VIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR-TIIQGHLDYVMDILVF-HS 259

Query: 70  SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITC 121
           S++   N C   NG C+  C   P G   C C     L  + R C A     
Sbjct: 260 SRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFL 311

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 76.3 bits (187), Expect = 8e-16
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 2/103 (1%)

Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PFA+T+  + +YWTD     +    K+TG  + E+   +  SP DIH +S   Q  + N
Sbjct: 210 HPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDI-FSPMDIHAFSQQRQPNATN 268

Query: 77  PCNIHNGGCAQSCHPGPN-GTAECKCDESTKLVNEGRMCVAKN 118
           PC I NGGC+  C   P     +C C    KL+  G+ C   N
Sbjct: 269 PCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGN 311

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 75.5 bits (185), Expect = 1e-15
 Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 9/107 (8%)

Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PF++ V  + ++WTD+    ++ A + TG+++  + + L  SP D+ ++   +Q   VN
Sbjct: 210 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQPRGVN 268

Query: 77  PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCV 115
            C    + NGGC   C P P     +    C C +   L  + R C+
Sbjct: 269 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCL 315

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 68.3 bits (166), Expect = 7e-13
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 4/106 (3%)

Query: 10  VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
           ++     + F  T+  +Y+YWTD Q R + R  K +    +  +         +   +  
Sbjct: 516 LVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSAEREV--IIDQLPDLMGLKATNVH 573

Query: 70  SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV 115
               S       NGGC+  C   P G   C C    +L+++ + C+
Sbjct: 574 RVIGSNPCA-EENGGCSHLCLYRPQG-LRCACPIGFELISDMKTCI 617

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 14/159 (8%)

Query: 11  LISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADS 70
           +  +  +PFA+T+  + +YWTD     +    K+TG  + E+   +  SP DIH +S   
Sbjct: 209 VKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDI-FSPMDIHAFSQQR 267

Query: 71  QKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRN 130
           Q  + NPC I NGGC+  C   P                  +      +    +   C++
Sbjct: 268 QPNATNPCGIDNGGCSHLCLMSPVK-------------PFYQCACPTGVKLLENGKTCKD 314

Query: 131 GKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPG 169
           G     + +   D         D     +Q+  +     
Sbjct: 315 GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIA 353

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 67.5 bits (164), Expect = 1e-12
 Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 9   MVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSA 68
            V+     +PFAITV  + +YWTD   + +  A K TG N   +  +L   P DIH    
Sbjct: 282 AVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLH-FPMDIHTLHP 340

Query: 69  DSQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV 115
             Q    N C  +NGGC   C P       C C    + +N    C 
Sbjct: 341 QRQPAGKNRCGDNNGGCTHLCLPSGQN-YTCACPTGFRKIN-SHACA 385

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 59.6 bits (145), Expect = 3e-12
 Identities = 19/38 (50%), Positives = 21/38 (55%)

Query: 253 CPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
                 C  DQF C N RCI + W CD D+DC D SDE
Sbjct: 2   SGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE 39

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 53.4 bits (129), Expect = 4e-10
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
           + C  ++F C+N +CI   + CD +DDC D SDE +C 
Sbjct: 6   KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDED 153
            C+  +F CRN +CI  +W CD DDDC D+SDED
Sbjct: 7   ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDED 40

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens} Length = 44

 Score = 41.5 bits (98), Expect = 7e-06
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 10/46 (21%)

Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPK 255
           E+ +F C   +      CIP  W CD D DC+D +DE     +CPK
Sbjct: 9   EKDQFQCRNER------CIPSVWRCDEDDDCLDHSDE----DDCPK 44

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 65.3 bits (158), Expect = 4e-12
 Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 2/106 (1%)

Query: 10  VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
           V+     +PFAITV  + +YWTD   + +  A K TG N   +  +L   P DIH     
Sbjct: 240 VISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL-HFPMDIHTLHPQ 298

Query: 70  SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV 115
            Q    N C  +NGGC   C P       C C    + +N     +
Sbjct: 299 RQPAGKNRCGDNNGGCTHLCLPSGQN-YTCACPTGFRKINSHACAL 343

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 64.5 bits (156), Expect = 1e-11
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVN 76
           +PF++ V  + ++WTD+    ++ A + TG+++  + + L  SP D+ ++   +Q   VN
Sbjct: 292 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLL-SPEDMVLFHNLTQPRGVN 350

Query: 77  PC---NIHNGGCAQSCHPGP-----NGTAECKCDESTKLVNEGRMCVAK 117
            C    + NGGC   C P P     +    C C +   L  + R C+ +
Sbjct: 351 WCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE 399

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 256 QSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGK-ECHDK 297
             SCS  QF C +GRCI   W CD DNDCGD SDE    C ++
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 53.5 bits (129), Expect = 4e-10
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
            +CSS +F C + +CI + + CDG++DCGD SDE + N
Sbjct: 3   HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 53.1 bits (128), Expect = 6e-10
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQ 160
           + +C  ++F C +G+CI   W+CDGD+DCGD SDE    C  Q
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1 Length = 44

 Score = 38.4 bits (90), Expect = 8e-05
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 7/42 (16%)

Query: 205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
           +  C   T+F C   +      CIP+ W CDGD DC D +DE
Sbjct: 2   SHSC-SSTQFKCNSGR------CIPEHWTCDGDNDCGDYSDE 36

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 57.2 bits (139), Expect = 2e-11
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
           CS  +F C +G CI++ W CD   DC D SDE
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 52.6 bits (127), Expect = 7e-10
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           CS+ EF C + +CI  ++ CDG  DC D+SDE NC
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 48.7 bits (117), Expect = 2e-08
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 121 CDGSKFFCRNGKCISRMWSCDGDDDCGDNSDE 152
           C   +F C +G+CI   W CDG  DC D SDE
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1 Length = 37

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 6/37 (16%)

Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
              EF C         +CI   W CDG PDC D +DE
Sbjct: 3   SAFEFHCLSG------ECIHSSWRCDGGPDCKDKSDE 33

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 19/33 (57%), Positives = 21/33 (63%)

Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
            C P +F+C N RCI   W CD DNDC D SDE
Sbjct: 5   QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 55.4 bits (134), Expect = 9e-11
 Identities = 20/41 (48%), Positives = 24/41 (58%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQ 160
            C   +F C N +CI   W CDGD+DC DNSDE P  C+  
Sbjct: 5   QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCHQH 45

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 52.7 bits (127), Expect = 9e-10
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
             C   EFAC N +CI++ + CDG++DC D SDE    
Sbjct: 4   PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 45

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%)

Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
           +  EF C  ++      CI ++W CDGD DC+D +DE
Sbjct: 7   QPGEFACANSR------CIQERWKCDGDNDCLDNSDE 37

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 11/63 (17%), Positives = 23/63 (36%)

Query: 10  VLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD 69
            ++    YPFA+T +   +Y+TD +   V   +      M       +     I +  + 
Sbjct: 203 KVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ 262

Query: 70  SQK 72
             +
Sbjct: 263 CPQ 265

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 54.9 bits (132), Expect = 4e-10
 Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 8/75 (10%)

Query: 257 SSCSPDQFSCGN-GRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQN--FKC 313
            +C P  FSC     C+   WLCD D DC DG+DE          C        +     
Sbjct: 7   KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA-----GCLYNSTGSGSGSGST 61

Query: 314 IRKTYHCDGEDDCGD 328
                          
Sbjct: 62  EELRVRLASHLRKLR 76

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 14/71 (19%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNG- 269
            + F+C          C+P++WLCDGD DC DGADE            C  +    G+G 
Sbjct: 11  PSSFSCP-----GTHVCVPERWLCDGDKDCADGADE----SIAA---GCLYNSTGSGSGS 58

Query: 270 -RCINTGWLCD 279
                      
Sbjct: 59  GSTEELRVRLA 69

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 294 CHDKYRTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 335
              + +TC    F+C     C+ + + CDG+ DC D +DE   
Sbjct: 2   SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 44

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens} Length = 80

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 114 CVAKNITCDGSKFFCRN-GKCISRMWSCDGDDDCGDNSDEDPNYC 157
              +  TC  S F C     C+   W CDGD DC D +DE     
Sbjct: 2   SKLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 46

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 56.8 bits (136), Expect = 1e-09
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 7/133 (5%)

Query: 204 NNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQ 263
           ++   D+  E T     + +  + +    L                 L  P   SC   +
Sbjct: 3   HDEIIDKLIERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDP---SCDEHE 59

Query: 264 FSCG--NGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCI-RKTYHC 320
             CG  + +CI+  ++CD  NDC +G DE K+C    +             C  R+  H 
Sbjct: 60  HQCGGDDPQCISKLFVCDGHNDCRNGEDE-KDCTLPTKAGDKFIGDVCFDHCTKRRPEHM 118

Query: 321 DGEDDCGDRSDEF 333
               +    +  F
Sbjct: 119 TLAFESSSIAAFF 131

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 276 WLCDHDNDCGDGSDEGKECHDKYRTCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEF 333
              D       GS   +    +  +C   E  C   + +CI K + CDG +DC +  DE 
Sbjct: 30  DRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEK 89

Query: 334 NC 335
           +C
Sbjct: 90  DC 91

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 215

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 112 RMCVAKNITCDGSKFFC--RNGKCISRMWSCDGDDDCGDNSDE 152
           R+   ++ +CD  +  C   + +CIS+++ CDG +DC +  DE
Sbjct: 46  RVEELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 88

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 13/99 (13%)

Query: 239 DCVDGADENTTALNCPKQSSCSPDQFSCG--NGRCINTGWLCDHDNDCGDGSDEGKECHD 296
           D      E    +   + + C    F CG     CI+   +CD   DC +  DE  +   
Sbjct: 33  DPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD--- 89

Query: 297 KYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
               C +      N      T+H      C  R D    
Sbjct: 90  ---VCDTSVVKAGNVFSGTSTWH-----GCLAREDHVTR 120

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 56.1 bits (134), Expect = 2e-09
 Identities = 22/140 (15%), Positives = 38/140 (27%), Gaps = 29/140 (20%)

Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNG 269
           E+  F C  N      +CI    +CDG  DC +  DE+           C       GN 
Sbjct: 54  EKRTFQCGGN----EQECISDLLVCDGHKDCHNAHDED--------PDVCDTSVVKAGNV 101

Query: 270 RCINTGWLCDHDNDCGDGSDEGKECHDK------------YRTCSSEEFACQNFKCIRKT 317
               + W     + C    D                    +     E    ++ + +  +
Sbjct: 102 FSGTSTW-----HGCLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSS 156

Query: 318 YHCDGEDDCGDRSDEFNCNY 337
           ++  G  +   R        
Sbjct: 157 FNAKGYYNFASRRLILLPTD 176

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 50.7 bits (120), Expect = 1e-07
 Identities = 34/217 (15%), Positives = 56/217 (25%), Gaps = 35/217 (16%)

Query: 97  AECKCDESTKLVNEGRMCVAKNITCDGSKFFCR--NGKCISRMWSCDGDDDCGDNSDEDP 154
           AE    E      + R+   +   C+   F C     +CIS +  CDG  DC +  DEDP
Sbjct: 29  AEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP 88

Query: 155 NYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEETEF 214
           + C                              +V            H    + D  T  
Sbjct: 89  DVC---------------------------DTSVVKAGNVFSGTSTWHGCLAREDHVTRI 121

Query: 215 TCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINT 274
           T T +K                      G +  ++  N     + +  +           
Sbjct: 122 TITASKRRKFFTARIWLRALVESELERHGENVTSS-FNAKGYYNFASRRLILLPTDDH-- 178

Query: 275 GWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF 311
               DH       +    E  + +R   +    C + 
Sbjct: 179 ---DDHLAVVCSFNRGDNERAECHRVTEATLHQCADL 212

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 220

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 2/58 (3%)

Query: 281 DNDCGDGSDEGKECHDKYRTCSSEEFACQ--NFKCIRKTYHCDGEDDCGDRSDEFNCN 336
           D +      + +    +   C    F C     +CI     CDG  DC +  DE    
Sbjct: 33  DPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 90

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 56.1 bits (134), Expect = 2e-09
 Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 6/128 (4%)

Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNG 269
           +E E  C  +      +CI     CDG+ DC DG+DE+    +       S         
Sbjct: 55  DEHESECRGD----VPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHVGSSYTGLATWT 110

Query: 270 RCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDR 329
            C +     DH       +       ++    ++  +          T    G  + G R
Sbjct: 111 SCEDLNP--DHAIVTITAAHRKSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKR 168

Query: 330 SDEFNCNY 337
                   
Sbjct: 169 ELLLAPLK 176

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 54.9 bits (131), Expect = 5e-09
 Identities = 24/110 (21%), Positives = 32/110 (29%), Gaps = 8/110 (7%)

Query: 231 KWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGN--GRCINTGWLCDHDNDCGDGS 288
           K   D D   +       + L   ++  C   +  C      CI+    CD + DC DGS
Sbjct: 29  KLTHDVDKKTIRQLKARISNL---EEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGS 85

Query: 289 DEGKEC--HDKYRTCSSEEFACQNFKCI-RKTYHCDGEDDCGDRSDEFNC 335
           DE  E    +     SS         C      H         R   F  
Sbjct: 86  DEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPN 135

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 52.2 bits (124), Expect = 4e-08
 Identities = 37/204 (18%), Positives = 56/204 (27%), Gaps = 24/204 (11%)

Query: 94  NGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRN--GKCISRMWSCDGDDDCGDNSD 151
             T +       +L  + R+   +   CD  +  CR    +CI  +  CDG+ DC D SD
Sbjct: 29  KLTHDVDKKTIRQL--KARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSD 86

Query: 152 EDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPNNRKCDEE 211
           EDP  C++ IT V      L              P   +V  T        PN       
Sbjct: 87  EDPETCSLNITHVGSSYTGLATWTSC----EDLNPDHAIVTITAAHRKSFFPNRVWLRAT 142

Query: 212 TEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRC 271
             +   E+                G  +           L  P +         C     
Sbjct: 143 LSYELDEH------DHTVSTTQLRGFYNFGKRE-----LLLAPLKGQSEGYGVICDFNLG 191

Query: 272 INTGWLCDHD-----NDCGDGSDE 290
            +    C          C   + +
Sbjct: 192 DDDHADCKIVVPSSLFVCAHFNAQ 215

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1 Length = 217

 Score = 44.9 bits (105), Expect = 1e-05
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 3/78 (3%)

Query: 262 DQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHD-KYRTCSSEEFACQN--FKCIRKTY 318
           D  +              HD D            + +   C   E  C+    +CI    
Sbjct: 14  DYLAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLL 73

Query: 319 HCDGEDDCGDRSDEFNCN 336
            CDGE DC D SDE    
Sbjct: 74  FCDGEKDCRDGSDEDPET 91

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 257 SSCSPDQFSC-GNGRCINTGWLCDHDNDCGDGSDE 290
             C  D+F C  +G CI   W CD D DC D SDE
Sbjct: 2   GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 48.0 bits (115), Expect = 3e-08
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 300 TCSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNCN 336
            C ++EF C+ +  CI   + CDG+ DC D SDE +C 
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 120 TCDGSKFFCR-NGKCISRMWSCDGDDDCGDNSDED 153
            C   +F CR +G CI   W CDGD DC D+SDE 
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1 Length = 42

 Score = 44.2 bits (105), Expect = 7e-07
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 9/45 (20%)

Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCP 254
              EF C  +       CIP +W CDGD DC+D +DE     +C 
Sbjct: 5   HTDEFQCRLDG-----LCIPLRWRCDGDTDCMDSSDE----KSCE 40

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 49.2 bits (118), Expect = 1e-08
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 299 RTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 335
             C+S +F C +   CI   Y CDG  DC D SDE  C
Sbjct: 5   LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGC 42

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 258 SCSPDQFSCGNGR-CINTGWLCDHDNDCGDGSDE 290
           +C+  QF C +G  CIN+ + CD   DC D SDE
Sbjct: 6   NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 117 KNITCDGSKFFCRNGK-CISRMWSCDGDDDCGDNSDE 152
             + C  ++F C +G  CI+  + CDG  DC DNSDE
Sbjct: 3   MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus} Length = 48

 Score = 41.9 bits (99), Expect = 5e-06
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 210 EETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPK 255
              +F C      + + CI  ++ CDG  DC D +DE      CP 
Sbjct: 8   TSAQFKCA-----DGSSCINSRYRCDGVYDCRDNSDE----AGCPT 44

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 257 SSCSPDQFSCGNG-RCINTGWLCDHDNDCGDGSDEGKEC 294
            +C P  FSC     C+   WLCD D DC DG+DE    
Sbjct: 5   KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 299 RTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 335
           +TC    F+C     C+ + + CDG+ DC D +DE   
Sbjct: 5   KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 43.1 bits (102), Expect = 2e-06
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 120 TCDGSKFFCRNG-KCISRMWSCDGDDDCGDNSDEDP 154
           TC  S F C     C+   W CDGD DC D +DE  
Sbjct: 6   TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI 41

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens} Length = 50

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 5/36 (13%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
            + F+C          C+P++WLCDGD DC DGADE
Sbjct: 9   PSSFSCP-----GTHVCVPERWLCDGDKDCADGADE 39

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 47.5 bits (113), Expect = 6e-08
 Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 257 SSCSPDQFSCG-----NGRCINTGWLCDHDNDCGDGSDE 290
           S C P QF C      +G C    WLCD   DC DG DE
Sbjct: 3   SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 44.8 bits (106), Expect = 5e-07
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCP 254
           + +C    +F C+E    +  +C P+ WLCDG PDC DG DE      C 
Sbjct: 2   SSRCPPG-QFRCSEPPGAH-GECYPQDWLCDGHPDCDDGRDE----WGCG 45

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 44.8 bits (106), Expect = 6e-07
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 5/42 (11%)

Query: 300 TCSSEEFAC-----QNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
            C   +F C      + +C  + + CDG  DC D  DE+ C 
Sbjct: 4   RCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1 Length = 47

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)

Query: 118 NITCDGSKFFCR-----NGKCISRMWSCDGDDDCGDNSDE 152
           +  C   +F C      +G+C  + W CDG  DC D  DE
Sbjct: 2   SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 5/41 (12%)

Query: 255 KQSSCSPDQFSC-----GNGRCINTGWLCDHDNDCGDGSDE 290
           +  SC P QF C      +G C    WLCD   DC DG DE
Sbjct: 3   EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 44.4 bits (105), Expect = 8e-07
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 297 KYRTCSSEEFACQNF-----KCIRKTYHCDGEDDCGDRSDEFNC 335
           ++ +C   +F C        +C  + + CDG  DC D  DE+ C
Sbjct: 3   EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 213 EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
           +F C+E       +C P+ WLCDG PDC DG DE
Sbjct: 11  QFRCSEPPG-AHGECYPQDWLCDGHPDCDDGRDE 43

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1 Length = 47

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 115 VAKNITCDGSKFFCR-----NGKCISRMWSCDGDDDCGDNSDE 152
           +++  +C   +F C      +G+C  + W CDG  DC D  DE
Sbjct: 1   ISEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 301 CSSEEFACQN--FKCIRKTYHCDGEDDCGDRSDEFNCN 336
           C   E +C     +CI  ++ CDGE+DC    DE NC 
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 259 CSPDQFSCGNG--RCINTGWLCDHDNDCGDGSDE 290
           C   + SCG    +CI   W CD +NDC  G DE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 39.3 bits (92), Expect = 4e-05
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%)

Query: 213 EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
           E +C  +      QCIP  W CDG+ DC  G DE
Sbjct: 5   EISCGAHST----QCIPVSWRCDGENDCDSGEDE 34

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5* Length = 39

 Score = 38.5 bits (90), Expect = 8e-05
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 121 CDGSKFFCRNG--KCISRMWSCDGDDDCGDNSDE 152
           C   +  C     +CI   W CDG++DC    DE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 45.5 bits (108), Expect = 3e-07
 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 300 TCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNC 335
            CS   F C N  KC+ +  HC+G DDCG+++DE NC
Sbjct: 6   KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 43.9 bits (104), Expect = 9e-07
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 258 SCSPDQFSCGNG-RCINTGWLCDHDNDCGDGSDE 290
            CS   F CGN  +C+     C+  +DCG+ +DE
Sbjct: 6   KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 42.0 bits (99), Expect = 4e-06
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 116 AKNITCDGSKFFCRNG-KCISRMWSCDGDDDCGDNSDED 153
           ++++ C    F C N  KC+ ++  C+G DDCG+ +DED
Sbjct: 2   SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADED 40

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens} Length = 43

 Score = 35.8 bits (83), Expect = 7e-04
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 223 NRAQCIPKKWLCDGDPDCVDGADE 246
           N  +C+P+   C+G  DC + ADE
Sbjct: 16  NITKCLPQLLHCNGVDDCGNQADE 39

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Length = 69

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 14/45 (31%), Positives = 17/45 (37%)

Query: 72  KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
           K     C   NGGC Q C         C+C E   L+ +G  C  
Sbjct: 2   KDDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 46

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens} Length = 554

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 209 DEETEFTCTENKAWNRAQCIPKKW---LCDGDP-DCVDGADENTTALNCPKQSSCSPDQF 264
           +    F C + K  +R+   P K+   +C GD  D    +   T    C +Q+ C  D  
Sbjct: 16  EWTDCFPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTT----CVRQAQCGQDFQ 71

Query: 265 SCGNGRCINTGWLCDHDNDCGDGSDEGK-ECHDKYRTCSSEEFACQNFKCIRKTYHCDGE 323
               GRC+    +C+ D DC DGSDE   E         S+       +     Y+   +
Sbjct: 72  CKETGRCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQ 131

Query: 324 DDCGDRSDE 332
           +D     D 
Sbjct: 132 EDAQSVYDA 140

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Length = 53

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 78  CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
           C   NGGC Q C         C+C E   L+ +G  C  
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 40

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Length = 59

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 78  CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
           CNI NG C Q C    +    C C E  +L    + C  
Sbjct: 2   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP 40

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 1/86 (1%)

Query: 252 NCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNF 311
              +   C         G C         + + GDG DE  +   +  T +SE     N 
Sbjct: 69  GDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEYQTFFNP 128

Query: 312 KCIRK-TYHCDGEDDCGDRSDEFNCN 336
                    C        +S E    
Sbjct: 129 ATFGSGEADCGLRPLFEKKSLEDKTE 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	100.0
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.88
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.88
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.87
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.87
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.86
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.86
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.84
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.84
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.84
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.83
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.83
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.82
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.8
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.52
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.42
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.34
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.25
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.24
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.23
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	99.23
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.22
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.2
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.2
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.2
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.19
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.18
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.18
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.17
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.17
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.16
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.16
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.14
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.14
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.13
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.1
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.1
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	99.1
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	99.09
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	99.07
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	99.04
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	99.01
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	99.01
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	98.99
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	98.7
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.68
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	98.63
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.61
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.6
2wph_E	59	Coagulation factor IXA light chain; serine proteas	98.59
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	98.54
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.48
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.27
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.18
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.13
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.1
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.05
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.97
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.8
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.79
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.79
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.76
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.53
1aut_L	114	Activated protein C; serine proteinase, plasma cal	97.4
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.31
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	97.27
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.23
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.14
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.57
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	96.54
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	96.3
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	96.02
2vh0_B	134	Activated factor XA light chain; serine protease,	95.48
1szb_A	170	Mannose binding lectin-associated serine protease-	95.28
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	95.27
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	95.15
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	95.04
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	94.46
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	94.3
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.22
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	93.77
1nzi_A	159	Complement C1S component; calcium, innate immunity	93.63
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.49
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	93.13
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	93.04
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	89.82
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	89.67
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	88.61
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	88.09
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	88.08
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	87.17
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	86.96
2bou_A	143	EGF-like module containing mucin-like hormone rece	86.9
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	86.26
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	86.23
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	85.54
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	85.52
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	84.74
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	84.17
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	84.11
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	84.11
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	83.69
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	82.15
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	81.96
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	81.89
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	81.25
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	81.15
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	81.1
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	80.22

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=5.3e-39  Score=332.29  Aligned_cols=197  Identities=38%  Similarity=0.876  Sum_probs=136.2

Q ss_pred             CCCCCccccCCCceeCCccccCCCCCCCCCCCCCCCccCCcccCCCCCCCCcccCC--CccccCCCCCCCCccceeeecC
Q psy954          120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPG--HVQITGVSQPPGIVMVMTTVQT  197 (337)
Q Consensus       120 ~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~~~C~~~~c~c~~~~~~~~~~~--~~C~~~~~~~~~~C~~~~~C~~  197 (337)
                      +|.+.+|+|.+|+||+..|+|||+.||+|+|||.+..|....|.    ..+|.|.+  ++||+.++.    |++..+|.+
T Consensus         5 ~C~~~~f~C~~g~ci~~~~~Cdg~~dC~d~sDE~~~~C~~~~C~----~~~f~C~~~~~~Ci~~~~~----Cdg~~dC~d   76 (699)
T 1n7d_A            5 RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCK----SGDFSCGGRVNRCIPQFWR----CDGQVDCDN   76 (699)
T ss_dssp             ---------------------------------------CCSCS----SSSCCCCC--CCCCCSSST----TSSSCCC-C
T ss_pred             CCCccceeCCCCcEEcHHhcCCCcccCCCCCCCCccccCCcCCC----CCccCCCCCCCceeCccee----cCCcccCCC
Confidence            58899999999999999999999999999999988778766543    57899976  489987653    999999999


Q ss_pred             CCCC-CCCCCCCCCCCceeeCCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCCCCCCCCCcEEeeCCceecCCC
Q psy954          198 GLMN-HPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGW  276 (337)
Q Consensus       198 ~~d~-~c~~~~C~~~~~f~C~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~~~~C~~~~f~C~~g~Ci~~~~  276 (337)
                      +.|| +|+..+|...+ |+|.++      +||+..|+|||+.||.|||||    .+|.. ..|++.+|+|.+++||+..|
T Consensus        77 gsDE~~C~~~~C~~~~-f~C~~g------~Ci~~~~~Cdg~~dC~dgsDE----~~C~~-~~C~~~~f~C~~~~Ci~~~~  144 (699)
T 1n7d_A           77 GSDEQGCPPKTCSQDE-FRCHDG------KCISRQFVCDSDRDCLDGSDE----ASCPV-LTCGPASFQCNSSTCIPQLW  144 (699)
T ss_dssp             CCTTTSCSSCCCCSSC-CCSSCC----------CCCTTCSSCCSSSSCSS----SSCCC-CCCCSSCCCCSSSCCCCTTS
T ss_pred             CcccCcccccccccCc-EEcCCC------CEecHHHcCCCcCcCCCCCcc----CCcCc-cccCccccCCCCCcccchhc
Confidence            9999 89888999887 999988      999999999999999999999    79986 78999999999999999999


Q ss_pred             cCCCCCCCCCCCCCC-CCCCCC------CCCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          277 LCDHDNDCGDGSDEG-KECHDK------YRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       277 ~CDg~~dC~d~sDE~-~~C~~~------~~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      +|||+.||.|+|||. .+|...      ...|...+|+|.+|.||+.+|+|||+.||.|||||.+|.
T Consensus       145 ~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~  211 (699)
T 1n7d_A          145 ACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA  211 (699)
T ss_dssp             TTCSSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSSCCCSTTCTTSSSCCSTTSCSSCSCC
T ss_pred             ccCCCCcCCCCcccccccCCCcccccCCCCCCCCcceecCCCceEechhccCCCCCCCCCcccccCC
Confidence            999999999999993 568632      347999999999999999999999999999999999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=100.00  E-value=6.3e-37  Score=316.77  Aligned_cols=199  Identities=37%  Similarity=0.828  Sum_probs=171.5

Q ss_pred             cccCCCCCCCCccccCC--CceeCCccccCCCCCCCCCCCCCCCccCCcccCCCCCCCCcccCCCccccCCCCCCCCccc
Q psy954          114 CVAKNITCDGSKFFCRN--GKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMV  191 (337)
Q Consensus       114 C~~~~~~C~~~~f~C~~--g~CI~~~~~CDG~~DC~DgsDE~~~~C~~~~c~c~~~~~~~~~~~~~C~~~~~~~~~~C~~  191 (337)
                      |..  .+|.+.+|+|.+  ++|||..|+|||+.||.|||||.+  |....|.    +.+|.|.+++||+.++    .|++
T Consensus        42 C~~--~~C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE~~--C~~~~C~----~~~f~C~~g~Ci~~~~----~Cdg  109 (699)
T 1n7d_A           42 CLS--VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG--CPPKTCS----QDEFRCHDGKCISRQF----VCDS  109 (699)
T ss_dssp             --C--CSCSSSSCCCCC--CCCCCSSSTTSSSCCC-CCCTTTS--CSSCCCC----SSCCCSSCC----CCC----TTCS
T ss_pred             cCC--cCCCCCccCCCCCCCceeCcceecCCcccCCCCcccCc--ccccccc----cCcEEcCCCCEecHHH----cCCC
Confidence            643  369999999997  489999999999999999999976  6655442    4789999999997765    3899


Q ss_pred             eeeecCCCCC-CCCCCCCCCCCceeeCCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCC-------CCCCCCCc
Q psy954          192 MTTVQTGLMN-HPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPK-------QSSCSPDQ  263 (337)
Q Consensus       192 ~~~C~~~~d~-~c~~~~C~~~~~f~C~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~-------~~~C~~~~  263 (337)
                      ..+|..+.|| +|...+|.+.+ |+|.++      +||+..|+|||+.||.|||||.+  .+|..       ...|...+
T Consensus       110 ~~dC~dgsDE~~C~~~~C~~~~-f~C~~~------~Ci~~~~~Cdg~~dC~dgsDE~~--~~C~~~~~~~~~~~~C~~~~  180 (699)
T 1n7d_A          110 DRDCLDGSDEASCPVLTCGPAS-FQCNSS------TCIPQLWACDNDPDCEDGSDEWP--QRCRGLYVFQGDSSPCSAFE  180 (699)
T ss_dssp             SCCSSSSCSSSSCCCCCCCSSC-CCCSSS------CCCCTTSTTCSSCCSSSSSSSSC--SSSSCCCCCSSCCCCSCSSS
T ss_pred             cCcCCCCCccCCcCccccCccc-cCCCCC------cccchhcccCCCCcCCCCccccc--ccCCCcccccCCCCCCCCcc
Confidence            9999999999 99989999877 999887      99999999999999999999943  46853       24799999


Q ss_pred             EEeeCCceecCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          264 FSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       264 f~C~~g~Ci~~~~~CDg~~dC~d~sDE~~~C~~~~~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      |+|.+|.||+..|+|||+.||.||||| .+|.  ...|.+.+|+|.++.||+..|+|||+.||.|||||.+|.
T Consensus       181 f~C~~g~Ci~~~~~CDg~~dC~dgsDE-~~C~--~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsde~~C~  250 (699)
T 1n7d_A          181 FHCLSGECIHSSWRCDGGPDCKDKSDE-ENCA--VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV  250 (699)
T ss_dssp             CCCSSSCCCSTTCTTSSSCCSTTSCSS-CSCC--CCCCCSSEEESSSSCEEETTCCSSSCCCSSSSCSSSSTT
T ss_pred             eecCCCceEechhccCCCCCCCCCccc-ccCC--CcccCCCcEecCCCceeeeecccCCCCCCCCCCccCCCC
Confidence            999999999999999999999999999 8997  457999999999999999999999999999999999884

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=3.4e-39  Score=336.69  Aligned_cols=198  Identities=37%  Similarity=0.869  Sum_probs=0.0

Q ss_pred             CCCCCCccccCCCceeCCccccCCCCCCCCCCCCCCCccCCcccCCCCCCCCcccCC--CccccCCCCCCCCccceeeec
Q psy954          119 ITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPG--HVQITGVSQPPGIVMVMTTVQ  196 (337)
Q Consensus       119 ~~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~~~C~~~~c~c~~~~~~~~~~~--~~C~~~~~~~~~~C~~~~~C~  196 (337)
                      .+|.++||+|.+|+||+..|+|||++||.|||||.+..|....|.    +.+|.|.+  ++||+.++.    |++..+|.
T Consensus        22 ~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~----~~~f~C~~~~~~Ci~~~~~----CDg~~dC~   93 (791)
T 3m0c_C           22 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCK----SGDFSCGGRVNRCIPQFWR----CDGQVDCD   93 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcCcCccCCCCCCEEehhhcCCCCccCCCCCcccccccccCccC----cCccccCCCCCCEeecccc----CCCCcCcC
Confidence            369999999999999999999999999999999998777766653    57899987  899987663    99999999


Q ss_pred             CCCCC-CCCCCCCCCCCceeeCCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCCCCCCCCCcEEeeCCceecCC
Q psy954          197 TGLMN-HPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTG  275 (337)
Q Consensus       197 ~~~d~-~c~~~~C~~~~~f~C~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~~~~C~~~~f~C~~g~Ci~~~  275 (337)
                      ++.|| +|...+|...+ |+|.++      +||+..|+|||+.||.|||||    .+|.. ..|+..+|+|.+++|||..
T Consensus        94 dgsDE~~C~~~~C~~~~-f~C~~g------~Ci~~~~~CDg~~dC~dgsDE----~~C~~-~~C~~~~f~C~~~~Ci~~~  161 (791)
T 3m0c_C           94 NGSDEQGCPPKTCSQDE-FRCHDG------KCISRQFVCDSDRDCLDGSDE----ASCPV-LTCGPASFQCNSSTCIPQL  161 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccCCccCccccCCe-EECCCC------CEECHHHcCCCcccCCCCccc----ccccc-cccccceeccCCCcccccc
Confidence            99999 89888998887 999988      999999999999999999999    78986 6899999999999999999


Q ss_pred             CcCCCCCCCCCCCCCC-CCCCC------CCCCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          276 WLCDHDNDCGDGSDEG-KECHD------KYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       276 ~~CDg~~dC~d~sDE~-~~C~~------~~~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      |+|||+.||.|+|||. .+|..      ....|...+|+|.+|.||+..|+|||+.||.|+|||.+|.
T Consensus       162 ~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~  229 (791)
T 3m0c_C          162 WACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA  229 (791)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccCCCCCcCCCCCCcccccCCCccccCCCCCCCCCCcccccCCceeccccccCCCCCCCCCCCCCCcc
Confidence            9999999999999993 25742      1357889999999999999999999999999999999885

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=100.00  E-value=2.4e-36  Score=315.21  Aligned_cols=196  Identities=37%  Similarity=0.809  Sum_probs=0.0

Q ss_pred             CCCCCCccccCC--CceeCCccccCCCCCCCCCCCCCCCccCCcccCCCCCCCCcccCCCccccCCCCCCCCccceeeec
Q psy954          119 ITCDGSKFFCRN--GKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQ  196 (337)
Q Consensus       119 ~~C~~~~f~C~~--g~CI~~~~~CDG~~DC~DgsDE~~~~C~~~~c~c~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~C~  196 (337)
                      .+|.+.+|+|.+  ++||+..|+|||+.||.|||||.+  |....|    ++.+|.|.+++||+.++.    |++..+|.
T Consensus        63 ~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE~~--C~~~~C----~~~~f~C~~g~Ci~~~~~----CDg~~dC~  132 (791)
T 3m0c_C           63 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG--CPPKTC----SQDEFRCHDGKCISRQFV----CDSDRDCL  132 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccCcCccccCCCCCCEeeccccCCCCcCcCCCcccCC--ccCccc----cCCeEECCCCCEECHHHc----CCCcccCC
Confidence            369999999998  899999999999999999999986  665544    257899999999987653    99999999


Q ss_pred             CCCCC-CCCCCCCCCCCceeeCCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCC-------CCCCCCCcEEeeC
Q psy954          197 TGLMN-HPNNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPK-------QSSCSPDQFSCGN  268 (337)
Q Consensus       197 ~~~d~-~c~~~~C~~~~~f~C~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~-------~~~C~~~~f~C~~  268 (337)
                      ++.|| +|...+|.+.+ |+|.++      +||+..|+|||+.||.|||||..  .+|..       ...|...+|+|.+
T Consensus       133 dgsDE~~C~~~~C~~~~-f~C~~~------~Ci~~~~~Cdg~~dC~dgsDE~~--~~C~~~~~~~~~~~~C~~~~f~C~~  203 (791)
T 3m0c_C          133 DGSDEASCPVLTCGPAS-FQCNSS------TCIPQLWACDNDPDCEDGSDEWP--QRCRGLYVFQGDSSPCSAFEFHCLS  203 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccccccccccccce-eccCCC------ccccccccCCCCCcCCCCCCccc--ccCCCccccCCCCCCCCCCcccccC
Confidence            99999 89888998887 999988      99999999999999999999942  26732       2578899999999


Q ss_pred             CceecCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          269 GRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       269 g~Ci~~~~~CDg~~dC~d~sDE~~~C~~~~~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      |.||+..|+|||+.||.|++|| .+|.  ...|.+.+|+|.++.||+..|+|||..||.|++||.+|.
T Consensus       204 g~Ci~~~~~CDg~~dC~dgsDE-~~C~--~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~  268 (791)
T 3m0c_C          204 GECIHSSWRCDGGPDCKDKSDE-ENCA--VATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV  268 (791)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             CceeccccccCCCCCCCCCCCC-CCcc--ccccCCCcceecCCceEecceecCChhccccccccCccc
Confidence            9999999999999999999999 8997  357999999999999999999999999999999999884

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.88  E-value=4.9e-23  Score=193.71  Aligned_cols=116  Identities=30%  Similarity=0.632  Sum_probs=105.0

Q ss_pred             CccCCCceEEEEc-CCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCccccCCCCCc
Q psy954            1 MRIATGASMVLIS-ATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCN   79 (337)
Q Consensus         1 ~~~dG~~R~vl~~-~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~~~npC~   79 (337)
                      ++++|++|++|+. .+.||+||+|+++.|||+||..++|++++|.+|....++...+ ..|++|+||++.+|+...|||+
T Consensus       193 ~d~dG~~~~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~-~~P~~i~v~~~~~q~~~~n~C~  271 (318)
T 3sov_A          193 SNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDI-FSPMDIHAFSQQRQPNATNPCG  271 (318)
T ss_dssp             EETTSCSCEEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECCC-SSCCCEEEECGGGSCCCCCTTT
T ss_pred             EcCCCCceEEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCceEEEeCCC-CCCcEEEEeccccccccccccc
Confidence            3689999999985 7899999999999999999999999999999999888887665 6899999999999987789999


Q ss_pred             CCCCCccccccCCCCC-cCeecCCCCcccccCCcccccC
Q psy954           80 IHNGGCAQSCHPGPNG-TAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        80 ~~nggCs~lCl~~~~~-~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      .+||||||||++.|.+ +++|+||.||.|.+|+++|...
T Consensus       272 ~~ng~Cs~~C~~~~~~~~~~C~C~~g~~l~~d~~~c~~~  310 (318)
T 3sov_A          272 IDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDG  310 (318)
T ss_dssp             TTGGGCSSEEEECSSTTSEEEECSTTCCBCTTSSCBCC-
T ss_pred             cCCCCcceEEecCCCCCCeEEECCCCCEECCCCCCCCCC
Confidence            9999999999999874 4899999999999999999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.88  E-value=1.2e-22  Score=193.25  Aligned_cols=114  Identities=29%  Similarity=0.556  Sum_probs=104.5

Q ss_pred             CccCCCceEEEE-cCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCccccCCCCCc
Q psy954            1 MRIATGASMVLI-SATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCN   79 (337)
Q Consensus         1 ~~~dG~~R~vl~-~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~~~npC~   79 (337)
                      ++++|++|++++ ..+.||+||||++++|||+||..++|++++|.+|...+++...+ ..|++|+|+|+.+|+...|||+
T Consensus       230 ~~~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~-~~p~gi~v~~~~~qp~~~n~C~  308 (349)
T 3v64_C          230 ANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL-HFPMDIHTLHPQRQPAGKNRCG  308 (349)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSC-SCCCCEEEECGGGSCCCCCTTT
T ss_pred             EeCCCCceEEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCCCccEEeccCC-CCCceEEEEccccCccccCccc
Confidence            357899998888 56899999999999999999999999999999999888887765 7899999999999987789999


Q ss_pred             CCCCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           80 IHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        80 ~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      .+||||+||||+.|.+ ++|+||+||+ ..|+++|.+.
T Consensus       309 ~~~g~C~~lCl~~~~~-~~C~C~~g~~-~~d~~~C~~~  344 (349)
T 3v64_C          309 DNNGGCTHLCLPSGQN-YTCACPTGFR-KINSHACALE  344 (349)
T ss_dssp             TGGGGCSSEEECCTTS-CEEECCTTEE-EETTTEEEEG
T ss_pred             CCCCCcccEeecCCCC-CeeECCCCCc-CCCCCcccch
Confidence            9999999999999986 9999999999 8899999863

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.87  E-value=2.2e-22  Score=151.54  Aligned_cols=79  Identities=51%  Similarity=1.196  Sum_probs=72.1

Q ss_pred             CCCCCCcEEeeCCceecCCCcCCCCCCCCCCCCCCCCCCCCCCCCCC-CcEEcCCCCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          257 SSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSS-EEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       257 ~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~d~sDE~~~C~~~~~~C~~-~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      .+|+..+|+|.+|+|||..|+|||+.||.|||||..+|.  ...|.+ .+|+|.+|+||+..|+|||+.||.|||||.+|
T Consensus         3 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~C~--~~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE~~C   80 (82)
T 2fyj_A            3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCA--YPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGC   80 (82)
T ss_dssp             SSSCTTEEETTSSCEEETTSSSSCSSSSCSTTTTTSSCC--CSSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSCSCC
T ss_pred             CCCCCCceEeCCCCEEeccccCCCcccCCCccccccccc--cccCCCCCceECCCCCeEcHHHccCCCCcCCCCccccCC
Confidence            468899999999999999999999999999999955786  457854 89999999999999999999999999999999


Q ss_pred             CC
Q psy954          336 NY  337 (337)
Q Consensus       336 ~~  337 (337)
                      ..
T Consensus        81 ~~   82 (82)
T 2fyj_A           81 SH   82 (82)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.87  E-value=4.9e-22  Score=191.48  Aligned_cols=112  Identities=29%  Similarity=0.565  Sum_probs=103.0

Q ss_pred             CccCCCceEEEE-cCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCccccCCCCCc
Q psy954            1 MRIATGASMVLI-SATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCN   79 (337)
Q Consensus         1 ~~~dG~~R~vl~-~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~~~npC~   79 (337)
                      ++++|++|++++ ..+.||+||+|++++|||+||..++|++++|.+|...+++...+ ..|++|+++++.+|+...|||.
T Consensus       273 ~d~dG~~~~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~-~~p~gi~v~~~~~q~~~~n~C~  351 (386)
T 3v65_B          273 ANLDGSHRKAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKL-HFPMDIHTLHPQRQPAGKNRCG  351 (386)
T ss_dssp             ECTTSCSCEEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSC-SCCCCEEEESGGGSCCCCCTTT
T ss_pred             EeCCCCeeEEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCcceEEEccCC-CCCceEEEEchhcCcCCcCccc
Confidence            367899998888 56899999999999999999999999999999999888888765 7899999999999987789999


Q ss_pred             CCCCCccccccCCCCCcCeecCCCCcccccCCcccc
Q psy954           80 IHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        80 ~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      .+||||+||||+.|.+ ++|+||+||+ ..|+++|.
T Consensus       352 ~~ng~C~~lCl~~~~~-~~C~C~~g~~-~~d~~~C~  385 (386)
T 3v65_B          352 DNNGGCTHLCLPSGQN-YTCACPTGFR-KINSHACA  385 (386)
T ss_dssp             TSCTTSSSEEECCSSS-CEEECCTTCB-CSSSSCCB
T ss_pred             cCCCCCCceeeeCCCC-CeeECCCCCc-CCCCCccC
Confidence            9999999999999986 9999999999 88999986

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.86  E-value=7e-22  Score=185.14  Aligned_cols=115  Identities=26%  Similarity=0.600  Sum_probs=102.8

Q ss_pred             CccCCCceEEEEc---CCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCccccCCCC
Q psy954            1 MRIATGASMVLIS---ATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNP   77 (337)
Q Consensus         1 ~~~dG~~R~vl~~---~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~~~np   77 (337)
                      ++++|++|++|+.   .+.||+||++++++|||+||..++|.+++|.+|....++...+ ..|++|+|+++.+|+...||
T Consensus       191 ~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~~~~~i~~~~-~~p~~i~v~~~~~qp~~~n~  269 (316)
T 1ijq_A          191 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQPRGVNW  269 (316)
T ss_dssp             EETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSC-SCCCCEEEESGGGSCCCCCT
T ss_pred             EecCCCceEEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCcceEEEecCC-CCceEEEEeccccCCccccc
Confidence            3678999999873   4689999999999999999999999999999999888887665 67999999999998877799


Q ss_pred             CcCC---CCCccccccCCCC-----CcCeecCCCCcccccCCccccc
Q psy954           78 CNIH---NGGCAQSCHPGPN-----GTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        78 C~~~---nggCs~lCl~~~~-----~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      |..+   ||+|+|||++.|.     ++++|+||.||+|.+|+++|.+
T Consensus       270 C~~~~~~ng~Cs~~C~~~p~~~~~~~~~~C~C~~g~~l~~d~~~C~~  316 (316)
T 1ijq_A          270 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT  316 (316)
T ss_dssp             TSSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEEC
T ss_pred             ccccccCCCCcCcccCCCccccCCCCCeEeeCCCCCEECCCCCccCC
Confidence            9998   9999999999873     4589999999999999999964

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.86  E-value=7.3e-22  Score=191.25  Aligned_cols=116  Identities=26%  Similarity=0.605  Sum_probs=103.5

Q ss_pred             CccCCCceEEEEc---CCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCccccCCCC
Q psy954            1 MRIATGASMVLIS---ATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNP   77 (337)
Q Consensus         1 ~~~dG~~R~vl~~---~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~~~np   77 (337)
                      ++++|++|++|+.   .+.|||||+|++++|||+||..++|++++|.+|+...++...+ ..|++|+|||+.+|+...||
T Consensus       273 ~d~dG~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~-~~p~~i~v~~~~~qp~~~n~  351 (400)
T 3p5b_L          273 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQPRGVNW  351 (400)
T ss_dssp             EETTSCCCEEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCCCEEEECSC-SCEEEEEEESGGGSCCCCCS
T ss_pred             EeCCCCccEEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCceEEEecCC-CCCceEEEEeeccCCCCCCc
Confidence            3689999999984   4799999999999999999999999999999999988887765 67999999999999877899


Q ss_pred             Cc---CCCCCccccccCCCCC-----cCeecCCCCcccccCCcccccC
Q psy954           78 CN---IHNGGCAQSCHPGPNG-----TAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        78 C~---~~nggCs~lCl~~~~~-----~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      |.   .+||+|+|||++.|..     .++|+||.||.|.+|+++|.+.
T Consensus       352 c~~~~~~ng~C~~lC~~~~~~~~~~~~~~C~C~~g~~l~~d~~~C~~~  399 (400)
T 3p5b_L          352 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLTE  399 (400)
T ss_dssp             SSSSSSGGGGCSSEEEECCCSSTTCCSEEEECCTTCEECTTSSSEESC
T ss_pred             cccccCCCcCcCCeecCCCcccCCCCCeeEECCCCCEECCCCCccCCC
Confidence            95   4799999999998752     4899999999999999999863

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.84  E-value=2.9e-22  Score=149.93  Aligned_cols=76  Identities=43%  Similarity=1.029  Sum_probs=70.0

Q ss_pred             CCCCCcEEeeCCceecCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCC--CCC
Q psy954          258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE--FNC  335 (337)
Q Consensus       258 ~C~~~~f~C~~g~Ci~~~~~CDg~~dC~d~sDE~~~C~~~~~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE--~~C  335 (337)
                      .|+..+|+|.+|+||+..|+|||+.||.||||| .+|.  ...|...+|+|.+|+||+..|+|||+.||.|||||  .+|
T Consensus         2 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE-~~C~--~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~~~C   78 (80)
T 2fcw_B            2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCP--VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC   78 (80)
T ss_dssp             CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTT-TTHH--HHHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGGGC
T ss_pred             CCCCCccCCCCCCEEeeecccCCcccCCCcccc-cccc--cccCCceeeECCCCCEEecccccCCCcCCCCCCCcCcccC
Confidence            478899999999999999999999999999999 8885  34688899999999999999999999999999999  777


Q ss_pred             C
Q psy954          336 N  336 (337)
Q Consensus       336 ~  336 (337)
                      .
T Consensus        79 ~   79 (80)
T 2fcw_B           79 R   79 (80)
T ss_dssp             -
T ss_pred             C
Confidence            4

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.84  E-value=1.8e-21  Score=198.82  Aligned_cols=115  Identities=24%  Similarity=0.495  Sum_probs=103.4

Q ss_pred             CccCCCceEEEE-cCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCcc-ccCCCCC
Q psy954            1 MRIATGASMVLI-SATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQ-KCSVNPC   78 (337)
Q Consensus         1 ~~~dG~~R~vl~-~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q-~~~~npC   78 (337)
                      +++||++|++|. ..+.|||||||++++||||||...+|++++|.+|...++++..+ ..|++|++++...+ +...|||
T Consensus       504 ~~~dG~~r~~~~~~~~~~P~glav~~~~ly~tD~~~~~i~~~~k~~G~~~~~i~~~~-~~~~~i~~~~~~~~~~~~~n~c  582 (628)
T 4a0p_A          504 SDLSGANRIVLEDSNILQPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARI-AQLSDIHAVKELNLQEYRQHPC  582 (628)
T ss_dssp             EETTSCSCEEEECSSCSCEEEEEEETTEEEEEETTTTEEEEEETTSSSCCEEEECCC-TTEEEEEEECCCCHHHHHHSTT
T ss_pred             EeCCCCceEEEEcCCCCCcEEEEEECCEEEEEECCCCeEEEEECcCCCCcEEEeccC-CCCcceEEEeecccCccccccC
Confidence            368999999998 67899999999999999999999999999999999998888776 57899999987653 3456999


Q ss_pred             cCCCCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           79 NIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        79 ~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      +.+||||+|||++.+.+.++|+||.||+|.+|+++|..
T Consensus       583 ~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~~~~  620 (628)
T 4a0p_A          583 AQDNGGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGG  620 (628)
T ss_dssp             TTGGGGCSSEEEECTTSCEEEECCTTEEECTTSSCEEE
T ss_pred             CCCCCCcchhcccCCCCCeeeeCCCCCEECCCCCcCCC
Confidence            99999999999999887789999999999999999974

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.84  E-value=1.9e-21  Score=198.42  Aligned_cols=112  Identities=26%  Similarity=0.546  Sum_probs=101.1

Q ss_pred             CccCCCceEEEE-cCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCccccCCCCCc
Q psy954            1 MRIATGASMVLI-SATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCN   79 (337)
Q Consensus         1 ~~~dG~~R~vl~-~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~~~npC~   79 (337)
                      ++++|++|++|+ ..+.|||||||++++||||||..++|++++|.+| .+++++..+ ..+++|++|++.+|+ ..|||+
T Consensus       506 ~~~dG~~~~~~~~~~l~~P~glav~~~~ly~tD~~~~~I~~~~k~~g-~~~~~~~~~-~~~~~i~~~~~~~~~-~~~~C~  582 (619)
T 3s94_A          506 MNTDGTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRRSIERVHKRSA-EREVIIDQL-PDLMGLKATNVHRVI-GSNPCA  582 (619)
T ss_dssp             EESSSCCCEEEEECCCCSSCCEEEETTEEEEECTTSSCEEEEESSSC-CEEEEECSC-CCEEEEEEEESSCCC-CCCGGG
T ss_pred             EecCCCceEEEeccCCCCcEEEEEECCEEEEeecCCCeEEEEEcCCC-ceEEEecCC-CCCceeeeccccccc-ccccCC
Confidence            367999999988 6789999999999999999999999999999999 566666665 679999999998777 459999


Q ss_pred             CCCCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           80 IHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        80 ~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      .+||||+|+|++.+.+ ++|+||.||+|.+|+++|.+
T Consensus       583 ~~ng~C~~~C~~~~~~-~~C~C~~g~~l~~d~~~C~~  618 (619)
T 3s94_A          583 EENGGCSHLCLYRPQG-LRCACPIGFELISDMKTCIV  618 (619)
T ss_dssp             SGGGGCSSEEEEETTE-EEEECCTTCEECSSTTCEEC
T ss_pred             CCCCChhHhhccCCCC-eEEECCCCCEECCCCCcCCC
Confidence            9999999999999987 99999999999999999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.83  E-value=4.3e-21  Score=196.03  Aligned_cols=114  Identities=32%  Similarity=0.523  Sum_probs=105.0

Q ss_pred             CccCCCceEEEEcCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCccccCCCCCcC
Q psy954            1 MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCNI   80 (337)
Q Consensus         1 ~~~dG~~R~vl~~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~~~npC~~   80 (337)
                      ++++|++|+++...+.||||||+++++||||||..++|++++|.+|+.++++...+ ..|++|+|||+.+|+.. |||+.
T Consensus       193 ~d~dG~~~~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~-~~p~~i~v~~~~~q~~~-n~C~~  270 (628)
T 4a0p_A          193 SNMLGLNREVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNRTIIQGHL-DYVMDILVFHSSRQSGW-NECAS  270 (628)
T ss_dssp             EETTSCSCEEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCSCEEEECSC-CSCCEEEEECGGGSCCC-CTTTT
T ss_pred             EcCCCCceEEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCCceEEEecCC-CCcceeeeeeecccccc-eEecc
Confidence            36889999887788999999999999999999999999999999999998888776 67999999999998865 99999


Q ss_pred             CCCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           81 HNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        81 ~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      +||+|+|+|++.+.++++|+||.||.|..|+++|.+
T Consensus       271 ~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~  306 (628)
T 4a0p_A          271 SNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSA  306 (628)
T ss_dssp             TGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEEC
T ss_pred             CCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCcc
Confidence            999999999999966699999999999999999975

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.83  E-value=8.2e-21  Score=142.93  Aligned_cols=78  Identities=51%  Similarity=1.181  Sum_probs=69.5

Q ss_pred             CCCCCCCceeeCCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCCCCCCC-CCcEEeeCCceecCCCcCCCCCCC
Q psy954          206 RKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCS-PDQFSCGNGRCINTGWLCDHDNDC  284 (337)
Q Consensus       206 ~~C~~~~~f~C~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~~~~C~-~~~f~C~~g~Ci~~~~~CDg~~dC  284 (337)
                      ++|.+.+ |+|.++      +||++.|+|||+.||.|||||.   .+|.. ..|. ..+|+|.+|+||+..|+|||+.||
T Consensus         3 ~~C~~~~-f~C~~g------~Ci~~~~~CDg~~DC~DgsDE~---~~C~~-~~C~~~~~f~C~~g~CI~~~~~CDG~~DC   71 (82)
T 2fyj_A            3 RTCPPNQ-FSCASG------RCIPISWTCDLDDDCGDRSDES---ASCAY-PTCFPLTQFTCNNGRCININWRCDNDNDC   71 (82)
T ss_dssp             SSSCTTE-EETTSS------CEEETTSSSSCSSSSCSTTTTT---SSCCC-SSSCSSSEEECTTSCEEETTCBSSSSBCC
T ss_pred             CCCCCCc-eEeCCC------CEEeccccCCCcccCCCccccc---ccccc-ccCCCCCceECCCCCeEcHHHccCCCCcC
Confidence            4576665 999988      9999999999999999999994   47876 6785 499999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q psy954          285 GDGSDEGKECH  295 (337)
Q Consensus       285 ~d~sDE~~~C~  295 (337)
                      .||||| .+|.
T Consensus        72 ~DgSDE-~~C~   81 (82)
T 2fyj_A           72 GDNSDE-AGCS   81 (82)
T ss_dssp             SSSSSC-SCCC
T ss_pred             CCCccc-cCCC
Confidence            999999 7774

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.82  E-value=6.8e-21  Score=194.24  Aligned_cols=115  Identities=30%  Similarity=0.639  Sum_probs=98.1

Q ss_pred             CccCCCceEEEEc-CCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCccccCCCCCc
Q psy954            1 MRIATGASMVLIS-ATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKCSVNPCN   79 (337)
Q Consensus         1 ~~~dG~~R~vl~~-~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~~~npC~   79 (337)
                      ++++|++|++|+. .+.|||||++++++||||||.+++|++++|.+|....++...+ ..|++|+|||+.+|+...|||+
T Consensus       198 ~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~~d~~tg~~~~~i~~~~-~~p~~i~v~~~~~qp~~~n~C~  276 (619)
T 3s94_A          198 SNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEGLREIHSDI-FSPMDIHAFSQQRQPNATNPCG  276 (619)
T ss_dssp             ESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEEEESSSCCCCEECCSCC-CCCSEEEECCGGGSCCCCCTTT
T ss_pred             ecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEEEECCCCcccEEEecCC-CCCcEEEEEccccCCCcccccc
Confidence            3689999999885 7899999999999999999999999999999999888777665 6799999999999998789999


Q ss_pred             CCCCCccccccCCCC-CcCeecCCCCcccccCCccccc
Q psy954           80 IHNGGCAQSCHPGPN-GTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        80 ~~nggCs~lCl~~~~-~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      .+||+|||||+++|. .+++|+||.||.|..|+++|.+
T Consensus       277 ~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~  314 (619)
T 3s94_A          277 IDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKD  314 (619)
T ss_dssp             TTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCS
T ss_pred             CCCCcccceEECCCCCCCceEeCCchheecccCcccCC
Confidence            999999999999885 3599999999999999999975

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.80  E-value=7.7e-21  Score=142.18  Aligned_cols=72  Identities=46%  Similarity=1.196  Sum_probs=66.0

Q ss_pred             CCCCCCceeeCCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCCCCCCCCCcEEeeCCceecCCCcCCCCCCCCC
Q psy954          207 KCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGD  286 (337)
Q Consensus       207 ~C~~~~~f~C~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~d  286 (337)
                      +|.+.+ |+|.++      +||+..|+|||+.||.|||||    .+|.. ..|+..+|+|.+++|||..|+|||+.||.|
T Consensus         2 ~C~~~~-F~C~~g------~CI~~~~~CDg~~DC~DgSDE----~~C~~-~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~d   69 (80)
T 2fcw_B            2 TCSQAE-FRCHDG------KCISRQFVCDSDRDCLDGSDE----ASCPV-LTCGPASFQCNSSTCIPQLWACDNDPDCED   69 (80)
T ss_dssp             CCCTTE-EECTTS------CEEEGGGTTSSSCCSTTCTTT----TTHHH-HHCCTTEEECTTSCEEEGGGTTSSSCCSTT
T ss_pred             CCCCCc-cCCCCC------CEEeeecccCCcccCCCcccc----ccccc-ccCCceeeECCCCCEEecccccCCCcCCCC
Confidence            455555 999987      999999999999999999999    78864 578899999999999999999999999999


Q ss_pred             CCCC
Q psy954          287 GSDE  290 (337)
Q Consensus       287 ~sDE  290 (337)
                      ||||
T Consensus        70 gsDE   73 (80)
T 2fcw_B           70 GSDE   73 (80)
T ss_dssp             CGGG
T ss_pred             CCCc
Confidence            9999

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.52  E-value=3.3e-15  Score=150.69  Aligned_cols=95  Identities=35%  Similarity=0.645  Sum_probs=80.4

Q ss_pred             eeecCCCcccCCCCCCCCCccccccCCCCCCCCCCCCcEEeeCCceecCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q psy954          226 QCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEE  305 (337)
Q Consensus       226 ~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~d~sDE~~~C~~~~~~C~~~~  305 (337)
                      .+++..+.+|+..+|.+.+++      |     +...+|+|.++.||+..|+|||+.||.|+||| .+|.    .|+..+
T Consensus       182 ~~~~~~h~~DagV~C~~~~~~------c-----~~~~~~~C~~~~ci~~~~~Cdg~~dC~d~sDE-~~C~----~c~~~~  245 (565)
T 2xrc_A          182 KRRTMGYQDFADVVCYTQKAD------S-----PMDDFFQCVNGKYISQMKACDGINDCGDQSDE-LCCK----ACQGKG  245 (565)
T ss_dssp             CCCCCSSCCCCEEEBCCC--------------------CBCTTSCBCCTTSTTSSSCCSSSSSSS-SSBS----SCSSSC
T ss_pred             cccccccccCCceeccccccC------C-----CCcCeeECCCCCccCHHHcCCCcccCCCCccc-cccc----ccCCCc
Confidence            567778899999999987766      3     23456999999999999999999999999999 8897    499999


Q ss_pred             EEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          306 FACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       306 f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      |+|.++.||+..++|||..||.||+||.+|.
T Consensus       246 ~~C~~~~C~~~~~~cdG~~dC~~gsDE~~C~  276 (565)
T 2xrc_A          246 FHCKSGVCIPSQYQCNGEVDCITGEDEVGCA  276 (565)
T ss_dssp             EEETTTEEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred             eecCCCcccCccccCCCcccCCCCccccCcC
Confidence            9999999999999999999999999999985

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.42  E-value=8.4e-14  Score=140.38  Aligned_cols=103  Identities=29%  Similarity=0.558  Sum_probs=83.4

Q ss_pred             ccccCCCceeCCccccCCCCCCCCCCCCCCCccCCcccCCCCCCCCcccCCCccccCCCCCCCCccceeeecCCCCCCCC
Q psy954          125 KFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCNVQITGVSQPPGELGVPGHVQITGVSQPPGIVMVMTTVQTGLMNHPN  204 (337)
Q Consensus       125 ~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~~~C~~~~c~c~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~C~~~~d~~c~  204 (337)
                      -|.|..+.++...+.+|+..+|.+.+++-                                                   
T Consensus       175 l~~C~~~~~~~~~h~~DagV~C~~~~~~c---------------------------------------------------  203 (565)
T 2xrc_A          175 LAECTFTKRRTMGYQDFADVVCYTQKADS---------------------------------------------------  203 (565)
T ss_dssp             GGGSEEECCCCCSSCCCCEEEBCCC-------------------------------------------------------
T ss_pred             hhhcccCcccccccccCCceeccccccCC---------------------------------------------------
Confidence            47787766777788888888887665441                                                   


Q ss_pred             CCCCCCCCceeeCCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCCCCCCCCCcEEeeCCceecCCCcCCCCCCC
Q psy954          205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGRCINTGWLCDHDNDC  284 (337)
Q Consensus       205 ~~~C~~~~~f~C~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC  284 (337)
                          ...++|+|.++      +||+..|+|||+.||.|+|||    .+|..   |+..+|+|.++.||+..++|||..||
T Consensus       204 ----~~~~~~~C~~~------~ci~~~~~Cdg~~dC~d~sDE----~~C~~---c~~~~~~C~~~~C~~~~~~cdG~~dC  266 (565)
T 2xrc_A          204 ----PMDDFFQCVNG------KYISQMKACDGINDCGDQSDE----LCCKA---CQGKGFHCKSGVCIPSQYQCNGEVDC  266 (565)
T ss_dssp             ---------CBCTTS------CBCCTTSTTSSSCCSSSSSSS----SSBSS---CSSSCEEETTTEEECGGGTTSSSCCS
T ss_pred             ----CCcCeeECCCC------CccCHHHcCCCcccCCCCccc----ccccc---cCCCceecCCCcccCccccCCCcccC
Confidence                11123889877      999999999999999999999    78864   99999999999999999999999999


Q ss_pred             CCCCCCCCCCCC
Q psy954          285 GDGSDEGKECHD  296 (337)
Q Consensus       285 ~d~sDE~~~C~~  296 (337)
                      .|++|| .+|..
T Consensus       267 ~~gsDE-~~C~~  277 (565)
T 2xrc_A          267 ITGEDE-VGCAG  277 (565)
T ss_dssp             SSCTTS-SSCC-
T ss_pred             CCCccc-cCcCC
Confidence            999999 88864

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.34  E-value=5.7e-13  Score=87.99  Aligned_cols=40  Identities=50%  Similarity=1.175  Sum_probs=36.1

Q ss_pred             CCCCCCccccCCCceeCCccccCCCCCCCCCCCCCCCccC
Q psy954          119 ITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCN  158 (337)
Q Consensus       119 ~~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~~~C~  158 (337)
                      ..|.+.+|+|.+|+||+..|+|||+.||.|||||.+..|.
T Consensus         4 ~~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c~C~   43 (45)
T 1d2l_A            4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH   43 (45)
T ss_dssp             CBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTTTCC
T ss_pred             CcCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCCCcCC
Confidence            3588999999999999999999999999999999985543

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.25  E-value=2.2e-12  Score=81.66  Aligned_cols=35  Identities=46%  Similarity=1.129  Sum_probs=32.9

Q ss_pred             CCCCCccccCCCceeCCccccCCCCCCCCCCCCCC
Q psy954          120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       120 ~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      +|.+.+|+|.+|+||+..|+|||+.||.|||||.+
T Consensus         1 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~   35 (37)
T 1ajj_A            1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCCCceEcCCCCeechhhccCCCCCCCCCccccC
Confidence            37889999999999999999999999999999975

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.24  E-value=3.8e-12  Score=80.58  Aligned_cols=37  Identities=49%  Similarity=1.039  Sum_probs=34.7

Q ss_pred             CCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       300 ~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      .|...+|+|.+|+||+..|+|||+.||.|||||.+|+
T Consensus         1 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~   37 (37)
T 1ajj_A            1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CCCCCceEcCCCCeechhhccCCCCCCCCCccccCCC
Confidence            3678899999999999999999999999999999985

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.23  E-value=6.5e-12  Score=81.80  Aligned_cols=36  Identities=50%  Similarity=1.038  Sum_probs=33.2

Q ss_pred             CCCCCCccccCC-CceeCCccccCCCCCCCCCCCCCC
Q psy954          119 ITCDGSKFFCRN-GKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       119 ~~C~~~~f~C~~-g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      ..|.+.+|+|.+ |+||+..|+|||+.||.|||||.+
T Consensus         2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~   38 (42)
T 1cr8_A            2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS   38 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT
T ss_pred             CCCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccC
Confidence            358899999985 899999999999999999999986

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=99.23  E-value=1.4e-12  Score=85.91  Aligned_cols=38  Identities=50%  Similarity=1.299  Sum_probs=34.8

Q ss_pred             CCCCCccccCCCceeCCccccCCCCCCCCCCCCCCCcc
Q psy954          120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC  157 (337)
Q Consensus       120 ~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~~~C  157 (337)
                      .|.+.+|+|.+|+||+..|+|||+.||.|+|||....|
T Consensus         4 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C   41 (44)
T 1j8e_A            4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC   41 (44)
T ss_dssp             SSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHHHH
T ss_pred             CCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCCccc
Confidence            58899999999999999999999999999999986444

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.22  E-value=1.1e-13  Score=121.13  Aligned_cols=111  Identities=25%  Similarity=0.437  Sum_probs=82.1

Q ss_pred             eecCCCCC-CCCCCCCCCCCceee--CCCCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCCCCCCCCCcEEeeCCc
Q psy954          194 TVQTGLMN-HPNNRKCDEETEFTC--TENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGNGR  270 (337)
Q Consensus       194 ~C~~~~d~-~c~~~~C~~~~~f~C--~~~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~~~~C~~~~f~C~~g~  270 (337)
                      .|..+.|| +|  .+|.+.+ |+|  .++      +|||..|+|||..||.|||||    .+|+. .+|...+|+|.   
T Consensus        42 ~c~d~sDE~~C--~~C~~~~-F~C~~~~g------~CIp~~~~CDG~~DC~DgSDE----~~C~~-~~C~~~~F~c~---  104 (215)
T 2gtl_O           42 SLRHRVEELED--PSCDEHE-HQCGGDDP------QCISKLFVCDGHNDCRNGEDE----KDCTL-PTKAGDKFIGD---  104 (215)
T ss_dssp             HHHHHHHHHSC--CSSCTTE-EECCSSSC------CEEEGGGTTSSSCCSSSCHHH----HCCCC-SSCTTCEEEEE---
T ss_pred             cCCcchhhccC--CCCCCcc-eeeCCCCC------cCccccccCCCCCcCCCcccc----cCCCC-CCcCCCceeee---
Confidence            34444555 56  3577765 999  566      999999999999999999999    79987 78999999883   


Q ss_pred             eecCCCcCCCCCCCCCCCCCCCCCCCCCCCCC--CCcEEcCCC---Ceec-----------CCCCCCCcCCCCCCCCCCC
Q psy954          271 CINTGWLCDHDNDCGDGSDEGKECHDKYRTCS--SEEFACQNF---KCIR-----------KTYHCDGEDDCGDRSDEFN  334 (337)
Q Consensus       271 Ci~~~~~CDg~~dC~d~sDE~~~C~~~~~~C~--~~~f~C~~~---~Ci~-----------~~~~CDg~~dC~dgsDE~~  334 (337)
                        +     ++. .|.+.+++ ..|.   ..|+  ..+|.|.++   .||.           .+|.|||+.+  +|++|..
T Consensus       105 --~-----~~~-~C~~~~~~-~~c~---~~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~  170 (215)
T 2gtl_O          105 --V-----CFD-HCTKRRPE-HMTL---AFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS--FADHRLT  170 (215)
T ss_dssp             --E-----EEE-SSCSSCCS-EEEE---EEEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEE
T ss_pred             --E-----CCC-cccCCCCC-Ccee---eeeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec--CCcceee
Confidence              2     122 37778888 4553   1233  355777665   3777           8899999999  6899876


Q ss_pred             C
Q psy954          335 C  335 (337)
Q Consensus       335 C  335 (337)
                      |
T Consensus       171 ~  171 (215)
T 2gtl_O          171 I  171 (215)
T ss_dssp             E
T ss_pred             e
Confidence            5

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.20  E-value=1.8e-12  Score=87.73  Aligned_cols=36  Identities=47%  Similarity=1.116  Sum_probs=34.2

Q ss_pred             CCCCCCccccCCCceeCCccccCCCCCCCCCCCCCC
Q psy954          119 ITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       119 ~~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      .+|.+++|+|.+|+||+..|+|||..||+|||||.+
T Consensus         5 ~~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~   40 (52)
T 2m0p_A            5 ASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKN   40 (52)
T ss_dssp             CSSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHS
T ss_pred             CCCCCCceECCCCCEEecCccCCCCCCCCCCCcccc
Confidence            469999999999999999999999999999999986

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.20  E-value=6.3e-12  Score=82.71  Aligned_cols=36  Identities=53%  Similarity=1.179  Sum_probs=32.9

Q ss_pred             CCCCCCccccCCCceeCCccccCCCCCCCCCCCCCC
Q psy954          119 ITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       119 ~~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      ..|.+.+|+|.+|+||+..|+|||+.||+|||||.+
T Consensus         6 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~   41 (44)
T 3a7q_B            6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDD   41 (44)
T ss_dssp             --CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSC
T ss_pred             CCCCCCceEcCCCCEeChhhccCCCCCCCCCccccC
Confidence            358899999999999999999999999999999976

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.20  E-value=8e-12  Score=81.77  Aligned_cols=36  Identities=42%  Similarity=0.997  Sum_probs=33.8

Q ss_pred             CCCCCCccccCC-CceeCCccccCCCCCCCCCCCCCC
Q psy954          119 ITCDGSKFFCRN-GKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       119 ~~C~~~~f~C~~-g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      ..|.+++|+|.+ |+||+..|+|||+.||+|||||.+
T Consensus         5 ~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~   41 (43)
T 2jm4_A            5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDN   41 (43)
T ss_dssp             CSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSS
T ss_pred             CCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCC
Confidence            469999999999 899999999999999999999975

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.19  E-value=3e-12  Score=95.26  Aligned_cols=69  Identities=32%  Similarity=0.698  Sum_probs=55.9

Q ss_pred             CCCCCCCCCCCceeeCC-CCCCCCCeeecCCCcccCCCCCCCCCccccccCCCCCCCCCCCCcEEeeC--CceecCCCcC
Q psy954          202 HPNNRKCDEETEFTCTE-NKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCPKQSSCSPDQFSCGN--GRCINTGWLC  278 (337)
Q Consensus       202 ~c~~~~C~~~~~f~C~~-~~~~~~~~Ci~~~~~CDg~~dC~dgsDE~~~~~~C~~~~~C~~~~f~C~~--g~Ci~~~~~C  278 (337)
                      +|+...|.+.+ |+|.+ +      +|||.+|+|||+.||.|||||.. ..+|+...+|...+|+|.+  +.||+..+..
T Consensus         3 ~C~~~~C~~~~-f~C~~~g------~CIp~~~~CDg~~DC~DgsDE~~-~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~g   74 (80)
T 2kny_A            3 KLEGKTCGPSS-FSCPGTH------VCVPERWLCDGDKDCADGADESI-AAGCLYNSTGSGSGSGSTEELRVRLASHLRK   74 (80)
T ss_dssp             SCSSCCCSSSE-EECTTSS------CEEEHHHHTTSSCCSSSSTTTSG-GGTCSSSSTTTTCSSCHHHHHHHHTTTTTTT
T ss_pred             CCCCCCCCCCc-eecCCCC------eEcChhhcCCCCCCCCCCCcccc-ccCCCCCcccCcccchhhhHHHHHHHHHHHH
Confidence            46667888776 99984 5      99999999999999999999931 1268755789999999998  7899876654

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.18  E-value=1.3e-11  Score=79.02  Aligned_cols=34  Identities=35%  Similarity=0.962  Sum_probs=31.9

Q ss_pred             CCCCccccCC--CceeCCccccCCCCCCCCCCCCCC
Q psy954          121 CDGSKFFCRN--GKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       121 C~~~~f~C~~--g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      |.+.+|+|.+  |+||+..|+|||++||.|||||.+
T Consensus         1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~   36 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTT
T ss_pred             CCCCceecCCCCCCEeCccccCCCcccCcCCccccc
Confidence            6788999997  899999999999999999999976

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.18  E-value=2.9e-12  Score=95.37  Aligned_cols=69  Identities=29%  Similarity=0.559  Sum_probs=58.0

Q ss_pred             CCCCCCCCCCCCcEEee-CCceecCCCcCCCCCCCCCCCCCCC---CCCCCCCCCCCCcEEcCC--CCeecCCCCCCC
Q psy954          251 LNCPKQSSCSPDQFSCG-NGRCINTGWLCDHDNDCGDGSDEGK---ECHDKYRTCSSEEFACQN--FKCIRKTYHCDG  322 (337)
Q Consensus       251 ~~C~~~~~C~~~~f~C~-~g~Ci~~~~~CDg~~dC~d~sDE~~---~C~~~~~~C~~~~f~C~~--~~Ci~~~~~CDg  322 (337)
                      .+|+. ..|+..+|+|. ++.|||..|+|||+.||.||||| .   .|.. ...|...+|+|.+  ++||+..++...
T Consensus         2 ~~C~~-~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE-~~~~~C~~-~~~C~~~~f~c~~~~~~ci~~~~~gLr   76 (80)
T 2kny_A            2 SKLEG-KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE-SIAAGCLY-NSTGSGSGSGSTEELRVRLASHLRKLR   76 (80)
T ss_dssp             CSCSS-CCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTT-SGGGTCSS-SSTTTTCSSCHHHHHHHHTTTTTTTTS
T ss_pred             CCCCC-CCCCCCceecCCCCeEcChhhcCCCCCCCCCCCcc-ccccCCCC-CcccCcccchhhhHHHHHHHHHHHHHH
Confidence            36765 78999999998 68999999999999999999999 5   4652 3689999999998  789988776543

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.17  E-value=1.4e-11  Score=81.02  Aligned_cols=38  Identities=42%  Similarity=1.045  Sum_probs=34.1

Q ss_pred             CCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       299 ~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      ..|...+|+|.+++||+..|+|||+.||.|||||.+|+
T Consensus         6 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~   43 (44)
T 3a7q_B            6 KECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP   43 (44)
T ss_dssp             --CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred             CCCCCCceEcCCCCEeChhhccCCCCCCCCCccccCCC
Confidence            46888999999999999999999999999999999996

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.17  E-value=1.8e-11  Score=80.12  Aligned_cols=38  Identities=47%  Similarity=1.039  Sum_probs=35.5

Q ss_pred             CCCCCCcEEcCC-CCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQN-FKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       299 ~~C~~~~f~C~~-~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      ..|+..+|+|.+ ++||+..|+|||+.||.|||||.+|.
T Consensus         5 ~~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~   43 (43)
T 2jm4_A            5 VKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG   43 (43)
T ss_dssp             CSCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSCC
T ss_pred             CCCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCCC
Confidence            468889999999 99999999999999999999999985

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.16  E-value=2.6e-11  Score=78.93  Aligned_cols=38  Identities=42%  Similarity=0.981  Sum_probs=34.9

Q ss_pred             CCCCCCcEEcC-CCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       299 ~~C~~~~f~C~-~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      ..|...+|+|. ++.||+..|+|||+.||.|||||.+|+
T Consensus         2 ~~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~   40 (42)
T 1cr8_A            2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCC
Confidence            36788999998 599999999999999999999999996

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.16  E-value=9.5e-12  Score=83.08  Aligned_cols=36  Identities=39%  Similarity=0.918  Sum_probs=33.1

Q ss_pred             CCCCCCccccC-----CCceeCCccccCCCCCCCCCCCCCC
Q psy954          119 ITCDGSKFFCR-----NGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       119 ~~C~~~~f~C~-----~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      .+|.+.+|+|.     +++||+..|+|||++||+|||||.+
T Consensus         5 ~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~   45 (47)
T 1k7b_A            5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   45 (47)
T ss_dssp             -CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCC
Confidence            46999999998     7899999999999999999999975

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.14  E-value=1.2e-11  Score=83.73  Aligned_cols=40  Identities=45%  Similarity=1.037  Sum_probs=36.8

Q ss_pred             CCCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCCC
Q psy954          298 YRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY  337 (337)
Q Consensus       298 ~~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~  337 (337)
                      ...|+..+|+|.+|+||+..|+|||..||.|||||.+|.+
T Consensus         4 p~~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~~~~   43 (52)
T 2m0p_A            4 PASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNS   43 (52)
T ss_dssp             CCSSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHSCCC
T ss_pred             CCCCCCCceECCCCCEEecCccCCCCCCCCCCCccccchh
Confidence            4578889999999999999999999999999999998854

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.14  E-value=2.9e-11  Score=79.76  Aligned_cols=38  Identities=45%  Similarity=0.968  Sum_probs=35.2

Q ss_pred             CCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       299 ~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      ..|...+|+|.+|+||+..|+|||+.||.|||||..|.
T Consensus         4 ~~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c~   41 (45)
T 1d2l_A            4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL   41 (45)
T ss_dssp             CBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTTT
T ss_pred             CcCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCCCc
Confidence            46888999999999999999999999999999999863

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.13  E-value=2.4e-11  Score=77.77  Aligned_cols=36  Identities=42%  Similarity=1.007  Sum_probs=33.6

Q ss_pred             CCCCcEEcCC--CCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          301 CSSEEFACQN--FKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       301 C~~~~f~C~~--~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      |++.+|+|.+  ++|||..|+|||+.||.|||||.+|+
T Consensus         1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~   38 (39)
T 3dpr_E            1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred             CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence            5678999997  89999999999999999999999996

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.10  E-value=2.6e-11  Score=80.97  Aligned_cols=38  Identities=34%  Similarity=0.956  Sum_probs=34.8

Q ss_pred             CCCCCCcEEcC-----CCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQ-----NFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       299 ~~C~~~~f~C~-----~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      ..|...+|+|.     +++|||..|+|||+.||.|||||.+|+
T Consensus         5 ~~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~   47 (47)
T 1k7b_A            5 GSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG   47 (47)
T ss_dssp             -CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGGC
T ss_pred             CCCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCCC
Confidence            46888999998     799999999999999999999999985

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.10  E-value=3.8e-12  Score=111.33  Aligned_cols=62  Identities=32%  Similarity=0.722  Sum_probs=56.2

Q ss_pred             CCCCCCCCccccccCCCCCCCCCCCCcEEe--eCCceecCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCcEEc
Q psy954          237 DPDCVDGADENTTALNCPKQSSCSPDQFSC--GNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCSSEEFAC  308 (337)
Q Consensus       237 ~~dC~dgsDE~~~~~~C~~~~~C~~~~f~C--~~g~Ci~~~~~CDg~~dC~d~sDE~~~C~~~~~~C~~~~f~C  308 (337)
                      ..+|.|++||    ++|.   .|+..+|+|  .+|+|||..|+|||..||.||||| .+|.  ...|.+.+|+|
T Consensus        40 ~~~c~d~sDE----~~C~---~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE-~~C~--~~~C~~~~F~c  103 (215)
T 2gtl_O           40 AGSLRHRVEE----LEDP---SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE-KDCT--LPTKAGDKFIG  103 (215)
T ss_dssp             HHHHHHHHHH----HSCC---SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHH-HCCC--CSSCTTCEEEE
T ss_pred             cccCCcchhh----ccCC---CCCCcceeeCCCCCcCccccccCCCCCcCCCcccc-cCCC--CCCcCCCceee
Confidence            4589999999    7894   599999999  799999999999999999999999 9997  45799999998

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=99.10  E-value=2.8e-11  Score=81.64  Aligned_cols=36  Identities=44%  Similarity=0.997  Sum_probs=33.5

Q ss_pred             CCCCCCccccC-CCceeCCccccCCCCCCCCCCCCCC
Q psy954          119 ITCDGSKFFCR-NGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       119 ~~C~~~~f~C~-~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      ..|.+.+|+|. +|+||+..|+|||+.||.|||||..
T Consensus         5 ~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~   41 (50)
T 2knx_A            5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI   41 (50)
T ss_dssp             CTTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSG
T ss_pred             CCCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCcccc
Confidence            46999999995 8999999999999999999999986

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=99.09  E-value=1.7e-11  Score=82.13  Aligned_cols=35  Identities=46%  Similarity=1.011  Sum_probs=33.3

Q ss_pred             CCCCCccccCCC-ceeCCccccCCCCCCCCCCCCCC
Q psy954          120 TCDGSKFFCRNG-KCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       120 ~C~~~~f~C~~g-~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      +|.+.+|+|.+| +||+..|+|||+.||.|||||.+
T Consensus         6 ~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~   41 (48)
T 2i1p_A            6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAG   41 (48)
T ss_dssp             CCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHS
T ss_pred             CCCCCeeECCCCCEeCCHhhcCCCCCCCCCCccccc
Confidence            588999999999 89999999999999999999976

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=99.07  E-value=5.7e-11  Score=79.29  Aligned_cols=36  Identities=39%  Similarity=0.927  Sum_probs=33.1

Q ss_pred             CCCCCCccccC-----CCceeCCccccCCCCCCCCCCCCCC
Q psy954          119 ITCDGSKFFCR-----NGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       119 ~~C~~~~f~C~-----~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      ..|.+.+|+|.     +++|||..|+|||+.||.|||||.+
T Consensus         3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~   43 (47)
T 1jrf_A            3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   43 (47)
T ss_dssp             CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred             CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc
Confidence            35899999998     6899999999999999999999975

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=99.04  E-value=4.1e-11  Score=80.30  Aligned_cols=38  Identities=45%  Similarity=0.980  Sum_probs=35.5

Q ss_pred             CCCCCCcEEcCCC-CeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQNF-KCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       299 ~~C~~~~f~C~~~-~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      ..|...+|+|.++ +||+..|+|||+.||.|||||.+|+
T Consensus         5 ~~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~   43 (48)
T 2i1p_A            5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP   43 (48)
T ss_dssp             CCCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred             CCCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence            4688899999999 8999999999999999999999986

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=99.01  E-value=6.7e-11  Score=77.75  Aligned_cols=37  Identities=46%  Similarity=1.075  Sum_probs=34.1

Q ss_pred             CCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       299 ~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      ..|+..+|+|.++.||+..|+|||+.||.|||||..|
T Consensus         3 ~~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~   39 (44)
T 1j8e_A            3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             CCCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCCc
Confidence            3688899999999999999999999999999999864

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=99.01  E-value=1.1e-10  Score=78.65  Aligned_cols=37  Identities=35%  Similarity=0.933  Sum_probs=34.1

Q ss_pred             CCCCCCcEEcC-CCCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       299 ~~C~~~~f~C~-~~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      ..|...+|+|. +++||+..|+|||+.||.|||||..|
T Consensus         5 ~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C   42 (50)
T 2knx_A            5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA   42 (50)
T ss_dssp             CTTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGG
T ss_pred             CCCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCccccc
Confidence            46888999995 99999999999999999999999876

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=98.99  E-value=4.7e-11  Score=79.72  Aligned_cols=38  Identities=34%  Similarity=0.948  Sum_probs=34.7

Q ss_pred             CCCCCCcEEcC-----CCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQ-----NFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       299 ~~C~~~~f~C~-----~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      ..|...+|+|.     +++|||..|+|||+.||.|||||.+|+
T Consensus         3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~   45 (47)
T 1jrf_A            3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG   45 (47)
T ss_dssp             CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred             CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence            35888999998     789999999999999999999999875

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=98.70  E-value=3.1e-09  Score=76.68  Aligned_cols=50  Identities=28%  Similarity=0.679  Sum_probs=42.6

Q ss_pred             CCCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccCCCCCCCCccccCC
Q psy954           75 VNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRN  130 (337)
Q Consensus        75 ~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~~~~C~~~~f~C~~  130 (337)
                      .++|+.+||||+|+|+.++.++++|+|+.||.|..|+++|...      ++|.|..
T Consensus         5 ~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~------dec~Cg~   54 (69)
T 1kli_L            5 QLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT------VEYPCGK   54 (69)
T ss_dssp             CCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEEC------SSSCTTC
T ss_pred             cccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCc------ccccCCC
Confidence            3889999999999999998755999999999999999999874      3566654

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.68  E-value=8.5e-09  Score=89.52  Aligned_cols=44  Identities=36%  Similarity=0.951  Sum_probs=37.9

Q ss_pred             CCCCCCccccC--CCceeCCccccCCCCCCCCCCCCCCCccCCc-cc
Q psy954          119 ITCDGSKFFCR--NGKCISRMWSCDGDDDCGDNSDEDPNYCNVQ-IT  162 (337)
Q Consensus       119 ~~C~~~~f~C~--~g~CI~~~~~CDG~~DC~DgsDE~~~~C~~~-~c  162 (337)
                      .+|.+.+|+|.  +|+||+..|+|||++||+|||||.+..|... +|
T Consensus        51 ~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc   97 (220)
T 2gtl_N           51 THCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVK   97 (220)
T ss_dssp             CSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGC
T ss_pred             CCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCcc
Confidence            46999999995  5899999999999999999999986567765 44

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=98.63  E-value=6.3e-09  Score=71.11  Aligned_cols=46  Identities=30%  Similarity=0.783  Sum_probs=39.1

Q ss_pred             CcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccCCCCCCCCccccC
Q psy954           78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR  129 (337)
Q Consensus        78 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~~~~C~~~~f~C~  129 (337)
                      |+.+||+|+|+|+.++.++++|+|+.||.|..|+++|...      +||.|.
T Consensus         2 C~~~nggC~~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~------dec~cg   47 (53)
T 2bz6_L            2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT------VEYPCG   47 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEEC------SSSCTT
T ss_pred             CcCCCCCcCCEeEcCCCCCEEeeCCCCCEECCCCCcccCC------ccccCC
Confidence            6778999999999998756999999999999999999864      455554

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.61  E-value=2.1e-08  Score=87.08  Aligned_cols=58  Identities=24%  Similarity=0.608  Sum_probs=46.7

Q ss_pred             CCCCCCcEEee--CCceecCCCcCCCCCCCCCCCCCC-CCCCCCCC-CCCCCc--EEcCCCCeecC
Q psy954          257 SSCSPDQFSCG--NGRCINTGWLCDHDNDCGDGSDEG-KECHDKYR-TCSSEE--FACQNFKCIRK  316 (337)
Q Consensus       257 ~~C~~~~f~C~--~g~Ci~~~~~CDg~~dC~d~sDE~-~~C~~~~~-~C~~~~--f~C~~~~Ci~~  316 (337)
                      ..|+..+|+|.  +|.|||..|+|||..||+|||||. .+|.  .. +|.+.+  ++|.++.|+..
T Consensus        51 ~~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~--~~~tc~~~qF~g~~~~d~C~kr  114 (220)
T 2gtl_N           51 THCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCD--TSVVKAGNVFSGTSTWHGCLAR  114 (220)
T ss_dssp             CSSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGC--GGGGCTTCEEEEEEEECSSCCC
T ss_pred             CCCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCC--CCCccCCcceeeEecCChhhcC
Confidence            56888999995  689999999999999999999992 3797  33 666555  57778888654

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.60  E-value=9.6e-09  Score=89.83  Aligned_cols=42  Identities=43%  Similarity=0.957  Sum_probs=36.0

Q ss_pred             CCCCCCccccCC--CceeCCccccCCCCCCCCCCCCCCCccCCc
Q psy954          119 ITCDGSKFFCRN--GKCISRMWSCDGDDDCGDNSDEDPNYCNVQ  160 (337)
Q Consensus       119 ~~C~~~~f~C~~--g~CI~~~~~CDG~~DC~DgsDE~~~~C~~~  160 (337)
                      .+|.+.+|+|.+  |+||+..|+|||.+||+|||||.+..|...
T Consensus        52 ~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~~   95 (217)
T 2gtl_M           52 HHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLN   95 (217)
T ss_dssp             CCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCCG
T ss_pred             CCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCCC
Confidence            469999999965  999999999999999999999974346544

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=98.59  E-value=1.3e-08  Score=71.16  Aligned_cols=40  Identities=33%  Similarity=0.809  Sum_probs=35.9

Q ss_pred             CcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        78 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      |+.+||+|+|+|+.++.++++|+|+.||.|..|+++|...
T Consensus         2 C~~~nggC~~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~   41 (59)
T 2wph_E            2 CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPA   41 (59)
T ss_dssp             TTTGGGGCSSEEEECSTTCEEEECCTTEEECTTSSCEEES
T ss_pred             CcCCCCCcCCEeEeCCCCCEEeeCCCCcEECCCCCcccCC
Confidence            6778999999999998655999999999999999999863

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=98.54  E-value=2.1e-08  Score=67.89  Aligned_cols=45  Identities=31%  Similarity=0.846  Sum_probs=38.1

Q ss_pred             CcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccCCCCCCCCccccC
Q psy954           78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCR  129 (337)
Q Consensus        78 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~~~~C~~~~f~C~  129 (337)
                      |+.+||+|+|+|+.++.+ ++|.|+.||.|..|+++|...      ++|.|.
T Consensus         1 C~~~ng~C~~~C~n~~gs-~~C~C~~Gy~L~~d~~tC~di------de~pCg   45 (51)
T 1kig_L            1 CSLDNGGCDQFCREERSE-VRCSCAHGYVLGDDSKSCVST------ERFPCG   45 (51)
T ss_dssp             CCTTTTSSSSCCCEETTE-ECCCCCTTEEECTTSSCEEEC------SSSCTT
T ss_pred             CCCCCCCcCCEeEcCCCC-eEEeCCCCcEECCCCCccccC------CcccCC
Confidence            566789999999998766 999999999999999999864      356664

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.48  E-value=5e-08  Score=85.31  Aligned_cols=64  Identities=27%  Similarity=0.578  Sum_probs=45.9

Q ss_pred             CCCCCCcEEeeC--CceecCCCcCCCCCCCCCCCCCCC--CCCCCCCCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCC
Q psy954          257 SSCSPDQFSCGN--GRCINTGWLCDHDNDCGDGSDEGK--ECHDKYRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDE  332 (337)
Q Consensus       257 ~~C~~~~f~C~~--g~Ci~~~~~CDg~~dC~d~sDE~~--~C~~~~~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE  332 (337)
                      ..|+..+|+|.+  |.|||..|+|||..||.||||| .  +|.... .+...+|.+.           .....|.++++|
T Consensus        52 ~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE-~~~~C~~~~-~~~~~~~~g~-----------~~~~~C~~~~pe  118 (217)
T 2gtl_M           52 HHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE-DPETCSLNI-THVGSSYTGL-----------ATWTSCEDLNPD  118 (217)
T ss_dssp             CCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTT-SHHHHCCGG-GCTTCEEEEE-----------EEESSSCSCCSE
T ss_pred             CCCCCCceecCCCCCcEechhhccCCCCCCCCCCcc-ccCcCCCCc-ccCCcccccc-----------cCcccCCCCCCC
Confidence            578899999964  9999999999999999999999 6  686321 2333355431           233466666665


Q ss_pred             C
Q psy954          333 F  333 (337)
Q Consensus       333 ~  333 (337)
                      .
T Consensus       119 ~  119 (217)
T 2gtl_M          119 H  119 (217)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.27  E-value=1.7e-07  Score=64.38  Aligned_cols=41  Identities=32%  Similarity=0.867  Sum_probs=36.8

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      +.|+..|++|+|+|+.++++ ++|.|+.||.|..|+++|...
T Consensus         2 dEC~~~~~~C~~~C~nt~Gs-y~C~C~~Gy~L~~d~~~C~di   42 (55)
T 2jkh_L            2 KLCSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGKACIPT   42 (55)
T ss_dssp             CCTTTGGGGCSSEEEEETTE-EEEECCTTEEECTTSSCEEES
T ss_pred             ccccCCCCCcCcEeEcCCCC-eEEeCCCCCEECCCCCeeccC
Confidence            56888889999999998876 999999999999999999864

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.18  E-value=1.3e-06  Score=87.09  Aligned_cols=33  Identities=48%  Similarity=1.196  Sum_probs=31.2

Q ss_pred             CCCCCccccC-CCceeCCccccCCCCCCCCCCCCCC
Q psy954          120 TCDGSKFFCR-NGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       120 ~C~~~~f~C~-~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      .|  .+|+|. +|+||+..|+|||.+||+|+|||.+
T Consensus        67 ~c--~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~  100 (537)
T 3ojy_B           67 RC--EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEAN  100 (537)
T ss_dssp             CC--SSEECTTTCCEECGGGTTSSSCCSSSSCTTSS
T ss_pred             CC--CccCcCCCCcEeeccccCCCCCCCCCcccccc
Confidence            47  799999 9999999999999999999999987

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.13  E-value=1.5e-06  Score=87.01  Aligned_cols=64  Identities=33%  Similarity=0.807  Sum_probs=47.5

Q ss_pred             eeecCCCcccCCCCCCCC-CccccccCCCCCC------CCCCCCcEEee-CCceecCCCcCCCCCCCCCCCCCCCCCCC
Q psy954          226 QCIPKKWLCDGDPDCVDG-ADENTTALNCPKQ------SSCSPDQFSCG-NGRCINTGWLCDHDNDCGDGSDEGKECHD  296 (337)
Q Consensus       226 ~Ci~~~~~CDg~~dC~dg-sDE~~~~~~C~~~------~~C~~~~f~C~-~g~Ci~~~~~CDg~~dC~d~sDE~~~C~~  296 (337)
                      |.|.......| ..|... .|+    ..|...      ..|. .+|+|. +|+||+..|+|||..||.|+||| .+|..
T Consensus        31 R~v~~p~q~gG-~~C~~~l~d~----~~C~~~~~c~~~~~c~-~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE-~~C~~  102 (554)
T 3ojy_A           31 RSLLQPNKFGG-TICSGDIWDQ----ASCSSSTTCVRQAQCG-QDFQCKETGRCLKRHLVCNGDQDCLDGSDE-DDCED  102 (554)
T ss_dssp             CCEEECBCSSC-CCCCSCSEEE----EECCCCCCC--CCCCS-SSEECSSSCCEECGGGTTSSSCCSSSCTTS-SSCCS
T ss_pred             EeeccccccCC-CCCCCccccc----cCCCCCCCCcccCCCC-CcCccCCCCEEcccccccCCcccCCCcccc-ccCCC
Confidence            55655555544 457765 555    345432      3453 699999 99999999999999999999999 88974

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.10  E-value=1.8e-06  Score=86.20  Aligned_cols=77  Identities=31%  Similarity=0.636  Sum_probs=51.7

Q ss_pred             eeecCCCcccCCCCCCC-CCccccccCCCCCCCCCCC----CcEEee-CCceecCCCcCCCCCCCCCCCCCCCCCCCCCC
Q psy954          226 QCIPKKWLCDGDPDCVD-GADENTTALNCPKQSSCSP----DQFSCG-NGRCINTGWLCDHDNDCGDGSDEGKECHDKYR  299 (337)
Q Consensus       226 ~Ci~~~~~CDg~~dC~d-gsDE~~~~~~C~~~~~C~~----~~f~C~-~g~Ci~~~~~CDg~~dC~d~sDE~~~C~~~~~  299 (337)
                      |.|...... |-..|.+ ..|+    ..|.....|+.    .+|+|. +|+||+..|+|||..||.|+||| .+|.... 
T Consensus        33 R~v~~p~q~-gG~~C~~~l~d~----~~C~~~~~C~~~~~c~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE-~~c~~~~-  105 (537)
T 3ojy_B           33 AYLLQPSQF-HGEPCNFSDKEV----EDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDE-ANCRRIY-  105 (537)
T ss_dssp             CCEEECEET-TCCCCCSCSEEE----EECCCCCCCCCCSCCSSEECTTTCCEECGGGTTSSSCCSSSSCTT-SSCSSCS-
T ss_pred             eeecccccc-CCCcCccchhhh----ccCCCccccccCCCCCccCcCCCCcEeeccccCCCCCCCCCcccc-ccCCCCC-
Confidence            455544444 3455664 3555    34533233322    799999 99999999999999999999999 8886433 


Q ss_pred             CCCCCcEEcCCCCeec
Q psy954          300 TCSSEEFACQNFKCIR  315 (337)
Q Consensus       300 ~C~~~~f~C~~~~Ci~  315 (337)
                            +.|....+||
T Consensus       106 ------~~C~~~~~~~  115 (537)
T 3ojy_B          106 ------KKCQHEMDQY  115 (537)
T ss_dssp             ------SCCSSCCBCC
T ss_pred             ------CccccCcCCC
Confidence                  3454445555

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.05  E-value=3.2e-06  Score=84.53  Aligned_cols=37  Identities=46%  Similarity=1.112  Sum_probs=33.2

Q ss_pred             CCCCCccccC-CCceeCCccccCCCCCCCCCCCCCCCccCC
Q psy954          120 TCDGSKFFCR-NGKCISRMWSCDGDDDCGDNSDEDPNYCNV  159 (337)
Q Consensus       120 ~C~~~~f~C~-~g~CI~~~~~CDG~~DC~DgsDE~~~~C~~  159 (337)
                      .|. ++|+|. +|+||+..|+|||.+||.|+|||.+  |..
T Consensus        65 ~c~-~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~--C~~  102 (554)
T 3ojy_A           65 QCG-QDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD--CED  102 (554)
T ss_dssp             CCS-SSEECSSSCCEECGGGTTSSSCCSSSCTTSSS--CCS
T ss_pred             CCC-CcCccCCCCEEcccccccCCcccCCCcccccc--CCC
Confidence            474 799999 9999999999999999999999986  553

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.97  E-value=1.3e-05  Score=71.58  Aligned_cols=68  Identities=18%  Similarity=0.230  Sum_probs=54.0

Q ss_pred             ccCCCceEEEEcCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccC
Q psy954            2 RIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD   69 (337)
Q Consensus         2 ~~dG~~R~vl~~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~   69 (337)
                      +++|..+++++..+.+|++|++.+++|||++|..+.|+++++.+|.....+.......|.+|.+....
T Consensus       195 ~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~  262 (267)
T 1npe_A          195 NPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (267)
T ss_dssp             ETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             ecCCCceEEEecCCCCceEEEEeCCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCcc
Confidence            45677777777778999999999999999999999999999988876666654322358999886543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.80  E-value=4.2e-05  Score=71.10  Aligned_cols=65  Identities=20%  Similarity=0.436  Sum_probs=53.6

Q ss_pred             ccCCCceEEEE-cCCCCceEEEEE--CCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeec
Q psy954            2 RIATGASMVLI-SATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYS   67 (337)
Q Consensus         2 ~~dG~~R~vl~-~~~~~Pf~Lav~--~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~   67 (337)
                      .++|+.+++|+ ..+..|.|||+.  ++.|||+|+....|++++. +|..+++++......|.+|.++.
T Consensus       151 ~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~-dG~~~~~~~~~~~~~P~glav~~  218 (318)
T 3sov_A          151 GMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNL-DGTNRQAVVKGSLPHPFALTLFE  218 (318)
T ss_dssp             ETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEEEECSCCSCEEEEEEET
T ss_pred             EcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcC-CCCceEEEecCCCCCceEEEEeC
Confidence            57899999888 678999999998  8999999999999999996 56666666653346799998864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.79  E-value=4.7e-05  Score=73.00  Aligned_cols=66  Identities=20%  Similarity=0.300  Sum_probs=52.2

Q ss_pred             CccCCCceEEEE-cCCCCceEEEEE--CCEEEEEeCCC-CceEEEecccCCceEEEeecccCCCccceeec
Q psy954            1 MRIATGASMVLI-SATIYPFAITVH--RNYIYWTDLQL-RGVYRAEKHTGANMIEMVKRLEDSPRDIHVYS   67 (337)
Q Consensus         1 ~~~dG~~R~vl~-~~~~~Pf~Lav~--~d~IYWtDw~~-~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~   67 (337)
                      ++++|+.+++|+ ..+.+|.+|||.  +++||||||.. .+|++++. +|..+++++......|.+|++-.
T Consensus       186 ~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~-dG~~~~~~~~~~l~~P~glavd~  255 (400)
T 3p5b_L          186 ADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-NGVDIYSLVTENIQWPNGITLDL  255 (400)
T ss_dssp             ECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEET-TSCSCEEEECSSCSCEEEEEEET
T ss_pred             EeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeC-CCCccEEEEECCCCceEEEEEEe
Confidence            367899999988 578999999997  79999999985 78999886 56666666544346788888753

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.79  E-value=5e-05  Score=72.33  Aligned_cols=65  Identities=20%  Similarity=0.265  Sum_probs=52.2

Q ss_pred             CccCCCceEEEE-cCCCCceEEEEE--CCEEEEEeCCC-CceEEEecccCCceEEEeecccCCCccceee
Q psy954            1 MRIATGASMVLI-SATIYPFAITVH--RNYIYWTDLQL-RGVYRAEKHTGANMIEMVKRLEDSPRDIHVY   66 (337)
Q Consensus         1 ~~~dG~~R~vl~-~~~~~Pf~Lav~--~d~IYWtDw~~-~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~   66 (337)
                      ++++|+.+++|+ ..+.+|.+|+|.  +++|||+||.. .+|+|++. +|..+++++......|.+|.+-
T Consensus       186 ~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~-dG~~~~~~~~~~~~~PnGlavd  254 (386)
T 3v65_B          186 ANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM-DGSGRRIIADTHLFWPNGLTID  254 (386)
T ss_dssp             CBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET-TSCSCEEEECSSCSCEEEEEEE
T ss_pred             EeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC-CCCCcEEEEECCCCCeeeEEEe
Confidence            467899998888 577999999998  89999999998 89999987 4556666654433678888875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.76  E-value=3.4e-05  Score=72.54  Aligned_cols=64  Identities=20%  Similarity=0.273  Sum_probs=51.5

Q ss_pred             ccCCCceEEEE-cCCCCceEEEEE--CCEEEEEeCCC-CceEEEecccCCceEEEeecccCCCccceee
Q psy954            2 RIATGASMVLI-SATIYPFAITVH--RNYIYWTDLQL-RGVYRAEKHTGANMIEMVKRLEDSPRDIHVY   66 (337)
Q Consensus         2 ~~dG~~R~vl~-~~~~~Pf~Lav~--~d~IYWtDw~~-~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~   66 (337)
                      +++|+.+++|+ ..+.+|.+|||.  +++||||||.. .+|+|++. +|..+++++......|.+|.+-
T Consensus       144 ~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~-dG~~~~~~~~~~~~~PnGla~d  211 (349)
T 3v64_C          144 NLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM-DGSGRRIIADTHLFWPNGLTID  211 (349)
T ss_dssp             ETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET-TSCSCEESCCSSCSCEEEEEEE
T ss_pred             cCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC-CCCCcEEEEECCCCCcceEEEe
Confidence            57899998888 578999999998  89999999998 99999987 4556665554333678888875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.53  E-value=0.0002  Score=66.10  Aligned_cols=64  Identities=20%  Similarity=0.324  Sum_probs=50.8

Q ss_pred             ccCCCceEEEE-cCCCCceEEEEE--CCEEEEEeCCC-CceEEEecccCCceEEEeecccCCCccceee
Q psy954            2 RIATGASMVLI-SATIYPFAITVH--RNYIYWTDLQL-RGVYRAEKHTGANMIEMVKRLEDSPRDIHVY   66 (337)
Q Consensus         2 ~~dG~~R~vl~-~~~~~Pf~Lav~--~d~IYWtDw~~-~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~   66 (337)
                      +++|+.+++|+ ..+.+|.+|+|.  +++|||+||.. .+|++++. +|+.++++.......|.+|.+-
T Consensus       105 ~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~-dG~~~~~~~~~~~~~P~gla~d  172 (316)
T 1ijq_A          105 DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGL-NGVDIYSLVTENIQWPNGITLD  172 (316)
T ss_dssp             ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEET-TSCCEEEEECSSCSCEEEEEEE
T ss_pred             eCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcC-CCCCeEEEEECCCCCceEEEEe
Confidence            57888888887 477999999997  89999999986 79999886 5666666654333678888875

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=97.40  E-value=5.6e-05  Score=59.57  Aligned_cols=55  Identities=27%  Similarity=0.554  Sum_probs=41.6

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccCCCCCCCCccccCC-CceeCCc
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRN-GKCISRM  137 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~~~~C~~~~f~C~~-g~CI~~~  137 (337)
                      ++|..+|++|.+.|+.+.++ ++|.|+.||.|..++++|...      .+|.|.+ +.||+..
T Consensus        55 ~~C~~~~~~C~~~C~n~~g~-y~C~C~~G~~~~~~g~~C~~~------~~~pC~~~~~~i~~~  110 (114)
T 1aut_L           55 LNCSLDNGGCTHYCLEEVGW-RRCSCAPGYKLGDDLLQCHPA------VKFPCGRPWKRMEKK  110 (114)
T ss_dssp             SSSSSGGGGCSSEEEECSSS-EEEECCTTEEECTTSSCEEEC------SSSCTTCCC------
T ss_pred             CcCcCCCCCCCCEeECCCCC-EEeECCCCeeECCCCCccCcC------cccCCCCCCccCCCC
Confidence            57888789999999998776 999999999999999999863      4578876 4788754

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.31  E-value=7.9e-05  Score=50.13  Aligned_cols=34  Identities=26%  Similarity=0.578  Sum_probs=29.5

Q ss_pred             CCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           82 NGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        82 nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      ++.|.|+|+.++++ |+|.|+.||.|..++++|.+
T Consensus        19 ~~~C~~~C~n~~Gs-y~C~C~~Gy~~~~d~~~C~~   52 (53)
T 1apq_A           19 QPQCQHLCHNYVGG-YFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SCTTSSEEEEETTE-EEEECSTTCEECTTSSCEEC
T ss_pred             CCCCCCEeECCCCC-eEEECCCCCeECCCCCccCC
Confidence            35688999988776 99999999999999998864

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=97.27  E-value=0.00014  Score=66.26  Aligned_cols=41  Identities=29%  Similarity=0.808  Sum_probs=37.3

Q ss_pred             CCCcCC-CCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           76 NPCNIH-NGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        76 npC~~~-nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      |.|..+ ||+|+|+|..+.++ ++|.|+.||.|..++++|.+.
T Consensus         3 ~eC~~~~~~~C~~~C~~~~~~-~~C~C~~G~~l~~d~~sC~p~   44 (283)
T 3f1s_B            3 NECHPERTDGCQHFCLPGQES-YTCSCAQGYRLGEDHKQCVPH   44 (283)
T ss_dssp             CCCCSSCSSSCSSBCCCCTTS-CCCBCCTTEEECTTSSCEEEC
T ss_pred             CccCCCCCCCCCCEeeCCCCC-eEecCCCCcccCCCCCccccc
Confidence            789988 89999999988766 999999999999999999873

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.23  E-value=0.00018  Score=76.17  Aligned_cols=33  Identities=45%  Similarity=1.137  Sum_probs=31.7

Q ss_pred             CcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          304 EEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       304 ~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      ..|+|.+|+||+..|+|||..||+|+|||.+|+
T Consensus       121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~C~  153 (913)
T 3t5o_A          121 NKFRCDSGRCIARKLECNGENDCGDNSDERDCG  153 (913)
T ss_dssp             SEEECTTSCEEEGGGSSSSSCCSSSSGGGTTCS
T ss_pred             cccccCCCceEccceecCCcccCCCccccccCC
Confidence            679999999999999999999999999999985

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.14  E-value=0.0003  Score=74.53  Aligned_cols=40  Identities=43%  Similarity=1.061  Sum_probs=35.5

Q ss_pred             CcEEeeCCceecCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy954          262 DQFSCGNGRCINTGWLCDHDNDCGDGSDEGKECHDKYRTCS  302 (337)
Q Consensus       262 ~~f~C~~g~Ci~~~~~CDg~~dC~d~sDE~~~C~~~~~~C~  302 (337)
                      ..|+|.+|+||+..|+|||..||+|+||| .+|......|.
T Consensus       121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde-~~C~~~~~~C~  160 (913)
T 3t5o_A          121 NKFRCDSGRCIARKLECNGENDCGDNSDE-RDCGRTKAVCT  160 (913)
T ss_dssp             SEEECTTSCEEEGGGSSSSSCCSSSSGGG-TTCSSCCCSSS
T ss_pred             cccccCCCceEccceecCCcccCCCcccc-ccCCCCCCccc
Confidence            67999999999999999999999999999 89975545564

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.57  E-value=0.0055  Score=54.21  Aligned_cols=64  Identities=19%  Similarity=0.314  Sum_probs=46.2

Q ss_pred             ccCCCceEEEE-cCCCCceEEEEE--CCEEEEEeCC--CCceEEEecccCCceEEEeecccCCCccceee
Q psy954            2 RIATGASMVLI-SATIYPFAITVH--RNYIYWTDLQ--LRGVYRAEKHTGANMIEMVKRLEDSPRDIHVY   66 (337)
Q Consensus         2 ~~dG~~R~vl~-~~~~~Pf~Lav~--~d~IYWtDw~--~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~   66 (337)
                      +++|+.+++++ ..+..|.+|++.  +++|||+|+.  ...|++++. +|...+++.......|.+|.+-
T Consensus       107 ~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~-dg~~~~~~~~~~~~~P~gia~d  175 (267)
T 1npe_A          107 KMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM-DGTNRRILAQDNLGLPNGLTFD  175 (267)
T ss_dssp             ETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET-TSCCCEEEECTTCSCEEEEEEE
T ss_pred             EcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEec-CCCCcEEEEECCCCCCcEEEEc
Confidence            46787777777 456899999998  6899999998  578988876 4555555543222457777664

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=96.54  E-value=0.00082  Score=52.25  Aligned_cols=43  Identities=35%  Similarity=0.688  Sum_probs=35.8

Q ss_pred             ccCCCCCcCCCCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      .+..+||...|++|++.|+..+.+ ++|.||.||.+. ++++|..
T Consensus        26 ~Cd~neC~~~~~~C~~~C~n~~g~-y~C~C~~Gy~g~-~g~~C~d   68 (107)
T 2w2n_E           26 AMGTNECLDNNGGCSYVCNDLKIG-YECLCPDGFQLV-AQRRCED   68 (107)
T ss_dssp             CBSCCGGGTGGGGCSSEEECCSBS-CEEECCTTCEEE-TTTEEEC
T ss_pred             CCcCccCcCCCCCCCCEeEeCCCC-eEEECCCCcccc-CCCcccc
Confidence            456699998889999999998776 999999999985 5667763

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=96.30  E-value=0.0018  Score=52.80  Aligned_cols=40  Identities=33%  Similarity=0.801  Sum_probs=33.8

Q ss_pred             CcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        78 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      |...||+|+|.|+..+.++++|.|+.||.|..+|++|...
T Consensus        91 c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~l~~dG~~C~~~  130 (142)
T 2c4f_L           91 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT  130 (142)
T ss_dssp             TTTGGGGCSSEEECCTTSCCEEECCTTEEECTTSSCEEES
T ss_pred             ccCCCCCccCEeECCCCCCEEEECCCCceECCCCCCCCCC
Confidence            4445889999999987724999999999999999999864

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=96.02  E-value=0.0035  Score=51.44  Aligned_cols=41  Identities=29%  Similarity=0.705  Sum_probs=31.2

Q ss_pred             CCCcCCCCCccccc-cCCCCCcCeecCCCCcccccCCcccccC
Q psy954           76 NPCNIHNGGCAQSC-HPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        76 npC~~~nggCs~lC-l~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      ++|...+++|.+.| +..+++ ++|.||.||.|..+|++|...
T Consensus        86 deC~~~~~~C~~~C~~n~~g~-y~C~C~~Gy~l~~dG~~C~~~  127 (146)
T 1x7a_L           86 ATCNIKNGRCKQFCKTGADSK-VLCSCTTGYRLAPDQKSCKPA  127 (146)
T ss_dssp             CCTTSGGGSCSSBCCCCSSSC-CCCBCCTTEEECTTSSSEEEC
T ss_pred             ccccCCCCCCcCCCCCCCCCC-EEeEcCCCcEeCCCCCcCCCC
Confidence            67777677888888 655544 888888888888888888753

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=95.48  E-value=0.0033  Score=50.73  Aligned_cols=41  Identities=32%  Similarity=0.867  Sum_probs=34.2

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      ++|...+++|.+.|+..+++ ++|.|+.||.|..+|++|...
T Consensus        82 d~C~~~~~~C~~~C~~~~g~-y~C~C~~Gy~l~~~g~~C~~~  122 (134)
T 2vh0_B           82 KLCSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGKACIPT  122 (134)
T ss_dssp             CGGGTGGGGCSSEEEEETTE-EEEECCTTEEECTTSSCEEES
T ss_pred             CccccCCCCCCCEeECCCCC-EEEECCCCcEECCCCCccCcC
Confidence            66877677898899887655 999999999999999999763

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.28  E-value=0.0054  Score=51.32  Aligned_cols=40  Identities=28%  Similarity=0.704  Sum_probs=34.9

Q ss_pred             CCCcCCCCC---ccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           76 NPCNIHNGG---CAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        76 npC~~~ngg---Cs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      +.|...+++   |+|.|+..+++ ++|.|+.||+|..++++|..
T Consensus       125 ~eC~~~~~~~~~C~~~C~n~~g~-~~C~C~~Gy~l~~d~~~C~~  167 (170)
T 1szb_A          125 DECQVAPGEAPTCDHHCHNHLGG-FYCSCRAGYVLHRNKRTCSE  167 (170)
T ss_dssp             CTTCCCTTSCCSSSSEEEEETTE-EEEECCTTEEECTTSSCEEE
T ss_pred             CcccCCCCCCCccCCccccCCCC-EEEeCCCCcEECCCCCcccc
Confidence            678877765   99999988776 99999999999999999975

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=95.27  E-value=0.0042  Score=53.52  Aligned_cols=49  Identities=29%  Similarity=0.803  Sum_probs=37.7

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccCCCCCCCCccccCCC
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNG  131 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~~~~C~~~~f~C~~g  131 (337)
                      ++|...+++|.+.|+..+++ ++|.|+.||.|..+|++|...      ..|.|.+.
T Consensus        82 deC~~~~~~C~~~C~n~~gs-y~C~C~~Gy~l~~dG~~C~~~------~~~PC~~~  130 (195)
T 1nfu_B           82 KLCSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGKACIPT------GPYPCGKQ  130 (195)
T ss_dssp             CGGGTGGGGCSSEEEEETTE-EEEECCTTEEECTTSSCEEES------SSSCTTCC
T ss_pred             ccccCCCCCCCCEeECCCCC-eEEECCCCceeCCCCCccccC------CCCCCCCC
Confidence            56877677888899887655 999999999999899888764      24566543

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=95.15  E-value=0.0043  Score=45.91  Aligned_cols=58  Identities=29%  Similarity=0.713  Sum_probs=36.1

Q ss_pred             CCCcCCCCCccc-cccCCCCCcCeecCCCCcccc-cCCcccccCCCCCCCCccccCCCceeC
Q psy954           76 NPCNIHNGGCAQ-SCHPGPNGTAECKCDESTKLV-NEGRMCVAKNITCDGSKFFCRNGKCIS  135 (337)
Q Consensus        76 npC~~~nggCs~-lCl~~~~~~~~C~Cp~g~~L~-~~~~~C~~~~~~C~~~~f~C~~g~CI~  135 (337)
                      ++|+.+++.|.+ .|+.++.+ ++|.|+.||.+. .+++.|...+ .|......|.++.|+.
T Consensus         4 deC~~~~~~C~~g~C~n~~g~-y~C~C~~Gy~~~~~~g~~C~did-eC~~~~~~C~~~~C~n   63 (86)
T 1lmj_A            4 DECRISPDLCGRGQCVNTPGD-FECKCDEGYESGFMMMKNCMDID-ECQRDPLLCRGGVCHN   63 (86)
T ss_dssp             CTTTTCSSTTTTSCEEEETTE-EEECCCSSEEECTTTSSSEEECC-HHHHCSSTTTTSEEEE
T ss_pred             ccccCCCCCCCCCEEECCCCC-EEeeCCCCcCccCCCCCccCCcc-cccCCCCcCCCCEeEc
Confidence            344443334543 68877766 999999999875 3577786431 2544444565567764

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=95.04  E-value=0.017  Score=42.20  Aligned_cols=44  Identities=27%  Similarity=0.588  Sum_probs=29.9

Q ss_pred             cccCCCCCcCeecCCCCcccccCCcccccCCCCCCCCccccCCCceeCC
Q psy954           88 SCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRNGKCISR  136 (337)
Q Consensus        88 lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~~~~C~~~~f~C~~g~CI~~  136 (337)
                      .|+.++.+ ++|.||.||.|  +++.|...+ .|.. .-.|.++.|+..
T Consensus        18 ~C~n~~g~-y~C~C~~Gy~~--~g~~C~did-eC~~-~~~C~~~~C~n~   61 (82)
T 1emn_A           18 QCINTDGS-YRCECPFGYIL--AGNECVDTD-ECSV-GNPCGNGTCKNV   61 (82)
T ss_dssp             EECCCSSC-CCEECCTTEEE--ETTEEEECC-GGGT-CCTTSSSCEEEC
T ss_pred             EEEecCCC-EEEECCCCeEC--CCCccCCcc-cccC-CCCCCCCEeECC
Confidence            67777666 99999999988  567786432 3542 235666677653

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=94.46  E-value=0.0068  Score=44.82  Aligned_cols=39  Identities=21%  Similarity=0.530  Sum_probs=28.8

Q ss_pred             CCCcCCCCCcc-ccccCCCCCcCeecCCCCcccccCCcccc
Q psy954           76 NPCNIHNGGCA-QSCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        76 npC~~~nggCs-~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      +.|...++.|. +.|+.++.+ ++|.||.||.|..++++|+
T Consensus        47 deC~~~~~~C~~~~C~n~~g~-y~C~C~~G~~~~~~~~~Ci   86 (86)
T 1lmj_A           47 DECQRDPLLCRGGVCHNTEGS-YRCECPPGHQLSPNISACI   86 (86)
T ss_dssp             CHHHHCSSTTTTSEEEEETTE-EEEESCTTSCCCSSSCCCC
T ss_pred             ccccCCCCcCCCCEeEcCCCC-EEEECcCCcccCCCCCccC
Confidence            44544444454 478887665 9999999999999998874

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=94.30  E-value=0.024  Score=41.92  Aligned_cols=40  Identities=23%  Similarity=0.624  Sum_probs=29.1

Q ss_pred             CCCcCCCCCc-cccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           76 NPCNIHNGGC-AQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        76 npC~~~nggC-s~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      ++|+.+++.| .+.|+..+.+ ++|.|+.||.|..++++|..
T Consensus         4 deC~~~~~~C~~~~C~n~~g~-y~C~C~~G~~~~~~g~~C~d   44 (87)
T 1z6c_A            4 DECSLKPSICGTAVCKNIPGD-FECECPEGYRYNLKSKSCED   44 (87)
T ss_dssp             CSSSSSSSSBTTSSCCCBTTB-CCCSSSTTCEEETTTTEEEC
T ss_pred             ccccCCCCCCCCCEeECCCCC-EEEECCCCceECCCCCcCCC
Confidence            4455444445 3578877765 99999999999888888863

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.22  E-value=0.065  Score=49.06  Aligned_cols=49  Identities=12%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             CccCCCceEEEEcCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEE
Q psy954            1 MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEM   52 (337)
Q Consensus         1 ~~~dG~~R~vl~~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l   52 (337)
                      |++||++++.|.....-||  ...+++||||+.....|++++... ..+++|
T Consensus       134 ~~~dGs~~~~lt~~~~~~~--~~~g~~iy~t~~g~~~Iy~~~l~g-~~~~~l  182 (302)
T 3s25_A          134 IRIDGEEKKKIKNHYLFTC--NTSDRYFYYNNPKNGQLYRYDTAS-QSEALF  182 (302)
T ss_dssp             EETTSCCCEEEESSCCCCS--EEETTEEEEECTTTCCEEEEETTT-TEEEEE
T ss_pred             EECCCCCeEEEeCCCceEe--eEECCEEEEEeCCCceEEEEECCC-CCEEEE
Confidence            6789999988884433344  678999999998888899888644 444444

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=93.77  E-value=0.012  Score=47.93  Aligned_cols=39  Identities=26%  Similarity=0.745  Sum_probs=30.4

Q ss_pred             CCCcCCCCCccc-cccCCCCCcCeecCCCCcccccCCcccc
Q psy954           76 NPCNIHNGGCAQ-SCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        76 npC~~~nggCs~-lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      +.|..+++.|.+ .|+.++++ |+|.||.||.+..++++|+
T Consensus       108 deC~~~~~~C~~g~C~n~~g~-y~C~C~~Gy~g~~~~~~C~  147 (147)
T 2w86_A          108 DECEVFPGVCKNGLCVNTRGS-FKCQCPSGMTLDATGRICL  147 (147)
T ss_dssp             CHHHHSTTCSSSSEEEEETTE-EEEECCTTCCBCTTSSCBC
T ss_pred             ccccCCCCCCCCCEEECCCCC-EEeeCCCCCccCCCCCeeC
Confidence            555554555654 78887665 9999999999999999884

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=93.63  E-value=0.023  Score=46.65  Aligned_cols=40  Identities=23%  Similarity=0.448  Sum_probs=32.7

Q ss_pred             CCCcCC-CCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           76 NPCNIH-NGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        76 npC~~~-nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      +.|... ++.|+|.|+..+++ ++|.|+.||.|..++++|..
T Consensus       118 ~eC~~~~~~~C~~~C~n~~g~-~~C~C~~Gy~l~~~~~~C~~  158 (159)
T 1nzi_A          118 NECTDFVDVPCSHFCNNFIGG-YFCSCPPEYFLHDDMKNCGV  158 (159)
T ss_dssp             CTTTC-CCCCSSSEEEEETTE-EEEECCTTCEECTTSSCEEC
T ss_pred             cccCCCCCCCCCCcccCcCCC-EEEecCCCcEECCCCCcccc
Confidence            677764 46799999887666 99999999999999998863

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.49  E-value=0.11  Score=47.59  Aligned_cols=52  Identities=19%  Similarity=0.289  Sum_probs=38.7

Q ss_pred             CccCCCceEEEEcCCCCceEEEEECCEEEEEe---CCCCceEEEecccCCceEEEeec
Q psy954            1 MRIATGASMVLISATIYPFAITVHRNYIYWTD---LQLRGVYRAEKHTGANMIEMVKR   55 (337)
Q Consensus         1 ~~~dG~~R~vl~~~~~~Pf~Lav~~d~IYWtD---w~~~~I~r~~k~~G~~~~~l~~~   55 (337)
                      |+++|+.+++|......  .+++.+++|||++   -....|++++.. |+..+.|...
T Consensus        93 i~~dg~~~~~l~~~~~~--~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~  147 (302)
T 3s25_A           93 IKRNGHGSTVLDPDPCI--YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNH  147 (302)
T ss_dssp             EETTSCCCEEEECSCEE--EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEESS
T ss_pred             EeCCCCcceEeecCCcc--EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeCC
Confidence            57899998888765543  6778999999999   456689998874 6566666544

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=93.13  E-value=0.018  Score=47.69  Aligned_cols=39  Identities=23%  Similarity=0.558  Sum_probs=29.9

Q ss_pred             CCCcCCCCCccc-cccCCCCCcCeecCCCCcccccCCcccc
Q psy954           76 NPCNIHNGGCAQ-SCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        76 npC~~~nggCs~-lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      +.|+.+++.|.+ .|+.++.+ |+|.||.||++..++++|+
T Consensus       123 deC~~~~~~C~~g~C~n~~gs-y~C~C~~Gy~g~~d~~~C~  162 (162)
T 1uzk_A          123 DECQELPGLCQGGKCINTFGS-FQCRCPTGYYLNEDTRVCD  162 (162)
T ss_dssp             CHHHHCGGGGBTSEEEECSSC-EEEECCTTCCBCTTTCBBC
T ss_pred             ccccCCCCCcCCCEeEcCCCC-EEeeCCCCccCCCCCCccC
Confidence            455544445653 78888766 9999999999999999884

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=93.04  E-value=0.017  Score=44.60  Aligned_cols=37  Identities=27%  Similarity=0.672  Sum_probs=0.0

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCCCCcccccCCccc
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMC  114 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C  114 (337)
                      ++|.. .+.|.+.|+.++++ ++|.||.||.+..++++|
T Consensus        70 deC~~-~~~C~~~C~n~~gs-y~C~C~~Gy~~~~d~~~C  106 (107)
T 2w2n_E           70 DECQD-PDTCSQLCVNLEGG-YKCQCEEGFQLDPHTKAC  106 (107)
T ss_dssp             ---------------------------------------
T ss_pred             cccCC-CCCcCCeeecCCCC-EEEECCCCceECCCCCcc
Confidence            67763 35688899988766 999999999999998877

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=89.82  E-value=0.4  Score=45.79  Aligned_cols=52  Identities=12%  Similarity=0.045  Sum_probs=36.1

Q ss_pred             CCCCceEEEEE--CCEEEEEeCCCCceEEEecccCCceEEEeecccCCCcccee
Q psy954           14 ATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHV   65 (337)
Q Consensus        14 ~~~~Pf~Lav~--~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v   65 (337)
                      .+.||.+|++.  +++|||+||....|++++..++....+........|.+|.+
T Consensus       224 ~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~  277 (430)
T 3tc9_A          224 KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQF  277 (430)
T ss_dssp             ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEE
T ss_pred             cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEE
Confidence            45799999998  58999999999999999986553322222221134666655

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=89.67  E-value=0.2  Score=33.76  Aligned_cols=37  Identities=30%  Similarity=0.587  Sum_probs=22.8

Q ss_pred             ccCCCCCcCCCCC-ccccc-cCCCCCcCeecCCCCcccccCCcccc
Q psy954           72 KCSVNPCNIHNGG-CAQSC-HPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        72 ~~~~npC~~~ngg-Cs~lC-l~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      .+..+||+  ||| |..+= +... +.++|.||.||.    |+.|.
T Consensus        10 eC~s~pC~--NgGtC~~~~~~d~~-~~y~C~C~~g~~----G~~CE   48 (55)
T 3u7u_G           10 EKEKTFCV--NGGECFMVKDLSNP-SRYLCKCPNEFT----GDRCQ   48 (55)
T ss_dssp             STTTTTSC--TTCEEEEECCC--C-CCEEEEECTTEE----STTSC
T ss_pred             CCcCCCCC--CCCCcCCCCccCCC-CCEeEeCCCCCc----CCCcC
Confidence            45678998  665 42211 2223 349999999986    55664

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=88.61  E-value=0.29  Score=44.70  Aligned_cols=41  Identities=29%  Similarity=0.808  Sum_probs=31.8

Q ss_pred             CCCcCC-CCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           76 NPCNIH-NGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        76 npC~~~-nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      +.|... ++.|.+.|+...++ ++|.|+.||.+..++++|.+.
T Consensus        44 ~eC~~~~~~~C~~~C~~~~g~-~~C~C~~g~~~~~~~~~C~~~   85 (317)
T 3h5c_B           44 NECHPERTDGCQHFCLPGQES-YTCSCAQGYRLGEDHKQCVPH   85 (317)
T ss_dssp             SSCCTTCTTSCSSEEECCSSS-CEEECCTTEECCTTSSCCEEC
T ss_pred             ccCCCCCCCCCcCccccCCCe-eEEeccccccccccccccccc
Confidence            566642 35788889887766 999999999998888888763

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=88.09  E-value=0.38  Score=48.56  Aligned_cols=60  Identities=20%  Similarity=0.494  Sum_probs=42.9

Q ss_pred             CCCcCCCCCccc-----cccCCCCCcCeec-CCCCccccc-----------CCcccccCCCCCCCCccccCC-CceeCCc
Q psy954           76 NPCNIHNGGCAQ-----SCHPGPNGTAECK-CDESTKLVN-----------EGRMCVAKNITCDGSKFFCRN-GKCISRM  137 (337)
Q Consensus        76 npC~~~nggCs~-----lCl~~~~~~~~C~-Cp~g~~L~~-----------~~~~C~~~~~~C~~~~f~C~~-g~CI~~~  137 (337)
                      ++|+.++++|.+     .|+.++.+ ++|. ||.||....           ++++|... ..|......|.+ +.|+...
T Consensus        45 DEC~~~p~~C~~gg~~~~CvNt~gs-Y~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~di-deC~~~~~pC~~~~~Cvnt~  122 (634)
T 1yo8_A           45 DECALVPDICFSTSKVPRCVNTQPG-FHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPE-NPCKDKTHNCHKHAECIYLG  122 (634)
T ss_dssp             CTTTTSCCCSCCCSSSCCEEECSSS-EEECCCCTTEEECCCEESSSHHHHSCCCCEEEC-CTTTTTCCCCCTTEEEEECC
T ss_pred             ccccCCCCcccCCccccceeeccCc-eecccCCCCcccCccccccccccccCCCccccc-ccccCCCcccccCccccccc
Confidence            677766667765     79888776 9999 999997543           56677653 247766678875 4788643

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=88.08  E-value=0.33  Score=35.54  Aligned_cols=38  Identities=34%  Similarity=0.749  Sum_probs=28.6

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCC--CCcccccCCccccc
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCD--ESTKLVNEGRMCVA  116 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp--~g~~L~~~~~~C~~  116 (337)
                      +.|..  +.|.+.|+.++++ ++|.||  .||.|..++++|..
T Consensus        46 deC~~--~~C~~~C~n~~g~-y~C~C~g~~G~~~~~~~~~C~d   85 (87)
T 1z6c_A           46 DECSE--NMCAQLCVNYPGG-YTCYCDGKKGFKLAQDQKSCEV   85 (87)
T ss_dssp             CHHHH--SCCSSEECCCSSS-CCEECCSSSCCBCCTTSSSCBC
T ss_pred             CeeCC--CCCCCEEEccCCC-EEEECCCCcCCcccCCCCcceE
Confidence            44542  3466789988776 999995  88888888888865

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=87.17  E-value=0.22  Score=30.54  Aligned_cols=28  Identities=46%  Similarity=0.935  Sum_probs=19.3

Q ss_pred             cCCCCCcCCCCCccccccCCCCCcCeecCCCCcc
Q psy954           73 CSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTK  106 (337)
Q Consensus        73 ~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~  106 (337)
                      +..+||.  ||+   .|+....+ ++|.||.||.
T Consensus         6 C~~~pC~--ngg---~C~~~~~~-~~C~C~~G~~   33 (39)
T 1edm_B            6 CESNPCL--NGG---SCKDDINS-YECWCPFGFE   33 (39)
T ss_dssp             TTTCCCC--TTC---EEEEETTE-EEEECCTTCC
T ss_pred             CCCCCCC--CCC---EeEcCCCc-eEeECCCCCc
Confidence            4557887  444   45555444 9999999985

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=86.96  E-value=1.8  Score=41.20  Aligned_cols=63  Identities=11%  Similarity=0.029  Sum_probs=38.6

Q ss_pred             ccCCCceEEEEcCCCCceEEEEE--CCEEEEEeCCCC----ceEEEecccCCceEEEeecccCCCcccee
Q psy954            2 RIATGASMVLISATIYPFAITVH--RNYIYWTDLQLR----GVYRAEKHTGANMIEMVKRLEDSPRDIHV   65 (337)
Q Consensus         2 ~~dG~~R~vl~~~~~~Pf~Lav~--~d~IYWtDw~~~----~I~r~~k~~G~~~~~l~~~~~~~p~gI~v   65 (337)
                      ++++...++|.....+|.+|++.  +++|||+|+..+    .|+++.+..+......+..+ ..|.+|.+
T Consensus       165 d~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~-~~p~giav  233 (430)
T 3tc9_A          165 DFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKG-QNCNGAET  233 (430)
T ss_dssp             ETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEEC-SSCCCEEE
T ss_pred             ECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccC-CCceEEEE
Confidence            34555555666777899999998  568999998543    45556654332211222222 45666665

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=86.90  E-value=0.22  Score=39.92  Aligned_cols=30  Identities=13%  Similarity=0.177  Sum_probs=25.2

Q ss_pred             ccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           87 QSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        87 ~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      ..|+.++.+ ++|.|+.||++..+++.|.+.
T Consensus       110 ~~C~n~~g~-y~C~C~~Gy~g~~~~~~C~~~  139 (143)
T 2bou_A          110 TVCFNTVGS-YSCRCRPGWKPRHGIPNNQKD  139 (143)
T ss_dssp             SEEEECSSC-EEEECCSSSCBCTTCCSSBTT
T ss_pred             CEEECCCCC-EEeeCCCCcccCCCCccCccC
Confidence            578877665 999999999999998888764

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=86.26  E-value=0.23  Score=38.65  Aligned_cols=30  Identities=33%  Similarity=0.767  Sum_probs=17.7

Q ss_pred             CccccccCCCCCcCeecCCCCcccccC-Cccc
Q psy954           84 GCAQSCHPGPNGTAECKCDESTKLVNE-GRMC  114 (337)
Q Consensus        84 gCs~lCl~~~~~~~~C~Cp~g~~L~~~-~~~C  114 (337)
                      .|.+.|+..+++ ++|.|+.||++..+ +++|
T Consensus        88 ~C~~~C~n~~g~-y~C~C~~G~~g~~~~g~~C  118 (118)
T 1dx5_I           88 FCSGVCHNLPGT-FECICGPDSALAGQIGTDC  118 (118)
T ss_dssp             SCSSEEEECSSS-EEEEECSSSSCEEEESCCC
T ss_pred             CCcCeEEeCCCC-EEEECCCCCccCCCCCCCC
Confidence            345566665544 67777777766655 5443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=86.23  E-value=1.4  Score=41.66  Aligned_cols=33  Identities=18%  Similarity=0.133  Sum_probs=28.1

Q ss_pred             CCCceEEEEE-CCEEEEEeC-CCCceEEEecccCC
Q psy954           15 TIYPFAITVH-RNYIYWTDL-QLRGVYRAEKHTGA   47 (337)
Q Consensus        15 ~~~Pf~Lav~-~d~IYWtDw-~~~~I~r~~k~~G~   47 (337)
                      +.+|.+|++. .+.||++|+ ....|.+++..+|.
T Consensus       322 ~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          322 FAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             CSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred             eCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence            5789999998 456999999 99999999966664

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=85.54  E-value=0.41  Score=34.59  Aligned_cols=25  Identities=28%  Similarity=0.595  Sum_probs=20.3

Q ss_pred             cccCCCCCcCeecCCCCcccccCCccc
Q psy954           88 SCHPGPNGTAECKCDESTKLVNEGRMC  114 (337)
Q Consensus        88 lCl~~~~~~~~C~Cp~g~~L~~~~~~C  114 (337)
                      .|+..+.+ ++|.|+.||.+..+ ++|
T Consensus        57 ~C~n~~g~-y~C~C~~G~~g~~~-~~C   81 (82)
T 1emn_A           57 TCKNVIGG-FECTCEEGFEPGPM-MTC   81 (82)
T ss_dssp             CEEECSSS-EEECCSSSSCCCSS-SCC
T ss_pred             EeECCCCC-EEeECCCCeEeCCC-Ccc
Confidence            67777665 99999999998877 666

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=85.52  E-value=0.91  Score=38.99  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=27.4

Q ss_pred             cCCCCceEEEEECC-EEEEEeCCCCceEEEeccc
Q psy954           13 SATIYPFAITVHRN-YIYWTDLQLRGVYRAEKHT   45 (337)
Q Consensus        13 ~~~~~Pf~Lav~~d-~IYWtDw~~~~I~r~~k~~   45 (337)
                      ..+..|.+|++..+ +||++++..+.|.+++..+
T Consensus       189 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          189 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC
T ss_pred             cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC
Confidence            34578999999854 9999999999999988744

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=84.74  E-value=0.55  Score=33.18  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=23.6

Q ss_pred             CCCcCCCCCcc--ccccCCCCCcCeec-CCCCcccccCCccc
Q psy954           76 NPCNIHNGGCA--QSCHPGPNGTAECK-CDESTKLVNEGRMC  114 (337)
Q Consensus        76 npC~~~nggCs--~lCl~~~~~~~~C~-Cp~g~~L~~~~~~C  114 (337)
                      +.|......|.  ..|+.++.+ |+|. ++.||.+..++..+
T Consensus         4 dEC~~~~~~C~~~~~C~Nt~Gs-y~C~~~~~g~~~~~~~~~~   44 (71)
T 2kl7_A            4 NECLTIPEACKGEMKCINHYGG-YLCLPRSAAVINDLHGEGP   44 (71)
T ss_dssp             CCTTCCCCSCTTEEEEEETTCC-EEEEETTSCCCSCCSCSSC
T ss_pred             ccccCCCCCCCCCCEeECCCCC-eEecccCCcccccccCCcc
Confidence            34444333453  478888777 9997 55677766666544

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=84.17  E-value=0.33  Score=39.84  Aligned_cols=30  Identities=23%  Similarity=0.464  Sum_probs=25.0

Q ss_pred             ccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           87 QSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        87 ~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      +.|+.++.+ |+|.|+.||+|..++++|...
T Consensus        15 ~~C~n~~gs-y~C~C~~Gy~~~~~g~~C~d~   44 (162)
T 1uzk_A           15 GNCVNTPGS-YICDCPPDFELNPTRVGCVDT   44 (162)
T ss_dssp             SEEEEETTE-EEEECCTTCEECTTSSBEECC
T ss_pred             CEeECCCCC-EEEeCCCCCeECCCCCcccCC
Confidence            467777665 999999999999899999753

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=84.11  E-value=0.24  Score=34.08  Aligned_cols=31  Identities=32%  Similarity=0.941  Sum_probs=22.0

Q ss_pred             cccCCCCCcCCCC--CccccccCCCCCcCeecCCCCccc
Q psy954           71 QKCSVNPCNIHNG--GCAQSCHPGPNGTAECKCDESTKL  107 (337)
Q Consensus        71 q~~~~npC~~~ng--gCs~lCl~~~~~~~~C~Cp~g~~L  107 (337)
                      ..+.++||.  ||  |   .|+..+++ ++|.||.||.+
T Consensus        12 d~C~snPC~--nga~g---tC~~~~g~-y~C~C~~Gy~~   44 (61)
T 2k2s_B           12 AACSSNPCG--PEAAG---TCKETNSG-YICRCNQGYRI   44 (61)
T ss_dssp             CHHHHCSSC--SSSCC---EEEECSSE-EEEECCTTEEE
T ss_pred             CcCcCCCCc--CCCcc---ccccCCCc-eEeECCCCCcc
Confidence            345668887  44  3   46666655 99999999973

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=84.11  E-value=0.61  Score=29.58  Aligned_cols=31  Identities=26%  Similarity=0.501  Sum_probs=20.0

Q ss_pred             CCCcCCCCCccccccC-CCCCcCeecCCCCcccccCCcccc
Q psy954           76 NPCNIHNGGCAQSCHP-GPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        76 npC~~~nggCs~lCl~-~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      +||.  |||   .|+. ...++++|.||.||.    |+.|.
T Consensus         9 ~pC~--ngg---~C~~~~~~~~~~C~C~~G~~----G~~Ce   40 (45)
T 1a3p_A            9 GYCL--NGG---VXMHIESLDSYTCNCVIGYS----GDRCQ   40 (45)
T ss_dssp             SCCS--SSC---EEEECTTTSSEEEECCTTEE----TTTTC
T ss_pred             CCCC--CCC---EEEeecCCCCEEEEcCCCCc----CCcCC
Confidence            3887  554   4552 223459999999995    55554

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=83.69  E-value=0.83  Score=36.94  Aligned_cols=35  Identities=40%  Similarity=0.896  Sum_probs=24.0

Q ss_pred             ccCCCCCcCCCCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      .+.++||.  |++   .|+..+++ ++|.||.||.    |+.|..
T Consensus        50 eC~~~pC~--n~g---~C~~~~~~-y~C~C~~G~~----G~~C~~   84 (146)
T 1x7a_L           50 QCEPNPCL--NGG---LCKDDINS-YECWCQVGFE----GKNCEL   84 (146)
T ss_dssp             CCSSCSSC--TTC---EEEECSSC-EEEECCSSEE----STTTCE
T ss_pred             cCCCCCCC--CCC---EeECCCCC-EEEecCCCCc----CCcCCC
Confidence            34456775  332   67777666 9999999996    566654

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=82.15  E-value=0.28  Score=41.24  Aligned_cols=59  Identities=19%  Similarity=0.481  Sum_probs=38.9

Q ss_pred             ccCCCCCcCCCCCccccccCCCCCcCeecCCCCccccc-CCcccccC-CCCCCCCcccc-CC-CceeC
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVN-EGRMCVAK-NITCDGSKFFC-RN-GKCIS  135 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~-~~~~C~~~-~~~C~~~~f~C-~~-g~CI~  135 (337)
                      .+..+||. ++|.|.+.|+..+.+ ++|.|+.||.+.. +++.|... .-.|..   .| .+ +.|+.
T Consensus        93 ~C~~~~C~-~~g~C~~~~~~~~g~-~~C~C~~Gy~g~~~~~~~C~~~~~~~C~~---~C~~~~~~C~n  155 (186)
T 1z1y_A           93 VCQYXNCG-ESGECIVEYLSEIQS-AGCSCAIGXVPNPEDEXXCTXTGETACQL---XCNTDNEVCXN  155 (186)
T ss_dssp             GGTTCCCC-TTEEEEEEEETTEEE-EEEEECTEEEEETTTTTEEEEEECCCCCC---CCCTTTEEEEE
T ss_pred             cCcCCCCC-CCCEEeeCCcCCCCC-ceEECCCCCcccCCCCCcceEcCCCcccc---cccccCcceec
Confidence            34556775 245677666666555 9999999999865 77888753 124652   67 53 57774

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=81.96  E-value=1.7  Score=41.52  Aligned_cols=49  Identities=8%  Similarity=0.101  Sum_probs=35.2

Q ss_pred             CCCCceEEEEEC----CEEEEEeCCCCceEEEecccCCceEEEeecccCCCcccee
Q psy954           14 ATIYPFAITVHR----NYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHV   65 (337)
Q Consensus        14 ~~~~Pf~Lav~~----d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v   65 (337)
                      .+.+|.+|++..    +.|||+|.. ..|++++..+|.-. .+...+ ..|.+|.+
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~-~~~~~~-~~P~giav  189 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVD-IKTTNI-GQCADVNF  189 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEE-EECCCC-SCEEEEEE
T ss_pred             ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEE-EeecCC-CCccEEEE
Confidence            467999999994    899999998 89999987666433 333332 45666554

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=81.89  E-value=3.2  Score=39.02  Aligned_cols=29  Identities=21%  Similarity=0.305  Sum_probs=25.1

Q ss_pred             CCce-EEEEE--CCEEEEEeCCCCceEEEecc
Q psy954           16 IYPF-AITVH--RNYIYWTDLQLRGVYRAEKH   44 (337)
Q Consensus        16 ~~Pf-~Lav~--~d~IYWtDw~~~~I~r~~k~   44 (337)
                      ..|+ +|++.  +++|||+|...+.|++++..
T Consensus       266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~  297 (409)
T 3hrp_A          266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD  297 (409)
T ss_dssp             CSSCCEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             CCccccEEEeCCCCEEEEEeCCCCEEEEEecC
Confidence            3588 99999  58999999999999998763

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=81.25  E-value=0.96  Score=29.79  Aligned_cols=31  Identities=29%  Similarity=0.666  Sum_probs=21.0

Q ss_pred             CCCcCCCCCcccccc--CCCCCcCeecCCCCcccccCCccccc
Q psy954           76 NPCNIHNGGCAQSCH--PGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        76 npC~~~nggCs~lCl--~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      +||.  |||   .|+  ...++ ++|.||.||.    |+.|..
T Consensus        12 ~pC~--ngg---~C~~~~~~~~-~~C~C~~G~~----G~~Ce~   44 (53)
T 1egf_A           12 GYCL--NGG---VCMHIESLDS-YTCNCVIGYS----GDRCQT   44 (53)
T ss_dssp             CSSC--SSC---EEEEESSSSC-EEEECCTTCC----SSSSCC
T ss_pred             CcCC--CCc---EEEeeCCCCC-EEEECCCCCc----CCcCCc
Confidence            4887  554   566  44444 9999999995    555643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=81.15  E-value=3.6  Score=35.90  Aligned_cols=43  Identities=9%  Similarity=0.089  Sum_probs=35.5

Q ss_pred             CCCceEEEEcCCCCceEEEEE--CCEEEEEeCCCCceEEEecccC
Q psy954            4 ATGASMVLISATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTG   46 (337)
Q Consensus         4 dG~~R~vl~~~~~~Pf~Lav~--~d~IYWtDw~~~~I~r~~k~~G   46 (337)
                      .|...++|......|-++++.  ++.|||++...+.|++.+..++
T Consensus        16 ~~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~   60 (296)
T 3e5z_A           16 AGAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ   60 (296)
T ss_dssp             TTCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC
T ss_pred             CCCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC
Confidence            455667777788899999998  5579999999999999998766

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=81.10  E-value=4.3  Score=36.20  Aligned_cols=37  Identities=11%  Similarity=0.085  Sum_probs=29.8

Q ss_pred             CCceEEEEECCEEEEEeCCCCceEEEecccCCceEEE
Q psy954           16 IYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEM   52 (337)
Q Consensus        16 ~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l   52 (337)
                      .++.||++.++.||++.|..+.|..++..+++....+
T Consensus        66 ~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i  102 (266)
T 2iwa_A           66 YFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNF  102 (266)
T ss_dssp             CCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             cceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEE
Confidence            3555789999999999999999999998776544433

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=80.22  E-value=1.9  Score=36.87  Aligned_cols=31  Identities=19%  Similarity=0.280  Sum_probs=25.7

Q ss_pred             cCCCCceEEEEE-CCEEEEEeCCCCceEEEec
Q psy954           13 SATIYPFAITVH-RNYIYWTDLQLRGVYRAEK   43 (337)
Q Consensus        13 ~~~~~Pf~Lav~-~d~IYWtDw~~~~I~r~~k   43 (337)
                      .....|.+|++. .+.||++++..+.|++++.
T Consensus       105 ~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~  136 (270)
T 1rwi_B          105 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAA  136 (270)
T ss_dssp             CSCSSEEEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             CCcCCCcceEECCCCCEEEEECCCCEEEEEEC
Confidence            345789999998 6689999999889998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	3e-10
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	2e-04
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	5e-10
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	1e-09
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	2e-08
d2fcwb1	39	g.12.1.1 (B:86-124) Ligand-binding domain of low-d	2e-04
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-10
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-09
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-08
d1f8za_	39	g.12.1.1 (A:) Ligand-binding domain of low-density	0.001
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	5e-10
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	1e-09
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	2e-08
d2fcwb2	39	g.12.1.1 (B:125-163) Ligand-binding domain of low-	7e-04
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	5e-10
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-09
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-08
d1d2la_	45	g.12.1.1 (A:) Ligand-binding domain of low-density	0.001
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	9e-10
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-09
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	3e-09
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	6e-09
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	8e-04
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	3e-09
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	2e-08
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	4e-08
d1f5ya1	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	0.002
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	6e-09
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-08
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-07
d1ajja_	37	g.12.1.1 (A:) Ligand-binding domain of low-density	0.001
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	2e-08
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	2e-08
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	3e-06
d1xfea2	44	g.12.1.1 (A:1-44) Ligand-binding domain of low-den	3e-05
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	8e-08
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	2e-07
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	1e-06
d1f5ya2	41	g.12.1.1 (A:45-85) Ligand-binding domain of low-de	4e-04
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	1e-07
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	2e-07
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	4e-06
d2gtlo2	41	g.12.1.1 (O:60-100) Extracellular hemoglobin linke	5e-04
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-07
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-07
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	4e-06
d1cr8a_	42	g.12.1.1 (A:) Ligand-binding domain of low-density	2e-04
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	5e-07
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	7e-07
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	4e-05
d1k7ba_	42	g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quai	9e-05
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	5e-07
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	1e-06
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	1e-05
d2gtlm2	42	g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Co	7e-04
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	7e-07
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	1e-06
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	4e-05
d1v9u5_	39	g.12.1.1 (5:) Very low-density lipoprotein recepto	0.001
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	2e-06
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	2e-06
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	3e-05
d2gtln2	41	g.12.1.1 (N:61-101) Extracellular hemoglobin linke	0.002
d2bz6l1	53	g.3.11.1 (L:90-142) Coagulation factor VIIa {Human	2e-04
d1rfnb_	57	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	3e-04

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 3e-10
 Identities = 14/55 (25%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 17  YPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQ 71
           +PF++ V  + ++WTD+    ++ A + TG+++  + + L  SP D+ ++   +Q
Sbjct: 210 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQ 263

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 22/153 (14%), Positives = 38/153 (24%), Gaps = 15/153 (9%)

Query: 1   MRIATGASMVLISATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLED 58
           M +       LI       A+      N IYW+DL  R +   +      +      +  
Sbjct: 15  MTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR 74

Query: 59  ---SPRDIHV-------YSADSQKCSVNPCNIHNGGCAQSCHPG---PNGTAECKCDEST 105
              +P  + V       Y  DS   +V+  +                P            
Sbjct: 75  DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM 134

Query: 106 KLVNEGRMCVAKNITCDGSKFFCRNGKCISRMW 138
              + G     K    +G   +    + I    
Sbjct: 135 YWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN 167

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (125), Expect = 5e-10
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           +TCS  EF C + KCI + + CD + DC D SDE +C
Sbjct: 1   KTCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
           +CS  +F C +G+CI+  ++CD D DC DGSDE
Sbjct: 2   TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE 34

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (113), Expect = 2e-08
 Identities = 19/34 (55%), Positives = 23/34 (67%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDED 153
           TC  ++F C +GKCISR + CD D DC D SDE 
Sbjct: 2   TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEA 35

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 11/49 (22%)

Query: 206 RKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADENTTALNCP 254
           + C +  EF C +       +CI ++++CD D DC+DG+DE     +CP
Sbjct: 1   KTCSQA-EFRCHDG------KCISRQFVCDSDRDCLDGSDE----ASCP 38

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (125), Expect = 5e-10
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 257 SSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
           ++C PD+F C +G CI+    CD + DC D SDE
Sbjct: 1   ATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (119), Expect = 3e-09
 Identities = 17/36 (47%), Positives = 20/36 (55%)

Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           TC  +EF C +  CI  +  CD E DC D SDE  C
Sbjct: 2   TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (111), Expect = 4e-08
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDE 152
           TC   +F C +G CI     CD + DC D SDE
Sbjct: 2   TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDE 34

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 6/36 (16%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
             EF C++        CI     CD + DC D +DE
Sbjct: 5   PDEFQCSDG------NCIHGSRQCDREYDCKDMSDE 34

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 5e-10
 Identities = 18/39 (46%), Positives = 24/39 (61%)

Query: 119 ITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
           +TC  + F C +  CI ++W+CD D DC D SDE P  C
Sbjct: 1   LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 39

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 17/36 (47%), Positives = 21/36 (58%)

Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDEGKE 293
           +C P  F C +  CI   W CD+D DC DGSDE  +
Sbjct: 2   TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
           TC    F C +  CI + + CD + DC D SDE+   
Sbjct: 2   TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR 38

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 7e-04
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 6/37 (16%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
              F C  +       CIP+ W CD DPDC DG+DE 
Sbjct: 5   PASFQCNSS------TCIPQLWACDNDPDCEDGSDEW 35

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 5e-10
 Identities = 20/39 (51%), Positives = 24/39 (61%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCN 158
            C   +F C N +CI   W CDGD+DC DNSDE P  C+
Sbjct: 5   QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH 43

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 19/33 (57%), Positives = 21/33 (63%)

Query: 258 SCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
            C P +F+C N RCI   W CD DNDC D SDE
Sbjct: 5   QCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (115), Expect = 1e-08
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
             C   EFAC N +CI++ + CDG++DC D SDE    
Sbjct: 4   PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 6/36 (16%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
             EF C  +      +CI ++W CDGD DC+D +DE
Sbjct: 8   PGEFACANS------RCIQERWKCDGDNDCLDNSDE 37

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.4 bits (135), Expect = 9e-10
 Identities = 12/66 (18%), Positives = 23/66 (34%)

Query: 1   MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSP 60
           +  A      ++    YPFA+T +   +Y+TD +   V   +      M       +   
Sbjct: 194 LNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRL 253

Query: 61  RDIHVY 66
             I + 
Sbjct: 254 YGITIA 259

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (121), Expect = 2e-09
 Identities = 23/43 (53%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 256 QSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE-GKECHDK 297
             SCS  QF C +GRCI   W CD DNDCGD SDE    C ++
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 3e-09
 Identities = 18/38 (47%), Positives = 27/38 (71%)

Query: 299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
            +CSS +F C + +CI + + CDG++DCGD SDE + N
Sbjct: 3   HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 6e-09
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 118 NITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
           + +C  ++F C +G+CI   W+CDGD+DCGD SDE    C
Sbjct: 2   SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 8e-04
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)

Query: 205 NRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
           +  C   T+F C   +      CIP+ W CDGD DC D +DE 
Sbjct: 2   SHSCSS-TQFKCNSGR------CIPEHWTCDGDNDCGDYSDET 37

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 3e-09
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 253 CPKQSSCSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
                 C  ++F C +G+CI+  W+CD   +C DGSDE
Sbjct: 2   SAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDE 39

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
            C+ ++F C++GKCIS  W CDG  +C D SDE    C
Sbjct: 7   RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 44

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (111), Expect = 4e-08
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
            C   EF CQ+ KCI   + CDG  +C D SDE    
Sbjct: 7   RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 43

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (77), Expect = 0.002
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
             EF C +       +CI  KW+CDG  +C DG+DE+
Sbjct: 10  RNEFQCQDG------KCISYKWVCDGSAECQDGSDES 40

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (117), Expect = 6e-09
 Identities = 16/32 (50%), Positives = 20/32 (62%)

Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
           CS  +F C +G CI++ W CD   DC D SDE
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 2e-08
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           CS+ EF C + +CI  ++ CDG  DC D+SDE NC
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 16/33 (48%), Positives = 20/33 (60%)

Query: 121 CDGSKFFCRNGKCISRMWSCDGDDDCGDNSDED 153
           C   +F C +G+CI   W CDG  DC D SDE+
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEE 34

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 37

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 6/36 (16%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
             EF C         +CI   W CDG PDC D +DE
Sbjct: 4   AFEFHCLSG------ECIHSSWRCDGGPDCKDKSDE 33

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 2e-08
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 259 CSPDQFSCGNGRCINTGWLCDHDNDCGDGSDE 290
             P++F C +G CI    +C+   DC D SDE
Sbjct: 7   EGPNKFKCHSGECITLDKVCNMARDCRDWSDE 38

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 2e-08
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 120 TCDG-SKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC 157
            C+G +KF C +G+CI+    C+   DC D SDE    C
Sbjct: 5   LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC 43

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (97), Expect = 3e-06
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 301 CSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN 336
               +F C + +CI     C+   DC D SDE    
Sbjct: 7   EGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKE 42

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 6/44 (13%)

Query: 204 NNRKCDEETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
           N   C+   +F C   +      CI    +C+   DC D +DE 
Sbjct: 2   NVTLCEGPNKFKCHSGE------CITLDKVCNMARDCRDWSDEP 39

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 8e-08
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 258 SCSPDQFSC--GNGRCINTGWLCDHDNDCGDGSDE 290
           +C    FSC     RCI   W CD   DC +GSDE
Sbjct: 4   TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 300 TCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           TC S +F+C  +  +CI + + CDG+ DC + SDE  C
Sbjct: 4   TCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 118 NITCDGSKFFC--RNGKCISRMWSCDGDDDCGDNSDE 152
           ++TC    F C  R  +CI + W CDG  DC + SDE
Sbjct: 2   SVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
             +F+C         +CIP+ W CDG  DC +G+DE
Sbjct: 7   SGDFSC----GGRVNRCIPQFWRCDGQVDCDNGSDE 38

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 300 TCSSEEFAC--QNFKCIRKTYHCDGEDDCGDRSDEFNC 335
           +C   E  C   + +CI K + CDG +DC +  DE +C
Sbjct: 2   SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 45.2 bits (107), Expect = 2e-07
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 258 SCSPDQFSC--GNGRCINTGWLCDHDNDCGDGSDE 290
           SC   +  C   + +CI+  ++CD  NDC +G DE
Sbjct: 2   SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 40.9 bits (96), Expect = 4e-06
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 120 TCDGSKFFCR--NGKCISRMWSCDGDDDCGDNSDE 152
           +CD  +  C   + +CIS+++ CDG +DC +  DE
Sbjct: 2   SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE 36

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
           E E  C      +  QCI K ++CDG  DC +G DE
Sbjct: 5   EHEHQC----GGDDPQCISKLFVCDGHNDCRNGEDE 36

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 257 SSCSPDQFSC-GNGRCINTGWLCDHDNDCGDGSDE 290
             C  D+F C  +G CI   W CD D DC D SDE
Sbjct: 2   GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 299 RTCSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNCN 336
             C ++EF C+ +  CI   + CDG+ DC D SDE +C 
Sbjct: 2   GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 4e-06
 Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 120 TCDGSKFFCR-NGKCISRMWSCDGDDDCGDNSDED 153
            C   +F CR +G CI   W CDGD DC D+SDE 
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
             EF C  +       CIP +W CDGD DC+D +DE
Sbjct: 6   TDEFQCRLDG-----LCIPLRWRCDGDTDCMDSSDE 36

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 43.7 bits (103), Expect = 5e-07
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 5/41 (12%)

Query: 300 TCSSEEFACQNF-----KCIRKTYHCDGEDDCGDRSDEFNC 335
           +C   +F C        +C  + + CDG  DC D  DE+ C
Sbjct: 1   SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 43.4 bits (102), Expect = 7e-07
 Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 258 SCSPDQFSCGN-----GRCINTGWLCDHDNDCGDGSDE 290
           SC P QF C       G C    WLCD   DC DG DE
Sbjct: 1   SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 38.0 bits (88), Expect = 4e-05
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 120 TCDGSKFFCRN-----GKCISRMWSCDGDDDCGDNSDE 152
           +C   +F C       G+C  + W CDG  DC D  DE
Sbjct: 1   SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

 Score = 37.2 bits (86), Expect = 9e-05
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
             +F C+        +C P+ WLCDG PDC DG DE
Sbjct: 4   PGQFRCS-EPPGAHGECYPQDWLCDGHPDCDDGRDE 38

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 43.7 bits (103), Expect = 5e-07
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 120 TCDGSKFFCRN--GKCISRMWSCDGDDDCGDNSDEDPNYCN 158
            CD  +  CR    +CI  +  CDG+ DC D SDEDP  C+
Sbjct: 2   HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 42

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 259 CSPDQFSCGN--GRCINTGWLCDHDNDCGDGSDE 290
           C   +  C      CI+    CD + DC DGSDE
Sbjct: 3   CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE 36

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)

Query: 300 TCSSEEFACQNF--KCIRKTYHCDGEDDCGDRSDEFNCN 336
            C   E  C+    +CI     CDGE DC D SDE    
Sbjct: 2   HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPET 40

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 42

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 34.8 bits (80), Expect = 7e-04
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
           E E  C      +  +CI     CDG+ DC DG+DE+
Sbjct: 5   EHESEC----RGDVPECIHDLLFCDGEKDCRDGSDED 37

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 7e-07
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 259 CSPDQFSCGNG--RCINTGWLCDHDNDCGDGSDE 290
           C   + SCG    +CI   W CD +NDC  G DE
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 301 CSSEEFACQN--FKCIRKTYHCDGEDDCGDRSDEFNC 335
           C   E +C     +CI  ++ CDGE+DC    DE NC
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 4e-05
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 121 CDGSKFFCRNG--KCISRMWSCDGDDDCGDNSDED 153
           C   +  C     +CI   W CDG++DC    DE+
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEE 35

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.001
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)

Query: 211 ETEFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADE 246
             E +C      +  QCIP  W CDG+ DC  G DE
Sbjct: 3   IHEISC----GAHSTQCIPVSWRCDGENDCDSGEDE 34

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 121 CDGSKFFCRN--GKCISRMWSCDGDDDCGDNSDEDPNYCN 158
           C+   F C     +CIS +  CDG  DC +  DEDP+ C+
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCD 41

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 41.8 bits (98), Expect = 2e-06
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 2/34 (5%)

Query: 259 CSPDQFSCGN--GRCINTGWLCDHDNDCGDGSDE 290
           C    F CG     CI+   +CD   DC +  DE
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDE 35

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 301 CSSEEFACQNF--KCIRKTYHCDGEDDCGDRSDEFNCN 336
           C    F C     +CI     CDG  DC +  DE    
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDV 39

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]} Length = 41

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 4/35 (11%)

Query: 213 EFTCTENKAWNRAQCIPKKWLCDGDPDCVDGADEN 247
            F C      N  +CI    +CDG  DC +  DE+
Sbjct: 6   TFQC----GGNEQECISDLLVCDGHKDCHNAHDED 36

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 78  CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
           C   NGGC Q C         C+C E   L+ +G  C  
Sbjct: 2   CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTP 40

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 78  CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA 116
           CNI NG C Q C    +    C C E  +L    + C  
Sbjct: 3   CNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEP 41

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.37
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.36
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.35
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.34
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.32
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.31
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.3
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.29
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.29
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.29
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.28
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.28
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.27
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.27
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.23
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	99.23
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.22
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	99.22
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.2
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.2
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.19
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.19
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.18
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.13
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.11
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	99.11
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.1
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	99.09
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.07
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	99.06
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	99.06
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	99.05
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	99.0
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	98.96
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	98.95
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	98.94
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	98.94
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	98.93
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.84
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.63
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.55
d1nt0a3	45	Mannose-binding protein associated serine protease	98.44
d1szba2	45	Mannose-binding protein associated serine protease	98.39
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.03
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.9
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.89
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.75
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.61
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	97.5
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.42
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.14
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.82
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	94.46
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	93.73
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	93.01
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	91.7
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	91.41
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	91.34
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	91.21
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	90.53
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	90.22
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	89.72
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	89.7
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	89.08
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	87.86
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	87.46
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	85.97
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	84.75
d1dx5i2	35	Thrombomodulin, different EGF-like domains {Human	84.48
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	81.72

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.1e-14  Score=88.59  Aligned_cols=37  Identities=46%  Similarity=1.077  Sum_probs=34.3

Q ss_pred             CCCCCccccCCCceeCCccccCCCCCCCCCCCCCCCc
Q psy954          120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNY  156 (337)
Q Consensus       120 ~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~~~  156 (337)
                      +|.+++|+|.+|+||+..|+|||++||+|||||.+..
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~~   38 (39)
T d2fcwb2           2 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQR   38 (39)
T ss_dssp             HCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGGG
T ss_pred             ccCCCceEcCCCCeEChhhcCCCCCCCCCCCcCCCCc
Confidence            5889999999999999999999999999999998643

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.9e-13  Score=88.36  Aligned_cols=40  Identities=50%  Similarity=1.175  Sum_probs=36.4

Q ss_pred             CCCCCCccccCCCceeCCccccCCCCCCCCCCCCCCCccC
Q psy954          119 ITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYCN  158 (337)
Q Consensus       119 ~~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~~~C~  158 (337)
                      ..|.+++|+|.+|+||+..|+|||++||.|||||.+..|.
T Consensus         4 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~~C~   43 (45)
T d1d2la_           4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCH   43 (45)
T ss_dssp             CBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTTTCC
T ss_pred             CcCCCCCeEcCCCCeEChhhhCcCcCcCCCCCCCCcCcCc
Confidence            3599999999999999999999999999999999875554

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.1e-13  Score=86.81  Aligned_cols=38  Identities=47%  Similarity=0.995  Sum_probs=36.1

Q ss_pred             CCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCCC
Q psy954          300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCNY  337 (337)
Q Consensus       300 ~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~~  337 (337)
                      +|++.+|+|.+|.||+..|+|||+.||.|||||.+||+
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~Cpv   39 (39)
T d2fcwb1           2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV   39 (39)
T ss_dssp             CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTTHHH
T ss_pred             cCCCCCEEcCCCCEEcchhcCcCcCcCcCCchhcCCCC
Confidence            68889999999999999999999999999999999974

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.3e-13  Score=87.71  Aligned_cols=37  Identities=46%  Similarity=1.093  Sum_probs=34.7

Q ss_pred             CCCCCCccccCCCceeCCccccCCCCCCCCCCCCCCC
Q psy954          119 ITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPN  155 (337)
Q Consensus       119 ~~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~~  155 (337)
                      .+|.+++|+|.+|+|||..|+|||++||.|||||.+.
T Consensus         6 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c   42 (44)
T d1f5ya1           6 DRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE   42 (44)
T ss_dssp             CCCCSSSEECSSSCEECTTTTTSSSCSSSSSGGGTTS
T ss_pred             CccCCCCeEcCCCCeEChhHcCCCcCcCCCCCcCCCC
Confidence            4699999999999999999999999999999999874

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.2e-13  Score=84.59  Aligned_cols=35  Identities=54%  Similarity=1.105  Sum_probs=33.5

Q ss_pred             CCCCCccccCCCceeCCccccCCCCCCCCCCCCCC
Q psy954          120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       120 ~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      +|.+++|+|.+|+||+..|+|||+.||.|||||.+
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb1           2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEAS   36 (39)
T ss_dssp             CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTT
T ss_pred             cCCCCCEEcCCCCEEcchhcCcCcCcCcCCchhcC
Confidence            68899999999999999999999999999999975

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3e-13  Score=84.50  Aligned_cols=35  Identities=43%  Similarity=0.850  Sum_probs=33.7

Q ss_pred             CCCCCccccCCCceeCCccccCCCCCCCCCCCCCC
Q psy954          120 TCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       120 ~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      +|.+++|+|.+|+||+..|+|||+.||+|+|||.+
T Consensus         2 sC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d1f8za_           2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVG   36 (39)
T ss_dssp             CCCTTEEECSSSCEEETTTSSSCCCCSTTSGGGSS
T ss_pred             CCCCCceEeCCCCeEChhhcCCCCCcCCCCchhcc
Confidence            69999999999999999999999999999999976

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.6e-13  Score=88.46  Aligned_cols=39  Identities=49%  Similarity=1.247  Sum_probs=35.5

Q ss_pred             CCCCCCccccCCCceeCCccccCCCCCCCCCCCCCCCcc
Q psy954          119 ITCDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC  157 (337)
Q Consensus       119 ~~C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~~~C  157 (337)
                      .+|.+++|+|.+|+||+..|+|||++||.|+|||.+..|
T Consensus         3 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c~C   41 (44)
T d1j8ea_           3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANC   41 (44)
T ss_dssp             SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHHHH
T ss_pred             ccCCCCcEEcCCCCEEChhhcCcCcccCCCCCcCCCCCC
Confidence            469999999999999999999999999999999987443

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.4e-13  Score=84.96  Aligned_cols=38  Identities=39%  Similarity=0.789  Sum_probs=33.9

Q ss_pred             CCC-CCccccCCCceeCCccccCCCCCCCCCCCCCCCcc
Q psy954          120 TCD-GSKFFCRNGKCISRMWSCDGDDDCGDNSDEDPNYC  157 (337)
Q Consensus       120 ~C~-~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~~~C  157 (337)
                      .|. +++|+|.+|+||+..|+|||+.||+|+|||...+|
T Consensus         5 ~C~~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~~C   43 (44)
T d1xfea2           5 LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKEC   43 (44)
T ss_dssp             SCCSTTEEECTTSCEEESTTTTCSSCCCSSCSSSCTTTS
T ss_pred             cCCCCCeEECCCCCeEchhhcCCCCCCCCCCCccCcccC
Confidence            354 68999999999999999999999999999986554

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.8e-13  Score=82.66  Aligned_cols=34  Identities=47%  Similarity=1.161  Sum_probs=32.7

Q ss_pred             CCCCccccCCCceeCCccccCCCCCCCCCCCCCC
Q psy954          121 CDGSKFFCRNGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       121 C~~~~f~C~~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      |.+++|+|.+|+||+..|+|||+.||+|||||.+
T Consensus         2 C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~   35 (37)
T d1ajja_           2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCCceEcCCCCEECchhcCCCCCcCCCCchhhc
Confidence            8889999999999999999999999999999976

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.8e-12  Score=114.98  Aligned_cols=72  Identities=21%  Similarity=0.486  Sum_probs=64.4

Q ss_pred             CccCCCceEEEE---cCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccCcccc
Q psy954            1 MRIATGASMVLI---SATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSADSQKC   73 (337)
Q Consensus         1 ~~~dG~~R~vl~---~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~~q~~   73 (337)
                      +++||++|++|+   ..+.+|++||+++++|||+||..++|++++|.+|+..+++...+ ..|++|+|||+..||-
T Consensus       191 ~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~~~~~~~~~~-~~p~~i~v~~~~~QP~  265 (266)
T d1ijqa1         191 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENL-LSPEDMVLFHNLTQPR  265 (266)
T ss_dssp             EETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSC-SCCCCEEEESGGGSCC
T ss_pred             EECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCcceEEEEcCC-CCceEEEEECCccCCC
Confidence            468999999887   34689999999999999999999999999999999888888776 6799999999998874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.9e-12  Score=115.96  Aligned_cols=69  Identities=17%  Similarity=0.240  Sum_probs=62.6

Q ss_pred             CccCCCceEEEEcCCCCceEEEEECCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeeccC
Q psy954            1 MRIATGASMVLISATIYPFAITVHRNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSAD   69 (337)
Q Consensus         1 ~~~dG~~R~vl~~~~~~Pf~Lav~~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~~   69 (337)
                      ++++|++|++|+.++.|||+|||++++||||||..++|++++|.+|....++......+|+||+|+|++
T Consensus       194 ~~~~g~~~~~v~~~~~~P~~lav~~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~~  262 (263)
T d1npea_         194 LNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQ  262 (263)
T ss_dssp             EETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSC
T ss_pred             EECCCCCeEEEECCCCCcEEEEEECCEEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCCC
Confidence            468999999999889999999999999999999999999999999988888776666789999999874

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-12  Score=83.03  Aligned_cols=36  Identities=42%  Similarity=1.082  Sum_probs=32.9

Q ss_pred             CCCCCCccccC--CCceeCCccccCCCCCCCCCCCCCC
Q psy954          119 ITCDGSKFFCR--NGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       119 ~~C~~~~f~C~--~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      .+|.+++|+|.  +++|||..|+|||+.||.|||||.+
T Consensus         3 ~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   40 (41)
T d1f5ya2           3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQG   40 (41)
T ss_dssp             TTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTT
T ss_pred             cccCCCceECCCCCCCCccchhcCCCcCcCcCcccccC
Confidence            47999999996  4689999999999999999999975

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-12  Score=81.93  Aligned_cols=37  Identities=46%  Similarity=0.964  Sum_probs=35.5

Q ss_pred             CCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       300 ~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      +|.+.+|+|.+|.||+..|+|||+.||.|||||.+|.
T Consensus         2 sC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1f8za_           2 TCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV   38 (39)
T ss_dssp             CCCTTEEECSSSCEEETTTSSSCCCCSTTSGGGSSSC
T ss_pred             CCCCCceEeCCCCeEChhhcCCCCCcCCCCchhccCc
Confidence            6888999999999999999999999999999999985

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.1e-12  Score=81.04  Aligned_cols=37  Identities=49%  Similarity=1.039  Sum_probs=34.9

Q ss_pred             CCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       300 ~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      +|...+|+|.+|+||+..|+|||+.||.|||||.+|.
T Consensus         1 PC~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~Cs   37 (37)
T d1ajja_           1 PCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA   37 (37)
T ss_dssp             CCCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred             CCCCCceEcCCCCEECchhcCCCCCcCCCCchhhccC
Confidence            4788999999999999999999999999999999985

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.9e-12  Score=81.48  Aligned_cols=36  Identities=50%  Similarity=1.086  Sum_probs=33.4

Q ss_pred             CCCCCCccccC-CCceeCCccccCCCCCCCCCCCCCC
Q psy954          119 ITCDGSKFFCR-NGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       119 ~~C~~~~f~C~-~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      .+|.+++|+|. +++||+..|+|||+.||.|+|||.+
T Consensus         2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d1cr8a_           2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKS   38 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTT
T ss_pred             CCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhcc
Confidence            47999999996 5899999999999999999999986

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.23  E-value=1.9e-12  Score=81.75  Aligned_cols=38  Identities=42%  Similarity=1.057  Sum_probs=33.3

Q ss_pred             CCCCCccccC--CCceeCCccccCCCCCCCCCCCCCCCcc
Q psy954          120 TCDGSKFFCR--NGKCISRMWSCDGDDDCGDNSDEDPNYC  157 (337)
Q Consensus       120 ~C~~~~f~C~--~g~CI~~~~~CDG~~DC~DgsDE~~~~C  157 (337)
                      .|.+++|+|.  +|+||+..|+|||++||+|||||.+..|
T Consensus         1 ~C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~~~C   40 (41)
T d2gtln2           1 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC   40 (41)
T ss_dssp             SSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGG
T ss_pred             CCCCCeeECCCcCCCeechHHcCCCCccCCCCCccccccC
Confidence            3889999996  4799999999999999999999986443

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.5e-12  Score=80.60  Aligned_cols=37  Identities=43%  Similarity=0.987  Sum_probs=33.9

Q ss_pred             CCCCCCcEEcC--CCCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQ--NFKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       299 ~~C~~~~f~C~--~~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      .+|++.+|+|.  +++|||..|+|||+.||.|||||.+|
T Consensus         3 ~~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           3 VTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             TTCCSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred             cccCCCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence            46888999995  56899999999999999999999988

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.22  E-value=9.6e-13  Score=83.63  Aligned_cols=36  Identities=47%  Similarity=1.017  Sum_probs=32.4

Q ss_pred             CCCCCccccCC--CceeCCccccCCCCCCCCCCCCCCC
Q psy954          120 TCDGSKFFCRN--GKCISRMWSCDGDDDCGDNSDEDPN  155 (337)
Q Consensus       120 ~C~~~~f~C~~--g~CI~~~~~CDG~~DC~DgsDE~~~  155 (337)
                      .|.+++|+|.+  ++||+..|+|||+.||+|||||.+.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~~   39 (42)
T d2gtlm2           2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE   39 (42)
T ss_dssp             CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHH
T ss_pred             CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCCcc
Confidence            48899999975  6899999999999999999999753

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.20  E-value=1.4e-12  Score=82.49  Aligned_cols=39  Identities=36%  Similarity=0.926  Sum_probs=35.5

Q ss_pred             CCCCCCcEEcC--CCCeecCCCCCCCcCCCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQ--NFKCIRKTYHCDGEDDCGDRSDEFNCNY  337 (337)
Q Consensus       299 ~~C~~~~f~C~--~~~Ci~~~~~CDg~~dC~dgsDE~~C~~  337 (337)
                      ++|.+.+|+|.  +++||+..|+|||+.||.|||||.+|.+
T Consensus         1 P~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C~l   41 (41)
T d2gtlo2           1 PSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTL   41 (41)
T ss_dssp             CSSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCCC
T ss_pred             CCCCcCeeECCCCCCcEeechhccCCCCcCCCCchhccCcC
Confidence            36888999996  5789999999999999999999999975

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6e-12  Score=79.99  Aligned_cols=38  Identities=42%  Similarity=0.981  Sum_probs=35.1

Q ss_pred             CCCCCCcEEcC-CCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQ-NFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       299 ~~C~~~~f~C~-~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      ..|++.+|+|. +++||+..|+|||+.||.|||||.+|+
T Consensus         2 ~~C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C~   40 (42)
T d1cr8a_           2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE   40 (42)
T ss_dssp             CCSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred             CCCCCCceEcCCCCEEccchhcCCCcCcCCCcchhccCC
Confidence            46888999995 689999999999999999999999996

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.9e-12  Score=80.96  Aligned_cols=39  Identities=41%  Similarity=0.800  Sum_probs=36.2

Q ss_pred             CCCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          298 YRTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       298 ~~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      ...|.+.+|+|.+++|||..|+|||+.||.|||||.+|.
T Consensus         5 ~~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c~   43 (44)
T d1f5ya1           5 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET   43 (44)
T ss_dssp             CCCCCSSSEECSSSCEECTTTTTSSSCSSSSSGGGTTSS
T ss_pred             CCccCCCCeEcCCCCeEChhHcCCCcCcCCCCCcCCCCc
Confidence            357888999999999999999999999999999999874

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.1e-12  Score=80.02  Aligned_cols=34  Identities=35%  Similarity=0.959  Sum_probs=31.4

Q ss_pred             CCCCccccCCC--ceeCCccccCCCCCCCCCCCCCC
Q psy954          121 CDGSKFFCRNG--KCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       121 C~~~~f~C~~g--~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      |.++||+|.+|  +||+..|+|||++||+|||||.+
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSS
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCCCCchhcc
Confidence            67899999875  69999999999999999999986

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.18  E-value=1.4e-12  Score=82.57  Aligned_cols=35  Identities=37%  Similarity=1.000  Sum_probs=32.6

Q ss_pred             CCCCCccccC--CCceeCCccccCCCCCCCCCCCCCC
Q psy954          120 TCDGSKFFCR--NGKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       120 ~C~~~~f~C~--~g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      +|.++||+|.  +++||+..|+|||++||+|+|||.+
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~   38 (41)
T d2gtlo2           2 SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKD   38 (41)
T ss_dssp             SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHC
T ss_pred             CCCcCeeECCCCCCcEeechhccCCCCcCCCCchhcc
Confidence            6999999996  5799999999999999999999976

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.6e-12  Score=78.46  Aligned_cols=36  Identities=42%  Similarity=1.027  Sum_probs=32.8

Q ss_pred             CCCCcEEcCCC--CeecCCCCCCCcCCCCCCCCCCCCC
Q psy954          301 CSSEEFACQNF--KCIRKTYHCDGEDDCGDRSDEFNCN  336 (337)
Q Consensus       301 C~~~~f~C~~~--~Ci~~~~~CDg~~dC~dgsDE~~C~  336 (337)
                      |++.+|+|.++  +||+..|+|||+.||.|||||.+|.
T Consensus         1 C~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C~   38 (39)
T d1v9u5_           1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG   38 (39)
T ss_dssp             CCTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSCC
T ss_pred             CCCCceECCCCCCCeeechhcCcCcccCCCCchhccCC
Confidence            56789999875  5999999999999999999999995

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8.1e-12  Score=77.94  Aligned_cols=36  Identities=39%  Similarity=0.914  Sum_probs=33.4

Q ss_pred             CCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          300 TCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       300 ~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      +|++++|+|.+|.||+..|+|||+.||.|||||..+
T Consensus         2 tC~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~   37 (39)
T d2fcwb2           2 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ   37 (39)
T ss_dssp             HCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGG
T ss_pred             ccCCCceEcCCCCeEChhhcCCCCCCCCCCCcCCCC
Confidence            478899999999999999999999999999999753

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=99.11  E-value=1.1e-11  Score=78.92  Aligned_cols=35  Identities=40%  Similarity=0.984  Sum_probs=31.6

Q ss_pred             CCCCCccccCC-----CceeCCccccCCCCCCCCCCCCCC
Q psy954          120 TCDGSKFFCRN-----GKCISRMWSCDGDDDCGDNSDEDP  154 (337)
Q Consensus       120 ~C~~~~f~C~~-----g~CI~~~~~CDG~~DC~DgsDE~~  154 (337)
                      +|.++||+|.+     ++|||..|+|||++||+|||||.+
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~   40 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   40 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhc
Confidence            48889999974     479999999999999999999975

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.4e-11  Score=78.26  Aligned_cols=37  Identities=46%  Similarity=1.021  Sum_probs=34.7

Q ss_pred             CCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       299 ~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      ..|+..+|+|.+|+||+..++|||+.||.|||||..+
T Consensus         4 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           4 PQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             CBTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             CcCCCCCeEcCCCCeEChhhhCcCcCcCCCCCCCCcC
Confidence            5788899999999999999999999999999999875

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1e-11  Score=81.94  Aligned_cols=41  Identities=29%  Similarity=0.750  Sum_probs=36.3

Q ss_pred             CCCcCCCCCccccccCCCC-----CcCeecCCCCcccccCCccccc
Q psy954           76 NPCNIHNGGCAQSCHPGPN-----GTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~-----~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      +.|+.+||||+|+||+.|.     ++++|+||.||+|..|+++|++
T Consensus         5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~tCia   50 (50)
T d1ijqa2           5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSCLT   50 (50)
T ss_dssp             SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECTTSSCEEC
T ss_pred             cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECCCCCcccC
Confidence            5788899999999998773     4599999999999999999974

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.2e-11  Score=79.45  Aligned_cols=37  Identities=46%  Similarity=1.075  Sum_probs=34.7

Q ss_pred             CCCCCCcEEcCCCCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          299 RTCSSEEFACQNFKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       299 ~~C~~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      ..|++.+|+|.+++||+..++|||+.||.|||||.+|
T Consensus         3 ~~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~c   39 (44)
T d1j8ea_           3 HSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SSSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             ccCCCCcEEcCCCCEEChhhcCcCcccCCCCCcCCCC
Confidence            4688899999999999999999999999999999875

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=99.06  E-value=2.2e-11  Score=77.37  Aligned_cols=36  Identities=36%  Similarity=1.012  Sum_probs=32.4

Q ss_pred             CCCCCcEEcCC-----CCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          300 TCSSEEFACQN-----FKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       300 ~C~~~~f~C~~-----~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      +|++.+|+|.+     ++|||.+|+|||+.||+|||||.+|
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~C   41 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   41 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhcc
Confidence            47788999964     4799999999999999999999988

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.2e-11  Score=82.54  Aligned_cols=40  Identities=33%  Similarity=0.801  Sum_probs=37.1

Q ss_pred             CcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        78 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      |+.+||||+|+|++++++.++|+||.||+|..|+++|.+.
T Consensus         2 C~~~NGGC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~   41 (53)
T d2bz6l1           2 CVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPT   41 (53)
T ss_dssp             TTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEEC
T ss_pred             CCCCCCCCcCEeeeCCCCCEEeECCCCCEECCCCCcccCC
Confidence            7889999999999999887899999999999999999874

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.7e-11  Score=83.02  Aligned_cols=48  Identities=31%  Similarity=0.761  Sum_probs=41.2

Q ss_pred             CCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccCCCCCCCCccccCC
Q psy954           77 PCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAKNITCDGSKFFCRN  130 (337)
Q Consensus        77 pC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~~~~C~~~~f~C~~  130 (337)
                      -|+.+||||+|+|+++++++++|+|+.||+|..|+++|.+.      .+|.|..
T Consensus         2 ~C~~~NGgC~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~------~~fpCG~   49 (57)
T d1rfnb_           2 TCNIKNGRCEQFCKNSADNKVVCSCTEGYRLAENQKSCEPA------VPFPCGR   49 (57)
T ss_dssp             CTTGGGGGCSSEEEECTTSCEEEECCTTEEECTTSSSEEEC------SSSCTTC
T ss_pred             ccCCCCCCcccEeeeCCCCCeEeECCCCCEECCCCCccccC------CCcCCCC
Confidence            37889999999999998877999999999999999999874      3566643

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=4e-11  Score=79.10  Aligned_cols=39  Identities=28%  Similarity=0.668  Sum_probs=36.1

Q ss_pred             CcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        78 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      |+.+||||+|+|+.++.+ ++|+||.||+|..|+++|.+.
T Consensus         2 C~~~NGgC~~~C~~~~g~-~~C~C~~Gy~L~~D~~tC~~~   40 (50)
T d1autl2           2 CSLDNGGCTHYCLEEVGW-RRCSCAPGYKLGDDLLQCHPA   40 (50)
T ss_dssp             SSSGGGGCSSEEEECSSS-EEEECCTTEEECTTSSCEEEC
T ss_pred             CCCCCCCcccEeecCCCC-eEEECCCCCEECCCCCccccC
Confidence            778899999999999876 999999999999999999874

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=3e-10  Score=72.54  Aligned_cols=35  Identities=34%  Similarity=0.670  Sum_probs=31.8

Q ss_pred             CCC-CCcEEcCCCCeecCCCCCCCcCCCCCCCCCCC
Q psy954          300 TCS-SEEFACQNFKCIRKTYHCDGEDDCGDRSDEFN  334 (337)
Q Consensus       300 ~C~-~~~f~C~~~~Ci~~~~~CDg~~dC~dgsDE~~  334 (337)
                      .|. +.+|+|.+|+||+..|+|||+.||.|||||..
T Consensus         5 ~C~~~~~f~C~~g~CI~~~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2           5 LCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             SCCSTTEEECTTSCEEESTTTTCSSCCCSSCSSSCT
T ss_pred             cCCCCCeEECCCCCeEchhhcCCCCCCCCCCCccCc
Confidence            454 68999999999999999999999999999963

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.95  E-value=2.1e-10  Score=72.19  Aligned_cols=35  Identities=34%  Similarity=0.771  Sum_probs=31.6

Q ss_pred             CCCCcEEcC--CCCeecCCCCCCCcCCCCCCCCCCCC
Q psy954          301 CSSEEFACQ--NFKCIRKTYHCDGEDDCGDRSDEFNC  335 (337)
Q Consensus       301 C~~~~f~C~--~~~Ci~~~~~CDg~~dC~dgsDE~~C  335 (337)
                      |++.+|+|.  ++.||+..|+|||+.||+|||||..+
T Consensus         2 C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~~   38 (41)
T d2gtln2           2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD   38 (41)
T ss_dssp             SCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGG
T ss_pred             CCCCeeECCCcCCCeechHHcCCCCccCCCCCccccc
Confidence            778999996  47899999999999999999999753

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=98.94  E-value=2.2e-10  Score=72.50  Aligned_cols=34  Identities=44%  Similarity=0.891  Sum_probs=31.1

Q ss_pred             CCCCCcEEcCC--CCeecCCCCCCCcCCCCCCCCCC
Q psy954          300 TCSSEEFACQN--FKCIRKTYHCDGEDDCGDRSDEF  333 (337)
Q Consensus       300 ~C~~~~f~C~~--~~Ci~~~~~CDg~~dC~dgsDE~  333 (337)
                      .|++++|+|.+  +.||+..|+|||+.||.|||||.
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~   37 (42)
T d2gtlm2           2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDED   37 (42)
T ss_dssp             CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCC
Confidence            47889999974  68999999999999999999995

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.94  E-value=1e-10  Score=77.52  Aligned_cols=39  Identities=31%  Similarity=0.834  Sum_probs=35.9

Q ss_pred             CcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        78 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      |+.+||||+|+|+.++.+ ++|+||.||+|..|+++|.+.
T Consensus         1 C~~~NGgC~h~C~~~~~~-~~C~C~~Gy~L~~D~~tC~~~   39 (51)
T d1kigl_           1 CSLDNGGCDQFCREERSE-VRCSCAHGYVLGDDSKSCVST   39 (51)
T ss_dssp             CCTTTTSSSSCCCEETTE-ECCCCCTTEEECTTSSCEEEC
T ss_pred             CCCCCCCcccEeEcCCCc-EEeEcCCCCEECCCCCccccC
Confidence            678899999999998766 999999999999999999874

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.6e-11  Score=78.70  Aligned_cols=39  Identities=33%  Similarity=0.924  Sum_probs=36.2

Q ss_pred             CcCCCCCccccccCCCCCcCeecCCCCcccccCCcccccC
Q psy954           78 CNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVAK  117 (337)
Q Consensus        78 C~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~~  117 (337)
                      |+.+||||+|+|+.++.+ ++|+||.||.|..|+++|.+.
T Consensus         3 C~~~NGgC~h~C~n~~g~-~~C~C~~Gy~L~~D~~tC~~~   41 (51)
T d2p3ua1           3 CSLDNGDCDQFCHEEQNS-VVCSCARGYTLADNGKACIPT   41 (51)
T ss_dssp             GGTGGGGCSSEEEEETTE-EEEECCTTEEECTTSSCEEES
T ss_pred             cCCCCCCcccEeecCCCC-eEeEcCCCCEECCCCCccccC
Confidence            778899999999999876 999999999999999999874

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=2.9e-10  Score=71.23  Aligned_cols=39  Identities=38%  Similarity=0.793  Sum_probs=35.1

Q ss_pred             CCCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccc
Q psy954           75 VNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        75 ~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      .|+|+.+||+|+|+|+.++.+ ++|+||.||+|. |+++|.
T Consensus         2 ~neC~~~nggC~h~C~n~~g~-~~C~C~~Gy~L~-d~~tC~   40 (40)
T d3bpse1           2 TNECLDNNGGCSHVCNDLKIG-YECLCPDGFQLV-AQRRCE   40 (40)
T ss_dssp             SCGGGTGGGGCSSEEEECSSS-EEEECCTTCCEE-TTTEEC
T ss_pred             cccCCCCCCCCcCEEEcCCCC-EEEECCCCCEEC-CCCcCC
Confidence            489999999999999999977 999999999995 788873

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3.9e-09  Score=66.63  Aligned_cols=39  Identities=21%  Similarity=0.411  Sum_probs=34.2

Q ss_pred             CCcC-CCCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           77 PCNI-HNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        77 pC~~-~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      .|+. .+++|+|+|+.++.+ ++|+||.||+|..|+++|.+
T Consensus         2 EC~~~~~~~C~~~C~n~~Gs-y~C~C~~Gy~L~~d~~tC~~   41 (42)
T d1nzia2           2 ECTDFVDVPCSHFCNNFIGG-YFCSCPPEYFLHDDMKNCGV   41 (42)
T ss_dssp             TTTC-CCCCSSSEEEEETTE-EEEECCTTCEECTTSSCEEC
T ss_pred             CCCCCCCcCCCCEeecCCCC-EEEeCCCCCEECCCCCeecC
Confidence            4653 568999999999877 99999999999999999974

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.6e-08  Score=63.52  Aligned_cols=39  Identities=28%  Similarity=0.644  Sum_probs=34.5

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      ++|+. +++|+|+|+.++++ ++|.||.||+|..|+++|.+
T Consensus         2 dEC~~-~~~C~~~C~n~~Gs-y~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           2 DECQD-PDTCSQLCVNLEGG-YKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             CTTTT-TTSCSSCEECSSSC-CEECCCTTEEECTTTCCEEE
T ss_pred             ccCCC-CCCCCCEeECCCCC-EEeECCCCCeECCCCCcccc
Confidence            67864 67899999999876 99999999999999999864

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=1.6e-08  Score=64.89  Aligned_cols=40  Identities=28%  Similarity=0.600  Sum_probs=31.5

Q ss_pred             CCCcCCCCC---ccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           76 NPCNIHNGG---CAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        76 npC~~~ngg---Cs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      +.|+..|++   |+|+|+.++.+ ++|+||.||+|..|+++|..
T Consensus         2 dEC~~~~~~~~~C~~~C~Nt~gs-y~C~C~~Gy~L~~d~~tC~~   44 (45)
T d1nt0a3           2 DECRTSLGDSVPCDHYCHNYLGG-YYCSCRVGYILHQNKHTCSA   44 (45)
T ss_dssp             CTTC-------CCSSEEEEETTE-EEEECCTTEEECTTSSCEEE
T ss_pred             cCCccCCCCcCCCCCEeecCCCC-EEEeCCCCCEECCCCCcccc
Confidence            567776665   99999999876 99999999999999999964

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.8e-08  Score=63.15  Aligned_cols=40  Identities=28%  Similarity=0.702  Sum_probs=35.0

Q ss_pred             CCCcCCCC---CccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           76 NPCNIHNG---GCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        76 npC~~~ng---gCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      +.|+..++   +|+|+|+.++++ |+|+|+.||.|..|+++|..
T Consensus         2 dEC~~~~~~~~~C~~~C~Nt~Gs-y~C~C~~Gy~l~~d~~tC~D   44 (45)
T d1szba2           2 DECQVAPGEAPTCDHHCHNHLGG-FYCSCRAGYVLHRNKRTCSE   44 (45)
T ss_dssp             CTTCCCTTSCCSSSSEEEEETTE-EEEECCTTEEECTTSSCEEE
T ss_pred             cCCcCCCCCCCCCCCCCccCCCC-eEEECCCCCeECCCCCCccC
Confidence            56777666   799999999887 99999999999999999964

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=5.9e-07  Score=56.79  Aligned_cols=39  Identities=23%  Similarity=0.396  Sum_probs=35.2

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccc
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      +.|+..+++|+++|+.++++ |+|.|+.||+|..++++|+
T Consensus         4 dEC~~~~~~c~~~C~Nt~G~-y~C~C~~Gy~l~~d~~~C~   42 (43)
T d1uzka1           4 NECLDPTTCISGNCVNTPGS-YICDCPPDFELNPTRVGCV   42 (43)
T ss_dssp             CGGGSTTSSBTSEEEEETTE-EEEECCTTCEECTTSSBEE
T ss_pred             cccCCCCcCcCCEeECCCCC-EEEecCCCCEECCCCCccc
Confidence            67887788899999999887 9999999999999998885

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.8e-06  Score=57.08  Aligned_cols=34  Identities=26%  Similarity=0.578  Sum_probs=30.7

Q ss_pred             CCCccccccCCCCCcCeecCCCCcccccCCccccc
Q psy954           82 NGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        82 nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      +.+|+|+|+.++++ |+|.||.||+|..|+++|.+
T Consensus        19 ~~~c~~~C~Nt~Gs-Y~C~C~~Gy~l~~d~~tC~~   52 (53)
T d1apqa_          19 QPQCQHLCHNYVGG-YFCSCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             SCTTSSEEEEETTE-EEEECSTTCEECTTSSCEEC
T ss_pred             CCCccCEeEcCCCC-eEeECCCCCeECCCCCceec
Confidence            45689999999987 99999999999999999975

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=9e-06  Score=71.47  Aligned_cols=65  Identities=12%  Similarity=0.198  Sum_probs=54.0

Q ss_pred             ccCCCceEEEE-cCCCCceEEEEE--CCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceeecc
Q psy954            2 RIATGASMVLI-SATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVYSA   68 (337)
Q Consensus         2 ~~dG~~R~vl~-~~~~~Pf~Lav~--~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~~~   68 (337)
                      .+||+++++|+ ..+..|.|||+-  ++.|||+|..+++|++++. +|..+++++..+ ..|.+|.++..
T Consensus       152 ~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~-~g~~~~~v~~~~-~~P~~lav~~~  219 (263)
T d1npea_         152 HMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP-AQPGRRKVLEGL-QYPFAVTSYGK  219 (263)
T ss_dssp             ETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TEEEEEEEEECC-CSEEEEEEETT
T ss_pred             cCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEEC-CCCCeEEEECCC-CCcEEEEEECC
Confidence            58999999998 678999999997  8999999999999999987 455666666665 56889988743

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.8e-06  Score=54.15  Aligned_cols=39  Identities=21%  Similarity=0.530  Sum_probs=33.0

Q ss_pred             CCCcCCCCCccc-cccCCCCCcCeecCCCCcccccCCcccc
Q psy954           76 NPCNIHNGGCAQ-SCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        76 npC~~~nggCs~-lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      +.|+..++.|.+ +|+.++++ |+|.|+.||+|..++++|+
T Consensus         3 dEC~~~~~~C~~~~C~Nt~Gs-y~C~C~~Gy~l~~d~~~Cv   42 (42)
T d1lmja2           3 DECQRDPLLCRGGVCHNTEGS-YRCECPPGHQLSPNISACI   42 (42)
T ss_dssp             CHHHHCSSTTTTSEEEEETTE-EEEESCTTSCCCSSSCCCC
T ss_pred             cccCCCCCCCCCCEeECCCCC-eEEeCCCCCeECcCCCccC
Confidence            456666777877 99999887 9999999999999998884

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=3.2e-06  Score=53.26  Aligned_cols=39  Identities=23%  Similarity=0.558  Sum_probs=32.7

Q ss_pred             CCCcCCCCCcc-ccccCCCCCcCeecCCCCcccccCCcccc
Q psy954           76 NPCNIHNGGCA-QSCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        76 npC~~~nggCs-~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      +.|+..++.|. |.|+.++++ |+|.|+.||.|..++++|.
T Consensus         4 nEC~~~~~~c~~~~C~Nt~Gs-y~C~C~~Gy~l~~~~~~Ce   43 (43)
T d1uzka2           4 DECQELPGLCQGGKCINTFGS-FQCRCPTGYYLNEDTRVCD   43 (43)
T ss_dssp             CHHHHCGGGGBTSEEEECSSC-EEEECCTTCCBCTTTCBBC
T ss_pred             ccccCCCCCcCCCEEECCCCC-eEeECCCCCeECcCCCccC
Confidence            45666666775 799999988 9999999999999998883

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=7e-05  Score=65.59  Aligned_cols=66  Identities=18%  Similarity=0.366  Sum_probs=52.3

Q ss_pred             CccCCCceEEEE-cCCCCceEEEEE--CCEEEEEeCCCCceEEEecccCCceEEEeeccc--CCCccceeec
Q psy954            1 MRIATGASMVLI-SATIYPFAITVH--RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLE--DSPRDIHVYS   67 (337)
Q Consensus         1 ~~~dG~~R~vl~-~~~~~Pf~Lav~--~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~--~~p~gI~v~~   67 (337)
                      +.+||+++++|+ .++..|.|||+-  ++.|||+|.....|++++. +|..+.++.....  ..|.+|.++.
T Consensus       148 ~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~-dG~~~~~~~~~~~~~~~p~~lav~~  218 (266)
T d1ijqa1         148 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV-NGGNRKTILEDEKRLAHPFSLAVFE  218 (266)
T ss_dssp             EETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET-TSCSCEEEEECTTTTSSEEEEEEET
T ss_pred             eccCCCceecccccccceeeEEEeeccccEEEEecCCcCEEEEEEC-CCCCEEEEEeCCCcccccEEEEEEC
Confidence            368999999998 678999999997  8999999999999999997 5555555544321  3477888875

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=1.3e-05  Score=49.32  Aligned_cols=37  Identities=32%  Similarity=0.749  Sum_probs=29.4

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCCCCcccc-cCCccc
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLV-NEGRMC  114 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~-~~~~~C  114 (337)
                      +.|+. +++|+|+|+.++++ |+|.||.||.|. .++++|
T Consensus         3 dEC~~-~~~C~~~C~N~~Gs-y~C~C~~Gy~l~g~~~~~C   40 (40)
T d1dx5i3           3 DECEN-GGFCSGVCHNLPGT-FECICGPDSALAGQIGTDC   40 (40)
T ss_dssp             CHHHH-CSSCSSEEEECSSS-EEEEECSSSSCEEEESCCC
T ss_pred             cccCC-CcCccCEeeCCCCC-eEeECCCCCeeCCCCCCCC
Confidence            34543 57899999999888 999999999996 456554

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=4.5e-05  Score=47.76  Aligned_cols=37  Identities=22%  Similarity=0.434  Sum_probs=31.2

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccc
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      +.|+..+..|.++|+.++++ |+|.|+.||+|  ++++|+
T Consensus         6 dEC~~~~~~~~~~C~Nt~Gs-y~C~C~~Gy~~--~g~~C~   42 (43)
T d1emoa1           6 DECKEPDVCKHGQCINTDGS-YRCECPFGYIL--AGNECV   42 (43)
T ss_dssp             CSSSSTTSCSSSCCCCCSSC-CCCCCCTTEEE--SSSCEE
T ss_pred             eccCCcCCCCCCEeECCCCC-eEeECCCCccc--CCCccc
Confidence            77887788899999999887 99999999998  455664

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=6.3e-05  Score=47.23  Aligned_cols=39  Identities=31%  Similarity=0.662  Sum_probs=31.8

Q ss_pred             CCCcCCCCCccc-cccCCCCCcCeecCCCCcccc-cCCcccc
Q psy954           76 NPCNIHNGGCAQ-SCHPGPNGTAECKCDESTKLV-NEGRMCV  115 (337)
Q Consensus        76 npC~~~nggCs~-lCl~~~~~~~~C~Cp~g~~L~-~~~~~C~  115 (337)
                      +.|+..+..|.+ .|+.++++ |+|.||.||.+. .++++|+
T Consensus         4 dEC~~~~~~C~~~~C~Nt~Gs-y~C~C~~Gy~~~~~~g~~Cv   44 (44)
T d1lmja1           4 DECRISPDLCGRGQCVNTPGD-FECKCDEGYESGFMMMKNCM   44 (44)
T ss_dssp             CTTTTCSSTTTTSCEEEETTE-EEECCCSSEEECTTTSSSEE
T ss_pred             cccCCCCCCCCCCEeEcCCCC-eEEeCCCCCccCCCCCCcCC
Confidence            567776777776 89999887 999999999986 4777774

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.82  E-value=0.0039  Score=53.21  Aligned_cols=64  Identities=16%  Similarity=0.169  Sum_probs=43.8

Q ss_pred             ccCCCceEEEE-cCCCCceEEEEE-CCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceee
Q psy954            2 RIATGASMVLI-SATIYPFAITVH-RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVY   66 (337)
Q Consensus         2 ~~dG~~R~vl~-~~~~~Pf~Lav~-~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~   66 (337)
                      +.+|..+.++. ..+.+|.+|++. .+.|||+|+..+.|+++....+ ...++.......|.+|.+-
T Consensus       167 d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~-~~~~~~~~~~~~P~~i~~d  232 (260)
T d1rwia_         167 EAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPFTGLNTPLAVAVD  232 (260)
T ss_dssp             CTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS-CCEECCCCSCCCEEEEEEC
T ss_pred             ccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC-eEEEEccCCCCCeEEEEEe
Confidence            34566666654 567999999997 5699999999999999887543 3333322222457777663

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.011  Score=34.60  Aligned_cols=29  Identities=28%  Similarity=0.771  Sum_probs=21.9

Q ss_pred             ccCCCCCcCCCCCccccccCCCCCcCeecCCCCcc
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTK  106 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~  106 (337)
                      ++.++||.  |||   .|+...++ ++|.||.||.
T Consensus         2 ~C~~~PC~--ngg---~C~~~~~~-y~C~C~~g~~   30 (35)
T d2vj3a3           2 ECASSPCL--HNG---RCLDKINE-FQCECPTGFT   30 (35)
T ss_dssp             TTTTCCST--TTC---EEEECSSC-EEEECCTTEE
T ss_pred             CCCCCCCC--CCc---EEECCCCC-eEEECCCCCC
Confidence            35568988  555   67776665 9999999986

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.73  E-value=0.023  Score=34.03  Aligned_cols=33  Identities=36%  Similarity=0.946  Sum_probs=23.3

Q ss_pred             cCCCCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccc
Q psy954           73 CSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        73 ~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      +.++||.  |||   .|+...++ ++|.||.||.    |+.|.
T Consensus         3 C~~~PC~--ngg---~C~~~~~~-y~C~C~~G~~----G~~Ce   35 (39)
T d1xkba1           3 CETSPCQ--NQG---KCKDGLGE-YTCTCLEGFE----GKNCE   35 (39)
T ss_dssp             TTTCCCC--SSC---EECCCSSS-CCEECCTTEE----TTTTC
T ss_pred             CCCCCCC--CCc---EEECCCCC-EEEECCCCCC----cCcCe
Confidence            4568988  555   46665555 9999999986    55553

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.022  Score=34.11  Aligned_cols=29  Identities=28%  Similarity=0.708  Sum_probs=21.4

Q ss_pred             ccCCCCCcCCCCCccccccCCCCCcCeecCCCCcc
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTK  106 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~  106 (337)
                      .+.++||.  |||   .|+...++ ++|.||.||.
T Consensus         3 ~C~~~PC~--n~g---~C~~~~~~-y~C~C~~G~~   31 (39)
T d2vj3a2           3 ECVSNPCQ--NDA---TCLDQIGE-FQCICMPGYE   31 (39)
T ss_dssp             TTTTCCCC--SSC---EEEECSSC-EEEECCTTEE
T ss_pred             CCcCCCCC--CCC---EEECCCCC-EEEeCCCCCc
Confidence            35568887  444   56766565 9999999986

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.70  E-value=0.029  Score=33.60  Aligned_cols=29  Identities=45%  Similarity=0.920  Sum_probs=21.3

Q ss_pred             ccCCCCCcCCCCCccccccCCCCCcCeecCCCCcc
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTK  106 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~  106 (337)
                      ++.++||.  |||   .|+...++ ++|.||.||.
T Consensus         5 ~C~~~PC~--ngg---~C~~~~~~-y~C~C~~g~~   33 (39)
T d1edmb_           5 QCESNPCL--NGG---SCKDDINS-YECWCPFGFE   33 (39)
T ss_dssp             TTTTCCCC--TTC---EEEEETTE-EEEECCTTCC
T ss_pred             cCCCCCCC--CCc---EEEcCCCC-EEEECCCCCC
Confidence            56678888  554   46665555 9999999985

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.41  E-value=0.05  Score=33.00  Aligned_cols=26  Identities=31%  Similarity=0.772  Sum_probs=19.2

Q ss_pred             CCCCcCCCCCccccccCCCCCcCeecCCCCcc
Q psy954           75 VNPCNIHNGGCAQSCHPGPNGTAECKCDESTK  106 (337)
Q Consensus        75 ~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~  106 (337)
                      ++||.  |++   .|+.++++ |+|.||.||.
T Consensus        10 ~~pC~--n~g---~C~n~~g~-y~C~C~~G~~   35 (42)
T d2vj3a1          10 ANPCE--HAG---KCINTLGS-FECQCLQGYT   35 (42)
T ss_dssp             SCSSS--TTC---EEEECSSS-EEEECCTTEE
T ss_pred             CCCCC--CCc---EeECCCCC-EEeECCCCCc
Confidence            47886  333   56676666 9999999996

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.34  E-value=0.043  Score=33.15  Aligned_cols=33  Identities=33%  Similarity=0.726  Sum_probs=23.5

Q ss_pred             CCCCCcCCCCCccccccCCC-CCcCeecCCCCcccccCCcccc
Q psy954           74 SVNPCNIHNGGCAQSCHPGP-NGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        74 ~~npC~~~nggCs~lCl~~~-~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      .++||+  |||   .|+... .+.++|.||.||.    |+.|.
T Consensus         2 ~~nPC~--ngG---~C~~~~~~~~y~C~C~~g~~----G~~Ce   35 (41)
T d1tpga1           2 SEPRCF--NGG---TCQQALYFSDFVCQCPEGFA----GKSCE   35 (41)
T ss_dssp             SSCCSC--TTC---EEEEESSSSCEEEECCTTCB----SSSCC
T ss_pred             cCCCCC--CCC---EEecCCCCCCeEECCCCCCC----CCCcC
Confidence            468998  666   566654 3458999999986    56664

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.21  E-value=0.027  Score=33.35  Aligned_cols=29  Identities=34%  Similarity=0.834  Sum_probs=21.1

Q ss_pred             ccCCCCCcCCCCCccccccCCCCCcCeecCCCCcc
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTK  106 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~  106 (337)
                      ++.++||.  |||   .|+...++ ++|.||.||.
T Consensus         4 ~C~~~PC~--ngg---~C~~~~~~-y~C~C~~g~~   32 (37)
T d2c4fl1           4 QCASSPCQ--NGG---SCKDQLQS-YICFCLPAFE   32 (37)
T ss_dssp             GGGGCCCC--TTC---EEEEETTE-EEEECCTTEE
T ss_pred             cCCCCCCC--CCC---EEECCCCC-eEEECCCCCc
Confidence            45678988  554   45655555 9999999986

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.53  E-value=0.023  Score=34.08  Aligned_cols=29  Identities=31%  Similarity=0.752  Sum_probs=21.2

Q ss_pred             ccCCCCCcCCCCCccccccCCCCCcCeecCCCCcc
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTK  106 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~  106 (337)
                      ++.++||.  |||   .|+...++ ++|.|+.||.
T Consensus         3 ~C~~~pC~--ngg---~C~~~~~~-~~C~C~~g~~   31 (39)
T d1g1ta2           3 ACTNTSCS--GHG---ECVETINN-YTCKCDPGFS   31 (39)
T ss_dssp             CCCTTGGG--GSE---EEEEETTE-EEEEECTTEE
T ss_pred             cccCCcCC--CCc---EEECCCCC-EEEeCCCCCc
Confidence            35668888  554   56665555 9999999985

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.22  E-value=0.078  Score=33.15  Aligned_cols=35  Identities=29%  Similarity=0.768  Sum_probs=25.2

Q ss_pred             ccccCCCCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccc
Q psy954           70 SQKCSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        70 ~q~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      ..++.+|||.  ||.    |+...++ ++|.|+.||.    |+.|.
T Consensus         8 ~~~C~~~PC~--nG~----C~~~~~~-y~C~C~~G~~----G~~Ce   42 (48)
T d1autl1           8 EHPCASLCCG--HGT----CIDGIGS-FSCDCRSGWE----GRFCQ   42 (48)
T ss_dssp             CCSSSSTTTT--SEE----ECCCSSC-CCEEECTTEE----STTSC
T ss_pred             CCcccCCCCC--CCE----EECCCCC-CeEeCCCCCc----CCCcc
Confidence            3467778996  565    5555555 9999999986    66665

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.72  E-value=0.037  Score=33.27  Aligned_cols=33  Identities=24%  Similarity=0.598  Sum_probs=23.5

Q ss_pred             cCCCCCcCCCCCccccccCCCCCcCeecCCCCcccccCCcccc
Q psy954           73 CSVNPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVNEGRMCV  115 (337)
Q Consensus        73 ~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~~~~~C~  115 (337)
                      +.++||.  |||   .|+...++ ++|.|+.||.    |+.|.
T Consensus         4 C~~~pC~--ngg---~C~~~~~~-y~C~C~~g~~----G~~Ce   36 (40)
T d1g1sa2           4 CQDMSCS--KQG---ECLETIGN-YTCSCYPGFY----GPECE   36 (40)
T ss_dssp             CCTTGGG--GSE---EEEECSSS-EEEEECTTEE----STTSC
T ss_pred             ccCCcCC--CCc---EEECCCCC-eEEeCCCCcc----CCCCC
Confidence            5568888  554   56666665 9999999985    45553

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.70  E-value=0.048  Score=32.93  Aligned_cols=30  Identities=30%  Similarity=0.746  Sum_probs=20.6

Q ss_pred             ccCCCCCcCCCCCccccccCCCCCcCeecCCC-Ccc
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDE-STK  106 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~-g~~  106 (337)
                      ++.++||.  |||   .|+....++++|.||. ||.
T Consensus         3 ~C~~~PC~--ngG---~C~~~~~~~y~C~C~~~gy~   33 (41)
T d1cvua2           3 PCCSNPCQ--NRG---ECMSTGFDQYKCDCTRTGFY   33 (41)
T ss_dssp             TTTTCCCC--TTC---EEEEEETTEEEEECTTSSEE
T ss_pred             cCcCCCCC--CCC---EEEECCCCCEEEeCcCCCcC
Confidence            45668888  555   5665544559999984 875

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=89.08  E-value=0.061  Score=32.63  Aligned_cols=30  Identities=23%  Similarity=0.600  Sum_probs=21.0

Q ss_pred             ccCCCCCcCCCCCccccccCCCCCcCeecCCC-Ccc
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGPNGTAECKCDE-STK  106 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~~~~~~C~Cp~-g~~  106 (337)
                      ++.++||+  |||   .|+....++++|.|+. ||.
T Consensus         4 ~C~~nPC~--ngG---~C~~~~~~~y~C~C~~~G~~   34 (42)
T d1q4ga2           4 PCCYYPCQ--HQG---ICVRFGLDRYQCDCTRTGYS   34 (42)
T ss_dssp             GGGGCCCC--TTC---EEEEETTTEEEEECTTSSEE
T ss_pred             cCcCCCCC--CCC---EeeeCCCCCEEEECCCCCcC
Confidence            45668888  655   5665544559999985 785

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.86  E-value=0.18  Score=42.19  Aligned_cols=53  Identities=21%  Similarity=0.200  Sum_probs=36.9

Q ss_pred             cCCCCceEEEEE-CCEEEEEeCCCCceEEEecccCCceEEEeecccCCCccceee
Q psy954           13 SATIYPFAITVH-RNYIYWTDLQLRGVYRAEKHTGANMIEMVKRLEDSPRDIHVY   66 (337)
Q Consensus        13 ~~~~~Pf~Lav~-~d~IYWtDw~~~~I~r~~k~~G~~~~~l~~~~~~~p~gI~v~   66 (337)
                      ..+..|.+|++. ++.||++++....|++.+.... ....+.......|.+|.+-
T Consensus       137 ~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~-~~~~~~~~~~~~p~gi~~d  190 (260)
T d1rwia_         137 TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVD  190 (260)
T ss_dssp             CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEEC
T ss_pred             cccCCcceeeecCCCCEeeeccccccccccccccc-eeeeeeccccCCCccceee
Confidence            456899999997 6689999999999999886543 3333322222557777663

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.46  E-value=0.076  Score=31.83  Aligned_cols=26  Identities=35%  Similarity=0.775  Sum_probs=21.1

Q ss_pred             cccCCCCCcCeecCCCCcccccCCccccc
Q psy954           88 SCHPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        88 lCl~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      .|+.++.+ ++|.|+.||+  .||++|++
T Consensus        14 ~C~Nt~Gs-y~C~C~~Gy~--GdG~~C~~   39 (40)
T d1gl4a2          14 ECRDYATG-FCCRCVANYT--GNGRQCVA   39 (40)
T ss_dssp             EEEECSSC-EEEEECTTEE--ECSSSEEE
T ss_pred             EeecCCCC-eEeECCCCCc--CCCCEeeC
Confidence            57888766 9999999997  46788875

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.97  E-value=0.21  Score=32.87  Aligned_cols=37  Identities=30%  Similarity=0.591  Sum_probs=24.0

Q ss_pred             cCCCCCcCCCCC-ccccc-cCCCCCcCeecCCCCcccccCCccccc
Q psy954           73 CSVNPCNIHNGG-CAQSC-HPGPNGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        73 ~~~npC~~~ngg-Cs~lC-l~~~~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      +..+||.  ||| |..+- +... ++++|.||.||.    |+.|..
T Consensus         9 c~~~~C~--NgG~C~~~~~~~~~-~~y~C~C~~gy~----G~~Ce~   47 (63)
T d1haea_           9 KEKTFCV--NGGECFMVKDLSNP-SRYLCKCQPGFT----GARCTE   47 (63)
T ss_dssp             HHHTTSC--TTCEEEEEESSSSS-CCEEEECCTTEE----STTSCE
T ss_pred             CcCCcCC--CCCEEeecccccCC-CCEEeECCCCCC----CCCcCC
Confidence            3458888  655 54332 3333 349999999996    667764

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.75  E-value=0.19  Score=29.78  Aligned_cols=32  Identities=28%  Similarity=0.650  Sum_probs=26.2

Q ss_pred             CCCcCCCCCccccccCCCCCcCeecCCCCccccc
Q psy954           76 NPCNIHNGGCAQSCHPGPNGTAECKCDESTKLVN  109 (337)
Q Consensus        76 npC~~~nggCs~lCl~~~~~~~~C~Cp~g~~L~~  109 (337)
                      .||...+  |.+-|.+...+.++|.|..||.-..
T Consensus         5 DPCf~~~--CE~qCqP~~~~~Y~CiCaeGFaP~p   36 (43)
T d1dx5i1           5 DPCFRAN--CEYQCQPLDQTSYLCVCAEGFAPIP   36 (43)
T ss_dssp             CGGGGCC--CSSEEEECSSSCEEEECCTTEEEET
T ss_pred             ccccCCC--cceeeeeCCCCcceEEeccccccCC
Confidence            6777654  9999999887779999999996544

>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.48  E-value=0.21  Score=28.11  Aligned_cols=24  Identities=33%  Similarity=0.826  Sum_probs=17.0

Q ss_pred             ccccccCCCCCcCeecCCCCcccccC
Q psy954           85 CAQSCHPGPNGTAECKCDESTKLVNE  110 (337)
Q Consensus        85 Cs~lCl~~~~~~~~C~Cp~g~~L~~~  110 (337)
                      |..-|-|.  ....|.||.||+|.++
T Consensus         8 CPAdCdP~--~p~~C~CPeGyIldeg   31 (35)
T d1dx5i2           8 CPADCDPN--TQASCECPEGYILDDG   31 (35)
T ss_dssp             EECEECTT--STTCEECCTTEEEETT
T ss_pred             CCCccCCC--CCCcccCCCceEeccc
Confidence            55555543  3347999999999874

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.72  E-value=0.39  Score=30.35  Aligned_cols=36  Identities=25%  Similarity=0.460  Sum_probs=23.3

Q ss_pred             ccCCCCCcCCCCCccccccCCC-CCcCeecCCCCcccccCCccccc
Q psy954           72 KCSVNPCNIHNGGCAQSCHPGP-NGTAECKCDESTKLVNEGRMCVA  116 (337)
Q Consensus        72 ~~~~npC~~~nggCs~lCl~~~-~~~~~C~Cp~g~~L~~~~~~C~~  116 (337)
                      ++..+||.  |||   .|+..+ ...++|.||.||.    |+.|.-
T Consensus         8 ~c~~~~C~--NgG---~C~~~~~~~~~~C~C~~gy~----G~~Ce~   44 (53)
T d3egfa_           8 SSYDGYCL--NGG---VCMHIESLDSYTCNCVIGYS----GDRCQT   44 (53)
T ss_dssp             TTSSCCSC--SSC---EEEEESSSSCEEEECCTTCC----SSSSCC
T ss_pred             CCCCCCCC--CCc---EeeccCCCCCeEeECCCCCc----CCCCcc
Confidence            45568888  544   454333 2349999999996    556653