Psyllid ID: psy9563

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190--
Protein Sequence
MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKYREMAGTDPVFVD
Secondary Structure (PSIPRED)
ccccccccccccccccEEcccEEEEcccccccccccccHHHHHHHcEEEcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEEEEEEEccccccccccccHHHHHHEEEEEcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHccccccccc
Coil and Loop (DISEMBL)
mnmkgfyslekpgefttLIDVQFVAAMaqpgggrndipsrlkRQFCifncvlpsdkaiDNIFSVIGeghynakrgfPIEVRNLVKQLIPLTRLLWKSTraqllptpakfhYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTrvfsdrftimsdkhwfddEVLNLVEQNLGVkyremagtdpvfvd
Flexible Loop (DISEMBL)
MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLgvkyremagtdpvfvd
Low Complexity Region (SEG)
MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKYREMAGTDPVFVD
Disordered region (IsUnstruct)
********LEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKYREMA********
Disordered Region (DISOPRED)
MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKYREMAGTDPVFVD
Disordered Region (DISEMBL)
MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKYREMAGTDPVFVD
Disordered Region (DISPRO)
****GFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKYREMAGTDPVFVD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKYREMAGTDPVFVD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	192	2.2.26 [Sep-21-2011]
Q8TE73	4624	Dynein heavy chain 5, axo	yes	N/A	1.0	0.041	0.592	7e-67
Q8VHE6	4621	Dynein heavy chain 5, axo	yes	N/A	1.0	0.041	0.587	3e-65
Q91XQ0	4731	Dynein heavy chain 8, axo	no	N/A	1.0	0.040	0.5	1e-56
Q96JB1	4490	Dynein heavy chain 8, axo	no	N/A	1.0	0.042	0.494	1e-55
Q39575	4485	Dynein gamma chain, flage	N/A	N/A	0.973	0.041	0.421	2e-38
Q63164	4516	Dynein heavy chain 1, axo	no	N/A	0.984	0.041	0.341	3e-27
Q9P2D7	4330	Dynein heavy chain 1, axo	no	N/A	0.906	0.040	0.355	4e-27
Q8WXX0	4024	Dynein heavy chain 7, axo	no	N/A	0.864	0.041	0.367	1e-25
Q63170	4057	Dynein heavy chain 7, axo	no	N/A	0.765	0.036	0.401	1e-24
Q9MBF8	4513	Dynein-1-beta heavy chain	N/A	N/A	0.953	0.040	0.333	5e-24

>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3

 Score =  253 bits (645), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 115/194 (59%), Positives = 145/194 (74%), Gaps = 2/194 (1%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M   GFY+LEKPGEFT+++D+QF+AAM  PGGGRNDIP RLKRQF IFNC LPS+ ++D 
Sbjct: 2680 MEQNGFYNLEKPGEFTSIVDIQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSEASVDK 2739

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IF VIG GHY  +RGF  EVR+ V +L+PLTR LW+ T+ ++LPTPAKFHYVF+LRDLSR
Sbjct: 2740 IFGVIGVGHYCTQRGFSEEVRDSVTKLVPLTRRLWQMTKIKMLPTPAKFHYVFNLRDLSR 2799

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            +WQGM+ T S VI     L+ LWKHE  RV +DRFT+ SD  WFD  +++LVE+  G + 
Sbjct: 2800 VWQGMLNTTSEVIKEPNDLLKLWKHECKRVIADRFTVSSDVTWFDKALVSLVEEEFGEEK 2859

Query: 181  REM--AGTDPVFVD 192
            + +   G D  FVD
Sbjct: 2860 KLLVDCGIDTYFVD 2873

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for structural and functional integrity of the cilia of ependymal cells lining the brain ventricles.
Homo sapiens (taxid: 9606)

>sp|Q8VHE6|DYH5_MOUSE Dynein heavy chain 5, axonemal OS=Mus musculus GN=Dnah5 PE=1 SV=2

 Score =  247 bits (631), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/194 (58%), Positives = 144/194 (74%), Gaps = 2/194 (1%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M   GFY+LEKPGEFT+++D+QF+AAM  PGGGRNDIP RLKRQF IFNC LPSD ++D 
Sbjct: 2677 MEQSGFYNLEKPGEFTSIVDIQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSDASMDK 2736

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IF VIG G+Y A+RGF  EV++ + +L+PLTR LW+ T+ ++LPTPAKFHYVF+LRDLSR
Sbjct: 2737 IFGVIGAGYYCAQRGFSEEVQDALIKLVPLTRRLWQMTKLKMLPTPAKFHYVFNLRDLSR 2796

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGM+   S VI     L+ LWKHE  RV +DRF++ SD  WFD  V++LVE+  G + 
Sbjct: 2797 IWQGMLNITSEVIKDTDELLRLWKHECKRVIADRFSMSSDVTWFDKAVVSLVEEEFGEEK 2856

Query: 181  REM--AGTDPVFVD 192
              +   G D  FVD
Sbjct: 2857 APVVDCGVDAYFVD 2870

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for structural and functional integrity of the cilia of ependymal cells lining the brain ventricles.

Mus musculus (taxid: 10090)

>sp|Q91XQ0|DYH8_MOUSE Dynein heavy chain 8, axonemal OS=Mus musculus GN=Dnahc8 PE=2 SV=2

 Score =  219 bits (558), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 96/192 (50%), Positives = 138/192 (71%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M M+G YSL+KPG+FTT++DVQ +AAM  PGGGRNDIP RLKRQF +FNC LPS+ +ID 
Sbjct: 2787 MEMEGMYSLDKPGDFTTIVDVQLIAAMIHPGGGRNDIPQRLKRQFTVFNCTLPSNTSIDK 2846

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IF +IG G+++  R F  E+ ++V  L+ ++R+LW+ T+ ++LPTP+KFHY+F+LRDLSR
Sbjct: 2847 IFGIIGCGYFDPCRKFRPEICDMVGNLVSVSRVLWQWTKVKMLPTPSKFHYIFNLRDLSR 2906

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGM+   +    S  +L+ L+KHE  RV +DRF    D+ WF+ +++  VE+N+  + 
Sbjct: 2907 IWQGMLTVKAEECSSIPILLSLFKHECNRVIADRFITPDDEQWFNSQLIRAVEENISPEV 2966

Query: 181  REMAGTDPVFVD 192
                  +P FVD
Sbjct: 2967 AANILPEPYFVD 2978

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Mus musculus (taxid: 10090)

>sp|Q96JB1|DYH8_HUMAN Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2

 Score =  215 bits (548), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 134/192 (69%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M M+G YSL+KPG+FTT++DVQ +AAM  PGGGRNDIP RLKRQF +FNC LPS+ +ID 
Sbjct: 2546 MEMEGMYSLDKPGDFTTIVDVQLIAAMIHPGGGRNDIPQRLKRQFTVFNCTLPSNASIDK 2605

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IF +IG G+++  R F  ++  ++  L+ + R+LW+ T+ ++LPTP+KFHY+F+LRDLSR
Sbjct: 2606 IFGIIGCGYFDPCRSFKPQICEMIVNLVSVGRVLWQWTKVKMLPTPSKFHYIFNLRDLSR 2665

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGM+   +    S   L+ L+KHE +RV +DRF    D+ WF+  +   VE+N+G   
Sbjct: 2666 IWQGMLTIKAEECASIPTLLSLFKHECSRVIADRFITPEDEQWFNAHLTRAVEENIGSDA 2725

Query: 181  REMAGTDPVFVD 192
                  +P FVD
Sbjct: 2726 ASCILPEPYFVD 2737

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q39575|DYHG_CHLRE Dynein gamma chain, flagellar outer arm OS=Chlamydomonas reinhardtii GN=ODA2 PE=1 SV=1

 Score =  158 bits (399), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/204 (42%), Positives = 117/204 (57%), Gaps = 17/204 (8%)

Query: 5    GFYSLEKP-GEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFS 63
            G YSLEKP G+   + DV++VAAM  PGGG+NDIP+RLKRQF IFN  LPS  AI+ IF 
Sbjct: 2519 GMYSLEKPIGDMKFITDVRYVAAMNTPGGGKNDIPNRLKRQFAIFNVPLPSVAAINGIFG 2578

Query: 64   VIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQ 123
             + EG + ++  F  EV  +  +L+PLT  LW   + ++LPTPAKFHY+F++R+LS+++Q
Sbjct: 2579 KLVEGRF-SRDVFCEEVVYVASKLVPLTITLWNRIQTKMLPTPAKFHYLFNMRELSKVFQ 2637

Query: 124  GMVGTL---------------STVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEV 168
            G++                    V   E  L+ LW HE  RVFSD+     DK+W D  V
Sbjct: 2638 GVILATRDRFNLAAGDSAVFGGNVASPEGYLLGLWIHECRRVFSDKLISYEDKNWVDKAV 2697

Query: 169  LNLVEQNLGVKYREMAGTDPVFVD 192
             +L   N      +       FVD
Sbjct: 2698 FDLCRDNFSSDLVKQVEEPIYFVD 2721

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q63164|DYH1_RAT Dynein heavy chain 1, axonemal OS=Rattus norvegicus GN=Dnah1 PE=2 SV=2

 Score =  121 bits (303), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 10/199 (5%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+  G+Y  +  G F  L+D+ FV AM  PGGGRN I  RL R F   + +   + +   
Sbjct: 2550 MDHGGWYDRKIIGAFKNLVDINFVCAMGPPGGGRNAITPRLTRHFNYLSFIEMDEVSKKR 2609

Query: 61   IFSVI---------GEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHY 111
            IFS+I         GE  Y         + ++ + L+  T  ++    +QLLPTPAK HY
Sbjct: 2610 IFSIILGCWMDGLLGEKSYREPVPGAPNIVHMTEPLVNATISIYAIITSQLLPTPAKSHY 2669

Query: 112  VFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNL 171
             F+LRDLS+++QG++      ++ +  L+ LW HE  RVF DR     D+ WFD  +L +
Sbjct: 2670 TFNLRDLSKVFQGILMAEPAKVEDKVQLLRLWYHENCRVFRDRLVNEEDRGWFDG-LLEM 2728

Query: 172  VEQNLGVKYREMAGTDPVF 190
              ++LGV + ++    P+ 
Sbjct: 2729 KMEDLGVAFNKVCPFQPIL 2747

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Rattus norvegicus (taxid: 10116)

>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4

 Score =  120 bits (302), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 96/183 (52%), Gaps = 9/183 (4%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+  G+Y  +  G F  L+D+ FV AM  PGGGRN +  RL R F   +     + +   
Sbjct: 2317 MDHGGWYDRKIIGAFKNLVDINFVCAMGPPGGGRNTVTPRLMRHFNYLSFAEMDEVSKKR 2376

Query: 61   IFSVI---------GEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHY 111
            IFS I         GE  Y  +      + +  + L+  T +++ +  +QLLPTPAK HY
Sbjct: 2377 IFSTILGNWLDGLLGEKSYRERVPGAPHIAHFTEPLVEATIMVYATITSQLLPTPAKSHY 2436

Query: 112  VFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNL 171
             F+LRDLS+++QGM+      ++ +  L+ LW HE  RVF DR     D+ WFD  +   
Sbjct: 2437 TFNLRDLSKVFQGMLMADPAKVEDQVQLLRLWYHENCRVFRDRLVNEEDRSWFDQLLKRC 2496

Query: 172  VEQ 174
            +EQ
Sbjct: 2497 MEQ 2499

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q8WXX0|DYH7_HUMAN Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 90/166 (54%)

Query: 18   LIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFP 77
            L+D+Q + AM  PGGGRN +  R  R F I      SDK++  IFS I   H      FP
Sbjct: 2083 LVDIQIMCAMGPPGGGRNPVTPRYMRHFNIITINEFSDKSMYTIFSRILTWHLEICYKFP 2142

Query: 78   IEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEK 137
             E  +L  Q++  T  L+K     LLPTPAK HY+F+LRD SR+ QG+  +     ++ +
Sbjct: 2143 DEFLDLTTQIVNGTMTLYKEAMKNLLPTPAKSHYLFNLRDFSRVIQGVCLSRPETTETTE 2202

Query: 138  VLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKYREM 183
            V+  LW HEV RV+ DR    +D+ W  + +  ++   +   + E+
Sbjct: 2203 VIKRLWVHEVLRVYYDRLLDNTDRSWLINYIQEILRNYMYEDFHEL 2248

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Homo sapiens (taxid: 9606)

>sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norvegicus GN=Dnah7 PE=2 SV=2

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/147 (40%), Positives = 82/147 (55%)

Query: 18   LIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFP 77
            L+D+Q + AM  PGGGRN I  R  R F I      SDK++  IFS I   H      FP
Sbjct: 2116 LVDIQIMCAMGPPGGGRNPITPRYMRHFNIITINEFSDKSMFTIFSRILTWHLRTCYKFP 2175

Query: 78   IEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEK 137
             +  +L  Q++  T  L+K     LLPTPAK HY+F+LRD SR+ QG+  +     ++++
Sbjct: 2176 DDFLDLTTQIVNGTMTLYKDAMKNLLPTPAKSHYLFNLRDFSRVIQGVCLSRPETAENKE 2235

Query: 138  VLMLLWKHEVTRVFSDRFTIMSDKHWF 164
             +  LW HEV RV+ DR    +D+ W 
Sbjct: 2236 AIKRLWVHEVLRVYYDRLLDNADRSWL 2262

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Rattus norvegicus (taxid: 10116)

>sp|Q9MBF8|DYH1B_CHLRE Dynein-1-beta heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC10 PE=1 SV=1

 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 9/192 (4%)

Query: 5    GFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSV 64
            GF+      E   + D+Q +AAMA PGGGRN    R++  F   N   P+D  +  IF  
Sbjct: 2590 GFWYDRAKCEVKHIKDMQLLAAMAPPGGGRNAFSQRVQACFATLNVTAPNDNQLKRIFGT 2649

Query: 65   IGEGHYNAKRG-FPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQ 123
            I     NAK   F  EV+ L + +   T  ++++   +LLPTP+K HY+F+ RDL++I Q
Sbjct: 2650 I----LNAKLADFDDEVKPLSEPITMATIGIYRAVSKELLPTPSKSHYLFNTRDLAKIIQ 2705

Query: 124  GMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHW----FDDEVLNLVEQNLGVK 179
            GM+       +S++ ++ LW HE  R+ +DR    +DK W     D+++      + G  
Sbjct: 2706 GMMQATKAFYNSKEEVLQLWCHECMRIIADRMWDHADKEWLVRQLDEKLGTTFSTSFGTL 2765

Query: 180  YREMAGTDPVFV 191
            +     T P FV
Sbjct: 2766 FEAYNETVPPFV 2777

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for assembly of the I1 inner arm complex and its targeting to the appropriate axoneme location. Also required for phototaxis.

Chlamydomonas reinhardtii (taxid: 3055)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
242023054	4696	dynein heavy chain, cytosolic, putative	1.0	0.040	0.75	1e-85
270003052	3409	hypothetical protein TcasGA2_TC000076 [T	1.0	0.056	0.760	1e-85
189235485	4686	PREDICTED: similar to dynein heavy chain	1.0	0.040	0.760	1e-85
340714875	4149	PREDICTED: LOW QUALITY PROTEIN: dynein h	1.0	0.046	0.739	1e-84
383865160	2675	PREDICTED: dynein heavy chain 5, axonema	1.0	0.071	0.729	4e-84
350414937	4617	PREDICTED: dynein heavy chain 5, axonema	1.0	0.041	0.739	6e-84
332027529	4602	Dynein heavy chain 5, axonemal [Acromyrm	1.0	0.041	0.75	2e-83
345497345	4607	PREDICTED: LOW QUALITY PROTEIN: dynein h	1.0	0.041	0.729	3e-83
307167408	4612	Dynein heavy chain 5, axonemal [Camponot	1.0	0.041	0.75	6e-83
328706382	4633	PREDICTED: dynein heavy chain 5, axonema	1.0	0.041	0.739	2e-82

>gi|242023054|ref|XP_002431951.1| dynein heavy chain, cytosolic, putative [Pediculus humanus corporis] gi|212517302|gb|EEB19213.1| dynein heavy chain, cytosolic, putative [Pediculus humanus corporis]

 Score =  321 bits (822), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 170/192 (88%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+MKGFYSLEKPGEFT+++DVQF+AAM+QPGGGRNDIPSRLKRQFC+FN  +PSD +ID 
Sbjct: 2753 MDMKGFYSLEKPGEFTSIVDVQFLAAMSQPGGGRNDIPSRLKRQFCMFNVSIPSDGSIDK 2812

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IF +IGEGHYN+KRGF +EVRNLVK+L+PLTR LW+ TRA LLPTPAKFHYVFSLR+LSR
Sbjct: 2813 IFKLIGEGHYNSKRGFSLEVRNLVKKLVPLTRELWQETRAFLLPTPAKFHYVFSLRELSR 2872

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            +WQGMVGTLSTV DSEK+L++LWKHE  RVFSDRFTI  DK+WFD  +  ++E  LGV+Y
Sbjct: 2873 VWQGMVGTLSTVFDSEKILLVLWKHECCRVFSDRFTISKDKNWFDSMMTKIIETKLGVEY 2932

Query: 181  REMAGTDPVFVD 192
            REMA  +PVFVD
Sbjct: 2933 REMADINPVFVD 2944

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003052|gb|EEZ99499.1| hypothetical protein TcasGA2_TC000076 [Tribolium castaneum]

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 166/192 (86%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+M GFYSLEKPGEFTT++DVQFVAAM QPGGGRNDIPSRLKRQFC+FNC LP D +ID 
Sbjct: 2713 MDMGGFYSLEKPGEFTTIVDVQFVAAMGQPGGGRNDIPSRLKRQFCLFNCPLPMDASIDK 2772

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IF VI +GHYN KRGF +EVRNLVK+L+PLTR LWK+TRA+LLPTPAKFHYVFSLRDLSR
Sbjct: 2773 IFGVIAQGHYNVKRGFTLEVRNLVKKLVPLTRFLWKNTRAKLLPTPAKFHYVFSLRDLSR 2832

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGM+GTLSTVI+SE  +M+LWKHE TRVFSDRFTI  DK WFD E+L+LVE+ LG  +
Sbjct: 2833 IWQGMIGTLSTVIESEGCMMVLWKHECTRVFSDRFTIEEDKKWFDAELLDLVERELGPAF 2892

Query: 181  REMAGTDPVFVD 192
            R     +PVFVD
Sbjct: 2893 RTKTEPNPVFVD 2904

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189235485|ref|XP_967934.2| PREDICTED: similar to dynein heavy chain [Tribolium castaneum]

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 146/192 (76%), Positives = 166/192 (86%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+M GFYSLEKPGEFTT++DVQFVAAM QPGGGRNDIPSRLKRQFC+FNC LP D +ID 
Sbjct: 2743 MDMGGFYSLEKPGEFTTIVDVQFVAAMGQPGGGRNDIPSRLKRQFCLFNCPLPMDASIDK 2802

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IF VI +GHYN KRGF +EVRNLVK+L+PLTR LWK+TRA+LLPTPAKFHYVFSLRDLSR
Sbjct: 2803 IFGVIAQGHYNVKRGFTLEVRNLVKKLVPLTRFLWKNTRAKLLPTPAKFHYVFSLRDLSR 2862

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGM+GTLSTVI+SE  +M+LWKHE TRVFSDRFTI  DK WFD E+L+LVE+ LG  +
Sbjct: 2863 IWQGMIGTLSTVIESEGCMMVLWKHECTRVFSDRFTIEEDKKWFDAELLDLVERELGPAF 2922

Query: 181  REMAGTDPVFVD 192
            R     +PVFVD
Sbjct: 2923 RTKTEPNPVFVD 2934

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714875|ref|XP_003395948.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 5, axonemal-like [Bombus terrestris]

 Score =  317 bits (812), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 165/192 (85%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+MKGFYSLEKPG+FT+++DV F+AAM QPGGGRNDIP RLKRQFCIFNC LP++ +ID 
Sbjct: 2231 MDMKGFYSLEKPGDFTSIVDVTFLAAMCQPGGGRNDIPLRLKRQFCIFNCTLPNEASIDR 2290

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IFSV+GEGHYNAKRGF  EVRNLV +++PLTR LW+ TRA LLPTPAKFHY F+LRDLSR
Sbjct: 2291 IFSVLGEGHYNAKRGFSTEVRNLVNKMVPLTRTLWERTRANLLPTPAKFHYTFNLRDLSR 2350

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGM+GTLSTVID E VLMLLWKHE +RVFSDRFTI +DK WFD+E+L +V++ LG  Y
Sbjct: 2351 IWQGMLGTLSTVIDKESVLMLLWKHECSRVFSDRFTIQADKDWFDEEILKVVDEMLGKDY 2410

Query: 181  REMAGTDPVFVD 192
              M   DPVFVD
Sbjct: 2411 TNMLDQDPVFVD 2422

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865160|ref|XP_003708043.1| PREDICTED: dynein heavy chain 5, axonemal-like, partial [Megachile rotundata]

 Score =  315 bits (808), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 140/192 (72%), Positives = 164/192 (85%)

Query: 1   MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
           M+MKGFYSLEKPG+FT+++D+ F+AAM QPGGGRNDIPSRLKRQFCIFNC LP   +ID 
Sbjct: 732 MDMKGFYSLEKPGDFTSIVDMTFLAAMCQPGGGRNDIPSRLKRQFCIFNCTLPDKASIDR 791

Query: 61  IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
           IFSV+GEGHYN KRGF +E+RNLVK+++PLTR+LW+ TR  LLPTPAKFHYVF+LRDLSR
Sbjct: 792 IFSVLGEGHYNTKRGFSVEIRNLVKKMVPLTRILWERTRNNLLPTPAKFHYVFNLRDLSR 851

Query: 121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
           IWQGMVGTLSTVID E VLMLLWKHE +RVFSDRFTI +DK WF DE++ +V + LG +Y
Sbjct: 852 IWQGMVGTLSTVIDKENVLMLLWKHECSRVFSDRFTIQTDKEWFGDEIVRVVNEMLGERY 911

Query: 181 REMAGTDPVFVD 192
             M   DP FVD
Sbjct: 912 VNMLDQDPAFVD 923

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414937|ref|XP_003490478.1| PREDICTED: dynein heavy chain 5, axonemal-like [Bombus impatiens]

 Score =  315 bits (807), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 163/192 (84%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+MKGFYSLEKPG+FT+++DV F+AAM QPGGGRNDIP RLKRQFCIFNC LP++ +ID 
Sbjct: 2699 MDMKGFYSLEKPGDFTSIVDVTFLAAMCQPGGGRNDIPLRLKRQFCIFNCTLPNEASIDR 2758

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IFSV+GEGHYNAKRGF  EVRNLV +++PLTR LW+ TRA LLPTPAKFHY F+LRDLSR
Sbjct: 2759 IFSVLGEGHYNAKRGFSAEVRNLVNKMVPLTRTLWERTRANLLPTPAKFHYTFNLRDLSR 2818

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGM+GTLSTVID E VLMLLWKHE +RVFSDRFTI +DK WFD E+L +V + LG  Y
Sbjct: 2819 IWQGMLGTLSTVIDKESVLMLLWKHECSRVFSDRFTIQADKDWFDAEILKVVNEILGEDY 2878

Query: 181  REMAGTDPVFVD 192
              M   DPVFVD
Sbjct: 2879 TNMLDQDPVFVD 2890

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027529|gb|EGI67606.1| Dynein heavy chain 5, axonemal [Acromyrmex echinatior]

 Score =  313 bits (803), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 161/192 (83%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+MKGFYSLEKPG+FT ++DV F+AAM QPGGGRNDIPSRLKRQFCIFNC LP + +ID 
Sbjct: 2659 MDMKGFYSLEKPGDFTAIVDVTFLAAMCQPGGGRNDIPSRLKRQFCIFNCTLPDNASIDR 2718

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IFS +GEGHYN KRGF  EVR LVK++IPLTR+LW+ TRA+LLPTPAKFHYVFSLRDLSR
Sbjct: 2719 IFSALGEGHYNIKRGFSQEVRQLVKKMIPLTRILWEKTRAKLLPTPAKFHYVFSLRDLSR 2778

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGMVGTLSTVID E VLMLLWKHE TRVFSDR TI SDK WFD  ++++V   LG KY
Sbjct: 2779 IWQGMVGTLSTVIDKESVLMLLWKHECTRVFSDRLTIQSDKDWFDKGLISVVADILGEKY 2838

Query: 181  REMAGTDPVFVD 192
              M   DP FVD
Sbjct: 2839 VNMLNQDPTFVD 2850

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345497345|ref|XP_001602948.2| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 5, axonemal-like [Nasonia vitripennis]

 Score =  312 bits (800), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 140/192 (72%), Positives = 165/192 (85%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+MKGFYSLEKPG+FTT++DV F+ AM QPGGGRNDIPSRLKRQFCIFNC LP D +ID 
Sbjct: 2693 MDMKGFYSLEKPGDFTTIVDVTFMGAMGQPGGGRNDIPSRLKRQFCIFNCTLPDDASIDR 2752

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IFSV+GEGHYN+KRGF  EVR LVK+++ LTR+LW++TRA+LLPTPAKFHYVF+LRDLSR
Sbjct: 2753 IFSVLGEGHYNSKRGFSPEVRALVKKMVGLTRILWQNTRAKLLPTPAKFHYVFNLRDLSR 2812

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGM+GTLSTVID E+VLMLLW+HE  RVFSDRFT+ SDK WF+ E++ +V +NLG  Y
Sbjct: 2813 IWQGMLGTLSTVIDKEQVLMLLWRHECERVFSDRFTLQSDKEWFNKELMTIVTENLGESY 2872

Query: 181  REMAGTDPVFVD 192
             EM    P FVD
Sbjct: 2873 IEMIEEKPAFVD 2884

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167408|gb|EFN60993.1| Dynein heavy chain 5, axonemal [Camponotus floridanus]

 Score =  311 bits (798), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 144/192 (75%), Positives = 161/192 (83%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+MKGFYSLEKPG+F  ++DV F+ AM QPGGGRNDIPSRLKRQFCIFNC LP + AID 
Sbjct: 2698 MDMKGFYSLEKPGDFIAIVDVIFLGAMCQPGGGRNDIPSRLKRQFCIFNCTLPDNVAIDR 2757

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IFSV+GEGHYN KRGF  EVR LVK++IPLTR+LW+ TR +LLPTPAKFHYVFSLRDLSR
Sbjct: 2758 IFSVLGEGHYNLKRGFSPEVRQLVKKMIPLTRILWEKTRMKLLPTPAKFHYVFSLRDLSR 2817

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGMVGTLSTVID E VLMLLWKHE TRVFSDR TI SDK+WFD E++++V   LG KY
Sbjct: 2818 IWQGMVGTLSTVIDKESVLMLLWKHECTRVFSDRLTIQSDKNWFDQELIHVVADLLGEKY 2877

Query: 181  REMAGTDPVFVD 192
              M   DP FVD
Sbjct: 2878 VNMLDQDPAFVD 2889

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328706382|ref|XP_001943595.2| PREDICTED: dynein heavy chain 5, axonemal-like [Acyrthosiphon pisum]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 142/192 (73%), Positives = 159/192 (82%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
            M+MKGFYSLEKPGEF TL D+ FV AM  PGGGRNDIPSRLKRQFCIFNC +PSD +ID 
Sbjct: 2690 MDMKGFYSLEKPGEFYTLNDILFVGAMVHPGGGRNDIPSRLKRQFCIFNCTMPSDASIDK 2749

Query: 61   IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
            IF V+GE HYNAKRGF +E+RNLVK+L P+TR LW STR  LLPTPAKFHYVFSLRDLSR
Sbjct: 2750 IFRVVGETHYNAKRGFSVEIRNLVKKLTPITRELWHSTRMTLLPTPAKFHYVFSLRDLSR 2809

Query: 121  IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
            IWQGMVGTLSTVIDS K+L++LW+HE TRVFSDRFT +SDK WFD E+  +VE  LG +Y
Sbjct: 2810 IWQGMVGTLSTVIDSAKILIMLWRHETTRVFSDRFTSLSDKSWFDQELNKVVESRLGTQY 2869

Query: 181  REMAGTDPVFVD 192
              M   DP FVD
Sbjct: 2870 IAMLDADPPFVD 2881

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	192
FB|FBgn0037726	4719	CG9492 [Drosophila melanogaste	1.0	0.040	0.718	5.1e-71
ZFIN|ZDB-GENE-110411-177	1974	dnah5 "dynein, axonemal, heavy	1.0	0.097	0.592	4.3e-60
UNIPROTKB|J9P6H1	3391	DNAH5 "Uncharacterized protein	1.0	0.056	0.603	1.2e-59
UNIPROTKB|F1P6C6	4623	DNAH5 "Uncharacterized protein	1.0	0.041	0.603	1.9e-59
UNIPROTKB|F1P6D8	4624	DNAH5 "Uncharacterized protein	1.0	0.041	0.603	1.9e-59
UNIPROTKB|Q8TE73	4624	DNAH5 "Dynein heavy chain 5, a	1.0	0.041	0.592	3.9e-59
UNIPROTKB|F1LNS7	3870	Dnah5 "Protein Dnah5" [Rattus	1.0	0.049	0.597	1.7e-58
UNIPROTKB|E1BMG2	4624	DNAH5 "Uncharacterized protein	1.0	0.041	0.587	5.7e-58
MGI|MGI:107718	4621	Dnahc5 "dynein, axonemal, heav	1.0	0.041	0.587	1.9e-57
UNIPROTKB|F1NMK9	4582	DNAH5 "Uncharacterized protein	1.0	0.041	0.590	2.4e-57

FB|FBgn0037726 CG9492 [Drosophila melanogaster (taxid:7227)]

 Score = 738 (264.8 bits), Expect = 5.1e-71, P = 5.1e-71
 Identities = 138/192 (71%), Positives = 159/192 (82%)

Query:     1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
             M+MKGFYSLEKPG+FTT++DVQ+VAAM  PGGGRNDIPSRLKRQFC+FNC +P + +ID 
Sbjct:  2749 MDMKGFYSLEKPGDFTTIVDVQYVAAMGLPGGGRNDIPSRLKRQFCVFNCNIPDNDSIDK 2808

Query:    61 IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
             IF VIGEGHYNAKRGF  E+R+LVK+LI +TR LW+ TR +LLPTPAKFHYVFSLRDLSR
Sbjct:  2809 IFRVIGEGHYNAKRGFVPEIRSLVKKLIVVTRHLWQRTREKLLPTPAKFHYVFSLRDLSR 2868

Query:   121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
             IWQGMVGTLSTVI SE VLM LWKHE TRVF+DRFT   DK WF  E+  LV + LG  +
Sbjct:  2869 IWQGMVGTLSTVITSESVLMALWKHECTRVFADRFTTFQDKEWFGSELACLVREELGDSH 2928

Query:   181 REMAGTDPVFVD 192
              +M   +PVFVD
Sbjct:  2929 SQMILPNPVFVD 2940

GO:0003774 "motor activity" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=ISS;IDA

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0030286 "dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=IEA;ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IMP

ZFIN|ZDB-GENE-110411-177 dnah5 "dynein, axonemal, heavy chain 5" [Danio rerio (taxid:7955)]

 Score = 630 (226.8 bits), Expect = 4.3e-60, P = 4.3e-60
 Identities = 115/194 (59%), Positives = 144/194 (74%)

Query:     1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
             M   GF++LEKPGEFT ++D+QF+AAM  PGGGRND+P RLKRQF IFNC LPS+ +ID 
Sbjct:    29 MEQNGFFNLEKPGEFTNIVDIQFLAAMIHPGGGRNDVPQRLKRQFSIFNCTLPSNASIDK 88

Query:    61 IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
             IF VIG GHY + RGF  EVRN V +L+PLTR LW+ T+ ++LPTPA FHY+F+LRDLSR
Sbjct:    89 IFGVIGTGHYCSHRGFSEEVRNTVGRLVPLTRRLWQMTKVKMLPTPANFHYIFNLRDLSR 148

Query:   121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
             IWQGM+G  + VI + ++L+ LWKHE  RV +DRFT   D  WFD  +  LVE+ LG + 
Sbjct:   149 IWQGMLGVTAEVISTPQLLLQLWKHECKRVIADRFTAPEDVAWFDSTLAKLVEEQLGEEE 208

Query:   181 REMA--GTDPVFVD 192
             RE+   G D  FVD
Sbjct:   209 REVVDLGVDSYFVD 222

GO:0030286 "dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|J9P6H1 DNAH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 629 (226.5 bits), Expect = 1.2e-59, P = 1.2e-59
 Identities = 117/194 (60%), Positives = 147/194 (75%)

Query:     1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
             M   GFY+LEKPGEFT+++DVQF+AAM  PGGGRNDIP RLKRQF IFNC LPSD ++D 
Sbjct:  2682 MEQNGFYNLEKPGEFTSIVDVQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSDASMDK 2741

Query:    61 IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
             IF VIG G+Y ++RGF  EVR+ V +LIPLTR LW+ T+ ++LPTPAKFHY+F+LRDLSR
Sbjct:  2742 IFGVIGRGYYCSQRGFSEEVRDSVMKLIPLTRRLWQMTKIKMLPTPAKFHYIFNLRDLSR 2801

Query:   121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
             IWQGM+ T S VI     L+ LWKHE  RV +DRFT+ +D  WFD  +++LVE+  G + 
Sbjct:  2802 IWQGMLNTTSEVIKDSDELLRLWKHECKRVIADRFTVPNDVIWFDKALVSLVEEEFGEEK 2861

Query:   181 REMA--GTDPVFVD 192
             + +   GTD  FVD
Sbjct:  2862 KLLVDCGTDAYFVD 2875

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|F1P6C6 DNAH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 629 (226.5 bits), Expect = 1.9e-59, P = 1.9e-59
 Identities = 117/194 (60%), Positives = 147/194 (75%)

Query:     1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
             M   GFY+LEKPGEFT+++DVQF+AAM  PGGGRNDIP RLKRQF IFNC LPSD ++D 
Sbjct:  2679 MEQNGFYNLEKPGEFTSIVDVQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSDASMDK 2738

Query:    61 IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
             IF VIG G+Y ++RGF  EVR+ V +LIPLTR LW+ T+ ++LPTPAKFHY+F+LRDLSR
Sbjct:  2739 IFGVIGRGYYCSQRGFSEEVRDSVMKLIPLTRRLWQMTKIKMLPTPAKFHYIFNLRDLSR 2798

Query:   121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
             IWQGM+ T S VI     L+ LWKHE  RV +DRFT+ +D  WFD  +++LVE+  G + 
Sbjct:  2799 IWQGMLNTTSEVIKDSDELLRLWKHECKRVIADRFTVPNDVIWFDKALVSLVEEEFGEEK 2858

Query:   181 REMA--GTDPVFVD 192
             + +   GTD  FVD
Sbjct:  2859 KLLVDCGTDAYFVD 2872

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

UNIPROTKB|F1P6D8 DNAH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 629 (226.5 bits), Expect = 1.9e-59, P = 1.9e-59
 Identities = 117/194 (60%), Positives = 147/194 (75%)

Query:     1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
             M   GFY+LEKPGEFT+++DVQF+AAM  PGGGRNDIP RLKRQF IFNC LPSD ++D 
Sbjct:  2680 MEQNGFYNLEKPGEFTSIVDVQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSDASMDK 2739

Query:    61 IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
             IF VIG G+Y ++RGF  EVR+ V +LIPLTR LW+ T+ ++LPTPAKFHY+F+LRDLSR
Sbjct:  2740 IFGVIGRGYYCSQRGFSEEVRDSVMKLIPLTRRLWQMTKIKMLPTPAKFHYIFNLRDLSR 2799

Query:   121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
             IWQGM+ T S VI     L+ LWKHE  RV +DRFT+ +D  WFD  +++LVE+  G + 
Sbjct:  2800 IWQGMLNTTSEVIKDSDELLRLWKHECKRVIADRFTVPNDVIWFDKALVSLVEEEFGEEK 2859

Query:   181 REMA--GTDPVFVD 192
             + +   GTD  FVD
Sbjct:  2860 KLLVDCGTDAYFVD 2873

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|Q8TE73 DNAH5 "Dynein heavy chain 5, axonemal" [Homo sapiens (taxid:9606)]

 Score = 626 (225.4 bits), Expect = 3.9e-59, P = 3.9e-59
 Identities = 115/194 (59%), Positives = 145/194 (74%)

Query:     1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
             M   GFY+LEKPGEFT+++D+QF+AAM  PGGGRNDIP RLKRQF IFNC LPS+ ++D 
Sbjct:  2680 MEQNGFYNLEKPGEFTSIVDIQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSEASVDK 2739

Query:    61 IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
             IF VIG GHY  +RGF  EVR+ V +L+PLTR LW+ T+ ++LPTPAKFHYVF+LRDLSR
Sbjct:  2740 IFGVIGVGHYCTQRGFSEEVRDSVTKLVPLTRRLWQMTKIKMLPTPAKFHYVFNLRDLSR 2799

Query:   121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
             +WQGM+ T S VI     L+ LWKHE  RV +DRFT+ SD  WFD  +++LVE+  G + 
Sbjct:  2800 VWQGMLNTTSEVIKEPNDLLKLWKHECKRVIADRFTVSSDVTWFDKALVSLVEEEFGEEK 2859

Query:   181 REMA--GTDPVFVD 192
             + +   G D  FVD
Sbjct:  2860 KLLVDCGIDTYFVD 2873

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=NAS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1LNS7 Dnah5 "Protein Dnah5" [Rattus norvegicus (taxid:10116)]

 Score = 619 (223.0 bits), Expect = 1.7e-58, P = 1.7e-58
 Identities = 116/194 (59%), Positives = 145/194 (74%)

Query:     1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
             M   GFY+LEKPGEFT+++D+QF+AAM  PGGGRNDIP RLKRQF IFNC LPSD ++D 
Sbjct:  1926 MEQNGFYNLEKPGEFTSIVDIQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSDASMDK 1985

Query:    61 IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
             IF VIGEG+Y A+RGF  EV++ V +L+PLTR LW+ T+ ++LPTPAKFHYVF+LRDLSR
Sbjct:  1986 IFGVIGEGYYCAQRGFSKEVQDAVIKLVPLTRRLWQMTKLKMLPTPAKFHYVFNLRDLSR 2045

Query:   121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
             IWQGM+   S VI     L+ LWKHE  RV +DRF++ SD  WFD  V++LVE+  G + 
Sbjct:  2046 IWQGMLNITSEVIKDTDELLRLWKHECKRVIADRFSMSSDVTWFDKAVVSLVEEEFGEEK 2105

Query:   181 REMA--GTDPVFVD 192
               +   G D  FVD
Sbjct:  2106 TPVVDCGVDAYFVD 2119

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|E1BMG2 DNAH5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 615 (221.5 bits), Expect = 5.7e-58, P = 5.7e-58
 Identities = 114/194 (58%), Positives = 143/194 (73%)

Query:     1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
             +   GFY+LEKPGEFT+++D+QF+AAM  PGGGRNDIP RLKRQF IFNC LPSD ++D 
Sbjct:  2680 LEQNGFYNLEKPGEFTSIVDIQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSDASVDK 2739

Query:    61 IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
             IF VIG G+Y  +RGF  EVR+ V +L+PLTR LW+ T+ ++LPTPAKFHYVF+LRDLSR
Sbjct:  2740 IFGVIGVGYYCTQRGFSEEVRDWVTKLVPLTRRLWQMTKIKMLPTPAKFHYVFNLRDLSR 2799

Query:   121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
             IWQGM+ T   VI     L+ LWKHE  RV +DRFT   D  WFD  +++LVE+  G + 
Sbjct:  2800 IWQGMLNTTPEVIKEPDELLRLWKHECKRVIADRFTASDDVTWFDKTLVSLVEEEFGEEK 2859

Query:   181 REMA--GTDPVFVD 192
             + +   GTD  FVD
Sbjct:  2860 KLLVDCGTDTYFVD 2873

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

MGI|MGI:107718 Dnahc5 "dynein, axonemal, heavy chain 5" [Mus musculus (taxid:10090)]

 Score = 610 (219.8 bits), Expect = 1.9e-57, P = 1.9e-57
 Identities = 114/194 (58%), Positives = 144/194 (74%)

Query:     1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
             M   GFY+LEKPGEFT+++D+QF+AAM  PGGGRNDIP RLKRQF IFNC LPSD ++D 
Sbjct:  2677 MEQSGFYNLEKPGEFTSIVDIQFLAAMIHPGGGRNDIPQRLKRQFSIFNCTLPSDASMDK 2736

Query:    61 IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
             IF VIG G+Y A+RGF  EV++ + +L+PLTR LW+ T+ ++LPTPAKFHYVF+LRDLSR
Sbjct:  2737 IFGVIGAGYYCAQRGFSEEVQDALIKLVPLTRRLWQMTKLKMLPTPAKFHYVFNLRDLSR 2796

Query:   121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
             IWQGM+   S VI     L+ LWKHE  RV +DRF++ SD  WFD  V++LVE+  G + 
Sbjct:  2797 IWQGMLNITSEVIKDTDELLRLWKHECKRVIADRFSMSSDVTWFDKAVVSLVEEEFGEEK 2856

Query:   181 REMA--GTDPVFVD 192
               +   G D  FVD
Sbjct:  2857 APVVDCGVDAYFVD 2870

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IMP

GO:0003774 "motor activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IMP

GO:0005874 "microtubule" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0008152 "metabolic process" evidence=IMP

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|F1NMK9 DNAH5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 609 (219.4 bits), Expect = 2.4e-57, P = 2.4e-57
 Identities = 114/193 (59%), Positives = 138/193 (71%)

Query:     1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDN 60
             M   G Y+LEKPGEFT ++D+QF+AAM  PGGGRNDIP RLKRQF +FNC LPS+ +ID 
Sbjct:  2637 MEQNGLYNLEKPGEFTNIVDIQFLAAMIHPGGGRNDIPQRLKRQFSVFNCTLPSNSSIDK 2696

Query:    61 IFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSR 120
             IF VIGEGHY +KRGF   V+  V +L+PLTR LW+ T+ ++LPTPAKFHYVF+LRDLSR
Sbjct:  2697 IFGVIGEGHYCSKRGFSEPVKETVAKLVPLTRRLWQVTKLKMLPTPAKFHYVFNLRDLSR 2756

Query:   121 IWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGVKY 180
             IWQGM+ T S VI   KVL+ LWKHE   V +DRFT + D  WFD  V  L+E+    K 
Sbjct:  2757 IWQGMLNTTSEVISEPKVLIKLWKHECKSVIADRFTNLEDVKWFDTTVAKLIEEEFEGKT 2816

Query:   181 REM-AGTDPVFVD 192
               +    D  FVD
Sbjct:  2817 TSLNPEIDAFFVD 2829

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005858 "axonemal dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8TE73	DYH5_HUMAN	No assigned EC number	0.5927	1.0	0.0415	yes	N/A
Q8VHE6	DYH5_MOUSE	No assigned EC number	0.5876	1.0	0.0415	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	192
pfam12775	272	pfam12775, AAA_7, P-loop containing dynein motor r	3e-22
COG5245	3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	7e-09

>gnl|CDD|193251 pfam12775, AAA_7, P-loop containing dynein motor region D3

 Score = 90.4 bits (224), Expect = 3e-22
 Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 2/127 (1%)

Query: 20  DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIE 79
           + Q+V+ M  P  G   I SRL+R FC+F    P   A+  I+++I   H  A       
Sbjct: 148 NCQYVSCM-NPTAGSFTINSRLQRHFCVFALSFPGQDALSTIYNIILTQHL-ALGSVSAA 205

Query: 80  VRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVL 139
           ++     L+     L +      LPT  KFHYVF+LRDLS I+QG++ +    + S   L
Sbjct: 206 LQKSSPPLVDAALALHQKIATTFLPTAIKFHYVFNLRDLSNIFQGLLFSSVECLKSPWDL 265

Query: 140 MLLWKHE 146
           + LW HE
Sbjct: 266 IRLWLHE 272

the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D3 and is an ATP binding site. Length = 272

>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]

 Score = 54.2 bits (130), Expect = 7e-09
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 33   GRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTR 92
            GR     R  R+     C  P   ++ NI+  +  G Y     F       +   + L  
Sbjct: 1625 GRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYL 1684

Query: 93   LLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKV-LMLLWKHEVTRVF 151
                 T+  L     + +Y +  R+L+R  + + G   T ID+  V L++ W  E  R  
Sbjct: 1685 SSKDKTKFFL-----QMNYGYKPRELTRSLRAIFGYAETRIDTPDVSLIIDWYCEAIREK 1739

Query: 152  SDRFTIMSDKHWFDDEVLNLVEQNLG 177
             DR     +      ++ +   + + 
Sbjct: 1740 IDRLVQQKESSTSRQDLYDFGLRAIR 1765

Length = 3164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	192
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	100.0
KOG3595|consensus	1395		100.0
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	99.93
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	97.98
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	97.89
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.07
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.41
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	93.46
PHA02244	383	ATPase-like protein	92.55
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	86.22

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=100.00  E-value=2e-44  Score=302.04  Aligned_cols=143  Identities=43%  Similarity=0.748  Sum_probs=127.7

Q ss_pred             CcccceecCCCCCCeeeecceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHH
Q psy9563           1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEV   80 (192)
Q Consensus         1 l~~~g~Yd~~~~~~~~~i~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i   80 (192)
                      |++|||||++ .++|+.|+||++||||+| ++||++||+||+|||+++++++|++++|.+||++++++++.. .+|.+++
T Consensus       130 i~~~g~yd~~-~~~~~~i~~i~~vaa~~p-~~Gr~~is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~l~~-~~f~~~v  206 (272)
T PF12775_consen  130 IDYGGFYDRK-KLEWKSIEDIQFVAAMNP-TGGRNPISPRFLRHFNILNIPYPSDESLNTIFSSILQSHLKN-GGFPEDV  206 (272)
T ss_dssp             HHCSEEECTT-TTEEEEECSEEEEEEESS-TTT--SHHHHHHTTEEEEE----TCCHHHHHHHHHHHHHTCH-TTSSGGG
T ss_pred             HHhcCcccCC-CcEEEEEeeeEEEEecCC-CCCCCCCChHHhhheEEEEecCCChHHHHHHHHHHHhhhccc-CCCChHH
Confidence            5799999985 579999999999999997 568999999999999999999999999999999999999953 4688889


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhhhcccccccCChHHHHHHHHHH
Q psy9563          81 RNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHE  146 (192)
Q Consensus        81 ~~~~~~lv~ati~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~~~~~~~~l~rlw~hE  146 (192)
                      +.+++++++||+++|++++++|+|||.++||+||||||+||+|||+++.++.+.+...++|||.||
T Consensus       207 ~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsrv~qGil~~~~~~~~~~~~l~rLW~HE  272 (272)
T PF12775_consen  207 QKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSRVFQGILLASPESIKTKESLLRLWVHE  272 (272)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHHHHHHHHHHHCTSSS-SHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHHHHHHHHhcChhhcCCHHHheEeecCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999

>KOG3595|consensus

Probab=100.00  E-value=2e-36  Score=297.64  Aligned_cols=184  Identities=35%  Similarity=0.635  Sum_probs=170.9

Q ss_pred             CcccceecCCCCCCeeeecceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHH
Q psy9563           1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEV   80 (192)
Q Consensus         1 l~~~g~Yd~~~~~~~~~i~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i   80 (192)
                      ++++||||+.+ .+|+.|+||++++||+||+|||+++++||+|||.+++++.|+.+++.+||+.++.+|+.    +...+
T Consensus       222 ~e~~g~~~~~~-~~~~~i~~i~~~~a~~~~~~gr~~i~~r~~r~f~~~~~~~~~~~sl~~if~~~~~~~~~----~~~~~  296 (1395)
T KOG3595|consen  222 LEHGGFYDRKK-SEWVEIENVQLVGAMNPPGGGRNDITERFLRHFLIVSLNYPSQESLTQIFNTILTGHLR----FAPAF  296 (1395)
T ss_pred             HHhceeecccc-cceeEEeeeEEEeecCCCCCccCcccHHHHHHeeeEeeCCCChhhHHHHHHHHHhcccC----ccHHH
Confidence            47999999976 89999999999999999999999999999999999999999999999999999999983    66777


Q ss_pred             HHHHHhHHHHHHHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhhhcccccccCChHHHHHHHHHHHHHHHHhhcCChhh
Q psy9563          81 RNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSD  160 (192)
Q Consensus        81 ~~~~~~lv~ati~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLv~~~d  160 (192)
                      ......++++|+.+|...+.+|.|||.++||+|||||++||++|+..+.+....+...++++|.||+.|||.|||++.+|
T Consensus       297 ~~~~~~i~~~~~~~~~~~~~~~~~t~~~~hyv~~lrd~~r~~~~i~~~~~~~~~~~~~l~~~~~~e~~rv~~drlv~~~~  376 (1395)
T KOG3595|consen  297 RTSIEPIVNASVDFYPKVQENFLPTPSKSHYVFNLRDLSRVVQGILLAVSEALLTLEDLIRLWVHEAIRVFADRLVDDED  376 (1395)
T ss_pred             HHhHHHHHHHHHHHHHHHHHhcCCCCCcceeeechhhhhhheeehcccCcHhhccHHHHHHHHHHHHHHhhhhhcccHHH
Confidence            66799999999999999999999999999999999999999999999997778899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcchhhhhcCCCCCccC
Q psy9563         161 KHWFDDEVLNLVEQNLGVKYREMAGTDPVFVD  192 (192)
Q Consensus       161 ~~~f~~~l~~~~~~~f~~~~~~~~~~~~~f~d  192 (192)
                      ++||++.+..++.+.|+...   ...+.+|||
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  405 (1395)
T KOG3595|consen  377 RQWFDKKLQEVLLKLFEADS---LQMPLLYGD  405 (1395)
T ss_pred             HHHHHHHHHHHHHHHhhhhh---hcCCceeee
Confidence            99999999999999998765   334455553

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=99.93  E-value=1.7e-26  Score=219.76  Aligned_cols=172  Identities=19%  Similarity=0.275  Sum_probs=154.8

Q ss_pred             CcccceecCCCCCCeeeecceEEEEEeeCCC-CCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHH
Q psy9563           1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPG-GGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIE   79 (192)
Q Consensus         1 l~~~g~Yd~~~~~~~~~i~~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~   79 (192)
                      ++++|||..- ..+|++|.+|.++||||||+ .||.+.+.||+|+-.++++.+|+..+|.+||..++.+-+.    ..++
T Consensus      1593 ~e~QGfw~s~-~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~v~vf~~ype~~SL~~Iyea~l~~s~l----~~~e 1667 (3164)
T COG5245        1593 VERQGFWSSI-AVSWVTICGIILYGACNPGTDEGRVKYYERFIRKPVFVFCCYPELASLRNIYEAVLMGSYL----CFDE 1667 (3164)
T ss_pred             HHhcccccch-hhhHhhhcceEEEccCCCCCCcccCccHHHHhcCceEEEecCcchhhHHHHHHHHHHHHHH----hhHH
Confidence            4789999864 36899999999999999998 5999999999999999999999999999999999987663    4567


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhhhccccccc-CChHHHHHHHHHHHHHHHHhhcCCh
Q psy9563          80 VRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVI-DSEKVLMLLWKHEVTRVFSDRFTIM  158 (192)
Q Consensus        80 i~~~~~~lv~ati~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~~~-~~~~~l~rlw~hE~~Rvf~DRLv~~  158 (192)
                      .+.+...+++|++++|...++++. +-...||.|+||||+||+.|+..+..... ++...++++|+||++|++.||||..
T Consensus      1668 f~~~se~~~~aSv~ly~~~k~~~k-~~lq~~y~y~pReLtR~lr~i~~yaeT~~~t~~~slI~~wy~ea~r~~~dRLV~q 1746 (3164)
T COG5245        1668 FNRLSEETMSASVELYLSSKDKTK-FFLQMNYGYKPRELTRSLRAIFGYAETRIDTPDVSLIIDWYCEAIREKIDRLVQQ 1746 (3164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-hhcccccccChHHHHHHHHHHHhHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999886 55788999999999999999998776543 3456899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhcc
Q psy9563         159 SDKHWFDDEVLNLVEQNLGV  178 (192)
Q Consensus       159 ~d~~~f~~~l~~~~~~~f~~  178 (192)
                      ++..|+++.+.++..+.++.
T Consensus      1747 kE~st~~q~ly~~~~~~~~e 1766 (3164)
T COG5245        1747 KESSTSRQDLYDFGLRAIRE 1766 (3164)
T ss_pred             HhcchHHHHHHHHHHHhhhh
Confidence            99999999999999999984

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=97.98  E-value=6.8e-05  Score=75.42  Aligned_cols=143  Identities=14%  Similarity=0.101  Sum_probs=108.5

Q ss_pred             CeeeecceEEEEEeeCC--CCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhHHHHH
Q psy9563          14 EFTTLIDVQFVAAMAQP--GGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLT   91 (192)
Q Consensus        14 ~~~~i~~i~~vaa~~p~--~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~~~~lv~at   91 (192)
                      .+.-=.|..+.||-||.  ||||.-+|..|+.+|+++.++.-..+++..|-..+..+       ..++   ..-+++..+
T Consensus      1649 ~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~yp~-------v~~d---~~~kiik~m 1718 (4600)
T COG5271        1649 TFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLTTDDITHIANKMYPQ-------VNED---WRLKIIKFM 1718 (4600)
T ss_pred             eeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccccchHHHHHHhhCCc-------cChH---HHHHHHHHH
Confidence            34445588999999984  68999999999999999999999999999887665421       3333   345678888


Q ss_pred             HHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhhhcccccccCChHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHH
Q psy9563          92 RLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNL  171 (192)
Q Consensus        92 i~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLv~~~d~~~f~~~l~~~  171 (192)
                      -.+-.+|++...-...-+-+.||+||--||.+-|-.+..-..-++..++..-+--       |+-+-+||.+-..++.++
T Consensus      1719 s~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~llNq~~~~edvd~~dfid~~V~~-------r~rtv~dr~rt~~l~~ev 1791 (4600)
T COG5271        1719 SRLQDNIEKDISFGSFGSPWEFNLRDTLRWLILLNQVGTLEDVDTSDFIDESVVR-------RMRTVEDRVRTCELFKEV 1791 (4600)
T ss_pred             HHHHHhhhhhhcccCCCCCeEEehHHHHHHHHHhhccCccccCCHHHHHHHHHHH-------HhhhHhhhhHHHHHHHHH
Confidence            8888999988777777888999999999999998888765455555555443322       344566777777766666


Q ss_pred             HH
Q psy9563         172 VE  173 (192)
Q Consensus       172 ~~  173 (192)
                      +.
T Consensus      1792 fg 1793 (4600)
T COG5271        1792 FG 1793 (4600)
T ss_pred             hc
Confidence            65

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=97.89  E-value=7e-05  Score=61.62  Aligned_cols=89  Identities=25%  Similarity=0.352  Sum_probs=55.5

Q ss_pred             cceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhHHHHHHHHHHHH
Q psy9563          19 IDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKST   98 (192)
Q Consensus        19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~~~~lv~ati~ly~~i   98 (192)
                      .+..+..+|||...||..+|+-|.+.|+.+.+..|+.+.+.   ..+|.+     .+|.+     ++.++.-...+|+..
T Consensus       133 ~~~~iFiT~np~y~gr~~LP~nLk~lFRpvam~~PD~~~I~---ei~L~s-----~GF~~-----a~~La~kl~~l~~l~  199 (231)
T PF12774_consen  133 PNCGIFITMNPGYAGRSELPENLKALFRPVAMMVPDLSLIA---EILLLS-----QGFKD-----AKSLAKKLVSLFQLC  199 (231)
T ss_dssp             TT-EEEEEE-B-CCCC--S-HHHCTTEEEEE--S--HHHHH---HHHHHC-----CCTSS-----HHHHHHHHHHHHHHH
T ss_pred             cceeEEEeeccccCCcccCCHhHHHHhheeEEeCCCHHHHH---HHHHHH-----cCchh-----HHHHHHHHHHHHHHH
Confidence            47889999998778999999999999999999999865443   333332     36753     345566677788777


Q ss_pred             HhhcCCCCCCcceEeehhhHHHHhh
Q psy9563          99 RAQLLPTPAKFHYVFSLRDLSRIWQ  123 (192)
Q Consensus        99 ~~~~~ptp~~~HY~Fnlrdl~r~~~  123 (192)
                      .+.+.   ...||.|.||-|..|+.
T Consensus       200 ~~~lS---~q~hydfgLRalk~vl~  221 (231)
T PF12774_consen  200 KEQLS---KQDHYDFGLRALKSVLR  221 (231)
T ss_dssp             HHCS----SSTT---SHHHHHHHHH
T ss_pred             HHhhc---cCccccccHHHHHHHHH
Confidence            66664   46799999999998875

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.07  E-value=0.01  Score=51.24  Aligned_cols=140  Identities=12%  Similarity=0.074  Sum_probs=95.3

Q ss_pred             Ceeeec-ceEEEEEeeCCC--------CCCCCCccccccceeE-EEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHH
Q psy9563          14 EFTTLI-DVQFVAAMAQPG--------GGRNDIPSRLKRQFCI-FNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNL   83 (192)
Q Consensus        14 ~~~~i~-~i~~vaa~~p~~--------~gr~~i~~Rl~r~f~~-~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~   83 (192)
                      +..... +..++||+||.+        .|.+.+++-++.+|.+ +.++||+.++-..|.......       ...   ..
T Consensus       171 ~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~-------~~~---~~  240 (327)
T TIGR01650       171 RVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKG-------FDD---TE  240 (327)
T ss_pred             eEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccC-------CCc---cc
Confidence            344344 789999999965        3788999999999985 589999999988887654221       111   01


Q ss_pred             HHhHHHHHHHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhhhcccccccCChHHHHHHHHHHHHHHHHhhcCChhhHHH
Q psy9563          84 VKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHW  163 (192)
Q Consensus        84 ~~~lv~ati~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLv~~~d~~~  163 (192)
                      .+.++..++++-..+++.+.  ........|+|.+-+|.+.......    +       ..|=-.+.|.+|. ++++|..
T Consensus       241 ~~~i~~~mV~la~~tR~~~~--~~~i~~~~SpR~li~w~~~~~~f~~----~-------~~~a~~~~~~n~~-~~~er~~  306 (327)
T TIGR01650       241 GKDIINAMVRVADMTRNAFI--NGDISTVMSPRTVITWAENAEIFDH----D-------IALAFRLTFLNKC-DELERPT  306 (327)
T ss_pred             hHHHHHHHHHHHHHHHhhhc--cCCccccccHHHHHHHHHHHHhhCc----c-------HHHHHHHHHHhcC-CHHHHHH
Confidence            34566777777777777552  2356678999999999987664421    1       1233456788884 7778776


Q ss_pred             HHHHHHHHHHhhhcchhh
Q psy9563         164 FDDEVLNLVEQNLGVKYR  181 (192)
Q Consensus       164 f~~~l~~~~~~~f~~~~~  181 (192)
                      ..+    ..+..||.+..
T Consensus       307 ~~e----~~q~~f~~~~~  320 (327)
T TIGR01650       307 VAE----FFQRAFGEDLP  320 (327)
T ss_pred             HHH----HHHHHcCCCCc
Confidence            554    66677776543

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.41  E-value=0.019  Score=47.87  Aligned_cols=89  Identities=11%  Similarity=0.009  Sum_probs=66.7

Q ss_pred             ceEEEEEeeCCC-CCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhHHHHHHHHHHHH
Q psy9563          20 DVQFVAAMAQPG-GGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKST   98 (192)
Q Consensus        20 ~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~~~~lv~ati~ly~~i   98 (192)
                      +..+|+|+||+. .|...+++-|.+.|..+.+++|+.++...|....    +    +..       +.+++..++++..+
T Consensus       151 ~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~----~----~~~-------~~~~~~iv~~~~~~  215 (262)
T TIGR02640       151 EFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAK----T----DVA-------EDSAATIVRLVREF  215 (262)
T ss_pred             CCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHh----h----CCC-------HHHHHHHHHHHHHH
Confidence            788999999875 6888889999999999999999999988887653    2    122       34567788888888


Q ss_pred             HhhcCCCCCCcceEeehhhHHHHhhhhhccc
Q psy9563          99 RAQLLPTPAKFHYVFSLRDLSRIWQGMVGTL  129 (192)
Q Consensus        99 ~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~  129 (192)
                      ++.      ..++..++|-.-.|.+.+....
T Consensus       216 R~~------~~~~~~~~r~~i~~~~~~~~~~  240 (262)
T TIGR02640       216 RAS------GDEITSGLRASLMIAEVATQQD  240 (262)
T ss_pred             Hhh------CCccCCcHHHHHHHHHHHHHcC
Confidence            731      2345557887777777666543

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=93.46  E-value=0.11  Score=53.69  Aligned_cols=91  Identities=14%  Similarity=0.208  Sum_probs=61.8

Q ss_pred             ceEEEEEeeCCC--CCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhHHHHHHHHHHH
Q psy9563          20 DVQFVAAMAQPG--GGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKS   97 (192)
Q Consensus        20 ~i~~vaa~~p~~--~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~~~~lv~ati~ly~~   97 (192)
                      +..+.|+-||||  |||.-+|.-|-.+|-=++.+.-..++|..|...-    -    +.       +++-+.-++++|..
T Consensus       999 ~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ILh~r----c----~i-------apSyakKiVeVyr~ 1063 (4600)
T COG5271         999 NFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEEILHGR----C----EI-------APSYAKKIVEVYRG 1063 (4600)
T ss_pred             CeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHHHHhcc----C----cc-------CHHHHHHHHHHHHH
Confidence            788999999999  6999999888888888888888888888776321    1    12       33445667778876


Q ss_pred             HHhhcCCC--CCCcceEeehhhHHHHhhhh
Q psy9563          98 TRAQLLPT--PAKFHYVFSLRDLSRIWQGM  125 (192)
Q Consensus        98 i~~~~~pt--p~~~HY~Fnlrdl~r~~~gl  125 (192)
                      ++..-..+  -..-.-.-+||||.||.-..
T Consensus      1064 Ls~rRs~~rifeqknsfaTLRDLFrWa~R~ 1093 (4600)
T COG5271        1064 LSSRRSINRIFEQKNSFATLRDLFRWAGRI 1093 (4600)
T ss_pred             hhhhhhHHHHHHhhhhHHHHHHHHHHhccc
Confidence            65432111  11112234899999997544

>PHA02244 ATPase-like protein

Probab=92.55  E-value=0.57  Score=41.36  Aligned_cols=81  Identities=17%  Similarity=0.057  Sum_probs=56.6

Q ss_pred             cceEEEEEeeCCC-C------CCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhHHHHH
Q psy9563          19 IDVQFVAAMAQPG-G------GRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLT   91 (192)
Q Consensus        19 ~~i~~vaa~~p~~-~------gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~~~~lv~at   91 (192)
                      .+..+|||+||++ |      |++.+++-++.+|.++.+++|+..+.. |-. .                      ...+
T Consensus       220 ~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~~E~~-i~~-~----------------------~~~l  275 (383)
T PHA02244        220 EDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEFDYDEKIEHL-ISN-G----------------------DEDL  275 (383)
T ss_pred             CCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeCCCCcHHHHH-Hhh-h----------------------HHHH
Confidence            5899999999975 2      788999999999999999999842221 110 0                      1233


Q ss_pred             HHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhh
Q psy9563          92 RLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGM  125 (192)
Q Consensus        92 i~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl  125 (192)
                      +++-..++..+.  ...--+.||+|++-+|.+++
T Consensus       276 v~~a~~lR~~~~--~~~l~~~~StR~li~~a~~~  307 (383)
T PHA02244        276 VNFVALLRHEMA--EKGLDHVFSMRAIIHGKKFD  307 (383)
T ss_pred             HHHHHHHHHHHh--cCCCCccccHHHHHHHHHhh
Confidence            344444444331  24567889999999999873

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=86.22  E-value=2.9  Score=39.48  Aligned_cols=47  Identities=21%  Similarity=0.236  Sum_probs=35.7

Q ss_pred             ecceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563          18 LIDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEG   68 (192)
Q Consensus        18 i~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~   68 (192)
                      -+++.+|||+|.|.    .|+++++|  .| +.+.++.|+.++-..|+..+++.
T Consensus       288 ~~~vivIaaTN~p~----~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~  337 (644)
T PRK10733        288 NEGIIVIAATNRPD----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR  337 (644)
T ss_pred             CCCeeEEEecCChh----hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence            45789999999875    55666664  34 56789999999999998777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	192
4ai6_A	2695	Dynein Motor Domain - Adp Complex Length = 2695		3e-08
3qmz_A	2486	Crystal Structure Of The Cytoplasmic Dynein Heavy C		4e-08
3vkh_A	3367	X-Ray Structure Of A Functional Full-Length Dynein		7e-07
3vkg_A	3245	X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn		7e-07

>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 8/178 (4%)
Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGG-GRNDIPSRLKRQFCIFNCVLPSDKAID 59
            M  +GF+   +  ++ T+  +  V A   P   GR  +  R  R   I     PS K++ 
Sbjct: 1366 MEKQGFWKTPE-NKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLS 1424
Query: 60   NIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLS 119
             I+ +    +Y A      E R+  +     +  L+   +A+   T  + HY+FS R+L+
Sbjct: 1425 QIYEI----YYKAIFKLVPEFRSYTEPFARASVHLYNECKARY-STGLQSHYLFSPRELT 1479
Query: 120  RIWQGMVGTLST-VIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNL 176
            R+ +G+   ++T    + + L+ LW +E  R+F+DR   + +K+ F+  +   V++ L
Sbjct: 1480 RLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYL 1537

>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 8/178 (4%)
Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGG-GRNDIPSRLKRQFCIFNCVLPSDKAID 59
            M  +GF+   +  ++ T+  +  V A   P   GR  +  R  R   I     PS K++ 
Sbjct: 1147 MEKQGFWKTPE-NKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLS 1205
Query: 60   NIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLS 119
             I+ +    +Y A      E R+  +     +  L+   +A+   T  + HY+FS R+L+
Sbjct: 1206 QIYEI----YYKAIFKLVPEFRSYTEPFARASVHLYNECKARY-STGLQSHYLFSPRELT 1260
Query: 120  RIWQGMVGTLST-VIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNL 176
            R+ +G+   ++T    + + L+ LW +E  R+F+DR   + +K+ F+  +   V++ L
Sbjct: 1261 RLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYL 1318

>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 21   VQFVAAMAQP-GGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYN-AKRGFPI 78
            +QFV A   P   GR  +  R  R   I     PS  ++  I+     G +N A      
Sbjct: 1423 IQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIY-----GTFNRALMKLLP 1477
Query: 79   EVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSE-K 137
             +R+    L       +  ++ +  P   + HY++S R+LSR  + ++  + T+     +
Sbjct: 1478 NLRSFADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQTMDGCTLE 1536
Query: 138  VLMLLWKHEVTRVFSDRFTIMSDKHWFDDEV 168
             L+ LW HE  R+F DR     +K W D ++
Sbjct: 1537 GLVRLWAHEALRLFQDRLVETEEKEWTDKKI 1567

>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 9/151 (5%)
Query: 21   VQFVAAMAQP-GGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYN-AKRGFPI 78
            +QFV A   P   GR  +  R  R   I     PS  ++  I+     G +N A      
Sbjct: 1423 IQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIY-----GTFNRALMKLLP 1477
Query: 79   EVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSE-K 137
             +R+    L       +  ++ +  P   + HY++S R+LSR  + ++  + T+     +
Sbjct: 1478 NLRSFADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQTMDGCTLE 1536
Query: 138  VLMLLWKHEVTRVFSDRFTIMSDKHWFDDEV 168
             L+ LW HE  R+F DR     +K W D ++
Sbjct: 1537 GLVRLWAHEALRLFQDRLVETEEKEWTDKKI 1567

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	192
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-59
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	1e-57
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  198 bits (504), Expect = 4e-59
 Identities = 38/194 (19%), Positives = 74/194 (38%), Gaps = 8/194 (4%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQP-GGGRNDIPSRLKRQFCIFNCVLPSDKAID 59
            +   GF+       +  L  +QFV A   P   GR  +  R  R   I     PS  ++ 
Sbjct: 1404 VEKGGFWRTSD-HTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLT 1462

Query: 60   NIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLS 119
             I+                 +R+    L       +  ++ +  P   + HY++S R+LS
Sbjct: 1463 QIYGTFNRALM----KLLPNLRSFADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELS 1517

Query: 120  RIWQGMVGTLSTVIDSEKVLML-LWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGV 178
            R  + ++  + T+       ++ LW HE  R+F DR     +K W D ++  +  ++   
Sbjct: 1518 RWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKIDEVALKHFPS 1577

Query: 179  KYREMAGTDPVFVD 192
               +      ++ +
Sbjct: 1578 VNLDALKRPILYSN 1591

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  194 bits (494), Expect = 1e-57
 Identities = 42/195 (21%), Positives = 85/195 (43%), Gaps = 9/195 (4%)

Query: 1    MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPGG-GRNDIPSRLKRQFCIFNCVLPSDKAID 59
            M  +GF+   +  ++ T+  +  V A   P   GR  +  R  R   I     PS K++ 
Sbjct: 1366 MEKQGFWKTPE-NKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLS 1424

Query: 60   NIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLS 119
             I+ +  +           E R+  +     +  L+   +A+   T  + HY+FS R+L+
Sbjct: 1425 QIYEIYYKAI----FKLVPEFRSYTEPFARASVHLYNECKARY-STGLQSHYLFSPRELT 1479

Query: 120  RIWQGMV-GTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLVEQNLGV 178
            R+ +G+     +    + + L+ LW +E  R+F+DR   + +K+ F+  +   V++ L  
Sbjct: 1480 RLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYETVDKYLPN 1539

Query: 179  KYREMAGTDP-VFVD 192
            +      +   +F  
Sbjct: 1540 QDLGNISSTSLLFSG 1554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 5e-04
 Identities = 39/210 (18%), Positives = 65/210 (30%), Gaps = 64/210 (30%)

Query: 3   MKGFYSLEKPGEFTTLIDVQFVAAMAQPGGGRNDIPSRLKRQFCIF-----NCVLPSD-- 55
           + G       G+ T +        +            + K  F IF     NC  P    
Sbjct: 158 VLGS------GK-TWV-----ALDVCL------SYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 56  KAIDNIFSVI-GEGHYNAKRGFPIEVR-NLVKQLIPLTRLL-WKSTRAQLLPTPAKFHYV 112
           + +  +   I       +     I++R + ++    L RLL  K     LL        V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE--LRRLLKSKPYENCLL--------V 249

Query: 113 FSLRDL--SRIWQGM-VG--TLST-----VIDSEKVLMLLWKHEVTRVFSDRFTIMSDKH 162
             L ++  ++ W    +    L T     V D   +      H      S   T      
Sbjct: 250 --LLNVQNAKAWNAFNLSCKILLTTRFKQVTDF--LSAATTTHISLDHHSMTLT------ 299

Query: 163 WFDDEVLNLVEQNLGVKY----REMAGTDP 188
              DEV +L+ + L  +     RE+  T+P
Sbjct: 300 --PDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	192
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	100.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	100.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	97.87
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.16
2r44_A	331	Uncharacterized protein; putative ATPase, structur	92.48
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	90.99
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	89.4
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	86.04
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	83.86
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	81.87
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	81.36
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	81.27
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	80.84

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=100.00  E-value=1e-44  Score=370.49  Aligned_cols=186  Identities=20%  Similarity=0.384  Sum_probs=170.5

Q ss_pred             CcccceecCCCCCCeeeecceEEEEEeeCCC-CCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHH
Q psy9563           1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPG-GGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIE   79 (192)
Q Consensus         1 l~~~g~Yd~~~~~~~~~i~~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~   79 (192)
                      ||+|||||++ +++|+.++|++||||||||| |||++||+||+|||+++++++|+.++|.+||++++.+++    ++.++
T Consensus      1404 ld~~g~yd~~-~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l----~~~p~ 1478 (3245)
T 3vkg_A         1404 VEKGGFWRTS-DHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALM----KLLPN 1478 (3245)
T ss_dssp             HHHSEEEETT-TTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHT----TSCGG
T ss_pred             HHcCCeEECC-CCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHH----hhChH
Confidence            4799999975 58999999999999999998 899999999999999999999999999999999999887    35667


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhhhccc-ccccCChHHHHHHHHHHHHHHHHhhcCCh
Q psy9563          80 VRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTL-STVIDSEKVLMLLWKHEVTRVFSDRFTIM  158 (192)
Q Consensus        80 i~~~~~~lv~ati~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~-~~~~~~~~~l~rlw~hE~~Rvf~DRLv~~  158 (192)
                      ++.+++.+++||+++|.++++.|+|+ .++||+||||||+||+|||+++. +....+.+.++|||+|||.|||+|||+++
T Consensus      1479 l~~~~~~lv~ati~ly~~v~~~~lp~-~k~HY~FnLRDLsrv~qGll~~~~~~~~~~~~~lvrLW~HE~~RVF~DRLv~~ 1557 (3245)
T 3vkg_A         1479 LRSFADNLTDAMVEFYSESQKRFTPD-IQAHYIYSPRELSRWDRALLEAIQTMDGCTLEGLVRLWAHEALRLFQDRLVET 1557 (3245)
T ss_dssp             GTTSHHHHHHHHHHHHHHHHHHSCTT-TSTTCCCCHHHHHHHHHHHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCC-cCCCccccHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHcCCH
Confidence            78889999999999999999999996 89999999999999999999974 44456788999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhcchhhhhcCCCCCccC
Q psy9563         159 SDKHWFDDEVLNLVEQNLGVKYREMAGTDPVFVD  192 (192)
Q Consensus       159 ~d~~~f~~~l~~~~~~~f~~~~~~~~~~~~~f~d  192 (192)
                      +||+||.+++.++++++|+...+..+.++++|||
T Consensus      1558 ~Dr~~f~~~l~~~~~~~F~~~~~~~~~~pllf~~ 1591 (3245)
T 3vkg_A         1558 EEKEWTDKKIDEVALKHFPSVNLDALKRPILYSN 1591 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTSCGGGGCSSCCCCS
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhcccCcchhh
Confidence            9999999999999999998644566678899997

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=100.00  E-value=5.4e-43  Score=356.20  Aligned_cols=186  Identities=23%  Similarity=0.421  Sum_probs=170.5

Q ss_pred             CcccceecCCCCCCeeeecceEEEEEeeCCC-CCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHH
Q psy9563           1 MNMKGFYSLEKPGEFTTLIDVQFVAAMAQPG-GGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIE   79 (192)
Q Consensus         1 l~~~g~Yd~~~~~~~~~i~~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~   79 (192)
                      +|+||||+.+ ..+|+.++|+++|||||||| |||+.|++||+|||++++++.|+.+++..||++++++++    ++.++
T Consensus      1366 le~gg~yd~~-~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l----~~~~~ 1440 (2695)
T 4akg_A         1366 MEKQGFWKTP-ENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIF----KLVPE 1440 (2695)
T ss_dssp             HHTSSEECTT-TCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHT----TSSGG
T ss_pred             HhcCCEEEcC-CCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHh----ccCHH
Confidence            4789999974 57999999999999999997 899999999999999999999999999999999999998    36778


Q ss_pred             HHHHHHhHHHHHHHHHHHHHhhcCCCCCCcceEeehhhHHHHhhhhhccccc-ccCChHHHHHHHHHHHHHHHHhhcCCh
Q psy9563          80 VRNLVKQLIPLTRLLWKSTRAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLST-VIDSEKVLMLLWKHEVTRVFSDRFTIM  158 (192)
Q Consensus        80 i~~~~~~lv~ati~ly~~i~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~-~~~~~~~l~rlw~hE~~Rvf~DRLv~~  158 (192)
                      ++.+.+.+++||+++|+++++.|+|+ .|+||+||||||+||+|||+.+.++ .+.+...++|||+|||+|||+|||+++
T Consensus      1441 v~~~~~~lv~ati~~y~~v~~~~~~~-~k~HY~FnlRDLsrv~qGll~~~~~~~~~~~~~l~rLw~HE~~Rvf~DRLv~~ 1519 (2695)
T 4akg_A         1441 FRSYTEPFARASVHLYNECKARYSTG-LQSHYLFSPRELTRLVRGVYTAINTGPRQTLRSLIRLWAYEAWRIFADRLVGV 1519 (2695)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHHSCTT-TCTTCCCCHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCc-cCCCcccCHHHHHHHHHHHHhcCchhhhccHHHHHHHHHHHHHHHHHHhcCCH
Confidence            88999999999999999999999875 8999999999999999999998654 477899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhhcchhh-hhcCCCCCccC
Q psy9563         159 SDKHWFDDEVLNLVEQNLGVKYR-EMAGTDPVFVD  192 (192)
Q Consensus       159 ~d~~~f~~~l~~~~~~~f~~~~~-~~~~~~~~f~d  192 (192)
                      +||+||.+++.++++++|+.... ....++++|||
T Consensus      1520 ~D~~~f~~~l~~~~~~~f~~~~~~~~~~~~~~f~d 1554 (2695)
T 4akg_A         1520 KEKNSFEQLLYETVDKYLPNQDLGNISSTSLLFSG 1554 (2695)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSCCCCCSTTTCCEES
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhhhccCCceeee
Confidence            99999999999999999986543 34456789987

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=97.87  E-value=0.00011  Score=76.58  Aligned_cols=133  Identities=21%  Similarity=0.285  Sum_probs=89.5

Q ss_pred             cceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhHHHHHHHHHHHH
Q psy9563          19 IDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKST   98 (192)
Q Consensus        19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~~~~lv~ati~ly~~i   98 (192)
                      .+..+++||||..+||..+|.-|.+.|+.+++..|+.+.+..|.-.   +.     +|..     .+.++..++.+|+.+
T Consensus       746 ~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---s~-----Gf~~-----a~~la~kiv~~~~l~  812 (2695)
T 4akg_A          746 PHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---IM-----GFED-----SKSLASKIVHFLELL  812 (2695)
T ss_dssp             TTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---HH-----HCSS-----HHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---hc-----CCCc-----hHHHHHHHHHHHHHH
Confidence            3678999999866899999999999999999999998777665421   11     2321     345667778889888


Q ss_pred             HhhcCCCCCCcceEeehhhHHHHhhhhhcccccccCChHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q psy9563          99 RAQLLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSDKHWFDDEVLNLV  172 (192)
Q Consensus        99 ~~~~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLv~~~d~~~f~~~l~~~~  172 (192)
                      ++++.   ...||.|.||.+..++...-............+++.    ...+.--+++ .+|...|..++.+++
T Consensus       813 ~e~ls---~q~hydfglRalksvL~~ag~lkr~~~~e~~~l~~a----l~~~~lpk~~-~~D~~lf~~li~dlF  878 (2695)
T 4akg_A          813 SSKCS---SMNHYHFGLRTLKGVLRNCSPLISEFGEGEKTVVES----LKRVILPSLG-DTDELVFKDELSKIF  878 (2695)
T ss_dssp             HHHSC---CCTTCCCSHHHHHHHHHHHHHHHHHSCSSHHHHHHH----HHHHTGGGCC-HHHHHHHHHHHHHHC
T ss_pred             HHHhC---cCCcccccHHHHHHHHHHHHHhhccCCcHHHHHHHH----HHHhccccCc-hhhHHHHHHHHHHhC
Confidence            88775   468999999999888753221111111122222222    2223444664 789999988776654

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.16  E-value=0.0022  Score=67.77  Aligned_cols=137  Identities=22%  Similarity=0.332  Sum_probs=92.7

Q ss_pred             ceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHhHHHHHHHHHHHHH
Q psy9563          20 DVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNAKRGFPIEVRNLVKQLIPLTRLLWKSTR   99 (192)
Q Consensus        20 ~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~~~~f~~~i~~~~~~lv~ati~ly~~i~   99 (192)
                      +..+++||||.-+||.++|.-|.+.|+.+.+..|+.+.+..|-   |.+     .||.+     +..|+.-++.+|+..+
T Consensus       707 ~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~---L~s-----~Gf~~-----a~~La~k~~~~~~l~~  773 (3245)
T 3vkg_A          707 DMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVM---LYS-----QGFKT-----AEVLAGKIVPLFKLCQ  773 (3245)
T ss_dssp             TCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHH---HHT-----TTCSC-----HHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHH---HHH-----cccch-----HHHHHHHHHHHHHHHH
Confidence            6889999997447999999999999999999999987766553   221     36654     3456777888998888


Q ss_pred             hhcCCCCCCcceEeehhhHHHHhh---hhhccccccc----CC----hHHHHHHHHHH---HHHHHHh----hcCChhhH
Q psy9563         100 AQLLPTPAKFHYVFSLRDLSRIWQ---GMVGTLSTVI----DS----EKVLMLLWKHE---VTRVFSD----RFTIMSDK  161 (192)
Q Consensus       100 ~~~~ptp~~~HY~Fnlrdl~r~~~---gl~~~~~~~~----~~----~~~l~rlw~hE---~~Rvf~D----RLv~~~d~  161 (192)
                      +++.   ...||-|-||-|..|+.   ++.+......    ++    ..........|   ..|..+|    ||+ .+|.
T Consensus       774 e~LS---~Q~HYDfGLRalKsVL~~AG~lkr~~~~~~~~~~~~~~~~~~~~~~~~~~E~~illralrd~nlpKl~-~~D~  849 (3245)
T 3vkg_A          774 EQLS---AQSHYDFGLRALKSVLVSAGGIKRKCQPPQLPPITDAESKTKADQIYCQYEIGVLLNSINDTMIPKLV-ADDI  849 (3245)
T ss_dssp             HSSC---CCTTCCCSHHHHHHHHHHHHHHHHSCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSC-GGGH
T ss_pred             HHhC---CCCCCCCChHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccHHHHHHHHHHHhccCCCc-hhhH
Confidence            8875   46799999999999875   3333332111    11    00111111223   2455555    443 5799


Q ss_pred             HHHHHHHHHHHH
Q psy9563         162 HWFDDEVLNLVE  173 (192)
Q Consensus       162 ~~f~~~l~~~~~  173 (192)
                      ..|..++.+++-
T Consensus       850 plF~~li~DlFP  861 (3245)
T 3vkg_A          850 PLIQSLLLDVFP  861 (3245)
T ss_dssp             HHHHHHHHHHST
T ss_pred             HHHHHHHHHhCC
Confidence            999988777653

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=92.48  E-value=0.37  Score=39.48  Aligned_cols=49  Identities=8%  Similarity=0.124  Sum_probs=41.3

Q ss_pred             ceEEEEEeeCCC-CCCCCCccccccceeE-EEecCCCHHHHHHHHHHHHhh
Q psy9563          20 DVQFVAAMAQPG-GGRNDIPSRLKRQFCI-FNCVLPSDKAIDNIFSVIGEG   68 (192)
Q Consensus        20 ~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~-~~~~~ps~~~l~~I~~~il~~   68 (192)
                      ++.++||+||+. .|+..++++|+++|.+ +.+++|+.++...|.......
T Consensus       150 ~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~  200 (331)
T 2r44_A          150 PFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM  200 (331)
T ss_dssp             SCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred             CEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence            578889999765 4777899999999985 999999999999988776643

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=90.99  E-value=2.2  Score=39.13  Aligned_cols=137  Identities=9%  Similarity=0.071  Sum_probs=81.4

Q ss_pred             ceEEEEEeeCCC-CCCCCCccccccceeEEEecCCCHHHHHHHHHHHHhhhhcc-CCCCCHHH-HHHHHhHH--------
Q psy9563          20 DVQFVAAMAQPG-GGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEGHYNA-KRGFPIEV-RNLVKQLI--------   88 (192)
Q Consensus        20 ~i~~vaa~~p~~-~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~~l~~-~~~f~~~i-~~~~~~lv--------   88 (192)
                      ++.+|+|++++. .+...++++|.|+|..+.++.|+.++...|+..+...+... .-.+.++. ..++....        
T Consensus       315 ~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~l  394 (758)
T 1r6b_X          315 KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL  394 (758)
T ss_dssp             CCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCT
T ss_pred             CeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccC
Confidence            688999999765 46677889999999999999999999999998877542210 01244332 21111110        


Q ss_pred             -HHHHHHHHHHHhh--cCCCCCCcceEeehhhHHHHhhhhhcccccccCChHHHHHHHHHHHHHHHHhhcCChhh
Q psy9563          89 -PLTRLLWKSTRAQ--LLPTPAKFHYVFSLRDLSRIWQGMVGTLSTVIDSEKVLMLLWKHEVTRVFSDRFTIMSD  160 (192)
Q Consensus        89 -~ati~ly~~i~~~--~~ptp~~~HY~Fnlrdl~r~~~gl~~~~~~~~~~~~~l~rlw~hE~~Rvf~DRLv~~~d  160 (192)
                       ...+++.+.....  +.|. ...+...+..|+.+++..+...+.......+ ..+  ..+..+.+.++++..++
T Consensus       395 p~~~i~lld~a~~~~~~~~~-~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~-~~~--l~~l~~~l~~~v~g~~~  465 (758)
T 1r6b_X          395 PDKAIDVIDEAGARARLMPV-SKRKKTVNVADIESVVARIARIPEKSVSQSD-RDT--LKNLGDRLKMLVFGQDK  465 (758)
T ss_dssp             THHHHHHHHHHHHHHHHSSS-CCCCCSCCHHHHHHHHHHHSCCCCCCSSSSH-HHH--HHHHHHHHTTTSCSCHH
T ss_pred             chHHHHHHHHHHHHHhcccc-cccCCccCHHHHHHHHHHhcCCCccccchhH-HHH--HHHHHHHHHhhccCHHH
Confidence             1234444433322  2222 2346678999999999988766544432221 111  12334456666766543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=89.40  E-value=0.33  Score=43.33  Aligned_cols=46  Identities=22%  Similarity=0.163  Sum_probs=39.9

Q ss_pred             ecceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHh
Q psy9563          18 LIDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGE   67 (192)
Q Consensus        18 i~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~   67 (192)
                      +.++.+|+|.|++.    .+++-|+++|.++.++.|+.++...|....+.
T Consensus       222 ~~~v~iI~ttN~~~----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~  267 (543)
T 3m6a_A          222 LSKVLFIATANNLA----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLL  267 (543)
T ss_dssp             CSSCEEEEECSSTT----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHH
T ss_pred             ccceEEEeccCccc----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHH
Confidence            46889999999864    78899999999999999999999999877663

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=86.04  E-value=0.88  Score=37.51  Aligned_cols=46  Identities=20%  Similarity=0.211  Sum_probs=39.8

Q ss_pred             cceEEEEEeeCCCCCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563          19 IDVQFVAAMAQPGGGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEG   68 (192)
Q Consensus        19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~   68 (192)
                      .++.+|||.|.|    ..+++.++|+| ..+.++.|+.++...|+..++..
T Consensus       148 ~~v~vI~atn~~----~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~  194 (322)
T 1xwi_A          148 DGILVLGATNIP----WVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT  194 (322)
T ss_dssp             TTEEEEEEESCT----TTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEEecCCc----ccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc
Confidence            578999999987    46889999999 78999999999999999887754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=83.86  E-value=0.45  Score=41.50  Aligned_cols=49  Identities=16%  Similarity=0.135  Sum_probs=40.9

Q ss_pred             ceEEEEEeeCCCC-CCCCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563          20 DVQFVAAMAQPGG-GRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG   68 (192)
Q Consensus        20 ~i~~vaa~~p~~~-gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~   68 (192)
                      ++.+|+|++++.. +...+++.|.|+|.++.++.|+.++...|+..++..
T Consensus       291 ~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~  340 (468)
T 3pxg_A          291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR  340 (468)
T ss_dssp             SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred             CEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHH
Confidence            5899999997642 223678999999999999999999999999887654

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=81.87  E-value=1.7  Score=39.11  Aligned_cols=50  Identities=18%  Similarity=0.213  Sum_probs=38.4

Q ss_pred             cceEEEEEeeCCCCCCC----------CCccccccce--eEEEecCCCHHHHHHHHHHHHhhhh
Q psy9563          19 IDVQFVAAMAQPGGGRN----------DIPSRLKRQF--CIFNCVLPSDKAIDNIFSVIGEGHY   70 (192)
Q Consensus        19 ~~i~~vaa~~p~~~gr~----------~i~~Rl~r~f--~~~~~~~ps~~~l~~I~~~il~~~l   70 (192)
                      .++.++||+||+ .|+.          .+++-|+++|  ..+..++|+.+ ...|...++..+-
T Consensus       433 ~~~~vIaatNp~-~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~  494 (595)
T 3f9v_A          433 ARAAVIAAGNPK-FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHS  494 (595)
T ss_dssp             CCCEEEEEECCT-TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTC
T ss_pred             CceEEEEEcCCc-CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhh
Confidence            478999999987 4555          8999999999  45666777777 7778777776553

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=81.36  E-value=1.5  Score=35.52  Aligned_cols=45  Identities=9%  Similarity=0.120  Sum_probs=36.5

Q ss_pred             cceEEEEEeeCCCCCCCCCccccccceeEEEecCCCHHHHHHHHHHHHh
Q psy9563          19 IDVQFVAAMAQPGGGRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGE   67 (192)
Q Consensus        19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~   67 (192)
                      .++.+|+++|.+.    .+.+++.+++.++.++.|+.++...|...++.
T Consensus       135 ~~~~iI~~~n~~~----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~  179 (324)
T 3u61_B          135 SNCSIIITANNID----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIR  179 (324)
T ss_dssp             GGCEEEEEESSGG----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCcc----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence            3688999999764    68899999999999999999987666655543

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=81.27  E-value=1.4  Score=38.06  Aligned_cols=46  Identities=20%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             cceEEEEEeeCCCCCCCCCccccccce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563          19 IDVQFVAAMAQPGGGRNDIPSRLKRQF-CIFNCVLPSDKAIDNIFSVIGEG   68 (192)
Q Consensus        19 ~~i~~vaa~~p~~~gr~~i~~Rl~r~f-~~~~~~~ps~~~l~~I~~~il~~   68 (192)
                      .++.+|||+|.|    ..+++.|+|+| .++.++.|+.++...|+..++..
T Consensus       270 ~~v~vI~atn~~----~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~  316 (444)
T 2zan_A          270 DGILVLGATNIP----WVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS  316 (444)
T ss_dssp             SSCEEEEEESCG----GGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEecCCCc----cccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc
Confidence            579999999987    46889999999 58999999999999999887654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=80.84  E-value=0.66  Score=42.79  Aligned_cols=49  Identities=16%  Similarity=0.135  Sum_probs=41.3

Q ss_pred             ceEEEEEeeCCCC-CCCCCccccccceeEEEecCCCHHHHHHHHHHHHhh
Q psy9563          20 DVQFVAAMAQPGG-GRNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIGEG   68 (192)
Q Consensus        20 ~i~~vaa~~p~~~-gr~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il~~   68 (192)
                      ++.+|+|++++.. +...+++.|.|+|.++.++.|+.++...|+..+...
T Consensus       291 ~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~  340 (758)
T 3pxi_A          291 ELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDR  340 (758)
T ss_dssp             SCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred             CEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHH
Confidence            5899999997652 334689999999999999999999999999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	192
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	85.87
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	85.37

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=85.87  E-value=0.34  Score=37.54  Aligned_cols=47  Identities=13%  Similarity=0.118  Sum_probs=37.9

Q ss_pred             ceEEEEEeeCCCCC-CCCCccccccceeEEEecCCCHHHHHHHHHHHH
Q psy9563          20 DVQFVAAMAQPGGG-RNDIPSRLKRQFCIFNCVLPSDKAIDNIFSVIG   66 (192)
Q Consensus        20 ~i~~vaa~~p~~~g-r~~i~~Rl~r~f~~~~~~~ps~~~l~~I~~~il   66 (192)
                      ++++||+++|...- ...-++-|.|+|..+.+++|+.++...|...+.
T Consensus       147 ~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~  194 (268)
T d1r6bx2         147 KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK  194 (268)
T ss_dssp             CCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred             CCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhh
Confidence            79999999985422 224467899999999999999999999887644

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.37  E-value=1  Score=33.96  Aligned_cols=46  Identities=22%  Similarity=0.335  Sum_probs=37.3

Q ss_pred             cceEEEEEeeCCCCCCCCCcccccc--ce-eEEEecCCCHHHHHHHHHHHHhh
Q psy9563          19 IDVQFVAAMAQPGGGRNDIPSRLKR--QF-CIFNCVLPSDKAIDNIFSVIGEG   68 (192)
Q Consensus        19 ~~i~~vaa~~p~~~gr~~i~~Rl~r--~f-~~~~~~~ps~~~l~~I~~~il~~   68 (192)
                      .+|-+|||.|.|.    .|++-++|  .| ..+.++.|+.++-..|+..+++.
T Consensus       139 ~~vlvi~tTn~~~----~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~  187 (258)
T d1e32a2         139 AHVIVMAATNRPN----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN  187 (258)
T ss_dssp             SCEEEEEEESCGG----GSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTT
T ss_pred             CCccEEEeCCCcc----ccchhhhhcccccceeECCCCCHHHHHHHhhhhccC
Confidence            4588999998763    56777777  56 79999999999999999887754