Psyllid ID: psy9569

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MFRALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKPELALESVYDM
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHccccccccccccHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHccccEcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccHcccccccc
Coil and Loop (DISEMBL)
MFRALASRLAASSSQVLRQTAVskvkpltfapirsfshaveESDEEFVKRYVAFfnqpdidgwdiRRGLmnlahddcvpdpEIIIAALKAIRRVNDYALAIRFLEttefktggshdkiwPYIVQEITPTLkelgietpaqlgydkpelalESVYDM
Flexible Loop (DISEMBL)
MFRALasrlaasssqvlrqtavskvkpltfapiRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLEttefktggshdkiwPYIVQEITPTLKELGietpaqlgydkpelalesvydm
Low Complexity Region (SEG)
MFralasrlaasssQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKPELALESVYDM
Disordered region (IsUnstruct)
************************VKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGY*************
Disordered Region (DISOPRED)
MFR******A********************************SDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKPELALESVYDM
Disordered Region (DISEMBL)
*******************TAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKPELALESVYDM
Disordered Region (DISPRO)
MFRALASRLAASSSQVLRQT*********************ESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKPELALESVY**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKPELALESVYDM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q94514	149	Cytochrome c oxidase subu	yes	N/A	0.878	0.919	0.506	4e-34
B0VYY3	150	Cytochrome c oxidase subu	N/A	N/A	0.897	0.933	0.478	9e-32
B0VYY2	150	Cytochrome c oxidase subu	N/A	N/A	0.717	0.746	0.539	1e-31
P11240	146	Cytochrome c oxidase subu	yes	N/A	0.717	0.767	0.539	2e-31
P00426	152	Cytochrome c oxidase subu	yes	N/A	0.717	0.736	0.530	3e-31
B0VYY4	152	Cytochrome c oxidase subu	N/A	N/A	0.717	0.736	0.539	3e-31
P12787	146	Cytochrome c oxidase subu	yes	N/A	0.717	0.767	0.539	3e-31
B0VYX4	150	Cytochrome c oxidase subu	N/A	N/A	0.717	0.746	0.522	3e-31
B0VYX1	150	Cytochrome c oxidase subu	yes	N/A	0.717	0.746	0.522	3e-31
P20674	150	Cytochrome c oxidase subu	yes	N/A	0.717	0.746	0.522	3e-31

>sp|Q94514|COX5A_DROME Cytochrome c oxidase subunit 5A, mitochondrial OS=Drosophila melanogaster GN=CoVa PE=1 SV=2

 Score =  143 bits (361), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/152 (50%), Positives = 100/152 (65%), Gaps = 15/152 (9%)

Query: 4   ALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGW 63
           AL S L  +SS+V              A +R   H  EES EEF KRY  +F++  IDGW
Sbjct: 12  ALRSSLVGTSSRV--------------AAVRCL-HGTEESAEEFDKRYEKYFSREGIDGW 56

Query: 64  DIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIV 123
           +IR+G+ +L   D VP P+II A L+A RRVND ALAIR+LE  + K G     ++PY++
Sbjct: 57  EIRKGMNDLLGMDLVPSPKIIEAGLRASRRVNDIALAIRWLEGCKDKCGDQKATLYPYLL 116

Query: 124 QEITPTLKELGIETPAQLGYDKPELALESVYD 155
           ++ITPTL+ELGI T  +LGYDKPELAL+SVYD
Sbjct: 117 EKITPTLQELGIPTIEELGYDKPELALKSVYD 148

This is the heme A-containing chain of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
Drosophila melanogaster (taxid: 7227)

>sp|B0VYY3|COX5A_OTOCR Cytochrome c oxidase subunit 5A, mitochondrial OS=Otolemur crassicaudatus GN=COX5A PE=2 SV=1

 Score =  135 bits (340), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/142 (47%), Positives = 93/142 (65%), Gaps = 2/142 (1%)

Query: 4   ALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGW 63
           A+A+   A S  +L  T V          IR +SH   E+DEEF  R+V +FN+PDID W
Sbjct: 10  AVAAASRAGSRGLLHPTPVPGPT-AAIQSIRCYSHGSHETDEEFDARWVTYFNKPDIDAW 68

Query: 64  DIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIV 123
           ++R+G+  L   D VP+P+II AAL+A RR+ND+A A+R LE  + K  G H +I+PY++
Sbjct: 69  ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 127

Query: 124 QEITPTLKELGIETPAQLGYDK 145
           QE+ PTL ELGI TP +LG DK
Sbjct: 128 QELRPTLNELGISTPEELGLDK 149

This is the heme A-containing chain of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Otolemur crassicaudatus (taxid: 9463)

>sp|B0VYY2|COX5A_NYCCO Cytochrome c oxidase subunit 5A, mitochondrial OS=Nycticebus coucang GN=COX5A PE=2 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 33  IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
           IR +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct: 38  IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 97

Query: 93  RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           R+ND+A A+R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98  RLNDFASAVRILEVVKDKA-GPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149

This is the heme A-containing chain of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Nycticebus coucang (taxid: 9470)

>sp|P11240|COX5A_RAT Cytochrome c oxidase subunit 5A, mitochondrial OS=Rattus norvegicus GN=Cox5a PE=1 SV=1

 Score =  134 bits (338), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 33  IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
           IR +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct: 34  IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 93

Query: 93  RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           R+ND+A A+R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 94  RLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 145

This is the heme A-containing chain of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Rattus norvegicus (taxid: 10116)

>sp|P00426|COX5A_BOVIN Cytochrome c oxidase subunit 5A, mitochondrial OS=Bos taurus GN=COX5A PE=1 SV=2

 Score =  134 bits (337), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 33  IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
           +R +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct: 40  LRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 99

Query: 93  RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           R+ND+A A+R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 100 RLNDFASAVRILEVVKDKA-GPHKEIYPYVIQELRPTLNELGISTPEELGLDK 151

This is the heme A-containing chain of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Bos taurus (taxid: 9913)

>sp|B0VYY4|COX5A_EULFU Cytochrome c oxidase subunit 5A, mitochondrial OS=Eulemur fulvus fulvus GN=COX5A PE=2 SV=1

 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 33  IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
           IR +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct: 40  IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 99

Query: 93  RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           R+ND+A A+R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 100 RLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 151

This is the heme A-containing chain of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Eulemur fulvus fulvus (taxid: 40322)

>sp|P12787|COX5A_MOUSE Cytochrome c oxidase subunit 5A, mitochondrial OS=Mus musculus GN=Cox5a PE=1 SV=2

 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 33  IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
           IR +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct: 34  IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 93

Query: 93  RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           R+ND+A A+R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 94  RLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 145

This is the heme A-containing chain of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Mus musculus (taxid: 10090)

>sp|B0VYX4|COX5A_PONPY Cytochrome c oxidase subunit 5A, mitochondrial OS=Pongo pygmaeus GN=COX5A PE=2 SV=1

 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 33  IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
           +R +SH  +E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct: 38  VRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97

Query: 93  RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           R+ND+A  +R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98  RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149

This is the heme A-containing chain of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Pongo pygmaeus (taxid: 9600)

>sp|B0VYX1|COX5A_PANTR Cytochrome c oxidase subunit 5A, mitochondrial OS=Pan troglodytes GN=COX5A PE=2 SV=1

 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 33  IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
           +R +SH  +E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct: 38  VRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97

Query: 93  RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           R+ND+A  +R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98  RLNDFASTVRILEAVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149

This is the heme A-containing chain of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Pan troglodytes (taxid: 9598)

>sp|P20674|COX5A_HUMAN Cytochrome c oxidase subunit 5A, mitochondrial OS=Homo sapiens GN=COX5A PE=1 SV=2

 Score =  134 bits (336), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 1/113 (0%)

Query: 33  IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
           +R +SH  +E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct: 38  VRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97

Query: 93  RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           R+ND+A  +R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 98  RLNDFASTVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 149

This is the heme A-containing chain of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
110671474	156	putative mitochondrial cytochrome c oxid	1.0	1.0	0.980	4e-85
91094443	152	PREDICTED: similar to cytochrome c oxida	0.967	0.993	0.557	5e-41
389608597	152	cytochrome c oxidase subunit Va [Papilio	0.942	0.967	0.571	2e-40
389611073	152	cytochrome c oxidase subunit Va [Papilio	0.942	0.967	0.557	5e-40
149689122	150	cytochrome oxidase subunit Va [Triatoma	0.955	0.993	0.519	9e-40
357603541	152	cytochrome c oxidase subunit Va [Danaus	0.942	0.967	0.571	1e-39
164448662	151	cytochrome c oxidase subunit Va [Bombyx	0.935	0.966	0.564	2e-39
307191580	154	Cytochrome c oxidase subunit 5A, mitocho	0.987	1.0	0.525	5e-39
90819986	152	mitochondrial cytochrome c oxidase subun	0.967	0.993	0.564	7e-39
16306441	150	cytochrome c oxidase subunit Va [Rhyzope	0.846	0.88	0.568	8e-39

>gi|110671474|gb|ABG81988.1| putative mitochondrial cytochrome c oxidase polypeptide Va [Diaphorina citri]

 Score =  318 bits (816), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 153/156 (98%), Positives = 154/156 (98%)

Query: 1   MFRALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDI 60
           MFRALASRLA SSSQVLRQTAVSKVKPLT APIRSFSHAVEESDEEFVKRYVAFFNQPDI
Sbjct: 1   MFRALASRLATSSSQVLRQTAVSKVKPLTLAPIRSFSHAVEESDEEFVKRYVAFFNQPDI 60

Query: 61  DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWP 120
           DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWP
Sbjct: 61  DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWP 120

Query: 121 YIVQEITPTLKELGIETPAQLGYDKPELALESVYDM 156
           YIVQEITPTLKELGIETP+QLGYDKPELALESVYDM
Sbjct: 121 YIVQEITPTLKELGIETPSQLGYDKPELALESVYDM 156

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094443|ref|XP_970156.1| PREDICTED: similar to cytochrome c oxidase subunit Va [Tribolium castaneum] gi|270016379|gb|EFA12825.1| hypothetical protein TcasGA2_TC001862 [Tribolium castaneum]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 87/156 (55%), Positives = 109/156 (69%), Gaps = 5/156 (3%)

Query: 1   MFRALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDI 60
           MFR  A RL +     L + AV   KP      R  S    E+DE+F  RY  FFN+ DI
Sbjct: 1   MFRTTALRLTS-----LVRGAVQVSKPSVATTTRFMSAHSTETDEQFDTRYENFFNRKDI 55

Query: 61  DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWP 120
           DGW+IR+G+ +L   D VP+P+I+IAALKA RRVNDYALA+R +E  + K GG  ++I+P
Sbjct: 56  DGWEIRQGINDLCGHDLVPEPKILIAALKACRRVNDYALAVRIVEAVKDKCGGKVNEIYP 115

Query: 121 YIVQEITPTLKELGIETPAQLGYDKPELALESVYDM 156
           YI+QEI PTL ELGI+TP +LGYDKPELALESVYD+
Sbjct: 116 YIIQEIRPTLSELGIDTPEELGYDKPELALESVYDI 151

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608597|dbj|BAM17908.1| cytochrome c oxidase subunit Va [Papilio xuthus]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 106/147 (72%)

Query: 10  AASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGL 69
           + S   VL+++ +  V+     P+R       ESDEEF  RY AFFN+ DIDGW+IR+G+
Sbjct: 6   SGSLINVLKRSIIPAVRTSAAIPVRWSHDGPVESDEEFDNRYEAFFNRKDIDGWEIRQGM 65

Query: 70  MNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPT 129
            +L   D VPDP+II AAL A RRVNDYALA+RF+E  + K G   ++I+PYI+QEI PT
Sbjct: 66  NDLCGMDLVPDPKIIRAALHACRRVNDYALAVRFIEACKNKCGPKVNEIYPYIIQEIKPT 125

Query: 130 LKELGIETPAQLGYDKPELALESVYDM 156
           L ELGIETP +LGYDKPELALESVYD+
Sbjct: 126 LTELGIETPEELGYDKPELALESVYDV 152

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389611073|dbj|BAM19147.1| cytochrome c oxidase subunit Va [Papilio polytes]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 106/147 (72%)

Query: 10  AASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGL 69
           + S   VL+++ +  V+     P+R       ESDEEF  RY AFFN+ DIDGW+IR+G+
Sbjct: 6   SGSLINVLKRSIIPAVRTSAAIPVRWSHDGPVESDEEFDNRYEAFFNRKDIDGWEIRQGM 65

Query: 70  MNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPT 129
            +L   D +PDP+II +AL A RRVNDYALA+RF+E  + K G   ++I+PYI+QEI PT
Sbjct: 66  NDLCGMDLIPDPKIIRSALHACRRVNDYALAVRFIEACKNKCGPKVNEIYPYIIQEIKPT 125

Query: 130 LKELGIETPAQLGYDKPELALESVYDM 156
           L ELGIETP +LGYDKPELALESVYD+
Sbjct: 126 LTELGIETPEELGYDKPELALESVYDI 152

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149689122|gb|ABR27908.1| cytochrome oxidase subunit Va [Triatoma infestans]

 Score =  168 bits (425), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 81/156 (51%), Positives = 111/156 (71%), Gaps = 7/156 (4%)

Query: 1   MFRALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDI 60
           M R+L+  L  +     ++  +  ++P+    +R  S    E+DEEF +RY+ +FN+PDI
Sbjct: 1   MLRSLSFVLNTT-----KRAVIGNIRPI--GQLRPMSSHSTETDEEFDRRYINYFNRPDI 53

Query: 61  DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWP 120
           DGWDIR+ + +L+  D VP+P+II AAL+A RRVNDYALA+RFLE   FK G   DKI+P
Sbjct: 54  DGWDIRKAMNDLSGMDLVPEPKIIEAALRACRRVNDYALAVRFLEALRFKCGNHVDKIYP 113

Query: 121 YIVQEITPTLKELGIETPAQLGYDKPELALESVYDM 156
           YI+QEI  TL ELGI+TP +LGYDKPELAL +VY++
Sbjct: 114 YIIQEIQKTLDELGIDTPEKLGYDKPELALPNVYNI 149

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357603541|gb|EHJ63822.1| cytochrome c oxidase subunit Va [Danaus plexippus]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/147 (57%), Positives = 107/147 (72%)

Query: 10  AASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGL 69
           + S  +V +++ V   +  +  P R       ESDEEF  RY AFFN+ DIDGW+IR+G+
Sbjct: 6   SGSLVKVFKKSLVPVTRVGSVLPSRLSHGGPVESDEEFDCRYEAFFNRKDIDGWEIRKGM 65

Query: 70  MNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPT 129
            +LA  D VPDP+II AA+ A RRVNDYALA+RFLE+ + K G   ++I+PYI+QEI PT
Sbjct: 66  NDLAGMDLVPDPKIINAAMYACRRVNDYALAVRFLESCKDKCGPKLNEIYPYILQEIKPT 125

Query: 130 LKELGIETPAQLGYDKPELALESVYDM 156
           L ELGIETP +LGYDKPELALE+VYDM
Sbjct: 126 LIELGIETPEELGYDKPELALENVYDM 152

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|164448662|ref|NP_001106743.1| cytochrome c oxidase subunit Va [Bombyx mori] gi|87248477|gb|ABD36291.1| cytochrome c oxidase subunit Va [Bombyx mori]

 Score =  167 bits (422), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/147 (56%), Positives = 107/147 (72%), Gaps = 1/147 (0%)

Query: 10  AASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGL 69
           + + + VL+++ V  V+    +  RS    VE SDEEF  RY A+FN+ DIDGW+IR+G+
Sbjct: 6   SGAFANVLKRSLVPAVRVSAVSVRRSHGGPVE-SDEEFDNRYEAYFNRKDIDGWEIRKGM 64

Query: 70  MNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPT 129
            +L   D VPDP+II AAL A RRVNDYALA+RF+E  + K G   ++I+PYI+QEI PT
Sbjct: 65  NDLCGMDLVPDPKIIKAALHACRRVNDYALAVRFIEACKDKCGNKVNEIYPYIIQEIKPT 124

Query: 130 LKELGIETPAQLGYDKPELALESVYDM 156
           L ELGI+TP +LGYDKPELALESVY M
Sbjct: 125 LTELGIDTPEELGYDKPELALESVYHM 151

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191580|gb|EFN75078.1| Cytochrome c oxidase subunit 5A, mitochondrial [Harpegnathos saltator]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 82/156 (52%), Positives = 111/156 (71%), Gaps = 2/156 (1%)

Query: 1   MFRALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDI 60
           M R +A+R+++++   L   A      +T       SH V+E+DEEF +RYV FF++ DI
Sbjct: 1   MLRVVAARVSSAARTSL--LASRSATAVTGTQSTRASHDVQETDEEFDERYVKFFSRNDI 58

Query: 61  DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWP 120
           D W+IR+ + +LA  D VP+P+II AAL+A RR+ND+ALA+RF+E+ + K G   + I+P
Sbjct: 59  DHWEIRKAMNDLAGMDVVPEPKIICAALRACRRLNDFALAVRFIESVKEKAGPHINTIYP 118

Query: 121 YIVQEITPTLKELGIETPAQLGYDKPELALESVYDM 156
           YI+QEI PTL ELGI TP QLGYDKPELALESVY M
Sbjct: 119 YIIQEIKPTLDELGISTPEQLGYDKPELALESVYHM 154

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90819986|gb|ABD98750.1| mitochondrial cytochrome c oxidase subunit Va-like protein [Graphocephala atropunctata]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 88/156 (56%), Positives = 109/156 (69%), Gaps = 5/156 (3%)

Query: 1   MFRALASRLAASSSQVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDI 60
           MFR  A  L  ++  V RQT     +    A  R  +H  E +DEEF  RY A+F +PDI
Sbjct: 1   MFRLTALTLNNAARGVFRQTLQ---RSEIAASSRMMAHHAE-TDEEFDSRYEAYFKRPDI 56

Query: 61  DGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWP 120
           DGW+IR+ + +L   D VP+P+IIIAALKA RRVNDYALA+RFLE  E+KTGG  D I  
Sbjct: 57  DGWEIRKAMNDLCGMDLVPEPKIIIAALKACRRVNDYALAVRFLEAVEYKTGGRKD-ISQ 115

Query: 121 YIVQEITPTLKELGIETPAQLGYDKPELALESVYDM 156
           YI  EI PTL+ELGI+TP +LGYDKPELAL+SV+D+
Sbjct: 116 YIHNEIKPTLEELGIDTPDKLGYDKPELALQSVFDI 151

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|16306441|gb|AAL17607.1|AF420467_1 cytochrome c oxidase subunit Va [Rhyzopertha dominica]

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 75/132 (56%), Positives = 102/132 (77%)

Query: 25  VKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEII 84
           VKP   A  R  S    E+DE+F  RY  +FN+PDIDGW++R+G+ ++  +D VP+P+I+
Sbjct: 18  VKPTIVAGPRFMSGHNVETDEQFDARYENYFNRPDIDGWEVRKGMNDICGEDVVPEPKIV 77

Query: 85  IAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYD 144
           IAALKA RRVNDYALA+RF+E  + K GG   +I+PYI+QEI PTL ELGI+TP +LGYD
Sbjct: 78  IAALKACRRVNDYALAVRFIEAIKDKCGGKVAEIYPYIIQEIRPTLTELGIDTPEELGYD 137

Query: 145 KPELALESVYDM 156
           KPELAL+++Y++
Sbjct: 138 KPELALQNIYEV 149

Source: Rhyzopertha dominica

Species: Rhyzopertha dominica

Genus: Rhyzopertha

Family: Bostrichidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
FB|FBgn0019624	149	CoVa "Cytochrome c oxidase sub	0.794	0.832	0.56	2.6e-31
UNIPROTKB|J9P3C5	151	J9P3C5 "Uncharacterized protei	0.833	0.860	0.488	3.8e-30
UNIPROTKB|F1SJ34	152	COX5A "Uncharacterized protein	0.717	0.736	0.539	6.2e-30
MGI|MGI:88474	146	Cox5a "cytochrome c oxidase su	0.717	0.767	0.539	6.2e-30
RGD|620607	146	Cox5a "cytochrome c oxidase, s	0.717	0.767	0.539	6.2e-30
UNIPROTKB|F1P6A4	153	COX5A "Cytochrome c oxidase su	0.717	0.732	0.530	7.9e-30
UNIPROTKB|P00426	152	COX5A "Cytochrome c oxidase su	0.717	0.736	0.530	1e-29
UNIPROTKB|P20674	150	COX5A "Cytochrome c oxidase su	0.717	0.746	0.522	1.3e-29
ZFIN|ZDB-GENE-030131-5162	151	cox5ab "cytochrome c oxidase s	0.801	0.827	0.480	2.1e-29
ZFIN|ZDB-GENE-050522-133	141	cox5aa "cytochrome c oxidase s	0.814	0.900	0.484	1.5e-28

FB|FBgn0019624 CoVa "Cytochrome c oxidase subunit Va" [Drosophila melanogaster (taxid:7227)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 70/125 (56%), Positives = 91/125 (72%)

Query:    31 APIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKA 90
             A +R   H  EES EEF KRY  +F++  IDGW+IR+G+ +L   D VP P+II A L+A
Sbjct:    25 AAVRCL-HGTEESAEEFDKRYEKYFSREGIDGWEIRKGMNDLLGMDLVPSPKIIEAGLRA 83

Query:    91 IRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKPELAL 150
              RRVND ALAIR+LE  + K G     ++PY++++ITPTL+ELGI T  +LGYDKPELAL
Sbjct:    84 SRRVNDIALAIRWLEGCKDKCGDQKATLYPYLLEKITPTLQELGIPTIEELGYDKPELAL 143

Query:   151 ESVYD 155
             +SVYD
Sbjct:   144 KSVYD 148

GO:0005751 "mitochondrial respiratory chain complex IV" evidence=ISS;NAS

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS;NAS

GO:0005743 "mitochondrial inner membrane" evidence=NAS

GO:0006123 "mitochondrial electron transport, cytochrome c to oxygen" evidence=ISS

GO:0045787 "positive regulation of cell cycle" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|J9P3C5 J9P3C5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 64/131 (48%), Positives = 88/131 (67%)

Query:    15 QVLRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAH 74
             Q LR  A +         +R +SH   E+DEEF  R+V +FN+PDID W++R+G+  L  
Sbjct:    21 QGLRYPAPAPSPATAVQSVRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVG 80

Query:    75 DDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELG 134
              D VP+P+II AAL+A RR+ND+A A+R LE  + K G  H +I+PY++QE+ PTL ELG
Sbjct:    81 YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG-PHKEIYPYVIQELRPTLNELG 139

Query:   135 IETPAQLGYDK 145
             I TP +LG DK
Sbjct:   140 ISTPEELGLDK 150

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|F1SJ34 COX5A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 61/113 (53%), Positives = 83/113 (73%)

Query:    33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
             IR +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct:    40 IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 99

Query:    93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
             R+ND+A A+R LE  + K G  H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct:   100 RLNDFASAVRILEVVKDKAG-PHKEIYPYVIQELRPTLNELGISTPEELGLDK 151

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

MGI|MGI:88474 Cox5a "cytochrome c oxidase subunit Va" [Mus musculus (taxid:10090)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 61/113 (53%), Positives = 83/113 (73%)

Query:    33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
             IR +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct:    34 IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 93

Query:    93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
             R+ND+A A+R LE  + K G  H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct:    94 RLNDFASAVRILEVVKDKAG-PHKEIYPYVIQELRPTLNELGISTPEELGLDK 145

GO:0004129 "cytochrome-c oxidase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

RGD|620607 Cox5a "cytochrome c oxidase, subunit Va" [Rattus norvegicus (taxid:10116)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 61/113 (53%), Positives = 83/113 (73%)

Query:    33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
             IR +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct:    34 IRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 93

Query:    93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
             R+ND+A A+R LE  + K G  H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct:    94 RLNDFASAVRILEVVKDKAG-PHKEIYPYVIQELRPTLNELGISTPEELGLDK 145

GO:0004129 "cytochrome-c oxidase activity" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1P6A4 COX5A "Cytochrome c oxidase subunit 5A, mitochondrial" [Canis lupus familiaris (taxid:9615)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 60/113 (53%), Positives = 83/113 (73%)

Query:    33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
             +R +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct:    41 VRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 100

Query:    93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
             R+ND+A A+R LE  + K G  H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct:   101 RLNDFASAVRILEVVKDKAG-PHKEIYPYVIQELRPTLNELGISTPEELGLDK 152

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|P00426 COX5A "Cytochrome c oxidase subunit 5A, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 60/113 (53%), Positives = 83/113 (73%)

Query:    33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
             +R +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct:    40 LRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 99

Query:    93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
             R+ND+A A+R LE  + K G  H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct:   100 RLNDFASAVRILEVVKDKAG-PHKEIYPYVIQELRPTLNELGISTPEELGLDK 151

GO:0004129 "cytochrome-c oxidase activity" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P20674 COX5A "Cytochrome c oxidase subunit 5A, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 59/113 (52%), Positives = 83/113 (73%)

Query:    33 IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
             +R +SH  +E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct:    38 VRCYSHGSQETDEEFDARWVTYFNKPDIDAWELRKGINTLVTYDMVPEPKIIDAALRACR 97

Query:    93 RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
             R+ND+A  +R LE  + K G  H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct:    98 RLNDFASTVRILEVVKDKAG-PHKEIYPYVIQELRPTLNELGISTPEELGLDK 149

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009055 "electron carrier activity" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

ZFIN|ZDB-GENE-030131-5162 cox5ab "cytochrome c oxidase subunit Vab" [Danio rerio (taxid:7955)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 62/129 (48%), Positives = 92/129 (71%)

Query:    17 LRQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDD 76
             L +T  ++  PL    +R +SHA  E+DEEF  R+V +F++PD+D W++R+G+  L   D
Sbjct:    26 LSRTRAAQTAPLA---VRCYSHAKVETDEEFDSRWVTYFSKPDLDAWELRKGMNTLIGYD 82

Query:    77 CVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIE 136
              VP+P+I+ +AL+A RR+ND A AIR LE  + K+G  H +I+PY++QE+ PTL+ELGI 
Sbjct:    83 LVPEPKILDSALRACRRLNDLASAIRILEAVKDKSG-PHKEIYPYVIQELKPTLQELGIS 141

Query:   137 TPAQLGYDK 145
             TP +LG DK
Sbjct:   142 TPEELGIDK 150

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;IMP

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0021522 "spinal cord motor neuron differentiation" evidence=IMP

GO:0048568 "embryonic organ development" evidence=IMP

ZFIN|ZDB-GENE-050522-133 cox5aa "cytochrome c oxidase subunit Vaa" [Danio rerio (taxid:7955)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 62/128 (48%), Positives = 88/128 (68%)

Query:    18 RQTAVSKVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDC 77
             R  A S+ +       RS+SH  +E+DEEF  R+V +F++PDID W++R+G+  L   D 
Sbjct:    14 RSLARSRPQYTASVAARSYSHGKQETDEEFDARWVTYFSKPDIDAWELRKGMNTLIGYDL 73

Query:    78 VPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIET 137
             VP+P+I+ AAL+A RR++D A AIR LE  + K G  H +I+PY++QE+ PTL ELGI T
Sbjct:    74 VPEPKILDAALRACRRLDDLASAIRILEAVKDKAG-PHKEIYPYVIQELRPTLDELGIAT 132

Query:   138 PAQLGYDK 145
             P +LG DK
Sbjct:   133 PEELGIDK 140

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;IMP

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0048568 "embryonic organ development" evidence=IMP

GO:0021522 "spinal cord motor neuron differentiation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94514	COX5A_DROME	No assigned EC number	0.5065	0.8782	0.9194	yes	N/A
Q53CF8	COX5A_MACMU	No assigned EC number	0.5221	0.7179	0.7466	yes	N/A
P12787	COX5A_MOUSE	No assigned EC number	0.5398	0.7179	0.7671	yes	N/A
P20674	COX5A_HUMAN	No assigned EC number	0.5221	0.7179	0.7466	yes	N/A
P55954	COX5A_CAEEL	No assigned EC number	0.4109	0.8653	0.7758	yes	N/A
P11240	COX5A_RAT	No assigned EC number	0.5398	0.7179	0.7671	yes	N/A
Q9UTF6	COX6_SCHPO	No assigned EC number	0.3762	0.6153	0.6857	yes	N/A
P00426	COX5A_BOVIN	No assigned EC number	0.5309	0.7179	0.7368	yes	N/A
P00427	COX6_YEAST	No assigned EC number	0.3684	0.7051	0.7432	yes	N/A
B0VYX1	COX5A_PANTR	No assigned EC number	0.5221	0.7179	0.7466	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
cd00923	103	cd00923, Cyt_c_Oxidase_Va, Cytochrome c oxidase su	3e-59
pfam02284	108	pfam02284, COX5A, Cytochrome c oxidase subunit Va	3e-41

>gnl|CDD|238463 cd00923, Cyt_c_Oxidase_Va, Cytochrome c oxidase subunit Va

 Score =  178 bits (454), Expect = 3e-59
 Identities = 65/104 (62%), Positives = 82/104 (78%), Gaps = 1/104 (0%)

Query: 40  VEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYAL 99
            EE+DEEF  RY  +FN+PDIDGW++RRGL NL   D VP+P++I AAL+A RRVND+AL
Sbjct: 1   SEETDEEFDARYETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFAL 60

Query: 100 AIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGY 143
           A+R LE  + K  G+H +I+PYI+QEI PTLKELGI TP +LGY
Sbjct: 61  AVRILEAIKDKC-GAHKEIYPYILQEIKPTLKELGISTPEELGY 103

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. Length = 103

>gnl|CDD|111202 pfam02284, COX5A, Cytochrome c oxidase subunit Va

 Score =  133 bits (335), Expect = 3e-41
 Identities = 61/109 (55%), Positives = 80/109 (73%), Gaps = 1/109 (0%)

Query: 37  SHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVND 96
           SH  EE+DEEF  RY  +FN+ DID W++R+G+  L   D VP+P+II AAL+A RRVND
Sbjct: 1   SHGSEETDEEFDARYEKYFNKEDIDAWELRKGMNTLVGYDLVPEPKIIEAALRACRRVND 60

Query: 97  YALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           +A AIR LE  + K  G H +I+PY++QE+ PTL+ELGI TP +LG DK
Sbjct: 61  FASAIRILEVVKDKA-GPHKEIYPYVLQELRPTLQELGIPTPEELGLDK 108

Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit Va. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	100.0
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	100.0
KOG4077|consensus	149		100.0
PF08542	89	Rep_fac_C: Replication factor C C-terminal domain;	83.69
cd00620	126	Methyltransferase_Sun N-terminal RNA binding domai	81.57

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=100.00  E-value=4.3e-69  Score=407.88  Aligned_cols=108  Identities=62%  Similarity=1.041  Sum_probs=89.4

Q ss_pred             CCCCCCCHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCcc
Q psy9569          37 SHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHD  116 (156)
Q Consensus        37 s~h~~Et~eeF~aRy~~~F~~~~iD~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~  116 (156)
                      |||++||||+|++||++|||+++||+||+||||||||||||||+|+||+|||||||||||||+||||||+||+|||++ +
T Consensus         1 sH~~~Et~eeF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~-~   79 (108)
T PF02284_consen    1 SHGSEETDEEFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK-K   79 (108)
T ss_dssp             -TS----HHHHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--T
T ss_pred             CCCcccCHHHHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh-H
Confidence            466899999999999999999999999999999999999999999999999999999999999999999999999998 6


Q ss_pred             chhHHHHHhhhhhhHhhCCCCccccCCCC
Q psy9569         117 KIWPYIVQEITPTLKELGIETPAQLGYDK  145 (156)
Q Consensus       117 ~iY~~~lqElkPtl~ELGI~t~EeLgydk  145 (156)
                      +|||||+|||||||+||||+|||||||||
T Consensus        80 ~~Y~~~lqElkPtl~ELGI~t~EeLg~dk  108 (108)
T PF02284_consen   80 EIYPYILQELKPTLEELGIPTPEELGYDK  108 (108)
T ss_dssp             THHHHHHHHHHHHHHHHT---TTTTTTT-
T ss_pred             HHHHHHHHHHhhHHHHhCCCCHHHhCCCC
Confidence            69999999999999999999999999997

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=100.00  E-value=5.7e-66  Score=388.21  Aligned_cols=103  Identities=62%  Similarity=1.055  Sum_probs=100.7

Q ss_pred             CCCCHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchh
Q psy9569          40 VEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIW  119 (156)
Q Consensus        40 ~~Et~eeF~aRy~~~F~~~~iD~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY  119 (156)
                      ++||+|+|++||++|||+++||+||+||||||||||||||+|+||+|||||||||||||+||||||+||+|||++ ++||
T Consensus         1 ~~Et~EeF~aRye~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~-~~~y   79 (103)
T cd00923           1 SEETDEEFDARYETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAH-KEIY   79 (103)
T ss_pred             CcccHHHHHHHHHHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCc-hhhH
Confidence            379999999999999999999999999999999999999999999999999999999999999999999999986 6899


Q ss_pred             HHHHHhhhhhhHhhCCCCccccCC
Q psy9569         120 PYIVQEITPTLKELGIETPAQLGY  143 (156)
Q Consensus       120 ~~~lqElkPtl~ELGI~t~EeLgy  143 (156)
                      |||+|||||||+||||+|||||||
T Consensus        80 ~~~lqeikp~l~ELGI~t~EeLgy  103 (103)
T cd00923          80 PYILQEIKPTLKELGISTPEELGY  103 (103)
T ss_pred             HHHHHHHhHHHHHHCCCCHHHhCc
Confidence            999999999999999999999998

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG4077|consensus

Probab=100.00  E-value=1.7e-64  Score=398.51  Aligned_cols=146  Identities=41%  Similarity=0.701  Sum_probs=121.4

Q ss_pred             ChHHHHHHHHhhhhHHHHh--hhcccCCc-cccccccccCCCCCCCHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhcCCC
Q psy9569           1 MFRALASRLAASSSQVLRQ--TAVSKVKP-LTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDC   77 (156)
Q Consensus         1 Mlr~~~~~~~~~~r~~~~~--~~~~~~~~-~~~~~~r~~s~h~~Et~eeF~aRy~~~F~~~~iD~we~rrglN~l~~~Dl   77 (156)
                      ||..++.+++-+.|.+...  +++.+..+ ++...++.++.|..||+||||+||++|||+++||+||+||||||||+||+
T Consensus         1 ml~rAv~r~~i~~r~~~~a~~~~~~~~s~~~a~~~~~~~~~hg~et~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDl   80 (149)
T KOG4077|consen    1 MLTRAVTRLAIAGRTLVRARPSTRTPASGLGANTFIKYSMEHGPETAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDL   80 (149)
T ss_pred             ChHHHHHHHHHHhhhHhccccccccccCCccchhhhhhHhhcCcccHHHHHHHHHHHcCcccchHHHHHHHHHhhhcccc
Confidence            6766677666555555542  11111111 22223344455666799999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhCCCCccccCCCCcc
Q psy9569          78 VPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKPE  147 (156)
Q Consensus        78 VPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~EeLgydkpe  147 (156)
                      ||+|+||+|||||||||||||+||||||+||+|||++ +++||||++||||||.||||+||||||++++|
T Consensus        81 VP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~-k~~Y~y~v~elkpvl~ELGI~t~EeLg~~~~~  149 (149)
T KOG4077|consen   81 VPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQ-KQVYPYYVKELKPVLNELGIPTPEELGFPSVE  149 (149)
T ss_pred             CCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccH-HHHHHHHHHHHHHHHHHhCCCCHHHhCCCCCC
Confidence            9999999999999999999999999999999999998 66899999999999999999999999988875

>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []

Probab=83.69  E-value=6.3  Score=26.94  Aligned_cols=53  Identities=26%  Similarity=0.281  Sum_probs=39.7

Q ss_pred             CCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhHHHHHhhhhhhHhhCCC
Q psy9569          78 VPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIE  136 (156)
Q Consensus        78 VPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~  136 (156)
                      +|.|++|+.-++.|.. ++|..+-..++.+... |=.    ...++++|-..+-+..++
T Consensus         2 ~p~~~~i~~i~~~~~~-~~~~~~~~~~~~l~~~-G~s----~~~Il~~l~~~l~~~~~~   54 (89)
T PF08542_consen    2 WPPPEVIEEILESCLN-GDFKEARKKLYELLVE-GYS----ASDILKQLHEVLVESDIP   54 (89)
T ss_dssp             S--HHHHHHHHHHHHH-TCHHHHHHHHHHHHHT-T------HHHHHHHHHHHHHTSTSS
T ss_pred             CCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHHc-CCC----HHHHHHHHHHHHHHhhcc
Confidence            5899999999999988 6999999999999988 544    456677777666665444

PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.

>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun

Probab=81.57  E-value=7.8  Score=28.54  Aligned_cols=63  Identities=16%  Similarity=0.111  Sum_probs=44.9

Q ss_pred             HHHHHHHhhCCC--CCcHHH---HHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhc
Q psy9569          47 FVKRYVAFFNQP--DIDGWD---IRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKT  111 (156)
Q Consensus        47 F~aRy~~~F~~~--~iD~we---~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~  111 (156)
                      .|.--.++-+++  .++.|+   +|=|+..++-.| +|...+|..|...|+..++ +.+-+|.-||=.+.
T Consensus        55 ld~~i~~~l~~~~~~~~~~~~~iLr~a~~el~~~~-~p~~avvneaVelak~~~~-~~~~~fVNaVLr~i  122 (126)
T cd00620          55 LDWIINPLLKKPDVGKDPDVRNLLRLGLYQLLYLD-VPPHAAVDETVEIAKIRKD-LGRAGLVNAVLRRF  122 (126)
T ss_pred             HHHHHHHHhCCCccccCHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhCC-CchhhHHHHHHHHH
Confidence            333333444443  245555   899999999889 9999999999999998865 35667777765543

The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
2y69_E	152	Bovine Heart Cytochrome C Oxidase Re-Refined With M		5e-32
1occ_E	109	Structure Of Bovine Heart Cytochrome C Oxidase At T		2e-30

>pdb|2Y69|E Chain E, Bovine Heart Cytochrome C Oxidase Re-Refined With Molecular Oxygen Length = 152

Iteration: 1
 Score =  133 bits (334), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/113 (53%), Positives = 83/113 (73%), Gaps = 1/113 (0%)
Query: 33  IRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIR 92
           +R +SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A R
Sbjct: 40  LRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACR 99
Query: 93  RVNDYALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           R+ND+A A+R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 100 RLNDFASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 151

>pdb|1OCC|E Chain E, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 109

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
Query: 37  SHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVND 96
           SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A RR+ND
Sbjct: 1   SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLND 60
Query: 97  YALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           +A A+R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 61  FASAVRILEVVKDK-AGPHKEIYPYVIQELRPTLNELGISTPEELGLDK 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	1e-52
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	1e-49

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Length = 152

 Score =  163 bits (412), Expect = 1e-52
 Identities = 66/152 (43%), Positives = 95/152 (62%), Gaps = 8/152 (5%)

Query: 1   MFRALASRLAASSSQVLRQTAVSKVKPL-------TFAPIRSFSHAVEESDEEFVKRYVA 53
           M  A   R + +++ V R +    + P            +R +SH   E+DEEF  R+V 
Sbjct: 1   MLGAAVRRCSVAAAAVARASPRGLLHPTPAPGQAAAVQSLRCYSHGSHETDEEFDARWVT 60

Query: 54  FFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGG 113
           +FN+PDID W++R+G+  L   D VP+P+II AAL+A RR+ND+A A+R LE  + K  G
Sbjct: 61  YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-G 119

Query: 114 SHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
            H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 120 PHKEIYPYVIQELRPTLNELGISTPEELGLDK 151

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... Length = 109

 Score =  153 bits (389), Expect = 1e-49
 Identities = 59/109 (54%), Positives = 80/109 (73%), Gaps = 1/109 (0%)

Query: 37  SHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVND 96
           SH   E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A RR+ND
Sbjct: 1   SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLND 60

Query: 97  YALAIRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           +A A+R LE  + K  G H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 61  FASAVRILEVVKDKA-GPHKEIYPYVIQELRPTLNELGISTPEELGLDK 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	100.0
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	100.0

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=100.00  E-value=5.8e-71  Score=436.36  Aligned_cols=122  Identities=48%  Similarity=0.873  Sum_probs=102.7

Q ss_pred             cCCccccccccccCCCCCCCHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHH
Q psy9569          24 KVKPLTFAPIRSFSHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRF  103 (156)
Q Consensus        24 ~~~~~~~~~~r~~s~h~~Et~eeF~aRy~~~F~~~~iD~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~  103 (156)
                      +...++..++|+||+|++|||||||+||++|||+++||+||+||||||||+|||||+|+||+|||||||||||||+||||
T Consensus        31 ~~~~~~~~~~R~~s~h~~Et~EeFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~  110 (152)
T 2y69_E           31 PGQAAAVQSLRCYSHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRI  110 (152)
T ss_dssp             ------------------CCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccchHHHHHHhhcCCCCCcHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHH
Confidence            34445566789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhcCCCccchhHHHHHhhhhhhHhhCCCCccccCCCCc
Q psy9569         104 LETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDKP  146 (156)
Q Consensus       104 lE~iK~K~~~~~~~iY~~~lqElkPtl~ELGI~t~EeLgydkp  146 (156)
                      ||+||+|||++ ++|||||+|||||||+||||+|||||||||.
T Consensus       111 lE~vK~K~~~~-~~iY~y~lqElkPtl~ELGI~t~EeLg~dk~  152 (152)
T 2y69_E          111 LEVVKDKAGPH-KEIYPYVIQELRPTLNELGISTPEELGLDKV  152 (152)
T ss_dssp             HHHHHHHTTTC-TTHHHHHHHHHHHHHHHHTCCCTTTTTTTCC
T ss_pred             HHHHHHhcCCc-hhhHHHHHHHHhhHHHHhCCCCHHHhCCCcC
Confidence            99999999999 8899999999999999999999999999983

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=100.00  E-value=5.2e-69  Score=406.89  Aligned_cols=109  Identities=53%  Similarity=0.945  Sum_probs=103.5

Q ss_pred             CCCCCCCHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCcc
Q psy9569          37 SHAVEESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHD  116 (156)
Q Consensus        37 s~h~~Et~eeF~aRy~~~F~~~~iD~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~  116 (156)
                      |+|++||+|+|++||++||++++||+||+||||||||+|||||+|+||+|||||||||||||+||||||+||+|||++ +
T Consensus         1 s~h~~et~eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~-~   79 (109)
T 1v54_E            1 SHGSHETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-K   79 (109)
T ss_dssp             ----CCCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-T
T ss_pred             CCCCcccHHHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-h
Confidence            567889999999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             chhHHHHHhhhhhhHhhCCCCccccCCCCc
Q psy9569         117 KIWPYIVQEITPTLKELGIETPAQLGYDKP  146 (156)
Q Consensus       117 ~iY~~~lqElkPtl~ELGI~t~EeLgydkp  146 (156)
                      +|||||+|||||||+||||+|||||||||.
T Consensus        80 ~iY~~~lqElkPtl~ELGI~t~EeLg~dk~  109 (109)
T 1v54_E           80 EIYPYVIQELRPTLNELGISTPEELGLDKV  109 (109)
T ss_dssp             THHHHHHHHHHHHHHHHTCCCTTTTTTTCC
T ss_pred             hhHHHHHHHHhhHHHHhCCCCHHHhCCCcC
Confidence            899999999999999999999999999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1v54e_	105	a.118.11.1 (E:) Cytochrome c oxidase subunit E {Co	1e-54

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} Length = 105

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  165 bits (419), Expect = 1e-54
 Identities = 57/105 (54%), Positives = 78/105 (74%), Gaps = 1/105 (0%)

Query: 41  EESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALA 100
            E+DEEF  R+V +FN+PDID W++R+G+  L   D VP+P+II AAL+A RR+ND+A A
Sbjct: 1   HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASA 60

Query: 101 IRFLETTEFKTGGSHDKIWPYIVQEITPTLKELGIETPAQLGYDK 145
           +R LE  + K G  H +I+PY++QE+ PTL ELGI TP +LG DK
Sbjct: 61  VRILEVVKDKAGP-HKEIYPYVIQELRPTLNELGISTPEELGLDK 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	100.0

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.1e-68  Score=396.76  Aligned_cols=105  Identities=53%  Similarity=0.956  Sum_probs=102.7

Q ss_pred             CCCHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhcCCCccchhH
Q psy9569          41 EESDEEFVKRYVAFFNQPDIDGWDIRRGLMNLAHDDCVPDPEIIIAALKAIRRVNDYALAIRFLETTEFKTGGSHDKIWP  120 (156)
Q Consensus        41 ~Et~eeF~aRy~~~F~~~~iD~we~rrglN~l~~~DlVPeP~Ii~AALrAcRRvND~alAVR~lE~iK~K~~~~~~~iY~  120 (156)
                      +||||+|++||++||++++||+||+||||||||||||||+|+||+|||||||||||||+||||||+||+|||++ ++|||
T Consensus         1 ~Et~EeF~aRy~~~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~-k~~y~   79 (105)
T d1v54e_           1 HETDEEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH-KEIYP   79 (105)
T ss_dssp             CCCHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-TTHHH
T ss_pred             CCcHHHHHHHHHHHhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc-HHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999987 79999


Q ss_pred             HHHHhhhhhhHhhCCCCccccCCCCc
Q psy9569         121 YIVQEITPTLKELGIETPAQLGYDKP  146 (156)
Q Consensus       121 ~~lqElkPtl~ELGI~t~EeLgydkp  146 (156)
                      ||+|||||||+||||+|||||||||.
T Consensus        80 yilqelkptl~ELGI~t~EeLgyDk~  105 (105)
T d1v54e_          80 YVIQELRPTLNELGISTPEELGLDKV  105 (105)
T ss_dssp             HHHHHHHHHHHHHTCCCTTTTTTTCC
T ss_pred             HHHHHHhhHHHHhCCCCHHHhCcCcC
Confidence            99999999999999999999999983