Psyllid ID: psy9577

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----
MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL
ccccccccHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHccccHHHHHHHHcccEEcccEEEEEEEcccccEEEEEEccccEEEEEEEEcccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccccHHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHccccccccEEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEcccccccHHHHccccccccc
ccccccccHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcEEccccEEEEcccccccEEEEEEEccccEEEEEEccccccEEEEEcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHHccEEEEEEcccccHHHHHHcccccccccHHHHHHHHHHHHHHccccEEEEEEEEEccccccHHHHHHHHHHHHccccccccEEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEEccccccHHHHHcccccccc
mtnlldlsplkFVNYCKELGEMPFRAKQLQKWIHKFgvsdfnkmTDLSMSLRKKLKnsvyikaphimsdqisfdgtRKWIFHVKKNIIEtvfipeknrntlcistqvgcaincifcstgrqgfvrNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGmgepllnyKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHAsnnnlrnklvpiskkyplKELILACHRYitysprhmiTFEYCmlhgindtdIHAIELISLMRKNKILTSckinlipfncfpnsnlicsknSRIKIFAKILMNSGIFVTIRKIrgndinaacgqlsgkil
mtnlldlsplKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKaphimsdqisfdgTRKWIFHVKKNIIetvfipeknrNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWvtefklrreknikinsqgkrqitnIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLhasnnnlrnklvpiskkyPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINaacgqlsgkil
MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL
****LDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACG*******
MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREK**K***QGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK**
MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL
*TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSG***
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query354 2.2.26 [Sep-21-2011]
A6SZX3387 Dual-specificity RNA meth yes N/A 0.991 0.906 0.644 1e-142
A4G4J9386 Dual-specificity RNA meth yes N/A 0.963 0.883 0.644 1e-138
B2JIV3382 Dual-specificity RNA meth yes N/A 0.980 0.908 0.567 1e-125
Q2SWE6378 Dual-specificity RNA meth yes N/A 0.985 0.923 0.575 1e-125
B2SXT2383 Dual-specificity RNA meth yes N/A 0.980 0.906 0.572 1e-125
Q63UT5378 Dual-specificity RNA meth yes N/A 0.985 0.923 0.573 1e-125
A3NA56378 Dual-specificity RNA meth yes N/A 0.985 0.923 0.573 1e-125
Q3JRQ1378 Dual-specificity RNA meth yes N/A 0.985 0.923 0.573 1e-125
A3NVX3378 Dual-specificity RNA meth yes N/A 0.985 0.923 0.573 1e-125
A1V4K3378 Dual-specificity RNA meth yes N/A 0.985 0.923 0.573 1e-125
>sp|A6SZX3|RLMN_JANMA Dual-specificity RNA methyltransferase RlmN OS=Janthinobacterium sp. (strain Marseille) GN=rlmN PE=3 SV=1 Back     alignment and function desciption
 Score =  506 bits (1302), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 228/354 (64%), Positives = 284/354 (80%), Gaps = 3/354 (0%)

Query: 1   MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
           +TNLLDL P + + YC ELGE PFRAKQLQ+WIH+FG SDF+ MTDL+ SLR KL     
Sbjct: 4   LTNLLDLDPAQLIAYCGELGEKPFRAKQLQRWIHQFGASDFDAMTDLAKSLRDKLATRAI 63

Query: 61  IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
           I AP ++SD  S DGTRKW+  V + N +ETVFIPE+NR TLCISTQ GCA+NC FCSTG
Sbjct: 64  IAAPAVISDHTSADGTRKWLVDVGQGNAVETVFIPEENRGTLCISTQAGCAVNCRFCSTG 123

Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
           +QGF RNL+VGE+IGQLW+ EF+LRR K I+   +G+RQITN+VMMGMGEPLLNY+ T+ 
Sbjct: 124 KQGFNRNLSVGEVIGQLWMAEFELRRTKGIEPGPKGERQITNVVMMGMGEPLLNYEPTVT 183

Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
           ALKL+L D+AYGLSRR V LSTSG++PMIDKL+Q+C V LAVSLHASN+ LR+ LVP++K
Sbjct: 184 ALKLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQDCAVALAVSLHASNDALRDGLVPLNK 243

Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
           KYPL EL+ AC RY+ ++PR  +TFEYCML G+ND+D HA ELI+L+R+  +   CK NL
Sbjct: 244 KYPLVELMAACKRYLEFAPRDFVTFEYCMLDGVNDSDQHARELIALVRQADV--PCKFNL 301

Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
           IPFN FP S L  S N RIK FA++LM++GI  T+RK RG+DI+AACGQL+G++
Sbjct: 302 IPFNPFPESGLTRSHNPRIKAFAQVLMDAGIVTTVRKTRGDDIDAACGQLAGEV 355
Specifically methylates position 2 of adenine 2503 in 23S rRNA.
Janthinobacterium sp. (strain Marseille) (taxid: 375286)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 2
>sp|A4G4J9|RLMN_HERAR Dual-specificity RNA methyltransferase RlmN OS=Herminiimonas arsenicoxydans GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|B2JIV3|RLMN_BURP8 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|Q2SWE6|RLMN_BURTA Dual-specificity RNA methyltransferase RlmN OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|B2SXT2|RLMN_BURPP Dual-specificity RNA methyltransferase RlmN OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|Q63UT5|RLMN_BURPS Dual-specificity RNA methyltransferase RlmN OS=Burkholderia pseudomallei (strain K96243) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|A3NA56|RLMN_BURP6 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia pseudomallei (strain 668) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|Q3JRQ1|RLMN_BURP1 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia pseudomallei (strain 1710b) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|A3NVX3|RLMN_BURP0 Dual-specificity RNA methyltransferase RlmN OS=Burkholderia pseudomallei (strain 1106a) GN=rlmN PE=3 SV=1 Back     alignment and function description
>sp|A1V4K3|RLMN_BURMS Dual-specificity RNA methyltransferase RlmN OS=Burkholderia mallei (strain SAVP1) GN=rlmN PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query354
409406680390 Fe-S-cluster redox enzyme protein [Herba 0.997 0.905 0.646 1e-143
329912290388 hypothetical protein IMCC9480_747 [Oxalo 0.997 0.909 0.646 1e-142
300312259390 Fe-S-cluster redox enzyme protein [Herba 0.997 0.905 0.638 1e-141
398836190390 23S rRNA methyltransferase [Herbaspirill 0.997 0.905 0.635 1e-141
395763293391 hypothetical protein JPAM2_16292 [Janthi 0.997 0.902 0.641 1e-141
152980879387 hypothetical protein mma_2130 [Janthinob 0.991 0.906 0.644 1e-141
445498333399 ribosomal RNA large subunit methyltransf 0.997 0.884 0.644 1e-141
399018040393 23S rRNA methyltransferase [Herbaspirill 0.997 0.898 0.635 1e-140
427401446389 ribosomal RNA large subunit methyltransf 0.997 0.907 0.641 1e-140
415904117380 Putative Fe-S-cluster redox enzyme [Herb 0.980 0.913 0.643 1e-140
>gi|409406680|ref|ZP_11255142.1| Fe-S-cluster redox enzyme protein [Herbaspirillum sp. GW103] gi|386435229|gb|EIJ48054.1| Fe-S-cluster redox enzyme protein [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 229/354 (64%), Positives = 289/354 (81%), Gaps = 1/354 (0%)

Query: 1   MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVY 60
           +TNLLD+ P + V YC ELGE PFRAKQLQ+WIH+FGVSDF++MTDL+ SLR KLK    
Sbjct: 5   LTNLLDMDPAQLVAYCGELGEKPFRAKQLQRWIHQFGVSDFDQMTDLAKSLRDKLKTRAE 64

Query: 61  IKAPHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTG 119
           ++AP I+SD  S DGTRKW+  V + N +ETVFIPE+NR TLC+STQ GCA+NC FCSTG
Sbjct: 65  VRAPAIISDHTSTDGTRKWLVDVGQGNAVETVFIPEENRGTLCVSTQAGCAVNCRFCSTG 124

Query: 120 RQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIG 179
           +QGF RNLTV EIIGQLW+ EF+LR+ K I+   +G+RQITN+VMMGMGEPLLN+  T+ 
Sbjct: 125 KQGFNRNLTVAEIIGQLWMAEFELRKTKGIEGGPKGERQITNVVMMGMGEPLLNFDPTVT 184

Query: 180 ALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISK 239
           AL+L+L D+AYGLSRR V LSTSG++PMIDKL+QECPV LAVSLHASN+ LR+ L+P+++
Sbjct: 185 ALRLMLDDNAYGLSRRRVTLSTSGVVPMIDKLSQECPVALAVSLHASNDALRDSLIPLNR 244

Query: 240 KYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
           K+PL+EL+LAC RY+ ++PR  ITFEYCML G+NDTD HA EL++L+++ +    CK NL
Sbjct: 245 KHPLRELMLACKRYLEFAPRDFITFEYCMLDGVNDTDTHARELVALVKEGETAIPCKFNL 304

Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
           IPFN FP S L  S N RIK FA+ILM++GI  TIRK RG+DI+AACGQL+G++
Sbjct: 305 IPFNPFPESGLKRSHNPRIKAFAQILMDAGIVTTIRKTRGDDIDAACGQLAGEV 358

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|329912290|ref|ZP_08275720.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium IMCC9480] gi|327545652|gb|EGF30807.1| hypothetical protein IMCC9480_747 [Oxalobacteraceae bacterium IMCC9480] Back     alignment and taxonomy information
>gi|300312259|ref|YP_003776351.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1] gi|300075044|gb|ADJ64443.1| Fe-S-cluster redox enzyme protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|398836190|ref|ZP_10593536.1| 23S rRNA methyltransferase [Herbaspirillum sp. YR522] gi|398213194|gb|EJM99788.1| 23S rRNA methyltransferase [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|395763293|ref|ZP_10443962.1| hypothetical protein JPAM2_16292 [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information
>gi|152980879|ref|YP_001353820.1| hypothetical protein mma_2130 [Janthinobacterium sp. Marseille] gi|205829777|sp|A6SZX3.1|RLMN_JANMA RecName: Full=Dual-specificity RNA methyltransferase RlmN; AltName: Full=23S rRNA (adenine(2503)-C(2))-methyltransferase; AltName: Full=23S rRNA m2A2503 methyltransferase; AltName: Full=Ribosomal RNA large subunit methyltransferase N; AltName: Full=tRNA (adenine(37)-C(2))-methyltransferase; AltName: Full=tRNA m2A37 methyltransferase gi|151280956|gb|ABR89366.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|445498333|ref|ZP_21465188.1| ribosomal RNA large subunit methyltransferase N [Janthinobacterium sp. HH01] gi|444788328|gb|ELX09876.1| ribosomal RNA large subunit methyltransferase N [Janthinobacterium sp. HH01] Back     alignment and taxonomy information
>gi|399018040|ref|ZP_10720226.1| 23S rRNA methyltransferase [Herbaspirillum sp. CF444] gi|398102005|gb|EJL92197.1| 23S rRNA methyltransferase [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|427401446|ref|ZP_18892518.1| ribosomal RNA large subunit methyltransferase N [Massilia timonae CCUG 45783] gi|425719555|gb|EKU82487.1| ribosomal RNA large subunit methyltransferase N [Massilia timonae CCUG 45783] Back     alignment and taxonomy information
>gi|415904117|ref|ZP_11552301.1| Putative Fe-S-cluster redox enzyme [Herbaspirillum frisingense GSF30] gi|407763612|gb|EKF72252.1| Putative Fe-S-cluster redox enzyme [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query354
UNIPROTKB|Q603C0366 rlmN "Dual-specificity RNA met 0.951 0.920 0.511 3.1e-90
UNIPROTKB|Q83C77370 rlmN "Dual-specificity RNA met 0.949 0.908 0.481 6.9e-86
TIGR_CMR|CBU_1252370 CBU_1252 "radical SAM enzyme, 0.949 0.908 0.481 6.9e-86
UNIPROTKB|Q8EC29373 rlmN "Dual-specificity RNA met 0.966 0.916 0.516 4.9e-85
TIGR_CMR|SO_3315373 SO_3315 "conserved hypothetica 0.966 0.916 0.516 4.9e-85
UNIPROTKB|P36979384 rlmN "23S rRNA m2A2503 methylt 0.966 0.890 0.476 3.9e-83
UNIPROTKB|Q47WB7386 rlmN "Dual-specificity RNA met 0.963 0.883 0.491 4.7e-80
TIGR_CMR|CPS_4255386 CPS_4255 "radical SAM enzyme, 0.963 0.883 0.491 4.7e-80
UNIPROTKB|Q9KTX3373 rlmN "Dual-specificity RNA met 0.968 0.919 0.470 1.4e-78
TIGR_CMR|VC_0757373 VC_0757 "conserved hypothetica 0.968 0.919 0.470 1.4e-78
UNIPROTKB|Q603C0 rlmN "Dual-specificity RNA methyltransferase RlmN" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 180/352 (51%), Positives = 239/352 (67%)

Query:     3 NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
             NLLDL       +   LGE PFRA QL +WIH+ GV+DF  MT+LS +LR +L+    I+
Sbjct:    15 NLLDLDREGMEAFFVRLGEKPFRASQLLQWIHQRGVTDFGLMTNLSKTLRSRLEAVSEIR 74

Query:    63 APHIMSDQISFDGTRKWIFHVKK-NIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
              P ++ +Q S DGTRKW+  V   N +ETV IP++ RNTLC+S+QVGC++ C FCST RQ
Sbjct:    75 PPELVLEQRSADGTRKWVLQVDAVNRVETVLIPDEGRNTLCVSSQVGCSLECSFCSTARQ 134

Query:   122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
             GF RNLT  EIIGQLWV + +L  E+          +I+N+V+MGMGEPLLN+ + + A 
Sbjct:   135 GFNRNLTTAEIIGQLWVAQHRLDEEQ----------RISNVVLMGMGEPLLNFGNVVAAT 184

Query:   182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
             +L++ D AYGLS+R V LSTSGI+P +D+LA+   + LAVSLHA ++ LRN+LVPI++KY
Sbjct:   185 RLMMDDFAYGLSKRRVTLSTSGIVPALDRLAEVSDISLAVSLHAPDDTLRNELVPINRKY 244

Query:   242 PLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIP 301
             P++EL+ AC RY+    R  +TFEY ML G+ND   HA  L+ L+         K+NLIP
Sbjct:   245 PIRELLAACKRYVGTENRRKVTFEYVMLDGVNDRPEHARALVRLLSH----VPSKVNLIP 300

Query:   302 FNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKI 353
             FN FPNS   CS    I  FA+ L ++G+  T RK RG DI+AACGQL GK+
Sbjct:   301 FNPFPNSAYRCSHPETIARFAQTLQDAGLITTTRKTRGRDIDAACGQLVGKV 352
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q83C77 rlmN "Dual-specificity RNA methyltransferase RlmN" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1252 CBU_1252 "radical SAM enzyme, Cfr family" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q8EC29 rlmN "Dual-specificity RNA methyltransferase RlmN" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3315 SO_3315 "conserved hypothetical protein TIGR00048" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P36979 rlmN "23S rRNA m2A2503 methyltransferase and tRNA m2A37 methyltransferase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q47WB7 rlmN "Dual-specificity RNA methyltransferase RlmN" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4255 CPS_4255 "radical SAM enzyme, Cfr family" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KTX3 rlmN "Dual-specificity RNA methyltransferase RlmN" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0757 VC_0757 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A3NVX3RLMN_BURP02, ., 1, ., 1, ., 1, 9, 20.57300.98580.9232yesN/A
Q1LLI8RLMN_RALME2, ., 1, ., 1, ., 1, 9, 20.56900.98300.9062yesN/A
Q8Y032RLMN_RALSO2, ., 1, ., 1, ., 1, 9, 20.56770.98020.9060yesN/A
Q46ZI0RLMN_CUPPJ2, ., 1, ., 1, ., 1, 9, 20.57060.98020.9036yesN/A
Q7WHM8RLMN_BORBR2, ., 1, ., 1, ., 1, 9, 20.54340.98020.9083yesN/A
A4G4J9RLMN_HERAR2, ., 1, ., 1, ., 1, 9, 20.64450.96320.8834yesN/A
A1VNF1RLMN_POLNA2, ., 1, ., 1, ., 1, 9, 20.55640.98020.9083yesN/A
Q62JW2RLMN_BURMA2, ., 1, ., 1, ., 1, 9, 20.57300.98580.9232yesN/A
Q63UT5RLMN_BURPS2, ., 1, ., 1, ., 1, 9, 20.57300.98580.9232yesN/A
Q47BR3RLMN_DECAR2, ., 1, ., 1, ., 1, 9, 20.55110.96320.9368yesN/A
A3NA56RLMN_BURP62, ., 1, ., 1, ., 1, 9, 20.57300.98580.9232yesN/A
Q2SWE6RLMN_BURTA2, ., 1, ., 1, ., 1, 9, 20.57580.98580.9232yesN/A
Q7NS85RLMN_CHRVO2, ., 1, ., 1, ., 1, 9, 20.52970.96610.9395yesN/A
Q3JRQ1RLMN_BURP12, ., 1, ., 1, ., 1, 9, 20.57300.98580.9232yesN/A
B2U9U6RLMN_RALPJ2, ., 1, ., 1, ., 1, 9, 20.57060.98020.9060yesN/A
C1DD41RLMN_LARHH2, ., 1, ., 1, ., 1, 9, 20.52120.96610.9344yesN/A
A1K3Y6RLMN_AZOSB2, ., 1, ., 1, ., 1, 9, 20.54620.98020.9253yesN/A
A1V4K3RLMN_BURMS2, ., 1, ., 1, ., 1, 9, 20.57300.98580.9232yesN/A
A2S2A0RLMN_BURM92, ., 1, ., 1, ., 1, 9, 20.57300.98580.9232yesN/A
A0K7T8RLMN_BURCH2, ., 1, ., 1, ., 1, 9, 20.57620.98020.9155yesN/A
Q7VWK8RLMN_BORPE2, ., 1, ., 1, ., 1, 9, 20.54620.98020.9083yesN/A
Q2Y6F3RLMN_NITMU2, ., 1, ., 1, ., 1, 9, 20.54100.97740.9479yesN/A
Q2KY87RLMN_BORA12, ., 1, ., 1, ., 1, 9, 20.55330.98020.9083yesN/A
Q21W25RLMN_RHOFD2, ., 1, ., 1, ., 1, 9, 20.54800.98020.9083yesN/A
Q0BEW5RLMN_BURCM2, ., 1, ., 1, ., 1, 9, 20.57340.98020.9155yesN/A
A1TM24RLMN_ACIAC2, ., 1, ., 1, ., 1, 9, 20.53250.97740.9276yesN/A
Q13X26RLMN_BURXL2, ., 1, ., 1, ., 1, 9, 20.56700.98020.9060yesN/A
Q12AB5RLMN_POLSJ2, ., 1, ., 1, ., 1, 9, 20.55080.98020.9083yesN/A
Q3SL73RLMN_THIDA2, ., 1, ., 1, ., 1, 9, 20.54340.98020.9327yesN/A
A1W574RLMN_ACISJ2, ., 1, ., 1, ., 1, 9, 20.54080.98020.9278yesN/A
B2JIV3RLMN_BURP82, ., 1, ., 1, ., 1, 9, 20.56700.98020.9083yesN/A
A6SZX3RLMN_JANMA2, ., 1, ., 1, ., 1, 9, 20.64400.99150.9069yesN/A
B2SXT2RLMN_BURPP2, ., 1, ., 1, ., 1, 9, 20.57260.98020.9060yesN/A
A1WE19RLMN_VEREI2, ., 1, ., 1, ., 1, 9, 20.53540.97450.8823yesN/A
A9BMV6RLMN_DELAS2, ., 1, ., 1, ., 1, 9, 20.53670.98300.9304yesN/A
A3MK77RLMN_BURM72, ., 1, ., 1, ., 1, 9, 20.57300.98580.9232yesN/A
Q1BGX6RLMN_BURCA2, ., 1, ., 1, ., 1, 9, 20.57620.98020.9155yesN/A
A9IK57RLMN_BORPD2, ., 1, ., 1, ., 1, 9, 20.54210.98020.9107yesN/A
Q1H0U6RLMN_METFK2, ., 1, ., 1, ., 1, 9, 20.53690.96320.9419yesN/A
B1YR46RLMN_BURA42, ., 1, ., 1, ., 1, 9, 20.57340.98020.9155yesN/A
B1JT94RLMN_BURCC2, ., 1, ., 1, ., 1, 9, 20.57620.98020.9155yesN/A
B4EAX1RLMN_BURCJ2, ., 1, ., 1, ., 1, 9, 20.57620.98020.9155yesN/A
A4SYE2RLMN_POLSQ2, ., 1, ., 1, ., 1, 9, 20.55520.98300.8656yesN/A
Q0K959RLMN_CUPNH2, ., 1, ., 1, ., 1, 9, 20.56770.98020.9036yesN/A
A4JEP2RLMN_BURVG2, ., 1, ., 1, ., 1, 9, 20.57340.98020.9155yesN/A
A2SHB8RLMN_METPP2, ., 1, ., 1, ., 1, 9, 20.51540.98020.8807yesN/A
A1KUD6RLMN_NEIMF2, ., 1, ., 1, ., 1, 9, 20.53820.96610.9395yesN/A
Q39FQ7RLMN_BURS32, ., 1, ., 1, ., 1, 9, 20.57620.98020.9155yesN/A
Q7W6P5RLMN_BORPA2, ., 1, ., 1, ., 1, 9, 20.54060.98020.9083yesN/A
B1XXL6RLMN_LEPCP2, ., 1, ., 1, ., 1, 9, 20.51380.99150.8931yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
PRK11194372 PRK11194, PRK11194, ribosomal RNA large subunit me 1e-146
COG0820349 COG0820, COG0820, Predicted Fe-S-cluster redox enz 1e-140
TIGR00048355 TIGR00048, TIGR00048, 23S rRNA m2A2503 methyltrans 1e-125
PRK14454342 PRK14454, PRK14454, ribosomal RNA large subunit me 1e-108
PRK14463349 PRK14463, PRK14463, ribosomal RNA large subunit me 1e-100
PRK14460354 PRK14460, PRK14460, ribosomal RNA large subunit me 1e-96
PRK14469343 PRK14469, PRK14469, ribosomal RNA large subunit me 1e-92
PRK14467348 PRK14467, PRK14467, ribosomal RNA large subunit me 2e-91
PRK14457345 PRK14457, PRK14457, ribosomal RNA large subunit me 8e-90
PRK14459373 PRK14459, PRK14459, ribosomal RNA large subunit me 2e-89
PRK14455356 PRK14455, PRK14455, ribosomal RNA large subunit me 2e-87
PRK14468343 PRK14468, PRK14468, ribosomal RNA large subunit me 1e-86
PRK14461371 PRK14461, PRK14461, ribosomal RNA large subunit me 1e-86
PRK14466345 PRK14466, PRK14466, ribosomal RNA large subunit me 2e-85
PRK14462356 PRK14462, PRK14462, ribosomal RNA large subunit me 6e-84
PRK14456368 PRK14456, PRK14456, ribosomal RNA large subunit me 2e-75
PRK14453347 PRK14453, PRK14453, chloramphenicol/florfenicol re 7e-60
PRK14465342 PRK14465, PRK14465, ribosomal RNA large subunit me 4e-55
PRK14470336 PRK14470, PRK14470, ribosomal RNA large subunit me 4e-42
PRK14464344 PRK14464, PRK14464, ribosomal RNA large subunit me 5e-39
pfam04055165 pfam04055, Radical_SAM, Radical SAM superfamily 5e-11
cd01335204 cd01335, Radical_SAM, Radical SAM superfamily 2e-06
>gnl|CDD|183031 PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information 
 Score =  417 bits (1073), Expect = e-146
 Identities = 174/356 (48%), Positives = 236/356 (66%), Gaps = 13/356 (3%)

Query: 2   TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
            NLLDL+  +   +  ELGE PFRA Q+ KWI+ +G  DF++MT+++  LR+KLK    I
Sbjct: 6   INLLDLNRQQMREFFAELGEKPFRADQVMKWIYHYGCDDFDEMTNINKVLREKLKEVAEI 65

Query: 62  KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
           +AP +  +Q S DGT KW   V    +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 66  RAPEVAEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 125

Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKI-NSQGKRQITNIVMMGMGEPLLNYKSTIGA 180
           GF RNL V EIIGQ+W      R  K I      G+R ITN+VMMGMGEPLLN  + + A
Sbjct: 126 GFNRNLRVSEIIGQVW------RAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPA 179

Query: 181 LKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK 240
           ++++L D  +GLS+R V LSTSG++P +DKL     V LA+SLHA N+ LR+++VPI+KK
Sbjct: 180 MEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDELRDEIVPINKK 239

Query: 241 YPLKELILACHRYITYSP--RHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKIN 298
           Y ++  + A  RY+  S   +  +T EY ML  +ND   HA +L  L++     T CKIN
Sbjct: 240 YNIETFLAAVRRYLEKSNANQGRVTVEYVMLDHVNDGTEHAHQLAELLKD----TPCKIN 295

Query: 299 LIPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
           LIP+N FP +    S NSRI  F+K+LM  G  V +RK RG+DI+AACGQL+G ++
Sbjct: 296 LIPWNPFPGAPYGRSSNSRIDRFSKVLMEYGFTVIVRKTRGDDIDAACGQLAGDVI 351

Length = 372
>gnl|CDD|223890 COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only] Back     alignment and domain information
>gnl|CDD|232798 TIGR00048, TIGR00048, 23S rRNA m2A2503 methyltransferase Back     alignment and domain information
>gnl|CDD|184686 PRK14454, PRK14454, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237720 PRK14463, PRK14463, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172935 PRK14460, PRK14460, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172944 PRK14469, PRK14469, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184693 PRK14467, PRK14467, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184688 PRK14457, PRK14457, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184689 PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237717 PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184694 PRK14468, PRK14468, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237718 PRK14461, PRK14461, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237721 PRK14466, PRK14466, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|237719 PRK14462, PRK14462, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172932 PRK14456, PRK14456, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184685 PRK14453, PRK14453, chloramphenicol/florfenicol resistance protein; Provisional Back     alignment and domain information
>gnl|CDD|172940 PRK14465, PRK14465, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|172945 PRK14470, PRK14470, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|184691 PRK14464, PRK14464, ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>gnl|CDD|217866 pfam04055, Radical_SAM, Radical SAM superfamily Back     alignment and domain information
>gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 354
PRK14461371 ribosomal RNA large subunit methyltransferase N; P 100.0
COG0820349 Predicted Fe-S-cluster redox enzyme [General funct 100.0
PRK14459373 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK11194372 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14465342 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14466345 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14462356 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14467348 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14454342 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14457345 ribosomal RNA large subunit methyltransferase N; P 100.0
TIGR00048355 radical SAM enzyme, Cfr family. A Staphylococcus s 100.0
PRK14460354 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14455356 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14456368 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14463349 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14470336 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14453347 chloramphenicol/florfenicol resistance protein; Pr 100.0
PRK14464344 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14468343 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK14469343 ribosomal RNA large subunit methyltransferase N; P 100.0
PRK11145246 pflA pyruvate formate lyase-activating enzyme 1; P 99.97
PRK10076213 pyruvate formate lyase II activase; Provisional 99.97
TIGR01290 442 nifB nitrogenase cofactor biosynthesis protein Nif 99.96
COG1180260 PflA Pyruvate-formate lyase-activating enzyme [Pos 99.94
TIGR02493235 PFLA pyruvate formate-lyase 1-activating enzyme. A 99.94
PRK00164331 moaA molybdenum cofactor biosynthesis protein A; R 99.92
PRK13762322 tRNA-modifying enzyme; Provisional 99.91
TIGR02494295 PFLE_PFLC glycyl-radical enzyme activating protein 99.9
TIGR03821321 AblA_like_1 lysine-2,3-aminomutase-related protein 99.88
COG2896322 MoaA Molybdenum cofactor biosynthesis enzyme [Coen 99.88
PLN02951373 Molybderin biosynthesis protein CNX2 99.87
COG0731296 Fe-S oxidoreductases [Energy production and conver 99.85
TIGR03278 404 methan_mark_10 putative methanogenesis marker prot 99.84
TIGR02668302 moaA_archaeal probable molybdenum cofactor biosynt 99.84
PRK13361329 molybdenum cofactor biosynthesis protein A; Provis 99.82
TIGR02666334 moaA molybdenum cofactor biosynthesis protein A, b 99.81
TIGR02495191 NrdG2 anaerobic ribonucleoside-triphosphate reduct 99.79
COG2100414 Predicted Fe-S oxidoreductase [General function pr 99.73
PRK05301 378 pyrroloquinoline quinone biosynthesis protein PqqE 99.66
smart00729216 Elp3 Elongator protein 3, MiaB family, Radical SAM 99.66
TIGR02109 358 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. 99.64
TIGR03470318 HpnH hopanoid biosynthesis associated radical SAM 99.63
TIGR00238331 KamA family protein. Note that the E. coli homolog 99.58
PF04055166 Radical_SAM: Radical SAM superfamily; InterPro: IP 99.56
TIGR03822321 AblA_like_2 lysine-2,3-aminomutase-related protein 99.55
cd01335204 Radical_SAM Radical SAM superfamily. Enzymes of th 99.52
TIGR03365238 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosyn 99.46
TIGR03820417 lys_2_3_AblA lysine-2,3-aminomutase. This model de 99.44
PRK13758 370 anaerobic sulfatase-maturase; Provisional 99.44
COG0535347 Predicted Fe-S oxidoreductases [General function p 99.41
PRK09240371 thiH thiamine biosynthesis protein ThiH; Reviewed 99.4
PRK07094323 biotin synthase; Provisional 99.39
COG5014228 Predicted Fe-S oxidoreductase [General function pr 99.37
TIGR02491154 NrdG anaerobic ribonucleoside-triphosphate reducta 99.35
PRK13745 412 anaerobic sulfatase-maturase; Provisional 99.29
PRK06256336 biotin synthase; Validated 99.27
TIGR00433296 bioB biotin synthetase. Catalyzes the last step of 99.23
PRK08508279 biotin synthase; Provisional 99.21
TIGR01125430 MiaB-like tRNA modifying enzyme YliG, TIGR01125. T 99.21
COG1509369 KamA Lysine 2,3-aminomutase [Amino acid transport 99.17
PF13394119 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 99.17
COG1313335 PflX Uncharacterized Fe-S protein PflX, homolog of 99.17
TIGR02351366 thiH thiazole biosynthesis protein ThiH. Members t 99.14
PRK14338459 (dimethylallyl)adenosine tRNA methylthiotransferas 99.13
KOG2876|consensus323 99.11
TIGR02826147 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosph 99.1
PRK14862440 rimO ribosomal protein S12 methylthiotransferase; 99.07
COG0641 378 AslB Arylsulfatase regulator (Fe-S oxidoreductase) 99.06
TIGR00089429 RNA modification enzyme, MiaB family. This subfami 99.05
PLN02389379 biotin synthase 99.03
PRK15108345 biotin synthase; Provisional 99.03
PF13353139 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 99.03
TIGR00423309 radical SAM domain protein, CofH subfamily. This p 99.02
TIGR03551343 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav 99.02
COG0602212 NrdG Organic radical activating enzymes [Posttrans 99.01
TIGR01579414 MiaB-like-C MiaB-like tRNA modifying enzyme. This 98.97
TIGR03699340 mena_SCO4550 menaquinone biosynthesis protein, SCO 98.97
PRK05481289 lipoyl synthase; Provisional 98.97
PRK14334440 (dimethylallyl)adenosine tRNA methylthiotransferas 98.93
PRK06245336 cofG FO synthase subunit 1; Reviewed 98.92
PRK14332449 (dimethylallyl)adenosine tRNA methylthiotransferas 98.91
PRK14326 502 (dimethylallyl)adenosine tRNA methylthiotransferas 98.91
TIGR03471472 HpnJ hopanoid biosynthesis associated radical SAM 98.88
TIGR01578420 MiaB-like-B MiaB-like tRNA modifying enzyme, archa 98.88
PRK14330434 (dimethylallyl)adenosine tRNA methylthiotransferas 98.87
PRK14328439 (dimethylallyl)adenosine tRNA methylthiotransferas 98.86
TIGR02026497 BchE magnesium-protoporphyrin IX monomethyl ester 98.85
PRK14331437 (dimethylallyl)adenosine tRNA methylthiotransferas 98.85
PRK14336418 (dimethylallyl)adenosine tRNA methylthiotransferas 98.84
PRK14327509 (dimethylallyl)adenosine tRNA methylthiotransferas 98.84
PRK08446 350 coproporphyrinogen III oxidase; Provisional 98.84
PRK14339420 (dimethylallyl)adenosine tRNA methylthiotransferas 98.82
PRK14325444 (dimethylallyl)adenosine tRNA methylthiotransferas 98.82
PRK14337446 (dimethylallyl)adenosine tRNA methylthiotransferas 98.82
TIGR01574438 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3 98.81
PRK05799 374 coproporphyrinogen III oxidase; Provisional 98.81
PRK11121154 nrdG anaerobic ribonucleotide reductase-activating 98.79
PRK14340445 (dimethylallyl)adenosine tRNA methylthiotransferas 98.78
COG1625 414 Fe-S oxidoreductase, related to NifB/MoaA family [ 98.77
TIGR00539 360 hemN_rel putative oxygen-independent coproporphyri 98.77
PRK05660 378 HemN family oxidoreductase; Provisional 98.77
PRK06267350 hypothetical protein; Provisional 98.76
PRK12928290 lipoyl synthase; Provisional 98.74
PRK14333448 (dimethylallyl)adenosine tRNA methylthiotransferas 98.73
PRK08207488 coproporphyrinogen III oxidase; Provisional 98.73
TIGR01212302 radical SAM protein, TIGR01212 family. This unchar 98.72
PRK14329467 (dimethylallyl)adenosine tRNA methylthiotransferas 98.71
PRK09249 453 coproporphyrinogen III oxidase; Provisional 98.7
TIGR00538 455 hemN oxygen-independent coproporphyrinogen III oxi 98.67
COG0621437 MiaB 2-methylthioadenine synthetase [Translation, 98.67
PRK14335455 (dimethylallyl)adenosine tRNA methylthiotransferas 98.66
PRK08208 430 coproporphyrinogen III oxidase; Validated 98.65
TIGR03700351 mena_SCO4494 putative menaquinone biosynthesis pro 98.65
PRK05628 375 coproporphyrinogen III oxidase; Validated 98.64
PRK08599 377 coproporphyrinogen III oxidase; Provisional 98.62
PRK13347 453 coproporphyrinogen III oxidase; Provisional 98.61
TIGR00510302 lipA lipoate synthase. The family shows strong seq 98.6
TIGR03279 433 cyano_FeS_chp putative FeS-containing Cyanobacteri 98.55
TIGR03550322 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav 98.5
PRK08445348 hypothetical protein; Provisional 98.46
PLN02428349 lipoic acid synthase 98.41
PRK08444353 hypothetical protein; Provisional 98.38
TIGR01210313 conserved hypothetical protein TIGR01210. This fam 98.36
PRK07360371 FO synthase subunit 2; Reviewed 98.36
COG2108353 Uncharacterized conserved protein related to pyruv 98.3
COG0502335 BioB Biotin synthase and related enzymes [Coenzyme 98.29
COG1533297 SplB DNA repair photolyase [DNA replication, recom 98.29
PRK00955620 hypothetical protein; Provisional 98.27
PRK06294 370 coproporphyrinogen III oxidase; Provisional 98.23
PRK07379 400 coproporphyrinogen III oxidase; Provisional 98.22
COG1964 475 Predicted Fe-S oxidoreductases [General function p 98.18
PRK08898 394 coproporphyrinogen III oxidase; Provisional 98.14
PRK09057 380 coproporphyrinogen III oxidase; Provisional 98.14
PRK01254707 hypothetical protein; Provisional 98.12
PRK09058 449 coproporphyrinogen III oxidase; Provisional 98.1
COG1032490 Fe-S oxidoreductase [Energy production and convers 98.09
PRK09613 469 thiH thiamine biosynthesis protein ThiH; Reviewed 98.08
PRK06582 390 coproporphyrinogen III oxidase; Provisional 98.07
PRK05927350 hypothetical protein; Provisional 98.07
PRK05904 353 coproporphyrinogen III oxidase; Provisional 98.02
PRK08629 433 coproporphyrinogen III oxidase; Provisional 97.94
PRK05926370 hypothetical protein; Provisional 97.94
PRK09234843 fbiC FO synthase; Reviewed 97.8
PTZ00413398 lipoate synthase; Provisional 97.8
COG1856275 Uncharacterized homolog of biotin synthetase [Func 97.47
TIGR01211 522 ELP3 histone acetyltransferase, ELP3 family. The S 97.47
COG0635 416 HemN Coproporphyrinogen III oxidase and related Fe 97.05
PRK09234 843 fbiC FO synthase; Reviewed 96.95
COG1060370 ThiH Thiamine biosynthesis enzyme ThiH and related 96.08
COG1243 515 ELP3 Histone acetyltransferase [Transcription / Ch 95.89
COG2516339 Biotin synthase-related enzyme [General function p 95.39
KOG1160|consensus601 95.3
COG1244358 Predicted Fe-S oxidoreductase [General function pr 95.22
COG1031 560 Uncharacterized Fe-S oxidoreductase [Energy produc 94.78
COG0320306 LipA Lipoate synthase [Coenzyme metabolism] 92.84
COG4277404 Predicted DNA-binding protein with the Helix-hairp 90.5
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 90.27
KOG2672|consensus360 89.76
KOG2900|consensus380 87.92
COG1242312 Predicted Fe-S oxidoreductase [General function pr 86.6
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.6e-109  Score=798.18  Aligned_cols=351  Identities=36%  Similarity=0.617  Sum_probs=324.9

Q ss_pred             CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCC-ceeE
Q psy9577           1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDG-TRKW   79 (354)
Q Consensus         1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dg-t~k~   79 (354)
                      +.+|++|+++||++++.++|+|+|||+|||+|+|++++.||++||||||++|++|+++|.+..+++++.+.|.|| |+||
T Consensus         7 ~~~l~~l~~~el~~~~~~~g~~~fRa~Qi~~wiy~~~~~~~~~mtnlpk~lR~~L~~~~~i~~l~~~~~~~S~Dg~T~K~   86 (371)
T PRK14461          7 QRNLYDLNLAELTELLTAWGQPAFRARQLYRHLYVNLADSVLAMTDLPLALRERLTAELPLSTLRLEQVQIGDNGLTRKA   86 (371)
T ss_pred             CcCcccCCHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCHHHccccCHHHHHHHhhccccCCcceEEEEECCCCCeEEE
Confidence            357999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             EEecC-CceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCc-cc-CCcCc
Q psy9577          80 IFHVK-KNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNI-KI-NSQGK  156 (354)
Q Consensus        80 l~~~~-g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~-~~-~~~gg  156 (354)
                      ||++. |..||||+||+.+|+|+|||||+||+|+|.||+||++|+.||||++||++||+.+.+.++..+.. +. +.+..
T Consensus        87 L~~l~DG~~IEtVli~~~~r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~  166 (371)
T PRK14461         87 LFRLPDGAVVETVLMIYPDRATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPV  166 (371)
T ss_pred             EEEcCCCCEEEEEEEecCCCceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhccccccccccccc
Confidence            99999 99999999999999999999999999999999999999999999999999999887765431000 00 00001


Q ss_pred             eeEEeeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcC-cceeEEeeccCcccccccce
Q psy9577         157 RQITNIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQEC-PVELAVSLHASNNNLRNKLV  235 (354)
Q Consensus       157 ~~i~~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~-~~~LaiSL~a~~~e~r~~l~  235 (354)
                      .+|+|||||||||||+|||+|++++++|+++.|++||.|||||||+|++|.|++|+++. +++|||||||+++++|++||
T Consensus       167 ~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~R~~lm  246 (371)
T PRK14461        167 GRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDALRSELM  246 (371)
T ss_pred             CceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHHHHHhc
Confidence            36999999999999999999999999999999999999999999999999999999874 78999999999999999999


Q ss_pred             eCCCcCchHHHHHHHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhcCcc--ccceeeeeeeCCCCCCCCcccc
Q psy9577         236 PISKKYPLKELILACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKI--LTSCKINLIPFNCFPNSNLICS  313 (354)
Q Consensus       236 p~~~~~~l~~il~~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~--~~~~~vnLIp~n~~~~~~~~~p  313 (354)
                      |+|++|++++|++++++|.+.+ +++|+|||+||+|+||+++||++|++++++.+.  .++++||||||||+++..|++|
T Consensus       247 Pin~~ypl~eLl~a~~~y~~~t-~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~p  325 (371)
T PRK14461        247 PVNRRYPIADLMAATRDYIAKT-RRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRS  325 (371)
T ss_pred             CcccCCCHHHHHHHHHHHHHhh-CCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCC
Confidence            9999999999999999999888 579999999999999999999999999998210  0179999999999999999999


Q ss_pred             cchhHHHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577         314 KNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK  352 (354)
Q Consensus       314 ~~e~l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~  352 (354)
                      +.+++++|+++|.++|++|++|+++|+||+||||||+.+
T Consensus       326 s~~~i~~F~~~L~~~gi~vtiR~s~G~DI~AACGQL~~~  364 (371)
T PRK14461        326 ERERVTTFQRILTDYGIPCTVRVERGVEIAAACGQLAGR  364 (371)
T ss_pred             CHHHHHHHHHHHHHCCceEEEeCCCCcChhhcCcccccC
Confidence            999999999999999999999999999999999999875

>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only] Back     alignment and domain information
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>TIGR00048 radical SAM enzyme, Cfr family Back     alignment and domain information
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional Back     alignment and domain information
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional Back     alignment and domain information
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional Back     alignment and domain information
>PRK10076 pyruvate formate lyase II activase; Provisional Back     alignment and domain information
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB Back     alignment and domain information
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme Back     alignment and domain information
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed Back     alignment and domain information
>PRK13762 tRNA-modifying enzyme; Provisional Back     alignment and domain information
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family Back     alignment and domain information
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism] Back     alignment and domain information
>PLN02951 Molybderin biosynthesis protein CNX2 Back     alignment and domain information
>COG0731 Fe-S oxidoreductases [Energy production and conversion] Back     alignment and domain information
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 Back     alignment and domain information
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal Back     alignment and domain information
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional Back     alignment and domain information
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial Back     alignment and domain information
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional Back     alignment and domain information
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM Back     alignment and domain information
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E Back     alignment and domain information
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH Back     alignment and domain information
>TIGR00238 KamA family protein Back     alignment and domain information
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation Back     alignment and domain information
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein Back     alignment and domain information
>cd01335 Radical_SAM Radical SAM superfamily Back     alignment and domain information
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE Back     alignment and domain information
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase Back     alignment and domain information
>PRK13758 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>PRK07094 biotin synthase; Provisional Back     alignment and domain information
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PRK13745 anaerobic sulfatase-maturase; Provisional Back     alignment and domain information
>PRK06256 biotin synthase; Validated Back     alignment and domain information
>TIGR00433 bioB biotin synthetase Back     alignment and domain information
>PRK08508 biotin synthase; Provisional Back     alignment and domain information
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125 Back     alignment and domain information
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism] Back     alignment and domain information
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A Back     alignment and domain information
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only] Back     alignment and domain information
>TIGR02351 thiH thiazole biosynthesis protein ThiH Back     alignment and domain information
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>KOG2876|consensus Back     alignment and domain information
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein Back     alignment and domain information
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional Back     alignment and domain information
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only] Back     alignment and domain information
>TIGR00089 RNA modification enzyme, MiaB family Back     alignment and domain information
>PLN02389 biotin synthase Back     alignment and domain information
>PRK15108 biotin synthase; Provisional Back     alignment and domain information
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A Back     alignment and domain information
>TIGR00423 radical SAM domain protein, CofH subfamily Back     alignment and domain information
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit Back     alignment and domain information
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme Back     alignment and domain information
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family Back     alignment and domain information
>PRK05481 lipoyl synthase; Provisional Back     alignment and domain information
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK06245 cofG FO synthase subunit 1; Reviewed Back     alignment and domain information
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ Back     alignment and domain information
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type Back     alignment and domain information
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase Back     alignment and domain information
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK08446 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB Back     alignment and domain information
>PRK05799 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional Back     alignment and domain information
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion] Back     alignment and domain information
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>PRK05660 HemN family oxidoreductase; Provisional Back     alignment and domain information
>PRK06267 hypothetical protein; Provisional Back     alignment and domain information
>PRK12928 lipoyl synthase; Provisional Back     alignment and domain information
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK08207 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR01212 radical SAM protein, TIGR01212 family Back     alignment and domain information
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK09249 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase Back     alignment and domain information
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional Back     alignment and domain information
>PRK08208 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family Back     alignment and domain information
>PRK05628 coproporphyrinogen III oxidase; Validated Back     alignment and domain information
>PRK08599 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK13347 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>TIGR00510 lipA lipoate synthase Back     alignment and domain information
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase Back     alignment and domain information
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit Back     alignment and domain information
>PRK08445 hypothetical protein; Provisional Back     alignment and domain information
>PLN02428 lipoic acid synthase Back     alignment and domain information
>PRK08444 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01210 conserved hypothetical protein TIGR01210 Back     alignment and domain information
>PRK07360 FO synthase subunit 2; Reviewed Back     alignment and domain information
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] Back     alignment and domain information
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] Back     alignment and domain information
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00955 hypothetical protein; Provisional Back     alignment and domain information
>PRK06294 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK07379 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only] Back     alignment and domain information
>PRK08898 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK09057 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK01254 hypothetical protein; Provisional Back     alignment and domain information
>PRK09058 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>COG1032 Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed Back     alignment and domain information
>PRK06582 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK05927 hypothetical protein; Provisional Back     alignment and domain information
>PRK05904 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK08629 coproporphyrinogen III oxidase; Provisional Back     alignment and domain information
>PRK05926 hypothetical protein; Provisional Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>PTZ00413 lipoate synthase; Provisional Back     alignment and domain information
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] Back     alignment and domain information
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family Back     alignment and domain information
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] Back     alignment and domain information
>PRK09234 fbiC FO synthase; Reviewed Back     alignment and domain information
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] Back     alignment and domain information
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics] Back     alignment and domain information
>COG2516 Biotin synthase-related enzyme [General function prediction only] Back     alignment and domain information
>KOG1160|consensus Back     alignment and domain information
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion] Back     alignment and domain information
>COG0320 LipA Lipoate synthase [Coenzyme metabolism] Back     alignment and domain information
>COG4277 Predicted DNA-binding protein with the Helix-hairpin-helix motif [General function prediction only] Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>KOG2672|consensus Back     alignment and domain information
>KOG2900|consensus Back     alignment and domain information
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
3rf9_A404 X-Ray Structure Of Rlmn From Escherichia Coli Lengt 1e-94
3rfa_A404 X-Ray Structure Of Rlmn From Escherichia Coli In Co 1e-93
>pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli Length = 404 Back     alignment and structure 
Iteration: 1

 Score =  343 bits (879), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 169/355 (47%), Positives = 236/355 (66%), Gaps = 13/355 (3%)
Query: 3   NLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIK 62
           NLLDL+  +   + K+LGE PFRA Q+ KW++ +   +F++MTD++  LR KLK    I+
Sbjct: 19  NLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIR 78
Query: 63  APHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQG 122
           AP ++ +Q S DGT KW   V    +ETV+IPE +R TLC+S+QVGCA+ C FCST +QG
Sbjct: 79  APEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQG 138
Query: 123 FVRNLTVGEIIGQLWVTEFKLRREKNI-KINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
           F RNL V EIIGQ+W      R  K +      G+R ITN+VMMGMGEPLLN  + + A+
Sbjct: 139 FNRNLRVSEIIGQVW------RAAKIVGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAM 192
Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
           +++L D  +GLS+R V LSTSG++P +DKL     V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252
Query: 242 PLKELILACHRYITYSPRHM--ITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
            ++  + A  RY+  S  +   +T EY ML  +ND   HA +L  L++     T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308
Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
           IP+N FP +    S NSRI  F+K+LM+ G    +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex With S- Adenosylmethionine Length = 404 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query354
3rfa_A404 Ribosomal RNA large subunit methyltransferase N; r 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* Length = 404 Back     alignment and structure
 Score =  521 bits (1344), Expect = 0.0
 Identities = 167/355 (47%), Positives = 236/355 (66%), Gaps = 11/355 (3%)

Query: 2   TNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYI 61
            NLLDL+  +   + K+LGE PFRA Q+ KW++ +   +F++MTD++  LR KLK    I
Sbjct: 18  INLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEI 77

Query: 62  KAPHIMSDQISFDGTRKWIFHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQ 121
           +AP ++ +Q S DGT KW   V    +ETV+IPE +R TLC+S+QVGCA+ C FCST +Q
Sbjct: 78  RAPEVVEEQRSSDGTIKWAIAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQ 137

Query: 122 GFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEPLLNYKSTIGAL 181
           GF RNL V EIIGQ+W     +   K       G+R ITN+VMMGMGEPLLN  + + A+
Sbjct: 138 GFNRNLRVSEIIGQVWRAAKIVGAAK-----VTGQRPITNVVMMGMGEPLLNLNNVVPAM 192

Query: 182 KLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKKY 241
           +++L D  +GLS+R V LSTSG++P +DKL     V LA+SLHA N+ +R+++VPI+KKY
Sbjct: 193 EIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKKY 252

Query: 242 PLKELILACHRYI--TYSPRHMITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINL 299
            ++  + A  RY+  + + +  +T EY ML  +ND   HA +L  L++     T CKINL
Sbjct: 253 NIETFLAAVRRYLEKSNANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINL 308

Query: 300 IPFNCFPNSNLICSKNSRIKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGKIL 354
           IP+N FP +    S NSRI  F+K+LM+ G    +RK RG+DI+AACGQL+G ++
Sbjct: 309 IPWNPFPGAPYGRSSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVI 363
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query354
3rfa_A404 Ribosomal RNA large subunit methyltransferase N; r 100.0
2yx0_A342 Radical SAM enzyme; predicted tRNA modification en 99.97
2z2u_A311 UPF0026 protein MJ0257; metal binding protein; 2.4 99.95
3c8f_A245 Pyruvate formate-lyase 1-activating enzyme; adoMet 99.94
3can_A182 Pyruvate-formate lyase-activating enzyme; structur 99.87
1tv8_A340 MOAA, molybdenum cofactor biosynthesis protein A; 99.79
3t7v_A350 Methylornithine synthase PYLB; TIM-barrel fold, mu 99.76
2a5h_A416 L-lysine 2,3-aminomutase; radical SAM, four-iron-f 99.76
3iix_A348 Biotin synthetase, putative; adoMet radical, SAM r 99.75
1r30_A369 Biotin synthase; SAM radical protein, TIM barrel, 99.56
2qgq_A304 Protein TM_1862; alpha-beta protein, structural ge 99.48
1olt_A 457 Oxygen-independent coproporphyrinogen III oxidase; 99.1
4fhd_A368 Spore photoproduct lyase; partial TIM-barrel, DNA 97.83
1hfe_L 421 Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg 91.99
>3rfa_A Ribosomal RNA large subunit methyltransferase N; radical SAM, S-adenosylmethionine, iron sulfur cluster, oxidoreductase; HET: SAM; 2.05A {Escherichia coli} PDB: 3rf9_A* Back     alignment and structure
Probab=100.00  E-value=3.3e-95  Score=719.32  Aligned_cols=342  Identities=49%  Similarity=0.852  Sum_probs=310.7

Q ss_pred             CcccCCCChhHHHHHHHHhCCCccchHHHHHHHHHhCcCcchhhhhhHHHHHHhhhceeeeecCcccccccccCCceeEE
Q psy9577           1 MTNLLDLSPLKFVNYCKELGEMPFRAKQLQKWIHKFGVSDFNKMTDLSMSLRKKLKNSVYIKAPHIMSDQISFDGTRKWI   80 (354)
Q Consensus         1 ~~~~~~~~~~~l~~~~~~~g~~~~r~~qi~~~~~~~~~~~~~~~~~l~~~~r~~l~~~~~~~~~~~~~~~~s~dgt~k~l   80 (354)
                      +.+|++|+++||++++.++|+|+|||+|||+|||++++.||++||||||++|++|++.|.+..++++..+.|.|||+|||
T Consensus        17 ~~~l~~~~~~~l~~~~~~~g~~~fra~qi~~w~~~~~~~~~~~mt~l~k~~r~~l~~~~~~~~~~~~~~~~s~dgt~K~l   96 (404)
T 3rfa_A           17 KINLLDLNRQQMREFFKDLGEKPFRADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWA   96 (404)
T ss_dssp             CEEGGGCCHHHHHHHHHHTTCCHHHHHHHHHHHHHSCCCCGGGCTTSCHHHHHHHHHHEECCCCEEEEEEECTTSCEEEE
T ss_pred             CCCcccCCHHHHHHHHHHcCCcchHHHHHHHHHHhcCCCChHHhcccCHHHHHHHHhcCCCCCCceEEEEECCCCCEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCceeEEEeeecCCCceeEEeccccceEeeeeecCCCCcccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEE
Q psy9577          81 FHVKKNIIETVFIPEKNRNTLCISTQVGCAINCIFCSTGRQGFVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQIT  160 (354)
Q Consensus        81 ~~~~g~~iE~v~i~~~~r~tlcvSsq~GC~~~C~fC~tg~~g~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~  160 (354)
                      |+++|+.||||+||+++|.|+|||+|+||||+|.||+++.+++.|+||++||++|+..+..+++.++     .+|+.+++
T Consensus        97 ~~ldg~~iEtV~i~~~~r~tlcVSsq~GCnl~C~fC~tg~~g~~r~Lt~eEIv~qv~~~~~~~~~~g-----~~gg~~i~  171 (404)
T 3rfa_A           97 IAVGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVGAAK-----VTGQRPIT  171 (404)
T ss_dssp             EEETTEEEEEEEEECSSCEEEECCCEEECSSCCTTCGGGTTCEEEECCHHHHHHHHHHHHHHHCCHH-----HHSSCSCS
T ss_pred             EEcCCceEEEEEEecCCCceEEEEeCCCCCCcCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhhhcc-----cccCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999998887764320     01345799


Q ss_pred             eeeeeccCccccccccccceeeeeeccccccccceeEEeecccchhchHhhhhcCcceeEEeeccCcccccccceeCCCc
Q psy9577         161 NIVMMGMGEPLLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIPMIDKLAQECPVELAVSLHASNNNLRNKLVPISKK  240 (354)
Q Consensus       161 ~Vvf~GmGEPlln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~  240 (354)
                      +||||||||||+|++++.++++.+++..|++||.|+|+|||||++|.++++++..++.|+||||+++++.|++|||++++
T Consensus       172 ~Ivf~GgGEPLln~d~v~~~i~~lk~~~Gl~~s~r~itlsTnG~~p~i~~L~~~~d~~LaiSLka~d~e~~~~i~pv~~~  251 (404)
T 3rfa_A          172 NVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDEIRDEIVPINKK  251 (404)
T ss_dssp             EEEECSSSCGGGCHHHHHHHHHHHHSTTTTCCCGGGEEEEESCCHHHHHHHHHHCCCEEEEECCCSSHHHHHHHSGGGGT
T ss_pred             EEEEeCCCCcccCHHHHHHHHHHHHhhcCcCcCCCceEEECCCcHHHHHHHHHhhcceEEecccCCCHHHHHHhcCCccC
Confidence            99999999999999999999999998679999999999999999998999998877789999999999999999999999


Q ss_pred             CchHHHHHHHhhhhccCCCc---eeeeeeeeccCCCCchHHHHHHHHHhhcCccccceeeeeeeCCCCCCCCcccccchh
Q psy9577         241 YPLKELILACHRYITYSPRH---MITFEYCMLHGINDTDIHAIELISLMRKNKILTSCKINLIPFNCFPNSNLICSKNSR  317 (354)
Q Consensus       241 ~~l~~il~~l~~~~~~~~~~---~v~ieyvlI~GvNDs~ed~~~La~ll~~~~~~~~~~vnLIp~n~~~~~~~~~p~~e~  317 (354)
                      ++++++++++++|.... +.   +|+|||+||||+||+++++.+|++|+++    ++++||||||||+++..|++|+.++
T Consensus       252 ~~le~vl~ai~~~~~~~-g~~~~~V~ie~vLI~GvNDs~e~~~~La~ll~~----l~~~VnLIpynP~~~~~~~~ps~e~  326 (404)
T 3rfa_A          252 YNIETFLAAVRRYLEKS-NANQGRVTIEYVMLDHVNDGTEHAHQLAELLKD----TPCKINLIPWNPFPGAPYGRSSNSR  326 (404)
T ss_dssp             SCHHHHHHHHHHHHHHC-TTTTTCEEEEEEEBTTTTCSHHHHHHHHHHTTT----SCEEEEEEECCCCTTCCCCBCCHHH
T ss_pred             CCHHHHHHHHHHHHHHh-CCCcccEEEEEEEecCCCCCHHHHHHHHHHHHc----CCCcEEEEeccCCCCCCCCCCCHHH
Confidence            99999999998887655 35   8999999999999999999999999999    6789999999999999999999999


Q ss_pred             HHHHHHHHhhCceeEEEecccccchhhhhhhcccc
Q psy9577         318 IKIFAKILMNSGIFVTIRKIRGNDINAACGQLSGK  352 (354)
Q Consensus       318 l~~f~~~l~~~gi~v~ir~~~G~di~aaCGqL~~~  352 (354)
                      +++|+++|+++|+.|+||+++|+||+||||||+.+
T Consensus       327 i~~f~~iL~~~Gi~vtiR~~~G~di~aaCGQL~~~  361 (404)
T 3rfa_A          327 IDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGD  361 (404)
T ss_dssp             HHHHHHHHHHTTCEEEECCCCCC------------
T ss_pred             HHHHHHHHHHcCCcEEEcCCCCcccccccccchhh
Confidence            99999999999999999999999999999999865
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} Back     alignment and structure
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* Back     alignment and structure
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* Back     alignment and structure
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} Back     alignment and structure
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale} Back     alignment and structure
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* Back     alignment and structure
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 Back     alignment and structure
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} Back     alignment and structure
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 Back     alignment and structure
>4fhd_A Spore photoproduct lyase; partial TIM-barrel, DNA repair, damaged DNA; HET: EEM 0TT; 2.00A {Geobacillus thermodenitrificans} PDB: 4fhc_A* 4fhg_A* 4fhe_A* 4fhf_A* Back     alignment and structure
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query354
d1tv8a_327 Molybdenum cofactor biosynthesis protein A MoaA {S 99.44
d1r30a_312 Biotin synthase {Escherichia coli [TaxId: 562]} 98.6
d1olta_ 441 Oxygen-independent coproporphyrinogen III oxidase 97.91
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.44  E-value=1.2e-13  Score=128.59  Aligned_cols=163  Identities=18%  Similarity=0.231  Sum_probs=111.6

Q ss_pred             ceeEEeccccceEeeeeecCCCC-----c---ccccchhhhhhhheehhhhhhhhhcCcccCCcCceeEEeeeeeccCcc
Q psy9577          99 NTLCISTQVGCAINCIFCSTGRQ-----G---FVRNLTVGEIIGQLWVTEFKLRREKNIKINSQGKRQITNIVMMGMGEP  170 (354)
Q Consensus        99 ~tlcvSsq~GC~~~C~fC~tg~~-----g---~~r~lt~~EIv~qv~~~~~~~~~~~~~~~~~~gg~~i~~Vvf~GmGEP  170 (354)
                      .+++|+.+..||++|.||.....     .   -.+.||.+++...+...    .+.           .+..|.|+| |||
T Consensus        12 ~~l~ieiT~~CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~----~~~-----------g~~~v~~~G-GEp   75 (327)
T d1tv8a_          12 RDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVY----AEL-----------GVKKIRITG-GEP   75 (327)
T ss_dssp             CEEEEECCSCCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHH----HHT-----------TCCEEEEES-SCG
T ss_pred             CcEEEEeccccCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHH----HHc-----------CCeEEEeCC-Ccc
Confidence            36889999999999999974321     1   12347888776644322    221           255789999 999


Q ss_pred             ccccccccceeeeeeccccccccceeEEeecccchh--chHhhhhcCcceeEEeeccCcccccccceeCCCcCchHHHHH
Q psy9577         171 LLNYKSTIGALKLILSDHAYGLSRRHVILSTSGIIP--MIDKLAQECPVELAVSLHASNNNLRNKLVPISKKYPLKELIL  248 (354)
Q Consensus       171 lln~~~v~~~l~~l~~~~g~~~~~r~itvsT~G~~p--~i~~l~~~~~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~il~  248 (354)
                      +++.+ +.+.+....+..+.    ....++|+++..  .++++.+.....+.+|+++.+++.|+++.+.  ...++.++.
T Consensus        76 ~l~~~-~~e~i~~~~~~~~~----~~~~~Tng~ll~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~rg~--~g~~~~~~~  148 (327)
T d1tv8a_          76 LMRRD-LDVLIAKLNQIDGI----EDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNR--NIKATTILE  148 (327)
T ss_dssp             GGSTT-HHHHHHHHTTCTTC----CEEEEEECSTTHHHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSS--CCCHHHHHH
T ss_pred             ccccc-HHHHHHHHhhhccc----cccccccccccchhHHHHHHHcCCCEEeeecccCCHHHhhhheee--ccccchhhh
Confidence            99855 44444444432333    133445555442  2566666554568999999999999999864  345788888


Q ss_pred             HHhhhhccCCCceeeeeeeeccCCCCchHHHHHHHHHhhc
Q psy9577         249 ACHRYITYSPRHMITFEYCMLHGINDTDIHAIELISLMRK  288 (354)
Q Consensus       249 ~l~~~~~~~~~~~v~ieyvlI~GvNDs~ed~~~La~ll~~  288 (354)
                      +++...+.  +.++.+.+++++|.|..  ++..+.++++.
T Consensus       149 ~~~~~~~~--g~~~~~~~~v~~~~n~~--~~~~~~~~~~~  184 (327)
T d1tv8a_         149 QIDYATSI--GLNVKVNVVIQKGINDD--QIIPMLEYFKD  184 (327)
T ss_dssp             HHHHHHHT--TCEEEEEEEECTTTTGG--GHHHHHHHHHH
T ss_pred             HHHHHHHc--CCCcceeEEEecCcccc--ccHHHHHHHHh
Confidence            88877654  46899999999998875  56778888876
>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} Back     information, alignment and structure