Psyllid ID: psy9583
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 866 | 2.2.26 [Sep-21-2011] | |||||||
| P52992 | 474 | Dihydrolipoyl dehydrogena | yes | N/A | 0.543 | 0.993 | 0.517 | 1e-152 | |
| P14218 | 478 | Dihydrolipoyl dehydrogena | yes | N/A | 0.542 | 0.983 | 0.475 | 1e-134 | |
| Q9I3D1 | 478 | Dihydrolipoamide dehydrog | yes | N/A | 0.542 | 0.983 | 0.475 | 1e-134 | |
| P18925 | 477 | Dihydrolipoyl dehydrogena | yes | N/A | 0.542 | 0.985 | 0.460 | 1e-132 | |
| P31052 | 478 | Dihydrolipoamide dehydrog | yes | N/A | 0.542 | 0.983 | 0.479 | 1e-131 | |
| P52993 | 416 | Dihydrolipoyllysine-resid | no | N/A | 0.443 | 0.923 | 0.565 | 1e-124 | |
| O00087 | 511 | Dihydrolipoyl dehydrogena | yes | N/A | 0.528 | 0.896 | 0.469 | 1e-124 | |
| Q9M5K3 | 507 | Dihydrolipoyl dehydrogena | yes | N/A | 0.543 | 0.928 | 0.462 | 1e-123 | |
| Q9M5K2 | 507 | Dihydrolipoyl dehydrogena | no | N/A | 0.543 | 0.928 | 0.452 | 1e-122 | |
| P09623 | 509 | Dihydrolipoyl dehydrogena | yes | N/A | 0.534 | 0.909 | 0.486 | 1e-122 |
| >sp|P52992|DLDH_CUPNH Dihydrolipoyl dehydrogenase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhL PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 249/481 (51%), Positives = 340/481 (70%), Gaps = 10/481 (2%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID--EWKDNEENFALGGTCTNVGCIPSK 444
M+K FDV+VIGAGPGGY+A+IR QLG AC + + D + LGGTC NVGCIPSK
Sbjct: 1 MSKQFDVLVIGAGPGGYIAAIRAGQLGLNVACCEGNPYDDPKGEARLGGTCLNVGCIPSK 60
Query: 445 ALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFF 504
ALL +S FENV++ ++GI +V +++ KML+RK++I+ K GI FLF+KNK+
Sbjct: 61 ALLASSEEFENVQHHLGDHGITVGDVKVDVAKMLKRKDDIVGKMTKGIEFLFRKNKVTLL 120
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
G+ F GK F ++ E +TAK +IIATGSKAR PG+K D +L+ N+GAL
Sbjct: 121 KGYGKFVGKSAEGFQ----VDVAGEVVTAKQVIIATGSKARHLPGIKVDNDLVSDNEGAL 176
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+ VPKKL +IGAGVIGLE+GS+WRRLGS+VT+LE FL DE +AK+A L KQ
Sbjct: 177 KFPAVPKKLGVIGAGVIGLELGSVWRRLGSDVTVLEALPAFLGAADEGVAKEAQKQLTKQ 236
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
GL L ++++ K V + Y++K +T + D+L++++GR+PNT+NL +D
Sbjct: 237 GLKFSLGVNVNEVTTGKNGVTVKYTDKDGKAQTLEV----DRLIVSVGRVPNTDNLGLDA 292
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINF 744
+GL ++ FI V+D+C T +P ++AIGDVVRGPMLAHKAE+EG+ VAE I+GQK I++
Sbjct: 293 VGLAADQRGFIEVDDHCATKVPGLWAIGDVVRGPMLAHKAEDEGVAVAERIAGQKPHIDY 352
Query: 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMK 804
N +P+VIYTFPEIA VGKTE LK Y G FPF+AN RA +G G VK+L+D K
Sbjct: 353 NCVPWVIYTFPEIAWVGKTEAQLKAEGREYKAGQFPFMANGRALGMGHADGFVKMLADAK 412
Query: 805 SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+DEILG+HI+ AS+LIAEAV+A+EF+A+SEDI R+CH HPS+SE M+EAA++++ R +
Sbjct: 413 TDEILGVHIVAANASDLIAEAVVAMEFKAASEDIGRVCHPHPSMSEVMREAALAVDKRQL 472
Query: 865 N 865
N
Sbjct: 473 N 473
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 4 |
| >sp|P14218|DLDH_PSEFL Dihydrolipoyl dehydrogenase OS=Pseudomonas fluorescens GN=lpd PE=1 SV=3 | Back alignment and function description |
|---|
Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/480 (47%), Positives = 326/480 (67%), Gaps = 10/480 (2%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M++ FDV+VIGAGPGGYVA+IR AQLG KTACI+++ E ALGGTC NVGCIPSKAL
Sbjct: 1 MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L +S+ + K +F +GI + VT+++ M+ RK NI+K GI LFK N + F G
Sbjct: 61 LDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEG 120
Query: 507 HAIFTGKIQNNFH-EIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
H GK+ N E+ ++ + + A+ +IIA+GS+ P +++I+ + GALE
Sbjct: 121 H----GKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLSDDIIVDSTGALE 176
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
VPKKL +IGAGVIGLE+GS+W RLG+EVT+LE FL DE+IAK+A +L KQG
Sbjct: 177 FQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQG 236
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
LNI L ++ ++ K+ V + +++ + K FDKL++A+GR P T +L
Sbjct: 237 LNIRLGARVTASEVKKKQVTVTFTDANGEQK-----ETFDKLIVAVGRRPVTTDLLAADS 291
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
G+ ++E FI V+D+C+T++P ++AIGDVVRG MLAHKA EEG+MVAE I+G K +N++
Sbjct: 292 GVTLDERGFIYVDDHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERIAGHKAQMNYD 351
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P VIYT PEIA VGKTEQ LK + NVG FPF A+ RA +T+G+VK+++D K+
Sbjct: 352 LIPSVIYTHPEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIADAKT 411
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
D +LG+H+IGP A+EL+ + I +EF S+ED+ + HP+LSEA+ EAA+++ +I+
Sbjct: 412 DRVLGVHVIGPSAAELVQQGAIGMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGHAIH 471
|
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of 3 enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). Pseudomonas fluorescens (taxid: 294) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q9I3D1|DLDH2_PSEAE Dihydrolipoamide dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=lpdG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/480 (47%), Positives = 326/480 (67%), Gaps = 10/480 (2%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M++ FDV+VIGAGPGGYVA+IR AQLG KTACI+++ E ALGGTC NVGCIPSKAL
Sbjct: 1 MSQKFDVVVIGAGPGGYVAAIRAAQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L +S+ + K +F +GI + VT+++ M+ RK NI+K GI LFK N + F G
Sbjct: 61 LDSSYKYHEAKEAFKVHGIEAKGVTIDVPAMVARKANIVKNLTGGIATLFKANGVTSFEG 120
Query: 507 HAIFTGKIQNNFH-EIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
H GK+ N E+ ++ + + A+ +IIA+GS+ P +++I+ + GALE
Sbjct: 121 H----GKLLANKQVEVTGLDGKTQVLEAENVIIASGSRPVEIPPAPLTDDIIVDSTGALE 176
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
VPKKL +IGAGVIGLE+GS+W RLG+EVT+LE FL DE+IAK+A +L KQG
Sbjct: 177 FQAVPKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPAADEQIAKEALKVLTKQG 236
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
LNI L ++ ++ K+ V + +++ + K FDKL++A+GR P T +L
Sbjct: 237 LNIRLGARVTASEVKKKQVTVTFTDANGEQK-----ETFDKLIVAVGRRPVTTDLLAADS 291
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
G+ ++E FI V+D+C+T++P ++AIGDVVRG MLAHKA EEG+MVAE I+G K +N++
Sbjct: 292 GVTLDERGFIYVDDHCKTSVPGVFAIGDVVRGAMLAHKASEEGVMVAERIAGHKAQMNYD 351
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P VIYT PEIA VGKTEQ LK + NVG FPF A+ RA +T+G+VK+++D K+
Sbjct: 352 LIPSVIYTHPEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIADAKT 411
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
D +LG+H+IGP A+EL+ + I +EF S+ED+ + HP+LSEA+ EAA+++ +I+
Sbjct: 412 DRVLGVHVIGPSAAELVQQGAIGMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGHAIH 471
|
Also acts in the glycine cleavage system. Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|P18925|DLDH_AZOVI Dihydrolipoyl dehydrogenase OS=Azotobacter vinelandii PE=1 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1213), Expect = e-132, Method: Compositional matrix adjust.
Identities = 221/480 (46%), Positives = 321/480 (66%), Gaps = 10/480 (2%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M++ FDVIVIGAGPGGYVA+I+ AQLG KTA I+++K E ALGGTC NVGCIPSKAL
Sbjct: 1 MSQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L +S+ F SF +GI+T V +++ M+ RK+ I++ G+ L K N + F G
Sbjct: 61 LDSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG 120
Query: 507 HA-IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
H + GK E+ + + + + + +I+A+GSK P D+++I+ + GAL+
Sbjct: 121 HGKLLAGKKV----EVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALD 176
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
NVP KL +IGAGVIGLE+GS+W RLG+EVT+LE FL VDE++AK+A +L KQG
Sbjct: 177 FQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQG 236
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
L I+L ++ ++ + V + + + + FDKL++A+GR P T +L
Sbjct: 237 LKILLGARVTGTEVKNKQVTVKFVDAEGEK-----SQAFDKLIVAVGRRPVTTDLLAADS 291
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
G+ ++E FI V+D C T++P +YAIGDVVRG MLAHKA EEG++VAE I+G K +N++
Sbjct: 292 GVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYD 351
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P VIYT PEIA VGKTEQ LK ++ NVG+FPF A+ RA +T+G VK+++D K+
Sbjct: 352 LIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKT 411
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
D +LG+H+IGP A+EL+ + IA+EF S+ED+ + HP+LSEA+ EAA+++ +I+
Sbjct: 412 DRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHAIH 471
|
The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Azotobacter vinelandii (taxid: 354) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|P31052|DLDH2_PSEPU Dihydrolipoamide dehydrogenase OS=Pseudomonas putida GN=lpdG PE=1 SV=4 | Back alignment and function description |
|---|
Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/480 (47%), Positives = 316/480 (65%), Gaps = 10/480 (2%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M + FDV+VIGAGPGGYVA+I+ AQLG KTACI+++ D E ALGGTC NVGCIPSKAL
Sbjct: 1 MTQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYTDAEGKLALGGTCLNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L +S ++ K SF +GI+T V +++ M+ RK I+K G+ LFK N + G
Sbjct: 61 LDSSWKYKEAKESFNVHGISTGEVKMDVAAMVGRKAGIVKNLTGGVATLFKANGVTSIQG 120
Query: 507 HA-IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
H + GK E+ + T E I A+ +I+A+GS+ P D+N+I+ + GALE
Sbjct: 121 HGKLLAGKKV----EVTKADGTTEVIEAENVILASGSRPIDIPPAPVDQNVIVDSTGALE 176
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
VPK+L +IGAGVIGLE+GS+W RLG+EVT+LE FL D ++K+A L KQG
Sbjct: 177 FQAVPKRLGVIGAGVIGLELGSVWARLGAEVTVLEALDTFLMAADTAVSKEAQKTLTKQG 236
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
L+I L ++ K+N V + Y+N K IT FDKL++A+GR P T +L
Sbjct: 237 LDIKLGARVTGSKVNGNEVEVTYTNAEGEQK---IT--FDKLIVAVGRRPVTTDLLAADS 291
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
G+ ++E +I V+D C T++P +YAIGDVVRG MLAHKA EEGIMV E I G K +N++
Sbjct: 292 GVTIDERGYIFVDDYCATSVPGVYAIGDVVRGMMLAHKASEEGIMVVERIKGHKAQMNYD 351
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P VIYT PEIA VGKTEQ LK + NVG FPF A+ RA +T G VK+++D K+
Sbjct: 352 LIPSVIYTHPEIAWVGKTEQALKAEGVEVNVGTFPFAASGRAMAANDTGGFVKVIADAKT 411
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
D +LG+H+IGP A+EL+ + IA+EF S+ED+ + HP+LSEA+ EAA+++ +I+
Sbjct: 412 DRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGGAIH 471
|
Also acts in the glycine cleavage system. Pseudomonas putida (taxid: 303) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|P52993|ODO2_CUPNH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=sucB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/403 (56%), Positives = 290/403 (71%), Gaps = 19/403 (4%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
MA+++VK+P+LSES++EAT+LNW KK GE V ++E LI+IETDKV+LE+PAP G+++ I
Sbjct: 1 MAIVDVKVPQLSESVAEATMLNWKKKPGEAVAQDEILIEIETDKVVLEVPAPSAGVLSII 60
Query: 61 IITDGSIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNLNTIV-------------MPSA 107
+ DG V ++++IA IDT+ + ++ MPSA
Sbjct: 61 VKNDGDTVVADEIIAKIDTEATAGAAAPAAAAPAPAAAAPAPAAAVAAPAAAGGVAMPSA 120
Query: 108 KKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNN- 166
K++++ L ++ GTGKDGRI K D L ++ KP L +S +
Sbjct: 121 AKLMAEAGLSAGQVA-GTGKDGRITKGDALAAAAAPAAKAAPAPAAAKPALQQVSAPVDF 179
Query: 167 ----SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEH 222
R EE VPMSRLR IAERLLQSQ+ +AILTTFNE+NM+ ++DLR KYKD+FEKEH
Sbjct: 180 AALGDRPEERVPMSRLRARIAERLLQSQSTNAILTTFNEVNMKPVMDLRNKYKDRFEKEH 239
Query: 223 NVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNAD 282
VKLGFMSFFVKA V ALK++P+INAS+DGN+I+YH Y+DIGIA+ S RGLVVPILRNAD
Sbjct: 240 GVKLGFMSFFVKAAVHALKKFPLINASIDGNDIVYHGYFDIGIAVGSPRGLVVPILRNAD 299
Query: 283 TMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGV 342
MS+ADIEKKI EF KA+D KL EE++GGTF+ISNGGVFGSMLSTPIINPPQSAILGV
Sbjct: 300 QMSLADIEKKIAEFGVKARDGKLSLEELTGGTFSISNGGVFGSMLSTPIINPPQSAILGV 359
Query: 343 HAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF 385
HA K R +VE+ +VIRP+NY A+SYDHRIIDGREAVL L++
Sbjct: 360 HATKDRPVVEDGQIVIRPMNYLAMSYDHRIIDGREAVLGLVAM 402
|
The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3). Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 6 EC: 1 |
| >sp|O00087|DLDH_SCHPO Dihydrolipoyl dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dld1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 222/473 (46%), Positives = 315/473 (66%), Gaps = 15/473 (3%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447
N +D+ VIG GPGGYVA+IR AQLG KT C+ E+ LGGTC NVGCIPSKALL
Sbjct: 43 NGEYDLCVIGGGPGGYVAAIRGAQLGLKTICV------EKRGTLGGTCLNVGCIPSKALL 96
Query: 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
SH + VK+ GI+ V++NL +M++ K++ +K SGI +LFKKNK+++ G
Sbjct: 97 NNSHIYHTVKHDTKRRGIDVSGVSVNLSQMMKAKDDSVKSLTSGIEYLFKKNKVEYAKGT 156
Query: 508 AIFTGKIQNNFHEIQIIN-KTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F I ++ I+ +TI AK IIATGS+ + FPGV DE I+S+ GAL +
Sbjct: 157 GSF---IDPQTLSVKGIDGAADQTIKAKNFIIATGSEVKPFPGVTIDEKKIVSSTGALSL 213
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPKK+ ++G G+IGLE+GS+W RLG+EVT++E +D +I+K +++KQG+
Sbjct: 214 SEVPKKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPMDADISKALSRIISKQGI 273
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+TK+ K+N ++V + N N + T D LL+AIGR+P T L +DK+G
Sbjct: 274 KFKTSTKLLSAKVNGDSVEVEIENMKNNKRETYQT---DVLLVAIGRVPYTEGLGLDKLG 330
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHIS-GQKHSINFN 745
+ ++++N +I++ TNIP+I IGD GPMLAHKAE+EGI E+I+ GQ H +N+N
Sbjct: 331 ISMDKSNRVIMDSEYRTNIPHIRVIGDATLGPMLAHKAEDEGIAAVEYIAKGQGH-VNYN 389
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P V+YT PE+A VG TEQ K+ I Y +G FPF ANSRA+ + G+VK++ D ++
Sbjct: 390 CIPAVMYTHPEVAWVGITEQKAKESGIKYRIGTFPFSANSRAKTNMDADGLVKVIVDAET 449
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMS 858
D +LG+H+IGPMA ELI EA +A+E+ AS+ED+AR+CH HP+LSEA KEA M+
Sbjct: 450 DRLLGVHMIGPMAGELIGEATLALEYGASAEDVARVCHAHPTLSEATKEAMMA 502
|
Lipoamide dehydrogenase is a component of the alpha-ketoacid dehydrogenase complexes (By similarity). Malfunction of this protein blocks the progression of cell cycle from G1 to S phase. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q9M5K3|DLDH1_ARATH Dihydrolipoyl dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=LPD1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/491 (46%), Positives = 331/491 (67%), Gaps = 20/491 (4%)
Query: 383 MSFIMNKNF--------DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
SF +++ F DV++IG GPGGYVA+I+ +QLG KT CI E+ ALGGT
Sbjct: 28 FSFSLSRGFASSGSDENDVVIIGGGPGGYVAAIKASQLGLKTTCI------EKRGALGGT 81
Query: 435 CTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF 494
C NVGCIPSKALL +SH + K+SF +GI +V ++L ML +K+N +K GI
Sbjct: 82 CLNVGCIPSKALLHSSHMYHEAKHSFANHGIKVSSVEVDLPAMLAQKDNAVKNLTRGIEG 141
Query: 495 LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDE 554
LFKKNK+ + G+ F I N ++ I+ + K+II+ATGS +S PG+ DE
Sbjct: 142 LFKKNKVTYVKGYGKF---ISPNEVSVETIDGGNTIVKGKHIIVATGSDVKSLPGITIDE 198
Query: 555 NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIA 614
I+S+ GAL + VPKKL +IGAG IGLE+GS+W RLGSEVT++E + + + ++D EI
Sbjct: 199 KKIVSSTGALSLSEVPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIR 258
Query: 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674
K+ L KQ + +L TK+ + + + V + + + I+ + D +L++ GR
Sbjct: 259 KQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTV-EPAEGGEQSILEA--DVVLVSAGRT 315
Query: 675 PNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEH 734
P T+ L+++KIG++ ++ I+VND +N+P +YAIGDV+ GPMLAHKAEE+G+ E
Sbjct: 316 PFTSGLDLEKIGVETDKAGRILVNDRFLSNVPGVYAIGDVIPGPMLAHKAEEDGVACVEF 375
Query: 735 ISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETS 794
I+G+ ++++ +P V+YT PE+ASVGKTE+ LKK +SY VG FPF+ANSRA+ +
Sbjct: 376 IAGKHGHVDYDKVPGVVYTHPEVASVGKTEEQLKKEGVSYRVGKFPFMANSRAKAIDNAE 435
Query: 795 GMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854
G+VKIL+D ++D+ILG+HI+ P A ELI EAV+AI + ASSEDIAR+CH HP++SEA+KE
Sbjct: 436 GLVKILADKETDKILGVHIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKE 495
Query: 855 AAMSIENRSIN 865
AAM+ ++ I+
Sbjct: 496 AAMATYDKPIH 506
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|Q9M5K2|DLDH2_ARATH Dihydrolipoyl dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=LPD2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1127), Expect = e-122, Method: Compositional matrix adjust.
Identities = 222/491 (45%), Positives = 326/491 (66%), Gaps = 20/491 (4%)
Query: 383 MSFIMNKNF--------DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
SF + + F DV++IG GPGGYVA+I+ AQLG KT CI E+ ALGGT
Sbjct: 28 FSFSLTRGFASSGSDDNDVVIIGGGPGGYVAAIKAAQLGLKTTCI------EKRGALGGT 81
Query: 435 CTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF 494
C NVGCIPSKALL +SH + K+ F +G+ +V ++L ML +K+ +K G+
Sbjct: 82 CLNVGCIPSKALLHSSHMYHEAKHVFANHGVKVSSVEVDLPAMLAQKDTAVKNLTRGVEG 141
Query: 495 LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDE 554
LFKKNK+ + G+ F + + + I+ + K+II+ATGS +S PG+ DE
Sbjct: 142 LFKKNKVNYVKGYGKF---LSPSEVSVDTIDGENVVVKGKHIIVATGSDVKSLPGITIDE 198
Query: 555 NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIA 614
I+S+ GAL + +PKKL +IGAG IGLE+GS+W RLGSEVT++E +++ + +D EI
Sbjct: 199 KKIVSSTGALSLTEIPKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIR 258
Query: 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674
K+ L KQ + +L TK+ + + + V + +T + D +L++ GR
Sbjct: 259 KQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGEQTTLEA---DVVLVSAGRT 315
Query: 675 PNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEH 734
P T+ L+++KIG++ ++ I+VN+ TN+ +YAIGDV+ GPMLAHKAEE+G+ E
Sbjct: 316 PFTSGLDLEKIGVETDKGGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEF 375
Query: 735 ISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETS 794
I+G+ ++++ +P V+YT+PE+ASVGKTE+ LKK +SYNVG FPF+ANSRA+ +
Sbjct: 376 IAGKHGHVDYDKVPGVVYTYPEVASVGKTEEQLKKEGVSYNVGKFPFMANSRAKAIDTAE 435
Query: 795 GMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854
GMVKIL+D ++D+ILG+HI+ P A ELI EAV+AI + ASSEDIAR+CH HP++SEA+KE
Sbjct: 436 GMVKILADKETDKILGVHIMSPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAIKE 495
Query: 855 AAMSIENRSIN 865
AAM+ ++ I+
Sbjct: 496 AAMATYDKPIH 506
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. The pyruvate dehydrogenase complex contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
| >sp|P09623|DLDH_PIG Dihydrolipoyl dehydrogenase, mitochondrial OS=Sus scrofa GN=DLD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 233/479 (48%), Positives = 316/479 (65%), Gaps = 16/479 (3%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV VIG+GPGGYVA+I+ AQLGFKT CI E+N LGGTC NVGCIPSKALL SH
Sbjct: 43 DVTVIGSGPGGYVAAIKAAQLGFKTVCI------EKNETLGGTCLNVGCIPSKALLNNSH 96
Query: 452 SFENVKN-SFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
+ F GI V LNL+KM+E+K+N +K GI LFK+NK+ +G+
Sbjct: 97 YYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKI 156
Query: 511 TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVP 570
TGK Q + + + E I K I+IATGS+ FPG+ DE+ ++S+ GAL + VP
Sbjct: 157 TGKNQVTATKA---DGSTEVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKVP 213
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNII 629
+K+ +IGAGVIG+E+GS+W+RLG++VT +E+ + +D E++K +L KQG
Sbjct: 214 EKMVVIGAGVIGVELGSVWQRLGADVTAVELLGHVGGIGIDMEVSKNFQRILQKQGFKFK 273
Query: 630 LNTK-IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
LNTK I K + N+ ++ S K E+IT D LL+ IGR P T NL ++++G++
Sbjct: 274 LNTKVIGATKKSDGNIDVSIEAASGG-KAEVITC--DVLLVCIGRRPFTQNLGLEELGIE 330
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALP 748
++ I VN +T IPNIYAIGDVV GPMLAHKAE+EGI+ E ++G I++N +P
Sbjct: 331 LDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVP 390
Query: 749 FVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEI 808
VIYT PE+A VGK+E+ LK+ I Y VG FPF ANSRA+ +T GMVKIL +D +
Sbjct: 391 SVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRV 450
Query: 809 LGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE-NRSINY 866
LG HIIGP A E+I EA +A+E+ AS EDIAR+CH HP+LSEA +EA ++ ++IN+
Sbjct: 451 LGAHIIGPGAGEMINEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKAINF 509
|
Lipoamide dehydrogenase is a component of the glycine cleavage system as well as of the alpha-ketoacid dehydrogenase complexes. Involved in the hyperactivation of spermatazoa during capacitation and in the spermatazoal acrosome reaction. Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 8 EC: . EC: 1 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 866 | ||||||
| 152980382 | 475 | dihydrolipoamide dehydrogenase [Janthino | 0.548 | 1.0 | 0.595 | 1e-176 | |
| 445498352 | 476 | dihydrolipoamide dehydrogenase LpdA [Jan | 0.549 | 1.0 | 0.610 | 1e-175 | |
| 399018027 | 475 | dihydrolipoamide dehydrogenase [Herbaspi | 0.548 | 1.0 | 0.614 | 1e-174 | |
| 409406693 | 475 | 2-oxoglutarate dehydrogenase E3 componen | 0.548 | 1.0 | 0.625 | 1e-174 | |
| 300312271 | 475 | 2-oxoglutarate dehydrogenase E3 componen | 0.548 | 1.0 | 0.620 | 1e-174 | |
| 415949076 | 475 | Dihydrolipoamide dehydrogenase [Herbaspi | 0.548 | 1.0 | 0.620 | 1e-172 | |
| 89901097 | 475 | dihydrolipoamide dehydrogenase [Rhodofer | 0.548 | 1.0 | 0.570 | 1e-171 | |
| 398836177 | 475 | dihydrolipoamide dehydrogenase [Herbaspi | 0.548 | 1.0 | 0.608 | 1e-171 | |
| 121594191 | 475 | dihydrolipoamide dehydrogenase [Acidovor | 0.548 | 1.0 | 0.587 | 1e-170 | |
| 222111097 | 475 | dihydrolipoamide dehydrogenase [Acidovor | 0.548 | 1.0 | 0.587 | 1e-170 |
| >gi|152980382|ref|YP_001353204.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] gi|151280459|gb|ABR88869.1| dihydrolipoamide dehydrogenase [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 286/480 (59%), Positives = 373/480 (77%), Gaps = 5/480 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+KNFDV+VIGAGPGGYVA+IR AQLGF ACIDEWK+ + A GGTCTNVGCIPSKA+
Sbjct: 1 MSKNFDVVVIGAGPGGYVAAIRAAQLGFTVACIDEWKNEKGGPAPGGTCTNVGCIPSKAM 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
LQ+S ++ + ++F E+GI + ++LN++KM+ RK+ ++K+NN GIL+LFKKNK+ FFHG
Sbjct: 61 LQSSENYHHAGHAFAEHGIEVKGLSLNVKKMVARKDTVVKQNNDGILYLFKKNKVTFFHG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F K + HEI+I T+E I AK++++ATGS R+ PG FDE LILSN GALE+
Sbjct: 121 RGSFV-KAADGGHEIKIAGATEENIFAKHVVVATGSNPRALPGAAFDEKLILSNTGALEI 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPK+L +IGAGVIGLE+GS+WRRLGSEVT+LE FL VD+ +AK+AF KQGL
Sbjct: 180 TEVPKRLGVIGAGVIGLEMGSVWRRLGSEVTVLEALPAFLGAVDDAVAKEAFKQFTKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
I L +I I K +V +NY + K ++FDKL+++IGR+PNT LN + +G
Sbjct: 240 AISLGVQIGAITAGKNDVTVNYVDD----KGAAQKAVFDKLIVSIGRVPNTIGLNAEAVG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E FI V+ +C+T++PN++A+GDVVRGPMLAHK+EEEG+ VAE I+GQ +NFN
Sbjct: 296 LKLDERGFIAVDADCKTSLPNVWAVGDVVRGPMLAHKSEEEGVAVAERIAGQHGHVNFNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VGKTEQ LK I+Y G FPFLAN RAR LG+T+G VK L+D K+D
Sbjct: 356 IPWVIYTSPEIAWVGKTEQQLKAEKIAYKAGSFPFLANGRARALGDTTGFVKFLADAKTD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
EILG+HIIGPMASELI+EAV+A+EFRASSEDIARICH HPSLSEA+KEAA++++ R++N+
Sbjct: 416 EILGVHIIGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEAVKEAALAVDGRALNF 475
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|445498352|ref|ZP_21465207.1| dihydrolipoamide dehydrogenase LpdA [Janthinobacterium sp. HH01] gi|444788347|gb|ELX09895.1| dihydrolipoamide dehydrogenase LpdA [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 293/480 (61%), Positives = 369/480 (76%), Gaps = 4/480 (0%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+K FDV+VIGAGPGGY+A+IR AQLGF AC+D W++ + A GGTCTNVGCIPSKAL
Sbjct: 1 MSKQFDVVVIGAGPGGYIAAIRAAQLGFSVACVDAWENEKGGPAPGGTCTNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
LQ+S FE+ ++F ++GI+ ++LNL +ML+RKN ++K+NN GILFLFKKNK+ FFHG
Sbjct: 61 LQSSEHFEHAGHAFKDHGIDVAGLSLNLPQMLKRKNTVVKQNNDGILFLFKKNKVTFFHG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
A F G + + + I ETI AK +IIATGS AR+ PG +FDE LILSN GAL +
Sbjct: 121 RAAFAGAATADGYPLTISAPANETINAKQVIIATGSNARALPGAEFDEKLILSNTGALAI 180
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VP KL +IGAGVIGLE+GS+WRRLGSEVT+LE FL VDE+IAK+A L KQGL
Sbjct: 181 EGVPAKLGVIGAGVIGLEMGSVWRRLGSEVTVLEGLPVFLGAVDEQIAKEAGKLFAKQGL 240
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
NI L KI I +NV + Y N K E T++FDKL+I+IGR PNT+ L DK+G
Sbjct: 241 NINLGCKIGTITKGADNVTVAYE----NAKGEAQTAVFDKLIISIGRTPNTDGLAADKVG 296
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E F+ V+D+C+TN+P ++A+GDVVRGPMLAHKAEEEG+ VAE ++GQ NFN
Sbjct: 297 LKLDERGFVAVDDDCKTNLPGVWAVGDVVRGPMLAHKAEEEGVAVAERMAGQHGHTNFNT 356
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VG+TEQ LK ++Y G FPFLAN RAR LG+TSGMVK L+D +D
Sbjct: 357 IPWVIYTSPEIAWVGRTEQQLKADGVAYKAGTFPFLANGRARALGDTSGMVKFLADATTD 416
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
EILG+HIIGPMASELIAEAV+A+EF+AS+EDIARICH HPSLSEA KEAA++I+ R++N+
Sbjct: 417 EILGVHIIGPMASELIAEAVVAMEFKASAEDIARICHAHPSLSEATKEAALAIDKRTLNF 476
|
Source: Janthinobacterium sp. HH01 Species: Janthinobacterium sp. HH01 Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399018027|ref|ZP_10720213.1| dihydrolipoamide dehydrogenase [Herbaspirillum sp. CF444] gi|398101992|gb|EJL92184.1| dihydrolipoamide dehydrogenase [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 295/480 (61%), Positives = 380/480 (79%), Gaps = 5/480 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+KNFDV+VIG GPGGY+A+IR AQLGF TACIDEWK+ + A GGTCTNVGCIPSKAL
Sbjct: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
LQ+S +E+ ++F ++GI+ + ++LNL +ML RKN ++K+NN GIL+LFKKNK+ FFHG
Sbjct: 61 LQSSEHYEHAGHAFKDHGIDVKGLSLNLPQMLGRKNTVVKQNNDGILYLFKKNKVTFFHG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F K N +EI++ T+E+ITAK +I+ATGS AR+ PG FDE LILSN GAL +
Sbjct: 121 RGSFV-KGDANGYEIKVAGATEESITAKQVIVATGSNARALPGAPFDEELILSNTGALAI 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPKKL +IGAGVIGLE+GS+WRRLG+EVT+LE FL VDE+IAK+A LL KQGL
Sbjct: 180 TEVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLAKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+ L KI DIK K++V ++Y++ N + ++FDKL+++IGR PNT LN + IG
Sbjct: 240 TVNLGVKIGDIKAGKKDVSVDYTDDKGNAQK----AVFDKLIVSIGRTPNTTGLNAEGIG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E FI V+ +C+TN+PN++A+GDVVRGPMLAHKAEEEG+ VAE I+GQ +NFN
Sbjct: 296 LKLDERGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VGKTEQ LK ++Y G FPFLAN RAR LG+TSGMVK L+D K+D
Sbjct: 356 IPWVIYTSPEIAWVGKTEQQLKADGVAYKAGTFPFLANGRARALGDTSGMVKFLADAKTD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
EILG+HI+GPMASELI+EAV+A+EFRAS+EDIARICH HPSLSEA KEAA++++ R++N+
Sbjct: 416 EILGVHIVGPMASELISEAVVAMEFRASAEDIARICHAHPSLSEATKEAALAVDKRALNF 475
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|409406693|ref|ZP_11255155.1| 2-oxoglutarate dehydrogenase E3 component lipoamide dehydrogenase [Herbaspirillum sp. GW103] gi|386435242|gb|EIJ48067.1| 2-oxoglutarate dehydrogenase E3 component lipoamide dehydrogenase [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 300/480 (62%), Positives = 374/480 (77%), Gaps = 5/480 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+KNFDV+VIG GPGGY+A+IR AQLGF TACIDEWK+ + A GGTCTNVGCIPSKAL
Sbjct: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
LQ+S +E+ + F E+GI + + LNL+KML RKN ++K+NN GIL+LFKKNK+ FFHG
Sbjct: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVTFFHG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F K N +EI++ +ETITAK++I+ATGS AR+ PG +FDE LILSN GAL +
Sbjct: 121 RGSFV-KGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALSI 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPKKL +IGAGVIGLE+GS+WRRLG+EVT+LE FL VDE+IAK+A LL KQGL
Sbjct: 180 SEVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLTKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+ L KI IK K +V + Y T+ K E T FDKL+I+IGR PNT LN + +G
Sbjct: 240 AVNLGVKIGTIKAGKNSVSVEY----TDAKGEAHTGEFDKLIISIGRTPNTIGLNAEGVG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E FI V+ +C+TN+PN++A+GDVVRGPMLAHKAEEEG+ VAE I+GQ +NFN
Sbjct: 296 LKLDERGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VGKTEQ LK + Y G FPFLAN RAR LG+TSGMVK L+D K+D
Sbjct: 356 IPWVIYTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
EILG+HI+GPMASELI+EAV+A+EFRASSEDIARICH HPSLSEA KEAA++++ R++N+
Sbjct: 416 EILGVHIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300312271|ref|YP_003776363.1| 2-oxoglutarate dehydrogenase E3 component lipoamide dehydrogenase [Herbaspirillum seropedicae SmR1] gi|300075056|gb|ADJ64455.1| 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 298/480 (62%), Positives = 374/480 (77%), Gaps = 5/480 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+KNFDV+VIG GPGGY+A+IR AQLGF TACIDEWK+ + A GGTCTNVGCIPSKAL
Sbjct: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
LQ+S +E+ + F E+GI + + LNL+KML RKN ++K+NN GIL+LFKKNK+ FFHG
Sbjct: 61 LQSSEHYEHASHGFAEHGIEVKGLGLNLEKMLGRKNTVVKQNNDGILYLFKKNKVSFFHG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F K N +EI++ +ETITAK++I+ATGS AR+ PG +FDE LILSN GAL +
Sbjct: 121 RGSFV-KGDANGYEIKVAGAAEETITAKHVIVATGSNARALPGAEFDEKLILSNTGALSI 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPKKL +IGAGVIGLE+GS+WRRLG+EVT+LE FL VDE+IAK+A LL KQGL
Sbjct: 180 TEVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLTKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+ L KI IK K +V + Y T+ K + T FDKL+++IGR PNT LN + +G
Sbjct: 240 AVNLGVKIGAIKAGKNSVSVEY----TDAKGDAHTGEFDKLIVSIGRTPNTIGLNAEGVG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E FI V+ +C+TN+PN++A+GDVVRGPMLAHKAEEEG+ VAE I+GQ +NFN
Sbjct: 296 LKLDERGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VGKTEQ LK + Y G FPFLAN RAR LG+TSGMVK L+D K+D
Sbjct: 356 IPWVIYTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
EILG+HI+GPMASELI+EAV+A+EFRASSEDIARICH HPSLSEA KEAA++++ R++N+
Sbjct: 416 EILGVHIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|415949076|ref|ZP_11556837.1| Dihydrolipoamide dehydrogenase [Herbaspirillum frisingense GSF30] gi|407757803|gb|EKF67722.1| Dihydrolipoamide dehydrogenase [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 298/480 (62%), Positives = 372/480 (77%), Gaps = 5/480 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+KNFDV+VIG GPGGY+A+IR AQLGF TACIDEWK+ + A GGTCTNVGCIPSKAL
Sbjct: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
LQ+S +E+ + F E+GI + + LNL KML RKN ++K+NN GIL+LFKKNK+ FFHG
Sbjct: 61 LQSSEHYEHANHGFAEHGIEVKGLGLNLDKMLGRKNTVVKQNNDGILYLFKKNKVSFFHG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F K N +EI++ +ETI AK++I+ATGS AR+ PG +FDE LILSN GAL +
Sbjct: 121 RGSFV-KGDANGYEIKVAGAAEETIIAKHVIVATGSNARALPGAEFDEKLILSNTGALAI 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPKKL +IGAGVIGLE+GS+WRRLG+EVT+LE FL VDE+IAK+A LL KQGL
Sbjct: 180 SEVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPTFLGAVDEQIAKEAQKLLTKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+ L KI IK K +V + Y T+ K E T FDKL+++IGR PNT LN + +G
Sbjct: 240 AVNLGVKIGTIKAGKNSVSVEY----TDAKGEAHTGEFDKLIVSIGRTPNTIGLNAEGVG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E FI V+ +C+TN+PN++A+GDVVRGPMLAHKAEEEG+ VAE I+GQ +NFN
Sbjct: 296 LKLDERGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VGKTEQ LK + Y G FPFLAN RAR LG+TSGMVK L+D K+D
Sbjct: 356 IPWVIYTSPEIAWVGKTEQQLKADGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
EILG+HI+GPMASELI+EAV+A+EFRASSEDIARICH HPSLSEA KEAA++++ R++N+
Sbjct: 416 EILGVHIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|89901097|ref|YP_523568.1| dihydrolipoamide dehydrogenase [Rhodoferax ferrireducens T118] gi|89345834|gb|ABD70037.1| dihydrolipoamide dehydrogenase [Rhodoferax ferrireducens T118] | Back alignment and taxonomy information |
|---|
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 274/480 (57%), Positives = 366/480 (76%), Gaps = 5/480 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+K FDVIVIGAGPGGY+A+IR AQLG AC+DEWK+++ ALGGTCTN GCIPSKAL
Sbjct: 1 MSKQFDVIVIGAGPGGYIAAIRAAQLGKNVACVDEWKNSKGGPALGGTCTNTGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
LQ+S F++ + F E+GI + V+++ KM+ RK+ ++K+NN GIL+LFKKNK+ FFHG
Sbjct: 61 LQSSEHFDHASHHFAEHGIEVKGVSMDAAKMVARKDAVVKQNNDGILYLFKKNKVSFFHG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
A F ++ + EI++ +ET+ + +I+ATGS AR+ PG FDE+ +LSN+GAL M
Sbjct: 121 RASFVKAVEGGY-EIKVAGAAEETLLGQQVIVATGSSARALPGAPFDESQVLSNEGALAM 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPKKL +IG+GVIGLE+GS+WRRLGSEVTILE FL VD +IAK+A KQGL
Sbjct: 180 TAVPKKLGLIGSGVIGLEMGSVWRRLGSEVTILEGLPAFLGVVDAQIAKEAHKAFVKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
I L + D+K+ K+ V + + TN K E DKL+++IGR+PNT LN + +G
Sbjct: 240 KIELGVTVGDVKVGKKGVSVAW----TNAKGEAQKLDVDKLIVSIGRVPNTVGLNAEAVG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
L+++E I+V+ +C+TN+P ++A+GDVVRGPMLAHKAEEEG+ VAE I+GQ +NFN
Sbjct: 296 LQLDERGAIVVDGDCKTNLPGVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VG+TEQ LK ++Y G FPFLAN RAR LG+T+GMVK+L+D +D
Sbjct: 356 IPWVIYTSPEIAWVGRTEQQLKADGVAYRAGTFPFLANGRARALGDTTGMVKMLADATTD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
EILG+HI+GPMASELIAE V+A+EFRASSEDIARICH HP+LSE+ KEAA++++ R++N+
Sbjct: 416 EILGVHIVGPMASELIAECVVAMEFRASSEDIARICHAHPTLSESTKEAALAVDKRTLNF 475
|
Source: Rhodoferax ferrireducens T118 Species: Albidiferax ferrireducens Genus: Albidiferax Family: Comamonadaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398836177|ref|ZP_10593523.1| dihydrolipoamide dehydrogenase [Herbaspirillum sp. YR522] gi|398213181|gb|EJM99775.1| dihydrolipoamide dehydrogenase [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1566), Expect = e-171, Method: Compositional matrix adjust.
Identities = 292/480 (60%), Positives = 373/480 (77%), Gaps = 5/480 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+KNFDV+VIG GPGGY+A+IR AQLGF TACIDEWK+ + A GGTCTNVGCIPSKAL
Sbjct: 1 MSKNFDVVVIGGGPGGYIAAIRAAQLGFNTACIDEWKNEKGGPAPGGTCTNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
LQ+S +E+ + F E+GI + + L+L KML RKN ++K+NN GIL+LFKKNK+ FFHG
Sbjct: 61 LQSSEHYEHAGHGFAEHGIEVKGLGLDLGKMLGRKNTVVKQNNDGILYLFKKNKVTFFHG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F K N +EI++ T+E+ITAK++IIATGS AR+ PG FDE LILSN GAL +
Sbjct: 121 RGSFV-KGDANGYEIKVAGATEESITAKHVIIATGSNARALPGTPFDEQLILSNAGALAI 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPKKL +IGAGVIGLE+GS+WRRLG+EVT+LE FL VDE+IAK+A LL KQGL
Sbjct: 180 TEVPKKLGVIGAGVIGLEMGSVWRRLGAEVTVLEALPAFLGAVDEQIAKEAQKLLTKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+ L KI +IK K++V + Y++ + FDKL+++IGR PNT LN + IG
Sbjct: 240 KVSLGVKIGEIKAGKKSVTVEYTDSQGAAQK----GEFDKLIVSIGRTPNTIGLNGEAIG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E F+ V+ +C+TN+ N++A+GDVVRGPMLAHKAEEEG+ VAE I+GQ +NFN
Sbjct: 296 LKLDERGFVAVDGDCKTNLANVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VGKTEQ LK ++Y G FPFLAN RAR LG+TSGMVK L+D K+D
Sbjct: 356 IPWVIYTSPEIAWVGKTEQQLKADGVAYKAGTFPFLANGRARALGDTSGMVKFLADAKTD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
EILG+HI+GPMASELI+EAV+A+EF+AS+EDIARICH HPSLSEA KEAA++++ R++N+
Sbjct: 416 EILGVHIVGPMASELISEAVVAMEFKASAEDIARICHAHPSLSEATKEAALAVDKRALNF 475
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|121594191|ref|YP_986087.1| dihydrolipoamide dehydrogenase [Acidovorax sp. JS42] gi|120606271|gb|ABM42011.1| dihydrolipoamide dehydrogenase [Acidovorax sp. JS42] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1565), Expect = e-170, Method: Compositional matrix adjust.
Identities = 282/480 (58%), Positives = 365/480 (76%), Gaps = 5/480 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+K FDVIVIGAGPGGY+A+IR AQLG ACIDEWK+ A GGTCTNVGCIPSKAL
Sbjct: 1 MSKQFDVIVIGAGPGGYIAAIRAAQLGMNVACIDEWKNAAGGAAPGGTCTNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
LQ+S FE+ F ++GI +V +++ KM+ RK+N++K+NN GIL+LFKKNK+ FFHG
Sbjct: 61 LQSSEHFEHANLHFADHGITATDVKMDVAKMIARKDNVVKQNNDGILYLFKKNKVTFFHG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F + + EI++ K +ET+TAK +I+ATGS AR+ PG FDE ILSN GAL +
Sbjct: 121 RGSFVKAVDGGY-EIKVTGKAEETLTAKQVIVATGSNARALPGAAFDEEQILSNDGALAI 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+VPKKL +IG+GVIGLE+GS+WRRLG++VTILE FL VDE+IAK+A +KQGL
Sbjct: 180 GSVPKKLGVIGSGVIGLEMGSVWRRLGADVTILEGLPTFLGAVDEQIAKEAKKAFDKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
I L KI ++K K+ V I Y TN K E DKL+++IGR+PNT LN + +G
Sbjct: 240 KIELGVKIGEVKTGKKGVSIAY----TNAKGEAQALEVDKLIVSIGRVPNTTGLNAEGVG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E ++V+ +C+TN+P ++A+GDVVRGPMLAHKAEEEG+ VAE ++GQ +NFN
Sbjct: 296 LKLDERGAVVVDGDCKTNLPGVWAVGDVVRGPMLAHKAEEEGVAVAERMAGQHGHVNFNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VG+TEQ LK + Y G FPFLAN RAR LG+T+GMVK L+D +D
Sbjct: 356 IPWVIYTSPEIAWVGRTEQQLKADGVKYKAGTFPFLANGRARALGDTTGMVKFLADAATD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
EILG+HI+GPMASELIAEAV+A+EF+ASSEDIARICH HPSLSEA KEAA++++ R++N+
Sbjct: 416 EILGVHIVGPMASELIAEAVVAMEFKASSEDIARICHAHPSLSEATKEAALAVDKRTLNF 475
|
Source: Acidovorax sp. JS42 Species: Acidovorax sp. JS42 Genus: Acidovorax Family: Comamonadaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|222111097|ref|YP_002553361.1| dihydrolipoamide dehydrogenase [Acidovorax ebreus TPSY] gi|221730541|gb|ACM33361.1| dihydrolipoamide dehydrogenase [Acidovorax ebreus TPSY] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1563), Expect = e-170, Method: Compositional matrix adjust.
Identities = 282/480 (58%), Positives = 364/480 (75%), Gaps = 5/480 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+K FDVIVIGAGPGGY+A+IR AQLG ACIDEWK+ A GGTCTNVGCIPSKAL
Sbjct: 1 MSKQFDVIVIGAGPGGYIAAIRAAQLGMNVACIDEWKNAAGGAAPGGTCTNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
LQ+S FE+ F ++GI V +++ KM+ RK+N++K+NN GIL+LFKKNK+ FFHG
Sbjct: 61 LQSSEHFEHANLHFADHGITATGVKMDVAKMIARKDNVVKQNNDGILYLFKKNKVTFFHG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F + + EI++ K +ET+TAK +I+ATGS AR+ PG FDE ILSN GAL +
Sbjct: 121 RGSFVKAVDGGY-EIKVTGKAEETLTAKQVIVATGSNARALPGAAFDEEQILSNDGALAI 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+VPKKL +IG+GVIGLE+GS+WRRLG++VTILE FL VDE+IAK+A +KQGL
Sbjct: 180 GSVPKKLGVIGSGVIGLEMGSVWRRLGADVTILEGLPTFLGAVDEQIAKEAKKAFDKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
I L KI ++K K+ V I Y TN K E DKL+++IGR+PNT LN + +G
Sbjct: 240 KIELGVKIGEVKAGKKGVSIAY----TNAKGEAQALEVDKLIVSIGRVPNTTGLNAEGVG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E ++V+ +C+TN+P ++A+GDVVRGPMLAHKAEEEG+ VAE ++GQ +NFN
Sbjct: 296 LKLDERGAVVVDGDCKTNLPGVWAVGDVVRGPMLAHKAEEEGVAVAERMAGQHGHVNFNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VG+TEQ LK + Y G FPFLAN RAR LG+T+GMVK L+D +D
Sbjct: 356 IPWVIYTSPEIAWVGRTEQQLKADGVKYKAGTFPFLANGRARALGDTTGMVKFLADAATD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
EILG+HI+GPMASELIAEAV+A+EF+ASSEDIARICH HPSLSEA KEAA++++ R++N+
Sbjct: 416 EILGVHIVGPMASELIAEAVVAMEFKASSEDIARICHAHPSLSEATKEAALAVDKRTLNF 475
|
Source: Acidovorax ebreus TPSY Species: Acidovorax ebreus Genus: Acidovorax Family: Comamonadaceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 866 | ||||||
| UNIPROTKB|Q48K69 | 478 | lpdA "Dihydrolipoyl dehydrogen | 0.542 | 0.983 | 0.460 | 2.9e-112 | |
| UNIPROTKB|P31023 | 501 | LPD "Dihydrolipoyl dehydrogena | 0.533 | 0.922 | 0.447 | 1.9e-108 | |
| TAIR|locus:2023782 | 507 | mtLPD1 "mitochondrial lipoamid | 0.533 | 0.911 | 0.451 | 1.9e-108 | |
| UNIPROTKB|Q4KK19 | 484 | lpdA_2 "Dihydrolipoyl dehydrog | 0.542 | 0.971 | 0.443 | 6.3e-108 | |
| TAIR|locus:2089030 | 507 | mtLPD2 "lipoamide dehydrogenas | 0.533 | 0.911 | 0.445 | 1e-107 | |
| UNIPROTKB|P09623 | 509 | DLD "Dihydrolipoyl dehydrogena | 0.534 | 0.909 | 0.469 | 5.1e-106 | |
| UNIPROTKB|F1PAR0 | 509 | DLD "Dihydrolipoyl dehydrogena | 0.560 | 0.952 | 0.448 | 8.3e-106 | |
| UNIPROTKB|F1SAF0 | 509 | DLD "Dihydrolipoyl dehydrogena | 0.534 | 0.909 | 0.469 | 8.3e-106 | |
| FB|FBgn0036762 | 504 | CG7430 [Drosophila melanogaste | 0.533 | 0.916 | 0.440 | 1.1e-105 | |
| UNIPROTKB|F1N206 | 509 | DLD "Dihydrolipoyl dehydrogena | 0.534 | 0.909 | 0.467 | 1.4e-105 |
| UNIPROTKB|Q48K69 lpdA "Dihydrolipoyl dehydrogenase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
Identities = 221/480 (46%), Positives = 310/480 (64%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M++ FDV+VIGAGPGGYVA+I+ AQLG KTACI++++D E ALGGTC NVGCIPSKAL
Sbjct: 1 MSQKFDVVVIGAGPGGYVAAIKAAQLGLKTACIEKYQDKEGKLALGGTCLNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERXXXXXXXXXSGXXXXXXXXXXXXXHG 506
L +S F KN F +GI+T V +++ M+ R G G
Sbjct: 61 LDSSWKFYEAKNGFSVHGISTSEVNIDVPAMIGRKSTIVKGLTGGVASLFKANGVTTLQG 120
Query: 507 HA-IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
H + GK E+ + T E I A ++I+A+GS+ P D+ +I+ + GALE
Sbjct: 121 HGKLLAGKKV----ELTAADGTVEIIEADHVILASGSRPIDIPPAPVDQKVIVDSTGALE 176
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
VP++L +IGAGVIGLE+GS+W RLG++VT+LE F+ DE ++K+A KQG
Sbjct: 177 FQQVPQRLGVIGAGVIGLELGSVWARLGAQVTVLEALDKFIPAADEAVSKEALKTFTKQG 236
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
L+I L ++ K+ E V+++Y++ + + IT FD+L++A+GR P T +L
Sbjct: 237 LDIKLGARVTGSKVEGEEVVVSYTDAAGE---QSIT--FDRLIVAVGRRPVTTDLLASDS 291
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
G+ ++E FI V+D C T++P +YAIGDVVRG MLAHKA EEGIMV E I G K +N+N
Sbjct: 292 GVDLDERGFIYVDDYCTTSVPGVYAIGDVVRGLMLAHKASEEGIMVVERIKGHKAQMNYN 351
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P VIYT PEIA VGKTEQ LK + NVG FPF A+ RA +T G VKI++D K+
Sbjct: 352 LIPSVIYTHPEIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTGGFVKIIADAKT 411
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
D +LG+H+IGP A+EL+ + IA+EF +S+EDI + HP+LSEA+ EAA+++ +I+
Sbjct: 412 DRVLGVHVIGPSAAELVQQGAIAMEFGSSAEDIGMMVFSHPTLSEALHEAALAVNGGAIH 471
|
|
| UNIPROTKB|P31023 LPD "Dihydrolipoyl dehydrogenase, mitochondrial" [Pisum sativum (taxid:3888)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 212/474 (44%), Positives = 310/474 (65%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV++IG GPGGYVA+I+ AQLGFKT CI E+ ALGGTC NVGCIPSKALL +SH
Sbjct: 39 DVVIIGGGPGGYVAAIKAAQLGFKTTCI------EKRGALGGTCLNVGCIPSKALLHSSH 92
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERXXXXXXXXXSGXXXXXXXXXXXXXHGHAIFT 511
+ K+SF +G+ NV ++L M+ + G G+ F
Sbjct: 93 MYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFV 152
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPK 571
+ + + I + K+IIIATGS +S PGV DE I+S+ GAL + +PK
Sbjct: 153 SPSEIS---VDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGALALSEIPK 209
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
KL +IGAG IGLE+GS+W R+GSEVT++E +S + T+D EI K+ L KQG+ L
Sbjct: 210 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLK 269
Query: 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE 691
TK+ + + + V + + +T II + D +L++ GR P T+ LN+DKIG++ ++
Sbjct: 270 TKVVGVDTSGDGVKLTVEPSAGGEQT-IIEA--DVVLVSAGRTPFTSGLNLDKIGVETDK 326
Query: 692 NNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVI 751
I+VN+ TN+ +YAIGDV+ GPMLAHKAEE+G+ E+++G+ ++++ +P V+
Sbjct: 327 LGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVV 386
Query: 752 YTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGI 811
YT PE+ASVGKTE+ +K+ + Y VG FPF+ANSRA+ + G+VKI+++ ++D+ILG+
Sbjct: 387 YTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGV 446
Query: 812 HIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
HI+ P A ELI EA IA+++ ASSEDIAR+CH HP++SEA+KEAAM+ ++ I+
Sbjct: 447 HIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIH 500
|
|
| TAIR|locus:2023782 mtLPD1 "mitochondrial lipoamide dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
Identities = 214/474 (45%), Positives = 311/474 (65%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV++IG GPGGYVA+I+ +QLG KT CI E+ ALGGTC NVGCIPSKALL +SH
Sbjct: 45 DVVIIGGGPGGYVAAIKASQLGLKTTCI------EKRGALGGTCLNVGCIPSKALLHSSH 98
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERXXXXXXXXXSGXXXXXXXXXXXXXHGHAIFT 511
+ K+SF +GI +V ++L ML + G G+ F
Sbjct: 99 MYHEAKHSFANHGIKVSSVEVDLPAMLAQKDNAVKNLTRGIEGLFKKNKVTYVKGYGKF- 157
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPK 571
I N ++ I+ + K+II+ATGS +S PG+ DE I+S+ GAL + VPK
Sbjct: 158 --ISPNEVSVETIDGGNTIVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLSEVPK 215
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
KL +IGAG IGLE+GS+W RLGSEVT++E + + + ++D EI K+ L KQ + +L
Sbjct: 216 KLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSMDGEIRKQFQRSLEKQKMKFMLK 275
Query: 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE 691
TK+ + + + V + + + I+ + D +L++ GR P T+ L+++KIG++ ++
Sbjct: 276 TKVVSVDSSSDGVKLTVE-PAEGGEQSILEA--DVVLVSAGRTPFTSGLDLEKIGVETDK 332
Query: 692 NNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVI 751
I+VND +N+P +YAIGDV+ GPMLAHKAEE+G+ E I+G+ ++++ +P V+
Sbjct: 333 AGRILVNDRFLSNVPGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVV 392
Query: 752 YTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGI 811
YT PE+ASVGKTE+ LKK +SY VG FPF+ANSRA+ + G+VKIL+D ++D+ILG+
Sbjct: 393 YTHPEVASVGKTEEQLKKEGVSYRVGKFPFMANSRAKAIDNAEGLVKILADKETDKILGV 452
Query: 812 HIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
HI+ P A ELI EAV+AI + ASSEDIAR+CH HP++SEA+KEAAM+ ++ I+
Sbjct: 453 HIMAPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEALKEAAMATYDKPIH 506
|
|
| UNIPROTKB|Q4KK19 lpdA_2 "Dihydrolipoyl dehydrogenase" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
Identities = 213/480 (44%), Positives = 310/480 (64%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M++++DVIVIGAGPGGYVA+IR AQLG KT CI+ +K + ALGGTC NVGCIPSKAL
Sbjct: 1 MSESYDVIVIGAGPGGYVAAIRAAQLGLKTVCIERYKGKDGKTALGGTCLNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERXXXXXXXXXSGXXXXXXXXXXXXXHG 506
L +SH + +N F +GI N +++ ML R G G
Sbjct: 61 LDSSHHYYEARNGFEVHGIAISNPQMDVPAMLARKDNVVRNFNGGIASLFKANGVALLEG 120
Query: 507 HAIFTGKIQNNFH-EIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
H GK+ N E+ + + + I+A II+A GS+ P +I+ + GALE
Sbjct: 121 H----GKLLANKEVEVTAADGSTQRISAGNIILAPGSRPIDIPAAPLAGEVIVDSTGALE 176
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
VPK+L +IGAGVIGLE+GS+W RLG++VT+LE +FL VD +IAK+A +L KQG
Sbjct: 177 FTQVPKRLGVIGAGVIGLELGSVWARLGAQVTVLEALDSFLPAVDAQIAKEAQKILGKQG 236
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
L+I L ++ ++ ++V ++ S + + +FD+L++A+GR P T +L
Sbjct: 237 LDIRLGARVTACEVQGDSVKVSLSEAGEDKQ-----QVFDRLIVAVGRRPLTTDLLAADS 291
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
G+ ++E FI V+ C T++P ++AIGDVVRGPMLAHKA EEG+MVAE I+G +H +N++
Sbjct: 292 GVHLDERGFIHVDGQCCTSVPGVFAIGDVVRGPMLAHKASEEGVMVAEGIAGHRHPLNYD 351
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P VIYT PEIA VG+TEQ LK + N+G FPF A+SRA +T+G+VK+++D +
Sbjct: 352 LIPSVIYTHPEIAWVGQTEQALKAEGVELNIGTFPFAASSRAMAANDTAGLVKVIADAGT 411
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
D +LG+H+IGP A+EL+ E I +EF S+ED+ + HP+LSEA+ EAA+++ ++I+
Sbjct: 412 DRVLGVHVIGPGAAELVQEGAIGMEFGTSAEDLGMMVFSHPTLSEALHEAALAVNGQAIH 471
|
|
| TAIR|locus:2089030 mtLPD2 "lipoamide dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 211/474 (44%), Positives = 308/474 (64%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV++IG GPGGYVA+I+ AQLG KT CI E+ ALGGTC NVGCIPSKALL +SH
Sbjct: 45 DVVIIGGGPGGYVAAIKAAQLGLKTTCI------EKRGALGGTCLNVGCIPSKALLHSSH 98
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERXXXXXXXXXSGXXXXXXXXXXXXXHGHAIFT 511
+ K+ F +G+ +V ++L ML + G G+ F
Sbjct: 99 MYHEAKHVFANHGVKVSSVEVDLPAMLAQKDTAVKNLTRGVEGLFKKNKVNYVKGYGKFL 158
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPK 571
+ + + I+ + K+II+ATGS +S PG+ DE I+S+ GAL + +PK
Sbjct: 159 SPSEVS---VDTIDGENVVVKGKHIIVATGSDVKSLPGITIDEKKIVSSTGALSLTEIPK 215
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
KL +IGAG IGLE+GS+W RLGSEVT++E +++ + +D EI K+ L KQ + +L
Sbjct: 216 KLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAADIVPAMDGEIRKQFQRSLEKQKMKFMLK 275
Query: 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE 691
TK+ + + + V + +T + D +L++ GR P T+ L+++KIG++ ++
Sbjct: 276 TKVVGVDSSGDGVKLIVEPAEGGEQTTLEA---DVVLVSAGRTPFTSGLDLEKIGVETDK 332
Query: 692 NNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVI 751
I+VN+ TN+ +YAIGDV+ GPMLAHKAEE+G+ E I+G+ ++++ +P V+
Sbjct: 333 GGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVV 392
Query: 752 YTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGI 811
YT+PE+ASVGKTE+ LKK +SYNVG FPF+ANSRA+ + GMVKIL+D ++D+ILG+
Sbjct: 393 YTYPEVASVGKTEEQLKKEGVSYNVGKFPFMANSRAKAIDTAEGMVKILADKETDKILGV 452
Query: 812 HIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
HI+ P A ELI EAV+AI + ASSEDIAR+CH HP++SEA+KEAAM+ ++ I+
Sbjct: 453 HIMSPNAGELIHEAVLAINYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIH 506
|
|
| UNIPROTKB|P09623 DLD "Dihydrolipoyl dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1049 (374.3 bits), Expect = 5.1e-106, P = 5.1e-106
Identities = 225/479 (46%), Positives = 302/479 (63%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV VIG+GPGGYVA+I+ AQLGFKT CI E+N LGGTC NVGCIPSKALL SH
Sbjct: 43 DVTVIGSGPGGYVAAIKAAQLGFKTVCI------EKNETLGGTCLNVGCIPSKALLNNSH 96
Query: 452 SFENVKNS-FFEYGINTQNVTLNLQKMLERXXXXXXXXXSGXXXXXXXXXXXXXHGHAIF 510
+ F GI V LNL+KM+E+ G +G+
Sbjct: 97 YYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKI 156
Query: 511 TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVP 570
TGK N + T E I K I+IATGS+ FPG+ DE+ ++S+ GAL + VP
Sbjct: 157 TGK--NQVTATKADGST-EVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKVP 213
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNKQGLNII 629
+K+ +IGAGVIG+E+GS+W+RLG++VT +E+ + +D E++K +L KQG
Sbjct: 214 EKMVVIGAGVIGVELGSVWQRLGADVTAVELLGHVGGIGIDMEVSKNFQRILQKQGFKFK 273
Query: 630 LNTK-IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
LNTK I K + N+ ++ S K E+IT D LL+ IGR P T NL ++++G++
Sbjct: 274 LNTKVIGATKKSDGNIDVSIEAASGG-KAEVITC--DVLLVCIGRRPFTQNLGLEELGIE 330
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALP 748
++ I VN +T IPNIYAIGDVV GPMLAHKAE+EGI+ E ++G I++N +P
Sbjct: 331 LDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVP 390
Query: 749 FVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEI 808
VIYT PE+A VGK+E+ LK+ I Y VG FPF ANSRA+ +T GMVKIL +D +
Sbjct: 391 SVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRV 450
Query: 809 LGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE-NRSINY 866
LG HIIGP A E+I EA +A+E+ AS EDIAR+CH HP+LSEA +EA ++ ++IN+
Sbjct: 451 LGAHIIGPGAGEMINEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKAINF 509
|
|
| UNIPROTKB|F1PAR0 DLD "Dihydrolipoyl dehydrogenase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
Identities = 225/502 (44%), Positives = 311/502 (61%)
Query: 371 RIIDGREAV--LSLMSFIMNK-NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEE 427
RI G +AV + L ++ + DV VIG+GPGGYVA+I+ AQLGFKT C+ E+
Sbjct: 19 RISHGLQAVSAVPLRTYADQPIDADVTVIGSGPGGYVAAIKAAQLGFKTVCV------EK 72
Query: 428 NFALGGTCTNVGCIPSKALLQTSHSFENVKNS-FFEYGINTQNVTLNLQKMLERXXXXXX 486
N LGGTC NVGCIPSKALL SH + F GI V LNL+KM+E+
Sbjct: 73 NETLGGTCLNVGCIPSKALLNNSHYYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSTAVK 132
Query: 487 XXXSGXXXXXXXXXXXXXHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546
G +G+ TGK Q + + + + I K I+IATGS+
Sbjct: 133 ALTGGIAHLFKQNKVVHVNGYGKITGKNQVTAKKA---DGSTQVIDTKNILIATGSEVTP 189
Query: 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606
FPG+ DE+ I+S+ GAL + VP+K+ +IGAGVIG+E+GS+W+RLG++VT +E +
Sbjct: 190 FPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVG 249
Query: 607 NT-VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665
+D EI+K +L KQG LNTK+ + + + ++ K E+IT D
Sbjct: 250 GVGIDMEISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVFIEGASGGKAEVITC--D 307
Query: 666 KLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAE 725
LL+ IGR P T NL ++++G++++ I VN +T IPNIYAIGDVV GPMLAHKAE
Sbjct: 308 VLLVCIGRRPFTQNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAE 367
Query: 726 EEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS 785
+EGI+ E ++G I++N +P VIYT PE+A VGK+E+ LK+ I Y VG FPF ANS
Sbjct: 368 DEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANS 427
Query: 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVH 845
RA+ +T GMVKIL +D +LG HI+GP A E++ EA +A+E+ AS EDIAR+CH H
Sbjct: 428 RAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAH 487
Query: 846 PSLSEAMKEAAMSIE-NRSINY 866
P+LSEA +EA ++ +SIN+
Sbjct: 488 PTLSEAFREANLAASFGKSINF 509
|
|
| UNIPROTKB|F1SAF0 DLD "Dihydrolipoyl dehydrogenase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
Identities = 225/479 (46%), Positives = 301/479 (62%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV VIG+GPGGYVA+I+ AQLGFKT CI E+N LGGTC NVGCIPSKALL SH
Sbjct: 43 DVTVIGSGPGGYVAAIKAAQLGFKTVCI------EKNETLGGTCLNVGCIPSKALLNNSH 96
Query: 452 SFENVKNS-FFEYGINTQNVTLNLQKMLERXXXXXXXXXSGXXXXXXXXXXXXXHGHAIF 510
+ F GI V LNL+KM+E+ G +G+
Sbjct: 97 YYHMAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVRVNGYGKI 156
Query: 511 TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVP 570
TGK N + T E I K I+IATGS+ FPG+ DE+ ++S+ GAL + VP
Sbjct: 157 TGK--NQVTATKADGST-EVINTKNILIATGSEVTPFPGITIDEDTVVSSTGALSLKKVP 213
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNKQGLNII 629
+K+ +IGAGVIG+E+GS+W+RLG++VT +E + +D E++K +L KQG
Sbjct: 214 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEVSKNFQRILQKQGFKFK 273
Query: 630 LNTK-IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
LNTK I K + N+ ++ S K E+IT D LL+ IGR P T NL ++++G++
Sbjct: 274 LNTKVIGATKKSDGNIDVSIEAASGG-KAEVITC--DVLLVCIGRRPFTQNLGLEELGIE 330
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALP 748
++ I VN +T IPNIYAIGDVV GPMLAHKAE+EGI+ E ++G I++N +P
Sbjct: 331 LDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVP 390
Query: 749 FVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEI 808
VIYT PE+A VGK+E+ LK+ I Y VG FPF ANSRA+ +T GMVKIL +D +
Sbjct: 391 SVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRV 450
Query: 809 LGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE-NRSINY 866
LG HIIGP A E+I EA +A+E+ AS EDIAR+CH HP+LSEA +EA ++ ++IN+
Sbjct: 451 LGAHIIGPGAGEMINEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKAINF 509
|
|
| FB|FBgn0036762 CG7430 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1013 (361.7 bits), Expect = 1.1e-105, Sum P(2) = 1.1e-105
Identities = 211/479 (44%), Positives = 304/479 (63%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
D++VIG+GPGGYVA+I+ AQ+G KT + E+ LGGTC NVGCIPSKALL SH
Sbjct: 39 DIVVIGSGPGGYVAAIKAAQMGMKTVSV------EKEATLGGTCLNVGCIPSKALLNNSH 92
Query: 452 SFENVKNSFFEY-GINTQNVTLNLQKMLERXXXXXXXXXSGXXXXXXXXXXXXXHGHAIF 510
+ + E GI+ +V+L+L+K++ + G G
Sbjct: 93 YYHMAHSGDLEKRGISCGSVSLDLEKLMGQKSNAVKALTGGIAMLFKKNKVTQLTGF--- 149
Query: 511 TGKIQN-NFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV 569
G I N N E++ + + ET+ K I+IATGS+ FPG++ DE +I+S+ GAL++ V
Sbjct: 150 -GTIVNPNEVEVKKSDGSTETVKTKNILIATGSEVTPFPGIEIDEEVIVSSTGALKLAKV 208
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNKQGLNI 628
PK L +IGAGVIGLE+GS+W RLG+EVT +E +D E++K +L KQGL
Sbjct: 209 PKHLVVIGAGVIGLELGSVWSRLGAEVTAIEFMDTIGGVGIDNEVSKTFQKVLTKQGLKF 268
Query: 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
L TK+ + +NV ++ N + K EI D LL+++GR P T L ++ +G+
Sbjct: 269 KLGTKVTAASRSGDNVTVSVENAKSGEKEEIQC---DALLVSVGRRPYTEGLGLEAVGIV 325
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALP 748
++ I VN +T +PNIYAIGD + GPMLAHKAE+EG++ E I+G I++N +P
Sbjct: 326 KDDRGRIPVNATFQTVVPNIYAIGDCIHGPMLAHKAEDEGLITIEGINGGHVHIDYNCVP 385
Query: 749 FVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEI 808
V+YT PE+A VGK+E+ LK+ ++Y VG FPFLANSRA+ +T G VK+L+D +D+I
Sbjct: 386 SVVYTHPEVAWVGKSEEQLKQEGVAYKVGKFPFLANSRAKTNNDTDGFVKVLADQATDKI 445
Query: 809 LGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE-NRSINY 866
LG HIIGP A ELI EAV+A+E+ A++ED+AR+CH HP+ SEA++EA ++ + IN+
Sbjct: 446 LGTHIIGPGAGELINEAVLAMEYGAAAEDVARVCHAHPTCSEALREANVAAAFGKPINF 504
|
|
| UNIPROTKB|F1N206 DLD "Dihydrolipoyl dehydrogenase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
Identities = 224/479 (46%), Positives = 301/479 (62%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV VIG+GPGGYVA+I+ AQLGFKT C+ E+N LGGTC NVGCIPSKALL SH
Sbjct: 43 DVTVIGSGPGGYVAAIKAAQLGFKTVCV------EKNETLGGTCLNVGCIPSKALLNNSH 96
Query: 452 SFENVKNS-FFEYGINTQNVTLNLQKMLERXXXXXXXXXSGXXXXXXXXXXXXXHGHAIF 510
+ F GI V LNL+KM+E+ G +G+
Sbjct: 97 FYHLAHGKDFASRGIEMSEVRLNLEKMMEQKSNAVKALTGGIAHLFKQNKVVHVNGYGKI 156
Query: 511 TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVP 570
TGK N + T + I K I+IATGS+ FPG+ DE+ I+S+ GAL + VP
Sbjct: 157 TGK--NQVTATKADGST-QVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSLKKVP 213
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNKQGLNII 629
+KL +IGAGVIG+E+GS+W+RLG++VT +E + +D EI+K +L KQG
Sbjct: 214 EKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQGFKFK 273
Query: 630 LNTKIHDIKINKENVLINYS-NKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
LNTK+ K + I+ S ++ K E+IT D LL+ IGR P T NL ++++G++
Sbjct: 274 LNTKVTGAT-KKSDGKIDVSIEAASGGKAEVITC--DVLLVCIGRRPFTQNLGLEELGIE 330
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALP 748
++ I VN +T IPNIYAIGDVV GPMLAHKAE+EGI+ E ++G I++N +P
Sbjct: 331 LDTRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVP 390
Query: 749 FVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEI 808
VIYT PE+A VGK+E+ LK+ I Y VG FPF ANSRA+ +T GMVKIL +D +
Sbjct: 391 SVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRV 450
Query: 809 LGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE-NRSINY 866
LG HI+GP A E++ EA +A+E+ AS EDIAR+CH HP+LSEA +EA ++ +SIN+
Sbjct: 451 LGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKSINF 509
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P52992 | DLDH_CUPNH | 1, ., 8, ., 1, ., 4 | 0.5176 | 0.5438 | 0.9936 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 866 | |||
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 0.0 | |
| PRK05704 | 407 | PRK05704, PRK05704, dihydrolipoamide succinyltrans | 0.0 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 0.0 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 0.0 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 0.0 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 1e-173 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 1e-171 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 1e-157 | |
| TIGR01347 | 403 | TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp | 1e-154 | |
| PRK06115 | 466 | PRK06115, PRK06115, dihydrolipoamide dehydrogenase | 1e-147 | |
| COG0508 | 404 | COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena | 1e-124 | |
| PTZ00144 | 418 | PTZ00144, PTZ00144, dihydrolipoamide succinyltrans | 1e-121 | |
| PRK11856 | 411 | PRK11856, PRK11856, branched-chain alpha-keto acid | 1e-119 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 1e-113 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 1e-110 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 1e-102 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 1e-100 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 8e-97 | |
| PLN02226 | 463 | PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E | 6e-92 | |
| PRK11855 | 547 | PRK11855, PRK11855, dihydrolipoamide acetyltransfe | 4e-86 | |
| pfam00198 | 212 | pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases | 9e-80 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 5e-73 | |
| TIGR02927 | 579 | TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena | 1e-71 | |
| PTZ00153 | 659 | PTZ00153, PTZ00153, lipoamide dehydrogenase; Provi | 9e-69 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 6e-66 | |
| PRK11854 | 633 | PRK11854, aceF, pyruvate dehydrogenase dihydrolipo | 5e-64 | |
| TIGR01349 | 436 | TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase | 4e-63 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 4e-61 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 3e-60 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 1e-59 | |
| TIGR01438 | 484 | TIGR01438, TGR, thioredoxin and glutathione reduct | 2e-57 | |
| PRK14694 | 468 | PRK14694, PRK14694, putative mercuric reductase; P | 4e-56 | |
| PRK13748 | 561 | PRK13748, PRK13748, putative mercuric reductase; P | 5e-54 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 4e-53 | |
| PRK14727 | 479 | PRK14727, PRK14727, putative mercuric reductase; P | 5e-51 | |
| PRK11857 | 306 | PRK11857, PRK11857, dihydrolipoamide acetyltransfe | 3e-50 | |
| PLN02744 | 539 | PLN02744, PLN02744, dihydrolipoyllysine-residue ac | 4e-49 | |
| PLN02528 | 416 | PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase | 5e-49 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 1e-48 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 2e-48 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 4e-47 | |
| PTZ00052 | 499 | PTZ00052, PTZ00052, thioredoxin reductase; Provisi | 9e-47 | |
| PRK08010 | 441 | PRK08010, PRK08010, pyridine nucleotide-disulfide | 1e-46 | |
| PRK14843 | 347 | PRK14843, PRK14843, dihydrolipoamide acetyltransfe | 2e-46 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 4e-46 | |
| TIGR01348 | 546 | TIGR01348, PDHac_trf_long, pyruvate dehydrogenase | 4e-46 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 4e-43 | |
| pfam02852 | 110 | pfam02852, Pyr_redox_dim, Pyridine nucleotide-disu | 8e-41 | |
| PLN02546 | 558 | PLN02546, PLN02546, glutathione reductase | 2e-37 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 8e-25 | |
| cd06849 | 74 | cd06849, lipoyl_domain, Lipoyl domain of the dihyd | 6e-24 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 2e-22 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 2e-21 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 3e-20 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 7e-20 | |
| PRK12270 | 1228 | PRK12270, kgd, alpha-ketoglutarate decarboxylase; | 2e-18 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 2e-18 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 3e-16 | |
| pfam00364 | 73 | pfam00364, Biotin_lipoyl, Biotin-requiring enzyme | 1e-13 | |
| TIGR03140 | 515 | TIGR03140, AhpF, alkyl hydroperoxide reductase sub | 5e-13 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 3e-12 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 8e-12 | |
| PRK11855 | 547 | PRK11855, PRK11855, dihydrolipoamide acetyltransfe | 1e-11 | |
| PRK11892 | 464 | PRK11892, PRK11892, pyruvate dehydrogenase subunit | 2e-11 | |
| PRK14875 | 371 | PRK14875, PRK14875, acetoin dehydrogenase E2 subun | 3e-11 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 8e-11 | |
| cd06663 | 73 | cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_ | 1e-10 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 2e-10 | |
| TIGR02927 | 579 | TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena | 3e-10 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 3e-10 | |
| COG3634 | 520 | COG3634, AhpF, Alkyl hydroperoxide reductase, larg | 4e-10 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 4e-09 | |
| pfam02817 | 39 | pfam02817, E3_binding, e3 binding domain | 5e-09 | |
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 7e-09 | |
| PRK11854 | 633 | PRK11854, aceF, pyruvate dehydrogenase dihydrolipo | 1e-08 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 2e-08 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 9e-08 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 3e-07 | |
| TIGR03143 | 555 | TIGR03143, AhpF_homolog, putative alkyl hydroperox | 5e-07 | |
| COG1233 | 487 | COG1233, COG1233, Phytoene dehydrogenase and relat | 6e-07 | |
| TIGR02032 | 295 | TIGR02032, GG-red-SF, geranylgeranyl reductase fam | 7e-07 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 9e-07 | |
| PRK07494 | 388 | PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl h | 1e-06 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 2e-06 | |
| PRK11854 | 633 | PRK11854, aceF, pyruvate dehydrogenase dihydrolipo | 4e-06 | |
| PRK15317 | 517 | PRK15317, PRK15317, alkyl hydroperoxide reductase | 8e-06 | |
| PRK04176 | 257 | PRK04176, PRK04176, ribulose-1,5-biphosphate synth | 3e-05 | |
| TIGR01348 | 546 | TIGR01348, PDHac_trf_long, pyruvate dehydrogenase | 4e-05 | |
| pfam00890 | 401 | pfam00890, FAD_binding_2, FAD binding domain | 6e-05 | |
| COG0644 | 396 | COG0644, FixC, Dehydrogenases (flavoproteins) [Ene | 7e-05 | |
| pfam01134 | 391 | pfam01134, GIDA, Glucose inhibited division protei | 1e-04 | |
| cd06850 | 67 | cd06850, biotinyl_domain, The biotinyl-domain or b | 1e-04 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 1e-04 | |
| pfam03486 | 405 | pfam03486, HI0933_like, HI0933-like protein | 2e-04 | |
| COG1053 | 562 | COG1053, SdhA, Succinate dehydrogenase/fumarate re | 2e-04 | |
| COG2072 | 443 | COG2072, TrkA, Predicted flavoprotein involved in | 2e-04 | |
| pfam12831 | 415 | pfam12831, FAD_oxidored, FAD dependent oxidoreduct | 3e-04 | |
| COG0511 | 140 | COG0511, AccB, Biotin carboxyl carrier protein [Li | 3e-04 | |
| PLN00128 | 635 | PLN00128, PLN00128, Succinate dehydrogenase [ubiqu | 5e-04 | |
| PRK09078 | 598 | PRK09078, sdhA, succinate dehydrogenase flavoprote | 6e-04 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 6e-04 | |
| PTZ00139 | 617 | PTZ00139, PTZ00139, Succinate dehydrogenase [ubiqu | 7e-04 | |
| COG1635 | 262 | COG1635, THI4, Ribulose 1,5-bisphosphate synthetas | 7e-04 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 8e-04 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 0.001 | |
| PRK05329 | 422 | PRK05329, PRK05329, anaerobic glycerol-3-phosphate | 0.001 | |
| COG2081 | 408 | COG2081, COG2081, Predicted flavoproteins [General | 0.001 | |
| PRK12834 | 549 | PRK12834, PRK12834, putative FAD-binding dehydroge | 0.002 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 0.002 | |
| COG0686 | 371 | COG0686, Ald, Alanine dehydrogenase [Amino acid tr | 0.002 | |
| TIGR03378 | 419 | TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate d | 0.002 | |
| PRK05641 | 153 | PRK05641, PRK05641, putative acetyl-CoA carboxylas | 0.003 | |
| COG0654 | 387 | COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox | 0.003 | |
| PRK06183 | 500 | PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr | 0.003 | |
| PRK12779 | 944 | PRK12779, PRK12779, putative bifunctional glutamat | 0.004 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 740 bits (1913), Expect = 0.0
Identities = 270/479 (56%), Positives = 350/479 (73%), Gaps = 5/479 (1%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+K FDV+VIGAGPGGYVA+IR AQLG K ACI+ WK+ + ALGGTC NVGCIPSKAL
Sbjct: 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKAL 60
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L +S FEN + F ++GI+ V +++ KM+ RK+ ++KK GI LFKKNKI G
Sbjct: 61 LASSEEFENAGHHFADHGIHVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG 120
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F GK + +EI++ + + ITAK++IIATGS+ R PGV FD +IL N GAL
Sbjct: 121 RGSFVGK-TDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGVPFDNKIILDNTGALNF 179
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPKKL +IGAGVIGLE+GS+WRRLG+EVTILE FL DE++AK+A KQGL
Sbjct: 180 TEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGL 239
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+I L KI +IK + V + Y++ +T DKL+++IGR+PNT+ L ++ +G
Sbjct: 240 DIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLE----VDKLIVSIGRVPNTDGLGLEAVG 295
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK++E FI V+D+C TN+PN+YAIGDVVRGPMLAHKAEEEG+ VAE I+GQK I++N
Sbjct: 296 LKLDERGFIPVDDHCRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNT 355
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P+VIYT PEIA VGKTEQ LK + Y G FPF+AN RA +GE G VKI++D K+D
Sbjct: 356 IPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAMGEPDGFVKIIADAKTD 415
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
EILG+H+IGP ASELIAEAV+A+EF+ASSEDIARICH HP+LSE EAA++++ R ++
Sbjct: 416 EILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDKRPLH 474
|
Length = 475 |
| >gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
|---|
Score = 566 bits (1460), Expect = 0.0
Identities = 202/394 (51%), Positives = 273/394 (69%), Gaps = 17/394 (4%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
++E+K+P L ES++EAT+ WHKK G+ V R+E L++IETDKV+LE+PAP G++++I+
Sbjct: 1 MMVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEIL 60
Query: 62 ITDGSIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNL-------------NTIVMPSAK 108
+G VT QV+ ID + ++ N + P+A+
Sbjct: 61 AEEGDTVTVGQVLGRIDEGAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAAR 120
Query: 109 KILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNNSR 168
K+ ++N L+ S + GTGK GR+ KEDVL L++ + +R
Sbjct: 121 KLAAENGLDASAV-KGTGKGGRVTKEDVLAALAAAAAAPAAPAAAAPA---AAPAPLGAR 176
Query: 169 LEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGF 228
EE VPM+RLR IAERLL++Q +A+LTTFNE++M ++DLR +YKD FEK+H VKLGF
Sbjct: 177 PEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGF 236
Query: 229 MSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIAD 288
MSFFVKAVV ALK+YP +NAS+DG++I+YH YYDIGIA+ + RGLVVP+LR+AD +S A+
Sbjct: 237 MSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAE 296
Query: 289 IEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKR 348
IEKKI E KA+D KL EE++GGTFTI+NGGVFGS++STPIINPPQSAILG+H IK+R
Sbjct: 297 IEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKER 356
Query: 349 VIVENNNVVIRPINYFALSYDHRIIDGREAVLSL 382
+ N +VIRP+ Y ALSYDHRIIDG+EAV L
Sbjct: 357 PVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFL 390
|
Length = 407 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 546 bits (1409), Expect = 0.0
Identities = 213/471 (45%), Positives = 295/471 (62%), Gaps = 18/471 (3%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M K +DV+VIGAGP GYVA+IR AQLG K A + E+ LGGTC NVGCIPSKAL
Sbjct: 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALV------EKGERLGGTCLNVGCIPSKAL 54
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L + E +++ EYGI+ + ++ +K+L RK+ +++ G+ L KKN + G
Sbjct: 55 LHAAEVIEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG 114
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
A F H +++ + KETITA IIIATGS+ R PG D IL + AL +
Sbjct: 115 EARFVDP-----HTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFL 169
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+ +PK L I+G G IGLE S++ LGS+VT++E L D EI+K+ L K G+
Sbjct: 170 LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGV 229
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
I+LNTK+ ++ + VL+ + T D +L+AIGR PNT+ L ++ G
Sbjct: 230 KILLNTKVTAVEKKDDGVLVTLEDGEG------GTIEADAVLVAIGRKPNTDGLGLENAG 283
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS-INFN 745
+++++ FI V+D TN+P IYAIGDV+ GPMLAH A EG + AE+I+G K + I++
Sbjct: 284 VELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYR 343
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P V++T PEIASVG TE+ K+ I Y VG FPF AN RA +GET G VK++ D ++
Sbjct: 344 LIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKET 403
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
ILG HI+GP ASELI E +AIE A++ED+A H HP+LSEA+KEAA
Sbjct: 404 GRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454
|
Length = 454 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 538 bits (1389), Expect = 0.0
Identities = 219/479 (45%), Positives = 315/479 (65%), Gaps = 22/479 (4%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
+DVIVIG GPGGYVA+IR AQLG K A + E LGGTC NVGCIP+KALL +
Sbjct: 1 AYDVIVIGGGPGGYVAAIRAAQLGLKVALV-------EKEYLGGTCLNVGCIPTKALLHS 53
Query: 450 SHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAI 509
+ ++ +K+ + GI +NV+++ +KM +RKN ++KK G+ L KKNK+ G A
Sbjct: 54 AEVYDEIKH-AKDLGIEVENVSVDWEKMQKRKNKVVKKLVGGVSGLLKKNKVTVIKGEAK 112
Query: 510 FTGKIQNNFHEIQIIN-KTKETITAKYIIIATGSKARSFPG-VKFDENLILSNKGALEMI 567
F + + +ET+ AK IIIATGS+ RS PG FD +++++ GAL +
Sbjct: 113 FLDP-----GTVSVTGENGEETLEAKNIIIATGSRPRSLPGPFDFDGKVVITSTGALNLE 167
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
VP+ L IIG GVIG+E SI+ LGS+VT++EM L D E++K L K+G+
Sbjct: 168 EVPESLVIIGGGVIGVEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVLQKALKKKGVK 227
Query: 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
I+ NTK+ + K + + Y NK +TE +T +K+L+A+GR PNT L ++K+G+
Sbjct: 228 ILTNTKV--TAVEKNDDQVTYENK--GGETETLTG--EKVLVAVGRKPNTEGLGLEKLGV 281
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS-INFNA 746
+++E I+V++ TN+P IYAIGDV+ GPMLAH A EGI+ AE+I+G++ + I+++A
Sbjct: 282 ELDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAHIDYDA 341
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P VIYT PE+ASVG TE+ K+ +G FPF AN +A LGET G VKI++D K+
Sbjct: 342 VPSVIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKALALGETDGFVKIIADKKTG 401
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
EILG HIIGP A+ELI+EA +A+E + E++AR H HP+LSEA+KEAA++ + I+
Sbjct: 402 EILGAHIIGPHATELISEAALAMELEGTVEELARTIHPHPTLSEAIKEAALAALGKPIH 460
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 534 bits (1377), Expect = 0.0
Identities = 176/478 (36%), Positives = 266/478 (55%), Gaps = 15/478 (3%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M V+V+GAGP GY A+ R A LG +T C++ + LGG C NVGCIPSKAL
Sbjct: 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYS------TLGGVCLNVGCIPSKAL 54
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L + E K + E+GI +++ KM RK ++K+ G+ + K K+ +G
Sbjct: 55 LHVAKVIEEAK-ALAEHGIVFGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG 113
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
FTG N E+ + I IIA GS+ P + D+ I + ALE+
Sbjct: 114 LGKFTG---GNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDPRIWDSTDALEL 170
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
VPK+L ++G G+IGLE+G+++ RLGSEV ++EM + D++I K + KQ
Sbjct: 171 KEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-F 229
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
NI+L TK+ ++ ++ + + K + + +D +L+A+GR+PN L+ +K G
Sbjct: 230 NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQR----YDAVLVAVGRVPNGKLLDAEKAG 285
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
++V+E FI V+ C TN+P+I+AIGD+V PMLAHK EG + AE I+G+KH +
Sbjct: 286 VEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKV 345
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P + YT PE+A VG TE+ K+ I Y FP+ A+ RA GM K++ D ++
Sbjct: 346 IPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETH 405
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+LG I+G A EL+ E +AIE +EDIA H HP+L E++ AA + E
Sbjct: 406 RVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAFEGSIT 463
|
Length = 471 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 508 bits (1311), Expect = e-173
Identities = 203/472 (43%), Positives = 287/472 (60%), Gaps = 20/472 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+DVIVIGAGPGGYVA+IR AQLG K A ++ K+ LGGTC N GCIPSKAL
Sbjct: 1 FAFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVE--KEK-----LGGTCLNRGCIPSKAL 53
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L + + ++S ++GI +NV ++ +K+ E KN ++ + G+ L KKNK+ G
Sbjct: 54 LHAAERADEARHSE-DFGIKAENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG 112
Query: 507 HAIFTGKIQNNFHEIQIIN-KTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
A + ++++ ++T TAK II+ATGS+ R PG++ D +I ++ AL
Sbjct: 113 EAKLVDP-----NTVRVMTEDGEQTYTAKNIILATGSRPRELPGIEIDGRVIWTSDEALN 167
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
+ VPK L +IG G IG+E S + LG+EVTI+E L D+EI+K A L K+G
Sbjct: 168 LDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRG 227
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
+ I K ++ + V + + K E + D +L+A+GR PNT NL ++++
Sbjct: 228 IKIKTGAKAKKVEQTDDGVTVTLEDGG---KEETLE--ADYVLVAVGRRPNTENLGLEEL 282
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
G+K + FI V++ TN+PNIYAIGD+V GPMLAHKA EGI+ AE I+G H I++
Sbjct: 283 GVKT-DRGFIEVDEQLRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNPHPIDYR 341
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P V YT PE+ASVG TE K+ V FPF N +A LGET G VK++ D K
Sbjct: 342 GIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKALALGETDGFVKLIFDKKD 401
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAM 857
E+LG H++G ASELI EA +AI + A+ ED+A H HP+LSEA+ EAA+
Sbjct: 402 GEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAAL 453
|
Length = 462 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 504 bits (1301), Expect = e-171
Identities = 175/479 (36%), Positives = 268/479 (55%), Gaps = 25/479 (5%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+ +DVIVIGAGP GYVA+ R A+LG K A I+ K LGGTC NVGCIPSKAL+
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIE--KGP-----LGGTCLNVGCIPSKALIA 54
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGIL-FLFKKNKIKFFHGH 507
+ +F K+ E+GI+ ++ +K++ R + G++ L KK KI G
Sbjct: 55 AAEAFHEAKH-AEEFGIHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGT 113
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGV-KFDENLILSNKGALEM 566
A F + +++ E I AK I+IATGS+ PGV + +L++ A E+
Sbjct: 114 ARFVDP-----NTVEV---NGERIEAKNIVIATGSRVPPIPGVWLILGDRLLTSDDAFEL 165
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+PK L +IG GVIGLE+G RLG +VT+ E L D E++K+A +L+K+
Sbjct: 166 DKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-F 224
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
I L K+ ++ + + + E D +L+A GR PNT+ L ++ G
Sbjct: 225 KIKLGAKVTSVEKSGDEKVEELEKGGKTETIE-----ADYVLVATGRRPNTDGLGLENTG 279
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQKHSINFN 745
++++E +V+++ +T++P IYA GDV P L H+A +EG + AE+ + ++
Sbjct: 280 IELDERGRPVVDEHTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYH 339
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P V++T P+IASVG TE+ LK I Y VG PF A RAR++G+ G VK+ +D K+
Sbjct: 340 PIPSVVFTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKT 399
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+LG HIIGP A LI A++ + ED+ R+ HP+LSE ++ A + ++ I
Sbjct: 400 GRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRDLFSKLI 458
|
Length = 460 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 467 bits (1205), Expect = e-157
Identities = 188/484 (38%), Positives = 283/484 (58%), Gaps = 20/484 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M K +D+++IG GPGGYVA+IR QLG KTA + E LGGTC + GCIPSKAL
Sbjct: 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALV-------EKGKLGGTCLHKGCIPSKAL 53
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L ++ F+ K + +GI+ L+ K+ ERK+ I+ + G+ L KK KI FHG
Sbjct: 54 LHSAEVFQTAKKAS-PFGISVSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG 112
Query: 507 HA-IFTGKIQNNFH---EIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKG 562
I I + ++ E I + ++IATGS+ PG+ FD ++S+
Sbjct: 113 IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVELPGLPFDGEYVISSDE 172
Query: 563 ALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622
AL + +PK L I+G GVIGLE S+ G EVT++E + L T D E++K+ LL
Sbjct: 173 ALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLK 232
Query: 623 KQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
K G+ ++ K+ + + K+ VLI N + + + + DK+L+++GR PNT +
Sbjct: 233 KLGVRVVTGAKVLGLTLKKDGGVLIV---AEHNGEEKTLEA--DKVLVSVGRRPNTEGIG 287
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-H 740
++ + V E FI ++D C+T +IYAIGDV+ P LAH A EG M AEHI+G+K
Sbjct: 288 LENTDIDV-EGGFIQIDDFCQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPR 346
Query: 741 SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKIL 800
++ A+P YT PE+ASVG TE+ K+ VG FPF AN +A GE+ G VK++
Sbjct: 347 PFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFPFAANGKALTYGESDGFVKVV 406
Query: 801 SDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860
+D + +ILG+ +GP +ELI+E +A+E A ++A H HP+LSEA++EAA++ +
Sbjct: 407 ADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALAAD 466
Query: 861 NRSI 864
++
Sbjct: 467 GHAL 470
|
Length = 472 |
| >gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) | Back alignment and domain information |
|---|
Score = 458 bits (1181), Expect = e-154
Identities = 185/389 (47%), Positives = 276/389 (70%), Gaps = 19/389 (4%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
IE+K+P+L+ESI+E T+ WHKK G+ V R+EN+++IETDKV+LE+P+P DG++ +I+
Sbjct: 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFK 60
Query: 64 DGSIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNLNT-------------IVMPSAKKI 110
+G V S QV+A+++ ++ ++ + + P+A+++
Sbjct: 61 EGDTVESGQVLAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRL 120
Query: 111 LSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNNSRLE 170
++ +++S + GTG GR+ KED++K + + + + N +R E
Sbjct: 121 AKEHGIDLSAVP-GTGVTGRVTKEDIIKKTEAPASAQQPAPAAAAK-----APANFTRPE 174
Query: 171 ECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMS 230
E V M+RLR IAERL ++Q ++A+LTTFNE++M ++++LR +YK++FEK+H VKLGFMS
Sbjct: 175 ERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMS 234
Query: 231 FFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIE 290
FFVKAVV+ALK++P +NA +DG++I+Y YYDI +A+S+ RGLVVP++RNAD MS ADIE
Sbjct: 235 FFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIE 294
Query: 291 KKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVI 350
K+I + KA+D KL E+M+GGTFTI+NGGVFGS++STPIINPPQSAILG+H IK+R +
Sbjct: 295 KEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPV 354
Query: 351 VENNNVVIRPINYFALSYDHRIIDGREAV 379
N + IRP+ Y ALSYDHR+IDG+EAV
Sbjct: 355 AVNGQIEIRPMMYLALSYDHRLIDGKEAV 383
|
This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403 |
| >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 443 bits (1140), Expect = e-147
Identities = 204/479 (42%), Positives = 295/479 (61%), Gaps = 19/479 (3%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
++DV++IG GPGGY A+IR QLG K AC+ E LGGTC NVGC+PSKALL
Sbjct: 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACV------EGRSTLGGTCLNVGCMPSKALLH 55
Query: 449 TSHSFEN-VKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
S +E F GI + TLNL +M+++K+ ++ G+ FLF+KNK+ + G
Sbjct: 56 ASELYEAASGGEFAHLGIEVKP-TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGW 114
Query: 508 AIF--TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
GK+ + ++ + AK I+IATGS+ PGV D I+ + GAL
Sbjct: 115 GRLDGVGKVVVKAED-----GSETQLEAKDIVIATGSEPTPLPGVTIDNQRIIDSTGALS 169
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
+ VPK L +IGAGVIGLE+GS+WRRLG++VT++E D E AK L KQG
Sbjct: 170 LPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQG 229
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
+ L +K+ + V + + E + + D +L+AIGR P T L ++ +
Sbjct: 230 MKFKLGSKVTGATAGADGVSLTLE-PAAGGAAETLQA--DYVLVAIGRRPYTQGLGLETV 286
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
GL+ ++ ++ ND+ T++P ++ IGDV GPMLAHKAE+E + E I+G+ +N+
Sbjct: 287 GLETDKRG-MLANDHHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNYG 345
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P VIYT PE+A+VGKTE+ LK +Y VG FPF ANSRA+I ET G KIL+D ++
Sbjct: 346 LIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKILADART 405
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
DE+LG+H++GP SE+I E +A+EF AS+EDIA CH HP+ SEA+++AAM++E ++
Sbjct: 406 DEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGWAM 464
|
Length = 466 |
| >gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 380 bits (977), Expect = e-124
Identities = 169/399 (42%), Positives = 252/399 (63%), Gaps = 23/399 (5%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
IE+K+P L E+++E T++ W KK G+ V + L+++ETDK +E+PAP G++ KI+
Sbjct: 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60
Query: 62 ITDGSIVTSNQVIALIDTDISKLSSKTEI-------------KNKKDIKNLNTIVMPSAK 108
+ +G V VIA I+ + + + E + P+ +
Sbjct: 61 VEEGDTVPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVR 120
Query: 109 KILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNNSR 168
++ + +++SK+ GTG GRI K+DV + E+ P + + + +
Sbjct: 121 RLAREAGIDLSKVK-GTGPGGRITKKDV------EAAVAEKAAAAAAPAPAAAAPASAAG 173
Query: 169 LEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGF 228
EE VPMSR+R IAER+++S+ LT FNE++M ++ LR K K++FEK+ VKL F
Sbjct: 174 EEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTF 232
Query: 229 MSFFVKAVVSALKQYPIINASVDGNN--IIYHKYYDIGIAISSSRGLVVPILRNADTMSI 286
+SF VKAVV ALK++P +NAS+DG+ I+YHKY +IGIA+ + RGLVVP++R+AD S+
Sbjct: 233 LSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSL 292
Query: 287 ADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIK 346
A+I K+I + KA+D KL PEEM GGTFTISN G+FGS++ TPIINPPQ AILGV AI+
Sbjct: 293 AEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIE 352
Query: 347 KRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF 385
+R +V +V+RP+ Y +LSYDHR+IDG EA L++
Sbjct: 353 ERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVAL 391
|
Length = 404 |
| >gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 372 bits (957), Expect = e-121
Identities = 168/379 (44%), Positives = 227/379 (59%), Gaps = 26/379 (6%)
Query: 6 VKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDG 65
+K+P + +SISE T++ W KK G+ V +E + IETDKV +++ AP G+I KI +G
Sbjct: 47 IKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEG 106
Query: 66 SIVTSNQVIALIDTDISKLSSKTEIKNKKDIKNLNTIVMPSAKKILSDNNLEISKINNGT 125
V ++ IDT P A + + K
Sbjct: 107 DTVEVGAPLSEIDTG----------------------GAPPAAAPAAAAAAKAEKTTPEK 144
Query: 126 GKDGRIIKEDVL--KVLSSIKNINEEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIA 183
K E K E KP ++ + E VPMSR+R IA
Sbjct: 145 PKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARAD--PRETRVPMSRMRQRIA 202
Query: 184 ERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQY 243
ERL SQ A+LTTFNE +M ++++LR +YKD F+K+H VKLGFMS FVKA ALK+
Sbjct: 203 ERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKM 262
Query: 244 PIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDN 303
PI+NA +DG+ I+Y Y DI +A+++ GLVVP++RN + S A+IEK++ + KA++N
Sbjct: 263 PIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNN 322
Query: 304 KLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINY 363
KL E+M+GGTFTISNGGVFGS++ TPIINPPQSAILG+HAIKKR +V N +VIRPI Y
Sbjct: 323 KLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMY 382
Query: 364 FALSYDHRIIDGREAVLSL 382
AL+YDHR+IDGR+AV L
Sbjct: 383 LALTYDHRLIDGRDAVTFL 401
|
Length = 418 |
| >gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
|---|
Score = 367 bits (945), Expect = e-119
Identities = 130/400 (32%), Positives = 216/400 (54%), Gaps = 36/400 (9%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
E K+P L E ++E ++ W K G+ V + L ++ETDK +E+P+P G + K+++
Sbjct: 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVE 62
Query: 64 DGSIVTSNQVIALIDTD-------------------------ISKLSSKTEIKNKKDIKN 98
+G +V VIA+I+ + + ++
Sbjct: 63 EGDVVPVGSVIAVIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAA 122
Query: 99 LNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYL 158
P+ +K+ + +++S + G+G GRI KEDV ++
Sbjct: 123 AAAKASPAVRKLARELGVDLSTVK-GSGPGGRITKEDVEAAAAA-----AAPAAAAAAAA 176
Query: 159 DSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKF 218
+ + EE VP+S +R IA+R+++S+ T +E+++ +++ LR K
Sbjct: 177 AAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALR-----KQ 231
Query: 219 EKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPIL 278
K VKL F +KAV ALK++P +NAS D + I+ KY +IGIA+++ GL+VP++
Sbjct: 232 LKAIGVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVI 291
Query: 279 RNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSA 338
R+AD S+ ++ ++I + KA++ KL PEE+ GGTFTISN G+FG TPIINPP+ A
Sbjct: 292 RDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVA 351
Query: 339 ILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
ILGV AI +R +V + +V+R + +LS+DHR+IDG +A
Sbjct: 352 ILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADA 391
|
Length = 411 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 352 bits (906), Expect = e-113
Identities = 184/493 (37%), Positives = 270/493 (54%), Gaps = 40/493 (8%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE--WKDNEENFALGGTCTNVGCIPSK 444
M ++DV+V+GAGPGGYVA+IR AQLG KTA +++ W GG C NVGCIPSK
Sbjct: 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKYW---------GGVCLNVGCIPSK 51
Query: 445 ALLQTS---HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKI 501
ALL+ + H F +F GI+ + VT + +R + + G+ FL KKNKI
Sbjct: 52 ALLRNAELAHIFTKEAKTF---GISGE-VTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKI 107
Query: 502 KFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENL----- 556
HG+ FT N E+ + + ET+T IIATGS R PG EN+
Sbjct: 108 TEIHGYGTFTD---ANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENVVTYEE 164
Query: 557 -ILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK 615
ILS +PK + I GAG IG+E + + G +VTI+E L D E++K
Sbjct: 165 QILSR-------ELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSK 217
Query: 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675
+ K G+ I+ TK+ I N V + S K K + + + DK+L AIG P
Sbjct: 218 EIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDG--KAQELEA--DKVLQAIGFAP 273
Query: 676 NTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
++K G+ + + I ++D TN+P+IYAIGDV LAH AE +G++ AE I
Sbjct: 274 RVEGYGLEKTGVALTDRGAIAIDDYMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETI 333
Query: 736 SG-QKHSI-NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGET 793
+G + + ++ +P + P++AS G TE+ ++ V FPF AN +A LG+
Sbjct: 334 AGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDP 393
Query: 794 SGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMK 853
+G VK+++D K E+LG H+IGP SEL+ E +A ++ ++E++AR H HP+LSEA+K
Sbjct: 394 TGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALK 453
Query: 854 EAAMSIENRSINY 866
EA + IN+
Sbjct: 454 EAFHGLAGHMINF 466
|
Length = 466 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 345 bits (887), Expect = e-110
Identities = 177/469 (37%), Positives = 265/469 (56%), Gaps = 24/469 (5%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHS 452
++VIG GP GYVA+I AQ G IDE LGGTC N GC+P+K+LL+++
Sbjct: 3 LVVIGGGPAGYVAAITAAQNGKNVTLIDEAD-------LGGTCLNEGCMPTKSLLESAEV 55
Query: 453 FENVKNSFFEYGI--NTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
+ VK + +GI +++++ ++M RK+ I+ + GI +L KKNKIK G A F
Sbjct: 56 HDKVKKAN-HFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASF 114
Query: 511 TGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV 569
H +++ K E + A+ IIA GS+ P FD I+++K A+ + ++
Sbjct: 115 ETD-----HRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKWIINSKHAMSLPSI 169
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
P L I+G GVIG E SI+ RLG++VTI+EM+ L DE+IA L G+ I
Sbjct: 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIF 229
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689
+ + K+ L Y V E + L+++GR P LN++K G++
Sbjct: 230 TGAALKGLNSYKKQALFEYEGSIQEVNAEFV-------LVSVGRKPRVQQLNLEKAGVQF 282
Query: 690 NENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPF 749
+ N I VN++ +TN+P+IYA GDV+ G LAH A EG A H SG+ +N++A+P
Sbjct: 283 S-NKGISVNEHMQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPR 341
Query: 750 VIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEIL 809
IYT PEIASVG TE+ ++ +G FPF AN +A I+GE +G VK++ + K EI+
Sbjct: 342 CIYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKALIIGEQTGKVKVIVEPKYQEIV 401
Query: 810 GIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMS 858
GI IIGP A+ELI + + I +++ + HP+LSEA+ EA +
Sbjct: 402 GISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQ 450
|
Length = 458 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 325 bits (835), Expect = e-102
Identities = 146/477 (30%), Positives = 240/477 (50%), Gaps = 28/477 (5%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+ +D IVIGAG G + R A LG K A I E LGGTC N GC+P+K L
Sbjct: 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALI-------ERGLLGGTCVNTGCVPTKTL 54
Query: 447 LQTSHSFENVKNSFFEYGIN-TQNVTLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFF 504
+ ++ + + + EYG++ V+++ + ++ RK I ++ G + + F
Sbjct: 55 IASARAAHLARRAA-EYGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVF 113
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLILSNKG 562
GHA F + +++ ET+ AK I I TG++A PG+ DE L+N+
Sbjct: 114 RGHARFESP-----NTVRVGG---ETLRAKRIFINTGARAAIPPIPGL--DEVGYLTNET 163
Query: 563 ALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622
+ +P+ L IIG G IGLE ++RR GSEVT++E L DE++A +L
Sbjct: 164 IFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILE 223
Query: 623 KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNI 682
++G+++ LN + ++ + + + + EI +L+A+GR+PNT++L +
Sbjct: 224 REGIDVRLNAECIRVERDGDGIAVGLD--CNGGAPEIT---GSHILVAVGRVPNTDDLGL 278
Query: 683 DKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQKHS 741
+ G++ + +I V+D T P IYA GD H A + +VA ++ G +
Sbjct: 279 EAAGVETDARGYIKVDDQLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRK 338
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILS 801
++ +P+ YT P +A VG TE +K VG P RA GET G +K++
Sbjct: 339 VSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVVV 398
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMS 858
D +D ILG I+G E+I E + A+ A ++R H+HP++SE + A +
Sbjct: 399 DADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQA 455
|
Length = 463 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 320 bits (821), Expect = e-100
Identities = 141/472 (29%), Positives = 251/472 (53%), Gaps = 26/472 (5%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+D+++IG+G + A+I+ A+LG A + E LGGTC NVGC+PSK LL+ +
Sbjct: 1 YDLVIIGSGAAAFAAAIKAAELGASVAMV-------ERGPLGGTCVNVGCVPSKMLLRAA 53
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKK-NNSGILFLFKKNKIKFFHGHAI 509
+ F G V ++ ++LE K ++++ + + + + G A
Sbjct: 54 EVAHYARKPPF--GGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRAR 111
Query: 510 FTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLILSNKGALEMI 567
F +++ + +E AK +IATG++ PG+K E L+++ AL +
Sbjct: 112 FKDP-----KTVKV-DLGREVRGAKRFLIATGARPAIPPIPGLK--EAGYLTSEEALALD 163
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
+P+ L +IG G IG+E+ + RLGSEVTIL+ S L + EI+ L ++G+
Sbjct: 164 RIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIE 223
Query: 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
++ + ++ + + +I + + D+LL+A GR PNT+ L ++K G+
Sbjct: 224 VVTSAQVKAVSVRGGGKIITVE---KPGGQGEVEA--DELLVATGRRPNTDGLGLEKAGV 278
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEH-ISGQKHSINFNA 746
K++E I+V++ T+ P IYA GDV G L + A +EG++ AE+ + G ++
Sbjct: 279 KLDERGGILVDETLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLV 338
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P V++T P +ASVG TE +K I + P RARI +T G +K++++ +
Sbjct: 339 IPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTG 398
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMS 858
++LG+ ++ P A+E+I EA +AI + +D+ H P+++E +K AA +
Sbjct: 399 KVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQT 450
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 310 bits (797), Expect = 8e-97
Identities = 159/482 (32%), Positives = 260/482 (53%), Gaps = 36/482 (7%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
++D++VIG+GP G A+++ A+LG + A I E +GG CT+ G IPSKAL +
Sbjct: 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAVI------ERYRNVGGGCTHTGTIPSKALREA 58
Query: 450 SHSFENV-KNSFF-EYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
+N + Y + +T +L R +++I K +++N++ G
Sbjct: 59 VLRLIGFNQNPLYSSYRV-KLRITF--ADLLARADHVINKQVEVRRGQYERNRVDLIQGR 115
Query: 508 AIFTGKIQNNFHEIQII--NKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
A F H +++ + ET+TA I+IATGS+ P V FD I + L
Sbjct: 116 ARFVDP-----HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILS 170
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKK-AFHLLNKQ 624
+ ++P+ L I GAGVIG E SI+ LG +VT++ L+ +D+EI+ ++HL +
Sbjct: 171 LDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRD-S 229
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ I N ++ ++ + V+++ + +K D LL A GR NT+ LN++
Sbjct: 230 GVTIRHNEEVEKVEGGDDGVIVHLKSGKK-IKA-------DCLLYANGRTGNTDGLNLEN 281
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ--KHSI 742
GL+ + + VN+N +T +P+IYA+GDV+ P LA + ++G + A+H G+ H I
Sbjct: 282 AGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLI 341
Query: 743 NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSD 802
+P IYT PEI+SVGKTEQ L + Y VG F +RA+I G+ GM+KIL
Sbjct: 342 ED--IPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFH 399
Query: 803 MKSDEILGIHIIGPMASEL--IAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860
++ EILG+H G A+E+ I +A+ +E + + E +P+++EA + AA+
Sbjct: 400 RETLEILGVHCFGERATEIIHIGQAI--MEQKGTIEYFVNTTFNYPTMAEAYRVAALDGL 457
Query: 861 NR 862
NR
Sbjct: 458 NR 459
|
Length = 461 |
| >gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component | Back alignment and domain information |
|---|
Score = 297 bits (762), Expect = 6e-92
Identities = 161/385 (41%), Positives = 230/385 (59%), Gaps = 36/385 (9%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
+E +P + ESI++ TL + KK GE V +E + IETDKV +++ +P G+I + ++
Sbjct: 92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVK 151
Query: 64 DGSIVTSNQVIALIDTD---ISKLSSKTEIKNKKDIKNLNTIVMPSAKKILSDNNLEISK 120
+G V +A+I S+++ +I D K PS
Sbjct: 152 EGDTVEPGTKVAIISKSEDAASQVTPSQKIPETTDPK-------PSPP------------ 192
Query: 121 INNGTGKDGRIIKEDVLKVLSSIKNINEE---KQEKYKPYLDSISIKNNSRLEECVPMSR 177
+D + K + V K + KQ +P L E VPM+R
Sbjct: 193 -----AEDKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLPP------KERERRVPMTR 241
Query: 178 LRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVV 237
LR +A RL SQ A+LTTFNE++M +++ LR +YKD F ++H VKLG MS F+KA V
Sbjct: 242 LRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAV 301
Query: 238 SALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFI 297
SAL+ P++NA +DG++IIY Y DI IA+ +S+GLVVP++R AD M+ A+IEK IN
Sbjct: 302 SALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLA 361
Query: 298 NKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVV 357
KA + + +EM+GG+FT+SNGGV+GS++STPIINPPQSAILG+H+I R +V +VV
Sbjct: 362 KKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVV 421
Query: 358 IRPINYFALSYDHRIIDGREAVLSL 382
RP+ Y AL+YDHR+IDGREAV L
Sbjct: 422 PRPMMYVALTYDHRLIDGREAVYFL 446
|
Length = 463 |
| >gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 284 bits (730), Expect = 4e-86
Identities = 128/414 (30%), Positives = 213/414 (51%), Gaps = 40/414 (9%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
++EVK+P + E I+E ++ W K G+ V +++LI +ETDK +E+P+P G++ +I
Sbjct: 118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIK 176
Query: 62 ITDGSIVTSNQVIALIDTDI----SKLSSKTEIKNKKDIKNLN----------------- 100
+ G V+ ++ +I+ + +
Sbjct: 177 VKVGDKVSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA 236
Query: 101 ------TIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK----VLSSIKNINEEK 150
P+ +++ + +++S++ GTGK GRI KEDV +S+
Sbjct: 237 AAPGKAPHASPAVRRLARELGVDLSQVK-GTGKKGRITKEDVQAFVKGAMSAAAAAAAAA 295
Query: 151 QEKYKPYLDSISIK--NNSRLE--ECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQS 206
L + + S+ E P+SR++ A L +S +T F+E ++
Sbjct: 296 AAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITD 355
Query: 207 IIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVD--GNNIIYHKYYDIG 264
+ LR + K + EK VKL + FF+KAVV+ALK++P+ NAS+D G+ + Y KY++IG
Sbjct: 356 LEALRKQLKKEAEKA-GVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIG 414
Query: 265 IAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFG 324
A+ + GLVVP++++ D S+ +I ++I E KA+D KL P++M GG FTIS+ G G
Sbjct: 415 FAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIG 474
Query: 325 SMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
TPIIN P+ AILGV + + + + V R + +LSYDHR+IDG A
Sbjct: 475 GTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPLSLSYDHRVIDGATA 528
|
Length = 547 |
| >gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | Back alignment and domain information |
|---|
Score = 255 bits (655), Expect = 9e-80
Identities = 94/195 (48%), Positives = 137/195 (70%), Gaps = 2/195 (1%)
Query: 186 LLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPI 245
+ +S+ T +E+++ +++ LR K K+ +KE +KL F+ F VKAV ALK++P
Sbjct: 1 MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKEG-LKLTFLDFLVKAVALALKEFPE 59
Query: 246 INASVDGNN-IIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNK 304
+NAS DG+ I+Y KY +IGIA+++ GL+VP++RNAD S+ +I K+I + +A+D K
Sbjct: 60 LNASWDGDAEIVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDGK 119
Query: 305 LLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYF 364
L PE++ GGTFTISN G+FG TPIINPPQ AILGV AI+KR +V + +VIR +
Sbjct: 120 LKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGAIRKRPVVVDGEIVIRKVMPL 179
Query: 365 ALSYDHRIIDGREAV 379
+LS+DHR+IDG EA
Sbjct: 180 SLSFDHRVIDGAEAA 194
|
These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 5e-73
Identities = 133/476 (27%), Positives = 223/476 (46%), Gaps = 44/476 (9%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLA-QLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445
M K++D+IVIG G GG +AS A G K A I E LGGTC NVGC+P K
Sbjct: 1 MTKDYDLIVIGGGSGG-IASANRAAMYGAKVALI-------EAKRLGGTCVNVGCVPKKL 52
Query: 446 LLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
+ + E + YG + + K++ ++ I + + + N +
Sbjct: 53 MWYGAQIAEAFHDYAPGYGFDVTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIE 112
Query: 506 GHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
G A F H +++ E TA +I+IATG + S P + E I S+ G
Sbjct: 113 GFARFVDA-----HTVEV---NGERYTADHILIATGGRP-SIPDIPGAEYGITSD-GFFA 162
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
+ +PK++ ++GAG I +E + LGSE + L D +I + + K+G
Sbjct: 163 LEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKG 222
Query: 626 LNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
+ + N ++ N + L + + T D L+ AIGR PNT+ L ++
Sbjct: 223 IRLHTNAVPKAVEKNADGSLTLTLEDGETL--------TVDCLIWAIGREPNTDGLGLEN 274
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK--HSI 742
G+K+NE +IIV++ TN+P IYA+GDV L A G ++E + K +
Sbjct: 275 AGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKL 334
Query: 743 NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF--PF------LANSRARILGETS 794
+++ +P V+++ P I +VG TE+ ++ NV ++ F L R
Sbjct: 335 DYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSFTPMYTALTGHRQPC----- 389
Query: 795 GMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
++K++ K ++++G+H IG A E+I +AI+ A+ D +HP+ +E
Sbjct: 390 -LMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444
|
Length = 450 |
| >gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 1e-71
Identities = 139/440 (31%), Positives = 223/440 (50%), Gaps = 64/440 (14%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
EVK+P+L ES++E T+ +W K G+ V +E L+++ TDKV E+P+P G + +I +
Sbjct: 128 EVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIRAPE 187
Query: 65 GSIVTSNQVIALIDTDISKLSSKTEIKN--------------KKDIKNL----------- 99
V V+A+I + + E + +
Sbjct: 188 DDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAP 247
Query: 100 -----------------NTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142
V P +K+ D +++S + GTG GRI K+DVL +
Sbjct: 248 AKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVK-GTGVGGRIRKQDVLAAAKA 306
Query: 143 IKNINEEKQEKYKPYLDSISIKNNSRLEECVP-----------MSRLRLCIAERLLQSQA 191
+ E + P + + + P M+R+R A++ ++S
Sbjct: 307 AE---EARAAAAAPAAAAAPAAPAAAAKPAEPDTAKLRGTTQKMNRIRQITADKTIESLQ 363
Query: 192 NSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASV- 250
SA LT +E++M + LR + K+ F +++ V L F+ FFV+AV ALK +P +NAS
Sbjct: 364 TSAQLTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNVNASYN 423
Query: 251 -DGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEE 309
+ + YH +GIA+ + RGL+VP++ NA +S+ + K IN+ +A+DNKL P+E
Sbjct: 424 AETKEVTYHDVEHVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNKLKPDE 483
Query: 310 MSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKR--VIVE---NNNVVIRPINYF 364
+SGGTFTI+N G G++ TPI+NPPQ+AILG AI KR VI + ++ IR + Y
Sbjct: 484 LSGGTFTITNIGSGGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGESIAIRSVCYL 543
Query: 365 ALSYDHRIIDGREAVLSLMS 384
L+YDHR++DG +A L +
Sbjct: 544 PLTYDHRLVDGADAGRFLTT 563
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579 |
| >gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (614), Expect = 9e-69
Identities = 172/598 (28%), Positives = 265/598 (44%), Gaps = 93/598 (15%)
Query: 345 IKKRVIV-ENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF----IMN---KNFDVIVI 396
I E+ ++ + LS E L F MN + +DV +I
Sbjct: 66 ISLGASKQESPGILTPMPSSARLSSPQP---RSEKSLRANGFATSQSMNFSDEEYDVGII 122
Query: 397 GAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENV 456
G G GG+ A+I + G K D ++GGTC NVGCIPSKALL + + +
Sbjct: 123 GCGVGGHAAAINAMERGLKVIIFTGDDD-----SIGGTCVNVGCIPSKALLYATGKYREL 177
Query: 457 KN--SFFEYGINTQ------------------NVTLNLQKMLERKNNIIKKNNSGILFLF 496
KN + YGI T V +++ K+ E ++I K GI
Sbjct: 178 KNLAKLYTYGIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGL 237
Query: 497 KKNKIKFFHGHAIFTGKIQNNFHEIQIIN--KTKETITAKYIIIATGSKARSFPGVKFDE 554
K K H + + + + I K+ + K IIIATGS ++ D+
Sbjct: 238 KSKKFCKNSEHVQVIYE-RGHIVDKNTIKSEKSGKEFKVKNIIIATGSTPNIPDNIEVDQ 296
Query: 555 NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIA 614
+ ++ A+++ + + I+G G+IGLE I+ LGSEV E S L +D ++A
Sbjct: 297 KSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVA 356
Query: 615 KKAFHLLNK-QGLNIILNTKIHDIKINKEN--VLINYSNKST-------NVKTEIITSIF 664
K + K + + + LNT I ++ K N V+I +S + T +I +
Sbjct: 357 KYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYV 416
Query: 665 DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN------IPNIYAIGDVVRGP 718
D L+A GR PNTNNL +DK+ +++ F+ V+++ NI+ IGD
Sbjct: 417 DSCLVATGRKPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQ 475
Query: 719 MLAHKAEEEGIMVAEHISGQKHS-------------INFNALPFVIYTFPEIASVGKTEQ 765
MLAH A + + V + I G+ I + +P V YT PE+A +G TE+
Sbjct: 476 MLAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSVCYTTPELAFIGLTEK 535
Query: 766 YLKKHNISYNVG--IFPFLANSRA----------------------RILGETSGMVKILS 801
K+ NVG I + ANS+ + T GMVKI+
Sbjct: 536 EAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVY 595
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI 859
+ EILG+ I+G AS LI E V+AI + S +D+A + H HP++SE + A +I
Sbjct: 596 LKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAI 653
|
Length = 659 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 6e-66
Identities = 95/331 (28%), Positives = 148/331 (44%), Gaps = 51/331 (15%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV++IG GP G A+IRLA+LG K A I+ GGTC N GC+P K LL+ +
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIER---------EGGTCYNRGCLPKKLLLEVAE 51
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFT 511
E L + K+ G+ L + G
Sbjct: 52 GLELAIG-------------------LALPEEVYKEF--GVEVLLGTEVVDIDRGEKTVV 90
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF--PGVKFDENLILSN-KGALEMIN 568
K +T IT +IIATG++ R PGV+ + + LE++
Sbjct: 91 LKD----------VETGREITYDKLIIATGARPRIPGIPGVEVATLRGVIDSDEILELLE 140
Query: 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628
+PK++ ++G G IGLE+ + +LG EVT++E L D+EI+ L K L +
Sbjct: 141 LPKRVVVVGGGYIGLELAAALAKLGKEVTVVERRDRLLARADDEISAALLEKLEKLLLGV 200
Query: 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
T + + + + E+ D +L+AIGR PNT L ++ G++
Sbjct: 201 ---TVLLVVVVVVKVGDGKVVEVKLGDGEELDA---DVVLVAIGRRPNTELL--EQAGVE 252
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPM 719
++E +I+V++ T++P IYA GDV G
Sbjct: 253 LDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Score = 226 bits (579), Expect = 5e-64
Identities = 108/414 (26%), Positives = 194/414 (46%), Gaps = 41/414 (9%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
+ +V +P + E + K G+ V ++LI +E DK +E+PAP G + +I
Sbjct: 205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIK 262
Query: 62 ITDGSIVTSNQVIALIDTDISKLSS--------------------------KTEIKNKKD 95
+ G V + +I + + + ++ K E K++
Sbjct: 263 VNVGDKVKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFA 322
Query: 96 IKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK-VLSSIKNINEEKQEKY 154
+ P +++ + + ++K+ GTG+ GRI+KEDV V ++K
Sbjct: 323 ENDAYVHATPLVRRLAREFGVNLAKVK-GTGRKGRILKEDVQAYVKDAVKRAEAAPAAAA 381
Query: 155 K----PYLDSISIKNNSRLEEC--VPMSRLRLCIAERLLQSQANSAILTTFNEINMQSII 208
P L + S+ E V + R++ L ++ +T F++ ++ +
Sbjct: 382 AGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELE 441
Query: 209 DLRLKYKDK--FEKEHNVKLGFMSFFVKAVVSALKQYPIINASV--DGNNIIYHKYYDIG 264
R K ++ +++ VK+ + F +KAV +AL+Q P N+S+ DG + KY +IG
Sbjct: 442 AFR-KQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIG 500
Query: 265 IAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFG 324
IA+ + GLVVP+ ++ + I ++ +++ + KA+D KL +M GG FTIS+ G G
Sbjct: 501 IAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLG 560
Query: 325 SMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
+ TPI+N P+ AILGV + R + +LSYDHR+IDG +
Sbjct: 561 TTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDGADG 614
|
Length = 633 |
| >gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 4e-63
Identities = 124/427 (29%), Positives = 203/427 (47%), Gaps = 49/427 (11%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
++ +P LS +++ L W KKEG+ V + + +IETDK +E A ++G + KI++ +
Sbjct: 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60
Query: 65 GS-IVTSNQVIALIDTD---------------------------------ISKLSSKTEI 90
G+ V N+ IA++ + K S +
Sbjct: 61 GTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQK 120
Query: 91 KNKKDIKNLNTIVM---------PSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLS 141
++ + P AKK+ + +++S + G+G +GRI+K+D+ +
Sbjct: 121 QSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA-GSGPNGRIVKKDIESFVP 179
Query: 142 SIKNINEEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNE 201
++ P + ++ E VP+S +R IA+RLL+S+ E
Sbjct: 180 QSPASANQQAAATTPATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIE 239
Query: 202 INMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYY 261
N+ ++ LR + + KL F +KA AL++ P N+S N I +K
Sbjct: 240 CNVDKLLALRKELNAMASEV--YKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNV 297
Query: 262 DIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGG 321
DI +A+++ GL+ PI+RNAD ++ I +I + +A++NKL PEE GGTFTISN G
Sbjct: 298 DISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLG 357
Query: 322 VFGSMLSTPIINPPQSAILGVHAIKKRVIVEN---NNVVIRPINYFALSYDHRIIDGREA 378
+FG T IINPPQ+ IL V A++ +V+N + I LS DHR+IDG
Sbjct: 358 MFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVG 417
Query: 379 VLSLMSF 385
L SF
Sbjct: 418 AEFLKSF 424
|
This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 4e-61
Identities = 135/470 (28%), Positives = 219/470 (46%), Gaps = 40/470 (8%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
++D+ VIGAG GG A+ A LG K A E F +GGTC GC+P K ++
Sbjct: 2 DYDLFVIGAGSGGVRAARLAAALGAKVAIA-------EEFRVGGTCVIRGCVPKKLMVYA 54
Query: 450 SH---SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
S FE+ YG + +K+L K+ I + + + G
Sbjct: 55 SQFAEHFEDAAG----YGWTVGKARFDWKKLLAAKDQEIARLSGLYRKGLANAGAELLDG 110
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLILSNKGAL 564
A G + ++++ K T TA+ I+IA G + + PG E I SN+ A
Sbjct: 111 RAELVGP-----NTVEVLASGK-TYTAEKILIAVGGRPPKPALPGH---ELGITSNE-AF 160
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+ +PK + I G G I +E I+R LG + T++ L D+++ + L ++
Sbjct: 161 HLPTLPKSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRGFDDDMRRGLAAALEER 220
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ I+ I I + + L K+T K E I + D +L A GR PNTN L ++
Sbjct: 221 GIRILPEDSITSISKDDDGRL-----KATLSKHEEI--VADVVLFATGRSPNTNGLGLEA 273
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAE-HISGQKHSIN 743
G+++N+ I V++ T+ P+IYA+GDV L A E AE S +
Sbjct: 274 AGVRLNDLGAIAVDEYSRTSTPSIYAVGDVTDRINLTPVAIHEATCFAETEFGNNPTSFD 333
Query: 744 FNALPFVIYTFPEIASVGKTE-QYLKKHN--ISYNVGIFPFLANSRARILGETSGMVKIL 800
+ + +++ P I +VG TE + +K Y P A R + ++K++
Sbjct: 334 HDLIATAVFSQPPIGTVGLTEEEARRKFGDIEVYRAEFRPMKATFSGR---QEKTLMKLV 390
Query: 801 SDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
D K D++LG H++GP A+E+I IA++ A+ +D VHP+ +E
Sbjct: 391 VDAKDDKVLGAHMVGPDAAEIIQGLAIALKMGATKDDFDSTVAVHPTSAE 440
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 3e-60
Identities = 131/468 (27%), Positives = 229/468 (48%), Gaps = 45/468 (9%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL-GGTCTNVGCIPSKALL 447
+D+IVIG G G + +LA G K A + EE+ A+ GGTC N+GCIP+K LL
Sbjct: 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALV------EESKAMYGGTCINIGCIPTKTLL 55
Query: 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
+ KN FE + T+N + L KN + + + +
Sbjct: 56 VAAE-----KNLSFEQVMATKNTVTS---RLRGKNYAMLAGSG----------VDLYDAE 97
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP--GVKFDENLILSNKGALE 565
A F + N E+Q K +TA+ I+I TG+ + P G+ +++ S G
Sbjct: 98 AHF---VSNKVIEVQA-GDEKIELTAETIVINTGAVSNVLPIPGLADSKHVYDST-GIQS 152
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
+ +P++L IIG G IGLE ++ +LGS+VT+L+ +S L + +A A + + G
Sbjct: 153 LETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDG 212
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
+ +LN ++K + + VL+ T +T FD LL A GR PNT L ++
Sbjct: 213 ITFLLNAHTTEVKNDGDQVLV-----VTEDETY----RFDALLYATGRKPNTEPLGLENT 263
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK---HSI 742
+++ E I V+D C+T++P ++A+GDV GP + + ++ +V +++G
Sbjct: 264 DIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLE- 322
Query: 743 NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSD 802
+ +P ++ P ++ VG TE+ K+ + Y V A RA + + G K++ +
Sbjct: 323 DRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMPRAHVNNDLRGAFKVVVN 382
Query: 803 MKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
++ EILG + G + E+I +A++ + + HP+++E
Sbjct: 383 TETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAE 430
|
Length = 438 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 210 bits (535), Expect = 1e-59
Identities = 134/468 (28%), Positives = 228/468 (48%), Gaps = 30/468 (6%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
K++D +VIG G GG ++ R A+ G K ++ K LGGTC NVGC+P K +
Sbjct: 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK-------LGGTCVNVGCVPKKVMWY 53
Query: 449 TSHSFENVKNSFFEYGINTQNV-TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
S E + ++ +YG T N ++ E+++ + + N +KNK+ GH
Sbjct: 54 ASDLAERMHDAA-DYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGH 112
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMI 567
A FT + TA +I+IATG K SFP L + G +
Sbjct: 113 ARFTKD--------GTVEVNGRDYTAPHILIATGGKP-SFPENIPGAELGTDSDGFFALE 163
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
+PK++ I+GAG I +E+ + LGSE ++ L + D I++ K+G+N
Sbjct: 164 ELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGIN 223
Query: 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
+ +K ++ E L+ + I D+L+ AIGR PNT L ++ +G+
Sbjct: 224 VHKLSKPVKVEKTVEGKLVIHFEDGK----SIDDV--DELIWAIGRKPNTKGLGLENVGI 277
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS--INFN 745
K+NE IIV++ TN+P IYA+GDVV L A G ++E + K +++N
Sbjct: 278 KLNEKGQIIVDEYQNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYN 337
Query: 746 ALPFVIYTFPEIASVGKTE-QYLKKHNISYNVGIF--PFLANSRARILGETSGMVKILSD 802
+P V+++ P I ++G TE + ++K+ N+ ++ F A + +K++
Sbjct: 338 NVPTVVFSHPPIGTIGLTEKEAIEKYGKE-NIKVYNSSFTPMYYAMTSEKQKCRMKLVCA 396
Query: 803 MKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
K ++++G+H IG E++ +AI+ A+ D +HP+ SE
Sbjct: 397 GKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSE 444
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 2e-57
Identities = 127/489 (25%), Positives = 235/489 (48%), Gaps = 32/489 (6%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEE--NFALGGTCTNVGCIPSKALL 447
++D+IVIG G GG A+ A G K +D + +GGTC NVGCIP K +
Sbjct: 2 DYDLIVIGGGSGGLAAAKEAAAYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMH 61
Query: 448 QTSHSFENVKNSFFEYGINTQN-VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
Q + + +K+S YG + V + ++++E N I N G ++ K+K+ +
Sbjct: 62 QAALLGQALKDSR-NYGWKVEETVKHDWKRLVEAVQNHIGSLNWGYRVALREKKVKYENA 120
Query: 507 HAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
+A F K H I+ NK ++ +A+ +IATG + R +PG+ + L +++
Sbjct: 121 YAEFVDK-----HRIKATNKKGKEKIYSAERFLIATGERPR-YPGIPGAKELCITSDDLF 174
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+ P K ++GA + LE +G +VT++ + S L D++ A K + +
Sbjct: 175 SLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDCANKVGEHMEEH 233
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ ++ + VL+ +++ T I +D +L+AIGR T LN++
Sbjct: 234 GVKFKRQFVPIKVEQIEAKVLVEFTDS-----TNGIEEEYDTVLLAIGRDACTRKLNLEN 288
Query: 685 IGLKVNE-NNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHI-SGQKHS 741
+G+K+N+ I ++ +TN+P IYA+GD++ P L A + G ++A+ + G
Sbjct: 289 VGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDKPELTPVAIQAGRLLAQRLFKGSTVI 348
Query: 742 INFNALPFVIYTFPEIASVGKTEQ-YLKKHNISYNVGIF-----PFLANSRARILGETSG 795
++ +P ++T E + G +E+ ++K NV +F P +R
Sbjct: 349 CDYENVPTTVFTPLEYGACGLSEEKAVEKFGEE-NVEVFHSYFWPLEWTIPSRDNHNKC- 406
Query: 796 MVKILSDMKSDE-ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854
K++ + K +E ++G H++GP A E+ A+ + +D+ +HP +E
Sbjct: 407 YAKLVCNKKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVF-- 464
Query: 855 AAMSIENRS 863
+S+ RS
Sbjct: 465 TTLSVTKRS 473
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 |
| >gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 4e-56
Identities = 122/471 (25%), Positives = 237/471 (50%), Gaps = 23/471 (4%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
N + VIG+G A+++ + G + I E +GGTC N+GC+PSK +++
Sbjct: 6 NLHIAVIGSGGSAMAAALKATERGARVTLI-------ERGTIGGTCVNIGCVPSKIMIRA 58
Query: 450 SHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKK-NNSGILFLFKKNK-IKFFHGH 507
+H + S F+ G++ Q ++ +L ++ +++ S + ++N I +G
Sbjct: 59 AHIAHLRRESPFDDGLSAQAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGE 118
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMI 567
A F + + + + ++T+ I TG++ P E L++ ALE+
Sbjct: 119 ARF---VDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPPVPGLAETPYLTSTSALELD 175
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
++P++L +IGA V+ LE+ + RLGS VT+L S L+ D + + ++G+
Sbjct: 176 HIPERLLVIGASVVALELAQAFARLGSRVTVLA-RSRVLSQEDPAVGEAIEAAFRREGIE 234
Query: 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
++ T+ + ++Y+ + ++T T ++LL+A GR PNT NLN++ IG+
Sbjct: 235 VLKQTQASE---------VDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGV 285
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNAL 747
+ E I ++++ +T + IYA GD P + A G A +++G S++ +A+
Sbjct: 286 E-TERGAIRIDEHLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDLSAM 344
Query: 748 PFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDE 807
P VI+T P++A+VG +E + + RA + +T G +K++++ S
Sbjct: 345 PEVIFTDPQVATVGLSEAEAQAQGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGR 404
Query: 808 ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMS 858
+LG+ ++ A ELI AV+A+ R + +IA + ++ E +K A +
Sbjct: 405 LLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQT 455
|
Length = 468 |
| >gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 5e-54
Identities = 131/480 (27%), Positives = 226/480 (47%), Gaps = 50/480 (10%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHS 452
V VIG+G A+++ + G + I E +GGTC NVGC+PSK +++ +H
Sbjct: 101 VAVIGSGGAAMAAALKAVEQGARVTLI-------ERGTIGGTCVNVGCVPSKIMIRAAHI 153
Query: 453 FENVKNSFFEYGINTQNVTLNLQKMLER-----------KNNIIKKNNSGILFLFKKNKI 501
+ S F+ GI T++ ++L + K I N I L
Sbjct: 154 AHLRRESPFDGGIAATVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVL------ 207
Query: 502 KFFHGHAIFTGKIQNNFHE--IQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLI 557
HG A F + +++ + + + +IATG+ PG+K E
Sbjct: 208 ---HGEARF-----KDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLK--ETPY 257
Query: 558 LSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKA 617
++ AL +P++L +IG+ V+ LE+ + RLGS+VTIL S+ F D I +
Sbjct: 258 WTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFRE-DPAIGEAV 316
Query: 618 FHLLNKQGLNIILNTKIHDIK-INKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
+G+ ++ +T+ + ++ E VL T E+ DKLL+A GR PN
Sbjct: 317 TAAFRAEGIEVLEHTQASQVAHVDGEFVL-------TTGHGELRA---DKLLVATGRAPN 366
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHIS 736
T +L +D G+ VN I+++ T++P+IYA GD P + A G A +++
Sbjct: 367 TRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMT 426
Query: 737 GQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGM 796
G +++ A+P V++T P++A+VG +E I + RA +T G
Sbjct: 427 GGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGF 486
Query: 797 VKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
+K++ + S ++G+ + P A ELI A +AI R + +++A + ++ E +K AA
Sbjct: 487 IKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAA 546
|
Length = 561 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 4e-53
Identities = 125/478 (26%), Positives = 226/478 (47%), Gaps = 47/478 (9%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+D+I+IG G G + R A + A +++ GGTC NVGCIP+K + +
Sbjct: 2 YDLIIIGTGSGNSILDERFADK--RIAIVEKG-------TFGGTCLNVGCIPTKMFVYAA 52
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERK-NNIIKKNNSGILFLFKKN-KIKFFHGHA 508
++ + G++ + + ++ R I G + + I + GHA
Sbjct: 53 DVARTIREAA-RLGVDAELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHA 111
Query: 509 IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP-----GVKFDENLILSNKGA 563
F G ++ E ITA ++IA GS+ P GV++ ++
Sbjct: 112 RFIGP-----KTLRT--GDGEEITADQVVIAAGSRPVIPPVIADSGVRYH-----TSDTI 159
Query: 564 LEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK 623
+ + +P+ L I+G G I E ++ LG VT++ S L +D++I+++ F L
Sbjct: 160 MRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISER-FTELAS 218
Query: 624 QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNID 683
+ ++ L + + + V + + ST + + D LL+A GR+PN + L+
Sbjct: 219 KRWDVRLGRNVVGVSQDGSGVTLRLDDGST------VEA--DVLLVATGRVPNGDLLDAA 270
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAE---HISGQKH 740
G+ V+E+ ++V++ T+ ++A+GDV L H A E +V H
Sbjct: 271 AAGVDVDEDGRVVVDEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIA 330
Query: 741 SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPF--LANSRARILGETSGMVK 798
S + +P ++T P+IASVG TE + + V + + +A A + +T+G VK
Sbjct: 331 S-DHRFVPAAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWA--MEDTTGFVK 387
Query: 799 ILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICH-VHPSLSEAMKEA 855
+++D + +LG HIIGP AS LI + A+ F + ++AR + +HP+L E ++ A
Sbjct: 388 LIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENA 445
|
Length = 451 |
| >gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 5e-51
Identities = 124/481 (25%), Positives = 220/481 (45%), Gaps = 40/481 (8%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL-- 446
V +IG+G + A+I+ A+ G + I E +GG C NVGC+PSK L
Sbjct: 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTII------EGADVIGGCCVNVGCVPSKILIR 68
Query: 447 ------LQTSHSFENVKN--SFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKK 498
Q S+ F+ V+ + G+ ++++ K I N + L
Sbjct: 69 AAQLAHQQRSNPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLL--- 125
Query: 499 NKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVK-FDENLI 557
G+A F N +++ + + + A +IATGS + P + +
Sbjct: 126 ------KGYARFKDG---NTLVVRLHDGGERVLAADRCLIATGSTP-TIPPIPGLMDTPY 175
Query: 558 LSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKA 617
++ AL +P L +IG+ V+ EI + RLGS VTIL S+ L D + +
Sbjct: 176 WTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARST-LLFREDPLLGETL 234
Query: 618 FHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677
K+G+ ++ NT+ L+ + + + T +KLLI+ GR NT
Sbjct: 235 TACFEKEGIEVLNNTQA---------SLVEHDDNGFVLTTGHGELRAEKLLISTGRHANT 285
Query: 678 NNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737
++LN++ +G+ + + I+VN ET+ P+IYA GD P + A G +++G
Sbjct: 286 HDLNLEAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTG 345
Query: 738 QKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMV 797
+++ +A+P VI+T P++A+VG +E I + RA ET G +
Sbjct: 346 GNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVPRALANFETDGFI 405
Query: 798 KILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAM 857
K++++ + +++G I+ ELI A +AI R + E++A + ++ E +K A
Sbjct: 406 KLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQ 465
Query: 858 S 858
+
Sbjct: 466 T 466
|
Length = 479 |
| >gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 179 bits (455), Expect = 3e-50
Identities = 96/285 (33%), Positives = 154/285 (54%), Gaps = 15/285 (5%)
Query: 102 IVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLD-- 159
+ P A+ + ++IS + G+G+DG+I+ EDV + S+K+ +
Sbjct: 3 LATPIARALAKKLGIDISLLK-GSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQA 61
Query: 160 -------SISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRL 212
+ K + E+ P +R IA + S +N A + NEI+M + DLR
Sbjct: 62 AKTAAPAAAPPKLEGKREKVAP---IRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRK 118
Query: 213 KYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNN--IIYHKYYDIGIAISSS 270
KD K VKL F+ F KA++ ALK++PI A D ++Y ++GIA+ +
Sbjct: 119 SVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVDTE 178
Query: 271 RGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTP 330
GL+VP+++NA +SI +I K+I+ A++ K+ P+EM GG+FTI+N G GS+ P
Sbjct: 179 AGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVP 238
Query: 331 IINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDG 375
+IN P+ AI GV AI + IV+N +V + + ++ DHR IDG
Sbjct: 239 VINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDG 283
|
Length = 306 |
| >gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 4e-49
Identities = 126/415 (30%), Positives = 197/415 (47%), Gaps = 55/415 (13%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
E+ +P LS +++E + W KKEG+ V E L ++ETDK +E+ ++G + KI+ D
Sbjct: 114 EIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 173
Query: 65 GSI-VTSNQVIALI---DTDISKL-----------------SSKTEIKNKKDIKNLNT-- 101
G+ + +VIA+ + DI K S K ++ K ++
Sbjct: 174 GAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPE 233
Query: 102 ----------------IVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVL-SSIK 144
P A+K+ DNN+ +S I GTG DGRI+K D+ L S K
Sbjct: 234 PKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIK-GTGPDGRIVKADIEDYLASGGK 292
Query: 145 NINEEKQEKYK-PYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEIN 203
K P LD I P +++R A RLLQS+ +
Sbjct: 293 GATAPPSTDSKAPALDYTDI----------PNTQIRKVTASRLLQSKQTIPHYYLTVDTR 342
Query: 204 MQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDI 263
+ ++ LR + E K+ +KA AL++ P N+S + I + +I
Sbjct: 343 VDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNI 402
Query: 264 GIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISN-GGV 322
+A+ + GL VP++++AD ++ I +++ + KA++N L PE+ GGTFT+SN GG
Sbjct: 403 NVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGP 462
Query: 323 FGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFA--LSYDHRIIDG 375
FG IINPPQSAIL V + +KRVI + ++ + LS DHR+IDG
Sbjct: 463 FGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDG 517
|
Length = 539 |
| >gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 5e-49
Identities = 102/398 (25%), Positives = 199/398 (50%), Gaps = 49/398 (12%)
Query: 13 ESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQ 72
E I+E LL W KEG+ V + L ++++DK +E+ + G + +I + G IV +
Sbjct: 8 EGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGE 67
Query: 73 V---IALIDTDISKLSSKTEIKNKKDIKNL-----------NTIVMPSAKKILSDNNLEI 118
I + D+ + S + +I +L + P+ + + +++
Sbjct: 68 TLLKIMVEDSQHLRSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDL 127
Query: 119 SKINNGTGKDGRIIKEDVLKVLSSIKNI------------NEEKQEKYKPYLDSISIKNN 166
+ I GTGKDGR++KEDVLK + + +E+
Sbjct: 128 NDIL-GTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTE-----Q 181
Query: 167 SRLEECVPMSRLRLCIAERLLQSQANSAILTTF---NEINMQSIIDLRLKYKDKFEKEHN 223
S ++ +P+ + + ++ +A + F EIN+ ++++L+ +++ +
Sbjct: 182 SYEDKTIPLRGFQRAMV----KTMTAAAKVPHFHYVEEINVDALVELKASFQEN-NTDPT 236
Query: 224 VKLGFMSFFVKAVVSALKQYPIINASVDG--NNIIYHKYYDIGIAISSSRGLVVPILRNA 281
VK F+ F +K++ AL +YP++N+ + + I ++IG+A+++ GLVVP ++N
Sbjct: 237 VKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNV 296
Query: 282 DTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILG 341
++S+ +I K+++ + A +NKL PE+++GGT T+SN G G +P++N P+ AI+
Sbjct: 297 QSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIA 356
Query: 342 VHAIKKRV-IVENNNVV---IRPINYFALSYDHRIIDG 375
+ I+K V++ NV I + A DHR++DG
Sbjct: 357 LGRIQKVPRFVDDGNVYPASIMTVTIGA---DHRVLDG 391
|
Length = 416 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 178 bits (454), Expect = 1e-48
Identities = 133/481 (27%), Positives = 238/481 (49%), Gaps = 47/481 (9%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+++D+I+IG G G + R A K I E GGTC NVGCIP+K +
Sbjct: 1 RHYDLIIIGTGSGNSIPDPRFAD---KRIAI------VEKGTFGGTCLNVGCIPTKMFVY 51
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLER--KNNIIKKNNSGILFLF--KKNKIKFF 504
+ +++ S GI+ + ++ ++ R + I G + + I +
Sbjct: 52 AAEVAQSIGESA-RLGIDAEIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVY 110
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP-----GVKFDENLILS 559
GHA F G ++ E IT I+IA GS+ P GV++ +
Sbjct: 111 DGHARFVGP-----RTLRT--GDGEEITGDQIVIAAGSRPYIPPAIADSGVRYH-----T 158
Query: 560 NKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFH 619
N+ + + +P+ L I+G G I E ++ LG+ VTI+ S+ L +DE+I+ + F
Sbjct: 159 NEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDR-FT 217
Query: 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679
+ K+ +I L + ++ + + V + + ST +T+ D LL+A GR+PN +
Sbjct: 218 EIAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGST------VTA--DVLLVATGRVPNGDL 269
Query: 680 LNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739
L+ + G++V+E+ I V++ T+ ++A+GDV L H A E +V ++
Sbjct: 270 LDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHPN 329
Query: 740 HSINFN--ALPFVIYTFPEIASVGKTEQYLKK--HNISYNVGIFPFLANSRARILGETSG 795
+P ++T P+IA+VG TEQ ++ H+I+ + + +A A + +T+G
Sbjct: 330 DLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWA--MEDTTG 387
Query: 796 MVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICH-VHPSLSEAMKE 854
K+++D + ++LG HIIGP AS LI + A+ F + ++AR + +HP+L E ++
Sbjct: 388 FCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVEN 447
Query: 855 A 855
A
Sbjct: 448 A 448
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 179 bits (454), Expect = 2e-48
Identities = 132/486 (27%), Positives = 230/486 (47%), Gaps = 40/486 (8%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWKDNEENF--ALGGTCTNVGCIPSK 444
+K FD++VIGAG GG A A L + A +D + F ALGGTC NVGC+P K
Sbjct: 1 SKAFDLVVIGAGSGGLEAGWNAATLYKKRVAVVDVQTHHGPPFYAALGGTCVNVGCVPKK 60
Query: 445 ALLQTSHSFENVKNSF-FEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNK-IK 502
++ + + ++ S F + + +V N + ++ KN + N +F + +
Sbjct: 61 LMVTGAQYMDTLRESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLT 120
Query: 503 FFHGHAIFTGKIQNNFHEIQI------INKTKETITAKYIIIATGSKARSFPGVKFDENL 556
FF G G +++ + + + + KE + A++I++ATGS + G+ E+
Sbjct: 121 FFLGW----GALEDK-NVVLVRESADPKSAVKERLQAEHILLATGSWPQ-MLGIPGIEHC 174
Query: 557 ILSNKGALEMINVPKKLCIIGAGVIGLEIGSI---WRRLGSEVTILEMSSNFLNTVDEEI 613
I SN+ A + P+++ +G G I +E I ++ G +VT+ ++ L D +
Sbjct: 175 ISSNE-AFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTL 233
Query: 614 AKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEI-ITSIFDKLLIAIG 672
K+ L G+NI+ N + +N ++ S +V E T D +++AIG
Sbjct: 234 RKELTKQLRANGINIMTNENPAKVTLN--------ADGSKHVTFESGKTLDVDVVMMAIG 285
Query: 673 RIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVA 732
R+P T L +DK+G+++ + I V++ TN+PNIYAIGDV ML A EG
Sbjct: 286 RVPRTQTLQLDKVGVELTKKGAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFV 345
Query: 733 EHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKK---HNISYNVGIFPFLANSRAR 788
+ + G K + + +++ P I + G E+ K Y P + N
Sbjct: 346 DTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKFEKVAVYESSFTPLMHN---- 401
Query: 789 ILGETSG--MVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHP 846
I G + KI+++ +LG+H++G + E+I I ++ A D VHP
Sbjct: 402 ISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHP 461
Query: 847 SLSEAM 852
+ +E +
Sbjct: 462 TSAEEL 467
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 4e-47
Identities = 122/474 (25%), Positives = 227/474 (47%), Gaps = 31/474 (6%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHS 452
+++IG GPGGY A++ AQLG I E LGG C+PSK L+ T+
Sbjct: 4 IVIIGGGPGGYEAALVAAQLGADVTVI-------ERDGLGGAAVLTDCVPSKTLIATA-- 54
Query: 453 FENVKNSFF---EYGINTQN---VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
V+ E GI + ++L + R + ++ I ++ ++ G
Sbjct: 55 --EVRTELRRAAELGIRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAG 112
Query: 507 HAIFTGKIQNNFHEIQII--NKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
H +++ + +ET+ A ++IATG+ R P + D IL+ +
Sbjct: 113 RGRLIDPGLGP-HRVKVTTADGGEETLDADVVLIATGASPRILPTAEPDGERILTWRQLY 171
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
++ +P+ L ++G+GV G E S + LG +VT++ L D + A+ + ++
Sbjct: 172 DLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARR 231
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ ++ ++ ++ + V++ ++ T + S L+A+G +PNT L +++
Sbjct: 232 GMTVLKRSRAESVERTGDGVVVTLTDGRT-----VEGS---HALMAVGSVPNTAGLGLEE 283
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEG-IMVAEHISGQKHS-I 742
G+++ + I V+ T++P IYA GD LA A +G I + H G+ S +
Sbjct: 284 AGVELTPSGHITVDRVSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMY-HALGEAVSPL 342
Query: 743 NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSD 802
+ ++T PEIA+VG ++ + + + P N RA++ G G VK+
Sbjct: 343 RLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRDGFVKLFCR 402
Query: 803 MKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
+ ++G ++ P ASELI +A++ R + +D+A+ V+PSLS ++ EAA
Sbjct: 403 PGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAA 456
|
Length = 466 |
| >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 9e-47
Identities = 138/488 (28%), Positives = 232/488 (47%), Gaps = 47/488 (9%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEE--NFALGGTCTNVGCIPSKALLQ 448
+D++VIG G GG A+ A G K A D K + + + LGGTC NVGC+P K +
Sbjct: 6 YDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHY 65
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
++ + YG T + + N K++ N I+ N + +K+++ +G A
Sbjct: 66 AANIGSIFHHDSQMYGWKTSS-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLA 124
Query: 509 IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK---ARSFPGVKFDENLILSNKGALE 565
+ ++ + N +ETITAKYI+IATG + PG K +++
Sbjct: 125 KLKDEHTVSYGD----NSQEETITAKYILIATGGRPSIPEDVPGAK---EYSITSDDIFS 177
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
+ P K I+GA IGLE LG +VT+ + S L D + ++K + +QG
Sbjct: 178 LSKDPGKTLIVGASYIGLETAGFLNELGFDVTV-AVRSIPLRGFDRQCSEKVVEYMKEQG 236
Query: 626 LNIILNTKIHDIKINK--ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNID 683
+ + I I K + + + +S+ +T +FD +L A GR P+ LN++
Sbjct: 237 --TLFLEGVVPINIEKMDDKIKVLFSDGTT--------ELFDTVLYATGRKPDIKGLNLN 286
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISGQ-KHS 741
IG+ VN++N II ++C TNIPNI+A+GDVV G P L A + GI++A + Q
Sbjct: 287 AIGVHVNKSNKIIAPNDC-TNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEF 345
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS------------RARI 789
I++ +P I+T E + G + + ++ + N+ RAR
Sbjct: 346 IDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARK 405
Query: 790 ----LGETSGMVKILSDMKS--DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICH 843
+S + L +KS ++++G H +GP A E+ +A++ A D +
Sbjct: 406 DEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMIG 465
Query: 844 VHPSLSEA 851
+HP+ +E
Sbjct: 466 IHPTDAEV 473
|
Length = 499 |
| >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 1e-46
Identities = 135/475 (28%), Positives = 226/475 (47%), Gaps = 47/475 (9%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
MNK + ++IG G G ++ LA+ G++ A I++ N GGTC N+GCIP+K L
Sbjct: 1 MNK-YQAVIIGFGKAGKTLAVTLAKAGWRVALIEQ-----SNAMYGGTCINIGCIPTKTL 54
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKN--NIIKKNNSGILFLFKKNKIKFF 504
+ + +++ F I +N +N L KN N+ N I
Sbjct: 55 VHDAQ-----QHTDFVRAIQRKNEVVNF---LRNKNFHNLADMPN-----------IDVI 95
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKE-TITAKYIIIATGSKA--RSFPGVKFDENLILSNK 561
G A F N H +++ I + I I TG++ PG+ + +
Sbjct: 96 DGQAEFI-----NNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDST 149
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
G L + +P L I+G G IG+E S++ GS+VTILE +S FL D +IA +L
Sbjct: 150 GLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATIL 209
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
QG++IILN + I + EN V +E D LLIA GR P T +L+
Sbjct: 210 RDQGVDIILNAHVERIS-HHEN--------QVQVHSEHAQLAVDALLIASGRQPATASLH 260
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI--SGQK 739
+ G+ VNE I+V+ T NI+A+GDV G + + ++ +V + + G++
Sbjct: 261 PENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKR 320
Query: 740 HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKI 799
+ + +P+ ++ P ++ VG TE+ ++ V P A RAR++ +T G++K
Sbjct: 321 STDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKA 380
Query: 800 LSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854
+ D K+ ILG ++ + E+I + ++ + HPS+SE++ +
Sbjct: 381 IVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLND 435
|
Length = 441 |
| >gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 2e-46
Identities = 98/292 (33%), Positives = 157/292 (53%), Gaps = 6/292 (2%)
Query: 87 KTEIKNKKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNI 146
K +++ KD + + P AK+I ++N+ +I GTG G+I+K+DVL +L
Sbjct: 37 KEDVETYKDTNVVR--ISPLAKRIALEHNIAWQEIQ-GTGHRGKIMKKDVLALLPENIEN 93
Query: 147 NEEKQEKYKPYLDSISIKNNSRLE-ECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQ 205
+ K ++ + E E +PM+ +R IA+R+++S + T E++M
Sbjct: 94 DSIKSPAQIEKVEEVPDNVTPYGEIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMT 153
Query: 206 SIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASV--DGNNIIYHKYYDI 263
++ LR K + + K AVV L ++P INAS+ DG II H Y ++
Sbjct: 154 EMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTIITHNYVNL 213
Query: 264 GIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVF 323
+A+ GL+ P++ NA+ MS++++ + I + D KL P E+ TFTISN G+F
Sbjct: 214 AMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMF 273
Query: 324 GSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDG 375
G PIIN P SAILGV + ++ +V N +VIRPI L+ DHR++DG
Sbjct: 274 GVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDG 325
|
Length = 347 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 4e-46
Identities = 134/475 (28%), Positives = 233/475 (49%), Gaps = 36/475 (7%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK----DNEENFALGGTCTNVGCIPSKA 445
+FD+ VIGAG GG A+ A G K I E +E +GGTC GC+P K
Sbjct: 25 DFDLFVIGAGSGGVRAARFSANFGAKVG-ICELPFHPISSESIGGVGGTCVIRGCVPKKI 83
Query: 446 LLQTSH---SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK 502
L+ + FE+ KN + + IN + V N +K+L++K + I + N L +K
Sbjct: 84 LVYGATFGGEFEDAKN--YGWEIN-EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVK 140
Query: 503 FFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLILSN 560
+ G G N E+ ++ TK TAK+I+IATGS+A+ + PG + L +++
Sbjct: 141 LYEGEGKIVGP---NEVEVTQLDGTKLRYTAKHILIATGSRAQRPNIPG----KELAITS 193
Query: 561 KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHL 620
AL + +PK+ ++G G I +E SIWR +G+ V + L D+E+
Sbjct: 194 DEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARN 253
Query: 621 LNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL 680
L +G+N+ T + + + + + T+ E + D +L A GR PNT L
Sbjct: 254 LEGRGINLHPRTNLTQLTKTEGGIKV-----ITDHGEEFVA---DVVLFATGRAPNTKRL 305
Query: 681 NIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQK 739
N++ +G+++++ + V++ TNIP+I+AIGDV L A EG A+ + GQ
Sbjct: 306 NLEAVGVELDKAGAVKVDEYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQP 365
Query: 740 HSINFNALPFVIYTFPEIASVGKTE-QYLKKHN---ISYNVGIFPFLANSRARILGETSG 795
++ + ++ P ++ VG +E + +++ + + P R E +
Sbjct: 366 TKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQ--EKTV 423
Query: 796 MVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
M K++ D ++D++LG + GP A E++ +A++ A+ +HPS +E
Sbjct: 424 M-KLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAE 477
|
Length = 499 |
| >gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 4e-46
Identities = 113/416 (27%), Positives = 196/416 (47%), Gaps = 44/416 (10%)
Query: 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62
+ EV +P + I + T++ K G+ V +++LI +E+DK +E+PAP G++ + +
Sbjct: 116 VQEVTVPDIG-DIEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKV 174
Query: 63 TDGSIVTSNQVIALIDTDIS------------------------------KLSSKTEIKN 92
G V + +I + S ++
Sbjct: 175 KVGDSVPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQ 234
Query: 93 KKDIKNLNTI--VMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK-VLSSIKNINEE 149
+ +N + P+ +++ + +++S + GTG GRI++EDV + V
Sbjct: 235 QAGTQNPAKVDHAAPAVRRLAREFGVDLSAVK-GTGIKGRILREDVQRFVKEPSVRAQAA 293
Query: 150 KQEKYKPYLDSISIKNNS-----RLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINM 204
++ N +EE V MSR+R L ++ +T F++ ++
Sbjct: 294 AASAAGGAPGALPWPNVDFSKFGEVEE-VDMSRIRKISGANLTRNWTMIPHVTHFDKADI 352
Query: 205 QSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVD--GNNIIYHKYYD 262
+ R + EKE VKL + +KAV +ALK++P NAS+D G +I KY +
Sbjct: 353 TEMEAFRKQQNAAVEKE-GVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVN 411
Query: 263 IGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGV 322
IG+A+ + GL+VP++++ D I ++ ++++ KA+D KL P+EM G FTIS+ G
Sbjct: 412 IGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGG 471
Query: 323 FGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
G TPI+N P+ AILGV + R + +LSYDHR+IDG +A
Sbjct: 472 IGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPLSLSYDHRVIDGADA 527
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (418), Expect = 4e-43
Identities = 136/533 (25%), Positives = 231/533 (43%), Gaps = 97/533 (18%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447
+D+IVIG G GG A+ R A+ K A + E LGGTC NVGC+P K +
Sbjct: 46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALV-------EKDYLGGTCVNVGCVPKKIMF 98
Query: 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
+ + ++NS YG +TQ NL ++ER++ I++ N KK+ +++F G
Sbjct: 99 NAASIHDILENSR-HYGFDTQFS-FNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGK 156
Query: 508 AIFTG-------KIQNNFHEIQIINKTKET--------------ITAKYIIIATGSKARS 546
K+ E + + T I K I+IA G+K
Sbjct: 157 GSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKP-I 215
Query: 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606
FP VK E I S+ I K++ I G+G I +E+ ++ RLG+E I + L
Sbjct: 216 FPDVKGKEFTISSD--DFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273
Query: 607 NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666
DE I + + + K +NII + + +I+ KE L Y + + FD
Sbjct: 274 RKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEH------FDY 327
Query: 667 LLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV---------RG 717
++ +GR PNT +LN+ + +K +I V+DN T++ +IYA+GD
Sbjct: 328 VIYCVGRSPNTEDLNLKALNIK-TPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDL 386
Query: 718 PMLAHKAEEEGIMVAEHISGQ--------------------------KHSINFNALPFVI 751
+L EE + E+ SG+ + N+ +P VI
Sbjct: 387 NLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGPFSRTTNYKLIPSVI 446
Query: 752 YTFPEIASVGKTEQ-----YLKKH---------NISYNVGIFPFLANSRARILGETSGMV 797
++ P I ++G +EQ Y K++ N+ + ++ + + +
Sbjct: 447 FSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFF--SVYDMDPAQKEKTY------L 498
Query: 798 KILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
K++ K + I G+HI+G A E++ +A++ A+ D +HP+ +E
Sbjct: 499 KLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAE 551
|
Length = 561 |
| >gnl|CDD|217252 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 8e-41
Identities = 59/109 (54%), Positives = 74/109 (67%)
Query: 748 PFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDE 807
P V++T PEIASVG TE+ KK VG FPF AN RA GET G VK+++D ++
Sbjct: 2 PSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETGR 61
Query: 808 ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
ILG HI+GP A ELI EA +AI+ A+ ED+A H HP+LSEA+ EAA
Sbjct: 62 ILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEALVEAA 110
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110 |
| >gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase | Back alignment and domain information |
|---|
Score = 148 bits (374), Expect = 2e-37
Identities = 135/504 (26%), Positives = 233/504 (46%), Gaps = 70/504 (13%)
Query: 390 NFDVIVIGAGPGG---------YVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGC 440
+FD+ IGAG GG + AS + +L F T D +GGTC GC
Sbjct: 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLG------GVGGTCVLRGC 132
Query: 441 IPSKALL---QTSHSFENVKNSFFEYGINTQ--------NVTLNLQKMLERKNNIIKKNN 489
+P K L+ + SH FE + ++Y + N LQ++ NI+ N
Sbjct: 133 VPKKLLVYASKYSHEFEESRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNIL--KN 190
Query: 490 SGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549
+G+ + + KI + H + + K TA+ I+IA G + P
Sbjct: 191 AGVTLIEGRGKIV--------------DPHTVDVDGKL---YTARNILIAVGGRP-FIPD 232
Query: 550 VKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV 609
+ E+ I S+ AL++ + P+K+ I+G G I LE I+ L S+V + L
Sbjct: 233 IPGIEHAIDSD-AALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGF 291
Query: 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIIT-SIFDKLL 668
DEE+ ++ +G I +T+ I K + S ++KT T F ++
Sbjct: 292 DEEVRDFVAEQMSLRG--IEFHTEESPQAIIKSA------DGSLSLKTNKGTVEGFSHVM 343
Query: 669 IAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEG 728
A GR PNT NL ++++G+K+++N I V++ T++P+I+A+GDV L A EG
Sbjct: 344 FATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTSVPSIWAVGDVTDRINLTPVALMEG 403
Query: 729 IMVAEHISGQKHS-INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRA 787
+A+ + G + + ++ A+P +++ P I VG TE+ + +V F AN R
Sbjct: 404 GALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDV----FTANFRP 459
Query: 788 RILGETSGM-----VKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARIC 842
+ SG+ +K++ K++++LG+H+ G A E+I +A++ + D
Sbjct: 460 -LKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATV 518
Query: 843 HVHPSLSE---AMKEAAMSIENRS 863
+HP+ +E M+ I S
Sbjct: 519 GIHPTAAEEFVTMRTPTRKIRKDS 542
|
Length = 558 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 8e-25
Identities = 90/336 (26%), Positives = 142/336 (42%), Gaps = 58/336 (17%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDENLILSNKGA 563
HE+ +N ++T+ + Y+I++ G+ + G+ D L N
Sbjct: 65 HEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLED 124
Query: 564 LEMI------NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKK 616
+ I N + + IIG G IG+E+ R G VT++ S LN DEE+ +
Sbjct: 125 TDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQI 184
Query: 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
L K +N+ LN ++ I E + +++ D +++A G PN
Sbjct: 185 VEEELKKHEINLRLNEEV--DSIEGEERVKVFTSGGVYQ--------ADMVILATGIKPN 234
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDV-------VRGPM---LAHKAEE 726
+ GLK+ E I VN+ +T++PNIYA GDV + P LA A +
Sbjct: 235 SEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANK 292
Query: 727 EGIMVAEHISGQKHSINF------NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFP 780
G + E+I+G + I F N F T IAS G TE KK NI Y
Sbjct: 293 MGRIAGENIAG--NDIEFKGVLGTNITKFFDLT---IASTGVTENEAKKLNIDYKTVFVK 347
Query: 781 FLANSRARIL-GETSGMVKILSDMKSDEILGIHIIG 815
A + A G + +K++ + + ILG +G
Sbjct: 348 --AKTHANYYPGNSPLHLKLIYEKDTRRILGAQAVG 381
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
|---|
Score = 95.5 bits (239), Expect = 6e-24
Identities = 31/74 (41%), Positives = 49/74 (66%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
E+K+P L ES++E T++ W KEG+ V + L ++ETDK +E+ AP G++ KI++
Sbjct: 1 TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60
Query: 64 DGSIVTSNQVIALI 77
+G V QVIA+I
Sbjct: 61 EGDTVPVGQVIAVI 74
|
2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 2e-22
Identities = 80/332 (24%), Positives = 128/332 (38%), Gaps = 61/332 (18%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+DVI+IG GP G A+I A+ G K I E GG L +
Sbjct: 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLIL------EGGEPGG------------QLTKT 45
Query: 451 HSFENVKNSFFEYGINTQNVTLNL-QKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAI 509
EN G + L ++M E F ++
Sbjct: 46 TDVENYP------GFPGGILGPELMEQMKE------------QAEKFG---VEIVEDEVE 84
Query: 510 FTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR--SFPGVKFDENLILSNKGALEMI 567
F + K T AK +IIATG+ AR PG + E +S +
Sbjct: 85 KVELEGGPF----KVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGF 140
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
K + +IG G +E ++ +VT++ F +E + ++ +
Sbjct: 141 FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEF--RAEEILVERLK---KNVKIE 195
Query: 628 IILNTKIHDIKINK-ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
++ NT + +I + E V++ NVK E D + IAIG +PNT + K
Sbjct: 196 VLTNTVVKEILGDDVEGVVLK------NVKGEEKELPVDGVFIAIGHLPNTE---LLKGL 246
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGP 718
++EN +I+V++ ET++P I+A GDV
Sbjct: 247 GVLDENGYIVVDEEMETSVPGIFAAGDVADKN 278
|
Length = 305 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.7 bits (243), Expect = 2e-21
Identities = 69/290 (23%), Positives = 114/290 (39%), Gaps = 35/290 (12%)
Query: 495 LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDE 554
+ I G + + +N + I Y+++ATG++ R P E
Sbjct: 62 FNRATGIDVRTGTEVTSIDPENKVVLLD-----DGEIEYDYLVLATGARPRPPPIS-DWE 115
Query: 555 NLI-LSNKGALEMIN----VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV 609
++ L + E + PK + ++GAG IGLE + G +VT++E + +
Sbjct: 116 GVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175
Query: 610 -DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDKL 667
D E+A++ LL K G+ ++L TK+ ++ + V I D +
Sbjct: 176 LDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTL------VVERVVGIDGEEIKADLV 229
Query: 668 LIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCET-NIPNIYAIGDVVRGPM------- 719
+I G PN L D + ++V++ T P++YA GDV P
Sbjct: 230 IIGPGERPNV-VLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGG 288
Query: 720 ---LAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFP--EIASVGKTE 764
L A G + AE+I+G L VI AS G TE
Sbjct: 289 RIALWAIAVAAGRIAAENIAGALR--IPGLLGTVISDVGDLCAASTGLTE 336
|
Length = 415 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-20
Identities = 85/352 (24%), Positives = 139/352 (39%), Gaps = 71/352 (20%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DVI+IGAGP G A+I A+ K I E GG L T+
Sbjct: 1 DVIIIGAGPAGLTAAIYAARANLKPLLI-------EGGEPGG------------QLTTTT 41
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFT 511
EN F GI+ + +++ + F + + I
Sbjct: 42 EVENYPG--FPEGISGPELMEKMKEQAVK---------------FG---AEIIYEEVIKV 81
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKG--ALEMINV 569
K F + + TAK +IIATG+ AR G+ ++ +G +
Sbjct: 82 DKSGRPFK---VYTGDGKEYTAKAVIIATGASARKL-GIPGEDEFW--GRGVSYCATCDG 135
Query: 570 P----KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF--HLLNK 623
P K++ ++G G +E R+ +VT++ F A+K L
Sbjct: 136 PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR-------AEKILLDRLKKN 188
Query: 624 QGLNIILNTKIHDIKINK--ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
+ + N+ + +I + E V I N T + E+ D + IAIG PNT L
Sbjct: 189 PKIEFLWNSTVKEIVGDNKVEGVKI--KNTVTGEEEELEV---DGVFIAIGHEPNTELL- 242
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-RGPMLAHKAEEEGIMVA 732
K L+++EN +I+ ++ T++P ++A GDV +G A A +G + A
Sbjct: 243 --KGLLELDENGYIVTDEGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAA 292
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 7e-20
Identities = 82/286 (28%), Positives = 123/286 (43%), Gaps = 54/286 (18%)
Query: 518 FHEIQIIN-----------KTKETITAKY--IIIATGSKARSFPGVKFDENLILSNKGAL 564
+HE+ IN KT E Y +I++ G+ A S G + D L N
Sbjct: 78 YHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGFESDITFTLRNLEDT 136
Query: 565 EMI------NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF 618
+ I N K ++GAG I LE+ G T++ S +D ++ +
Sbjct: 137 DAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPIL 196
Query: 619 HLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678
L+K+ + LN +I I N + + KS V+ +D ++ +G PN+
Sbjct: 197 DELDKREIPYRLNEEIDAINGN----EVTF--KSGKVEH------YDMIIEGVGTHPNSK 244
Query: 679 NLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPM----------LAHKAEEEG 728
I+ +K+++ FI VND ETN+PNIYAIGD++ LA A
Sbjct: 245 F--IESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAA 302
Query: 729 IMVAEHISGQKHSINF------NALPFVIYTFPEIASVGKTEQYLK 768
+VAE I+G +I F N + F YTF ASVG LK
Sbjct: 303 SIVAEQIAG-NDTIEFKGFLGNNIVKFFDYTF---ASVGVKPNELK 344
|
Length = 438 |
| >gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-18
Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 21/161 (13%)
Query: 235 AVVSALKQYPIINAS---VDGN-NIIYHKYYDIGIAI-----SSSRGLVVPILRNADTMS 285
A+V ALK +P +N VDG ++ + ++G+AI SR LVVP ++ A+TM
Sbjct: 179 ALVQALKAFPNMNRHYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMD 238
Query: 286 IADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAI 345
A + + +A+D KL ++ G T +++N G G++ S P + Q AI+GV A+
Sbjct: 239 FAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAM 298
Query: 346 K---------KRVIVENNNVVIRPINYFALSYDHRIIDGRE 377
+ + + E I + +YDHRII G E
Sbjct: 299 EYPAEFQGASEERLAELG---ISKVMTLTSTYDHRIIQGAE 336
|
Length = 1228 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-18
Identities = 95/349 (27%), Positives = 149/349 (42%), Gaps = 49/349 (14%)
Query: 496 FKKNKIKFFHGHAIFTGKIQNNFHEIQIIN-KTKETITAKY--IIIATGSKA--RSFPGV 550
F K+ I H + +N I + N KT Y ++IATG++ +
Sbjct: 66 FIKSGIDVKTEHEVVKVDAKNK--TITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNI 123
Query: 551 K---------FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEM 601
++ L L E I K + IIGAG IGLE + LG V I+++
Sbjct: 124 NLENVYTLKSMEDGLALKELLKDEEI---KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQL 180
Query: 602 SSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEII 660
L + D+EI L + G+ + LN + + I ++ V ++K + +++
Sbjct: 181 EDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSL-IGEDKVEGVVTDKG-EYEADVV 238
Query: 661 TSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGD------- 713
++A G PNT L GLK +N IIV++ ET+I NIYA GD
Sbjct: 239 -------IVATGVKPNTEFLEDT--GLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNI 289
Query: 714 VVRGPM---LAHKAEEEGIMVAEHISGQ----KHSINFNALPFVIYTFPEIASVGKTEQY 766
V + LA A + G MV E+++G+ K ++ + + E A G TE+
Sbjct: 290 VSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDL---EAARTGLTEEE 346
Query: 767 LKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIG 815
KK I Y +F N G+ VK++ + + ILG IIG
Sbjct: 347 AKKLGIDYKT-VFIKDKNHTNYYPGQEDLYVKLIYEADTKVILGGQIIG 394
|
Length = 444 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 3e-16
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
++ ++G G IGLE S +LGS+VT++E L DEEIAK L K G+ ++LN
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60
Query: 632 TKIHDIKINKENVLINYSNKS 652
T + +I+ N + V++
Sbjct: 61 TTVEEIEGNGDGVVVKLKTGD 81
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-13
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
E+K P + ES+ E T W K G+ V + L ++E K+ +E+PAP G++ +I++
Sbjct: 1 TEIKSPMIGESVKEGTA-EWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59
Query: 64 DGSIVTSNQVIALI 77
+G V +A I
Sbjct: 60 EGDTVEVGDPLAKI 73
|
This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73 |
| >gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 5e-13
Identities = 79/347 (22%), Positives = 145/347 (41%), Gaps = 88/347 (25%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+DV+V+G GP G A+I A+ G +TA + E +GG ++ +
Sbjct: 213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--------RIGGQ------------VKDT 252
Query: 451 HSFENVKNSFFEYGINTQNVT-----LNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
EN+ I+ T NL++ + ++ I N + ++ +
Sbjct: 253 VGIENL--------ISVPYTTGSQLAANLEEHI-KQYPIDLMENQRAKKIETEDGL---- 299
Query: 506 GHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF--PGVKFDENLILSNKGA 563
I + ++ E + AK +I+ATG++ R PG K E + KG
Sbjct: 300 ---------------IVVTLESGEVLKAKSVIVATGARWRKLGVPGEK--EYI---GKG- 338
Query: 564 LEMINVP---------KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV--DEE 612
+ P K + +IG G G+E + VT+LE F + + D+
Sbjct: 339 --VAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLE----FADELKADKV 392
Query: 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAI 671
+ K L N ++I+ + + +I + + V I Y ++++ E D + + I
Sbjct: 393 LQDKLKSLPN---VDILTSAQTTEIVGDGDKVTGIRYQDRNSG---EEKQLDLDGVFVQI 446
Query: 672 GRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGP 718
G +PNT L K +++N I++++ T++P I+A GDV P
Sbjct: 447 GLVPNTEWL---KDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVP 490
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 3e-12
Identities = 66/263 (25%), Positives = 114/263 (43%), Gaps = 39/263 (14%)
Query: 496 FKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF----PGVK 551
+++N I + G + IQ + + T++ +IIATGS F PG
Sbjct: 69 YEENGITLYTGEKV----IQIDRANKVVTTDAGRTVSYDKLIIATGSYP--FILPIPGSD 122
Query: 552 FDENLILSN-KGALEMIN---VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607
+ M++ KK +IG G++GLE + LG EVT++ ++ +
Sbjct: 123 LPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLM- 181
Query: 608 TVDEEIAKKAFHLL----NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663
+ ++ + A LL G+ ++L K I +K V+ T I
Sbjct: 182 --ERQLDRTAGRLLRRKLEDLGIKVLLE---------KNTEEIVGEDKVEGVRFADGTEI 230
Query: 664 F-DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV--RG--P 718
D +++A+G PN + GL VN I+VND +T+ P+IYA+G+ RG
Sbjct: 231 PADLVVMAVGIRPNDEL--AKEAGLAVNRG--IVVNDYMQTSDPDIYAVGECAEHRGKVY 286
Query: 719 MLAHKAEEEGIMVAEHISGQKHS 741
L E+ ++A+H+ G +
Sbjct: 287 GLVAPLYEQAKVLADHLCGGEAE 309
|
Length = 793 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 8e-12
Identities = 84/417 (20%), Positives = 147/417 (35%), Gaps = 126/417 (30%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP----SKALLQ 448
V VIGAGP G A+ LA+ G + E ++N GG N+ IP L+Q
Sbjct: 542 VAVIGAGPAGLAAAYFLARAGHP-VTVFEREEN-----AGGVVKNI--IPQFRIPAELIQ 593
Query: 449 TSHSFENVKNS--FFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
H E VK FE+G + L +++ L +
Sbjct: 594 --HDIEFVKAHGVKFEFGCS---PDLTVEQ------------------LKNEG------- 623
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLIL-------S 559
Y+++A G+ ++ ++
Sbjct: 624 --------------------------YDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEE 657
Query: 560 NKGALEMINVPKKLCIIGAG------------VIGLEIGSI-WRRLGSEVTILEMSSNFL 606
K + + K + ++G G V G+E ++ +RR T EM +
Sbjct: 658 YKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR-----TKQEMPA--- 709
Query: 607 NTVDEEIAKKAFH-------LLNKQGLNIILNTKIHDIKINKENVLINY--SNKSTNVKT 657
E ++A LLN + + + + + L S + V+T
Sbjct: 710 ---WREEYEEALEDGVEFKELLNPESFD--ADGTL----TCRVMKLGEPDESGRRRPVET 760
Query: 658 -EIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVR 716
E +T D ++ AIG +T L G+ +++ + +V+ N ET++ N+Y IGDV R
Sbjct: 761 GETVTLEADTVITAIGEQVDTELL--KANGIPLDKKGWPVVDANGETSLTNVYMIGDVQR 818
Query: 717 GPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNIS 773
GP A + A+ I ++ + + +V E Y +K +S
Sbjct: 819 GPSTIVAAIADARRAADAILSREGIRS----HQNDKYWN---NVEPAEIYQRKGILS 868
|
Length = 1019 |
| >gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 1e-11
Identities = 27/80 (33%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
MA IE K+P + E + E ++ W KEG+ V ++ L+ +ETDK +E+P+P G++ +I
Sbjct: 1 MA-IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEI 58
Query: 61 IITDGSIVTSNQVIALIDTD 80
+ G V+ ++A+I+
Sbjct: 59 KVKVGDTVSVGGLLAVIEAA 78
|
Length = 547 |
| >gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 2e-11
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
MA IE+ +P LS ++ E TL W KKEG+ V + + +IETDK +E+ A +G + KI
Sbjct: 1 MA-IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKI 59
Query: 61 IITDGSI-VTSNQVIALIDTD 80
++ +G+ V N IA++ +
Sbjct: 60 LVPEGTEGVKVNTPIAVLLEE 80
|
Length = 464 |
| >gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-11
Identities = 20/73 (27%), Positives = 42/73 (57%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
+ +PK S++E + W +EG+ V + + L+D+ETDK+ E+ AP G + + + +
Sbjct: 4 PITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQE 63
Query: 65 GSIVTSNQVIALI 77
G + ++A++
Sbjct: 64 GETLPVGALLAVV 76
|
Length = 371 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 8e-11
Identities = 45/194 (23%), Positives = 95/194 (48%), Gaps = 23/194 (11%)
Query: 537 IIATGSKARSF-PGVKFDENLILSN-----KGALEMINVPKKLCIIGAGVIGLEIGSIWR 590
++ATG+ A F P + E ++ N + A + +++ ++G G+IG E+
Sbjct: 104 VLATGASA--FVPPIPGRELMLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLC 161
Query: 591 RLGSEVTILEMSSNFL-NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYS 649
R G VT+++ +++ L + + E++ + H L + G++++L +++ ++ +
Sbjct: 162 RAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIRATLD 221
Query: 650 NKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIY 709
+ + D ++ A G PNT + GL VN I+V+ +T+ P+IY
Sbjct: 222 SGRS--------IEVDAVIAAAGLRPNTALAR--RAGLAVNRG--IVVDSYLQTSAPDIY 269
Query: 710 AIGDV--VRGPMLA 721
A+GD + G +L
Sbjct: 270 ALGDCAEINGQVLP 283
|
Length = 377 |
| >gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-10
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64
+ IP L++ + + T++ W KK G+ V + + L +IE K ++ AP+ G + K+++ +
Sbjct: 1 TILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKE 60
Query: 65 GSIVTSNQ 72
G+ V +
Sbjct: 61 GTKVEGDT 68
|
These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 47/190 (24%), Positives = 86/190 (45%), Gaps = 28/190 (14%)
Query: 536 IIIATGSKARSFPGV-KFDENLI----LSNKGAL-EMINVPKKLCIIGAGVIGLEIGSIW 589
+ IATG+ AR P + E + L E++ + + I+GAG IGLE+ +
Sbjct: 104 LFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASA 163
Query: 590 RRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK---QGLNIILNTKIHDIKINKENVLI 646
+ +VT++E+++ + ++ +LL + G+ I+LN I + ++ L
Sbjct: 164 TQRRCKVTVIELAATVMGRNAPPPVQR--YLLQRHQQAGVRILLNNAIEHVVDGEKVELT 221
Query: 647 NYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN--ENNFIIVNDNCETN 704
S + T D ++ IG N D++ + N N I++++ C T
Sbjct: 222 LQSGE---------TLQADVVIYGIGISAN------DQLAREANLDTANGIVIDEACRTC 266
Query: 705 IPNIYAIGDV 714
P I+A GDV
Sbjct: 267 DPAIFAGGDV 276
|
Length = 396 |
| >gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 3e-10
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
VK+P L ES++E T+ +W K G+ V +E L+++ TDKV E+P+P G++ +I
Sbjct: 3 ESVKMPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAP 62
Query: 64 DGSIVTSNQVIALI 77
+ V V+A+I
Sbjct: 63 EDDTVEVGGVLAII 76
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-10
Identities = 68/253 (26%), Positives = 120/253 (47%), Gaps = 39/253 (15%)
Query: 505 HGHAIFTGK--IQNNFHEIQIINKTKETITAKYIIIATGS-------KARSFPGVKF--- 552
HG ++TG+ IQ + + Q+I T++ +I+ATGS GV
Sbjct: 67 HGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRT 126
Query: 553 --DENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-NTV 609
D + I++ M KK +IG G++GLE + LG +V+++ + + +
Sbjct: 127 IEDLDAIMA------MAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQL 180
Query: 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDKLL 668
D+ + L ++GL +L K+ V I + K+ ++ + +S+ D ++
Sbjct: 181 DQTAGRLLQRELEQKGLTFLLE---------KDTVEIVGATKADRIRFKDGSSLEADLIV 231
Query: 669 IAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV----RGPMLAHKA 724
+A G PN L + G+KVN IIVND+ +T+ P+IYA+G+ R L
Sbjct: 232 MAAGIRPNDE-LAVSA-GIKVNRG--IIVNDSMQTSDPDIYAVGECAEHNGRVYGLVAPL 287
Query: 725 EEEGIMVAEHISG 737
E+ ++A+HI G
Sbjct: 288 YEQAKVLADHICG 300
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 4e-10
Identities = 87/359 (24%), Positives = 147/359 (40%), Gaps = 73/359 (20%)
Query: 373 IDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALG 432
ID A F +DV+V+G GP G A+I A+ G +T + E F G
Sbjct: 194 IDTGAAKRDAEEFNAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLV------AERF--G 245
Query: 433 GTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVT-LNLQKMLERKNNIIKKNNSG 491
G +L T EN I+ L LE +K+ +
Sbjct: 246 GQ-----------VLDTM-GIENF--------ISVPETEGPKLAAALEAH---VKQYDVD 282
Query: 492 ILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF--PG 549
++ L + +K++ ++ E+++ N + A+ +I+ATG++ R+ PG
Sbjct: 283 VMNLQRASKLE--------PAAVEGGLIEVELANGA--VLKARTVILATGARWRNMNVPG 332
Query: 550 VKFDENLILSNKGALEMINVP---------KKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
DE NKG + P K++ +IG G G+E + VT+LE
Sbjct: 333 E--DE---YRNKG---VAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 384
Query: 601 MSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEI 659
+ D + K L N + II N + ++K + + V + Y ++ + E
Sbjct: 385 FAPEL--KADAVLQDKLRSLPN---VTIITNAQTTEVKGDGDKVTGLEYRDRVSG---EE 436
Query: 660 ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGP 718
+ + + IG +PNT L K +++N IIV+ ETN+P ++A GD P
Sbjct: 437 HHLELEGVFVQIGLLPNTEWL---KGAVELNRRGEIIVDARGETNVPGVFAAGDCTTVP 492
|
Length = 520 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-09
Identities = 63/246 (25%), Positives = 109/246 (44%), Gaps = 50/246 (20%)
Query: 529 ETITAKY--IIIATGS-KARSF--PGVKFDENL------------ILSNK-GALEMINVP 570
E + KY ++IATG+ K+R PG E+L I + K G L VP
Sbjct: 113 EELVKKYDAVLIATGTWKSRKLGIPG----EDLPGVYSALEYLFRIRAAKLGYLPWEKVP 168
Query: 571 ----KKLCIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNFLNTVDEEIA-KKAFHLLNKQ 624
KK+ ++GAG+ ++ LG+E V + + T++E A K L +
Sbjct: 169 PVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLA-----YRRTINEAPAGKYEIERLIAR 223
Query: 625 G---------LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-----FDKLLIA 670
G + II ++ +++ K + + ++S + I D ++ A
Sbjct: 224 GVEFLELVTPVRIIGEGRVEGVELAK--MRLGEPDESGRPRPVPIPGSEFVLEADTVVFA 281
Query: 671 IGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIM 730
IG IP T + +G+++N I+V++ T+ ++A GDVV GP KA + G+
Sbjct: 282 IGEIP-TPPFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLR 340
Query: 731 VAEHIS 736
A+ I
Sbjct: 341 AAQSIH 346
|
Length = 352 |
| >gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 5e-09
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 101 TIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK 138
P+A+K+ ++ +++S++ GTG GRI KEDVL
Sbjct: 3 VFASPAARKLAAEKGIDLSQVK-GTGPGGRITKEDVLA 39
|
This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 7e-09
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 36/209 (17%)
Query: 574 CIIGAGVIGLEIGS--------IWRRLGSE------VTILEMSSNFLNTVDEEIAKKAFH 619
++G G G+E + R L E VT+LE S L + D+ + K
Sbjct: 177 VVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQR 236
Query: 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679
L + G++I T + ++ +KE VL + T + ++ S +G P T
Sbjct: 237 RLRRLGVDIRTKTAVKEVL-DKEVVLKDGEVIPTGL---VVWS------TGVGPGPLTKQ 286
Query: 680 LNIDKIGLKVNENNFIIVNDNCET-NIPNIYAIGDV-----VRGPMLAHKAEEEGIMVAE 733
L +DK I V+D+ IPN++A+GD P LA A ++G+ +A+
Sbjct: 287 LKVDK-----TSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAK 341
Query: 734 HISGQKHSINFNALPFVIYTFPEIASVGK 762
+ + + PFV + +A +G
Sbjct: 342 EFNNEL-KGKPMSKPFVYRSLGSLAYLGN 369
|
Length = 424 |
| >gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
MA IE+K+P + E + K G+ V ++LI +E DK +E+P+PQ G++ +I
Sbjct: 1 MA-IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEI 57
Query: 61 IITDGSIVTSNQVIALID 78
+ G V + +I + +
Sbjct: 58 KVKVGDKVETGALIMIFE 75
|
Length = 633 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 54/284 (19%), Positives = 99/284 (34%), Gaps = 53/284 (18%)
Query: 517 NFHEIQIINKTKETITAKYIIIATGSKARSF--PGVK-----FDE--------NLILSNK 561
+ ++ I+ Y+++A GS+ F PG +L
Sbjct: 84 DRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAF 143
Query: 562 GALEMINVPKKLC---IIGAGVIGLE-----------IGSIWRRLGSE--VTILEMSSNF 605
+ L I+G G G+E + +R SE V ++E
Sbjct: 144 EKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203
Query: 606 LNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665
L +++K A L K G+ ++L T + ++ + V + + D
Sbjct: 204 LPMFPPKLSKYAERALEKLGVEVLLGTPV--TEVTPDGV--TLKDGEEEIPA-------D 252
Query: 666 KLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE-TNIPNIYAIGDVVRG------P 718
++ A G + L D GL+ + ++VN + P+I+A GD P
Sbjct: 253 TVVWAAGVRASP--LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVP 310
Query: 719 MLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGK 762
A A ++G A++I + PF +AS+G
Sbjct: 311 PTAQAAHQQGEYAAKNI--KARLKGKPLKPFKYKDKGTLASLGD 352
|
Length = 405 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 9e-08
Identities = 58/268 (21%), Positives = 102/268 (38%), Gaps = 45/268 (16%)
Query: 497 KKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKY--IIIATGS---KARSFPGVK 551
KK + F + GK T E + ++Y + I TG+ K + PG +
Sbjct: 194 KKLGVTFRMNFLV--GK-----------TATLEELFSQYDAVFIGTGAGLPKLMNIPGEE 240
Query: 552 FDE-----------NLILSNKGALE--MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTI 598
NL+ + + + K + +IG G ++ RLG+EV
Sbjct: 241 LCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHC 300
Query: 599 LEMSSNFLNTVDEEIAKKA------FHLLNKQGLNIILNTK--IHDIKINKENVLINYSN 650
L + T E A FH L Q + II + + + +K K + +
Sbjct: 301 LYRRTREDMTARVEEIAHAEEEGVKFHFLC-QPVEIIGDEEGNVRAVKFRKMDCQEQIDS 359
Query: 651 KSTN---VKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707
D +++AIG N + + LK +E I+V+++ T+IP
Sbjct: 360 GERRFLPCGDAECKLEADAVIVAIGNGSNP--IMAETTRLKTSERGTIVVDEDQRTSIPG 417
Query: 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
++A GD++ G +A +G A+ I
Sbjct: 418 VFAGGDIILGAATVIRAMGQGKRAAKSI 445
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 83/401 (20%), Positives = 149/401 (37%), Gaps = 92/401 (22%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHS 452
V VIGAGP G A LA+ G ++ +E GG N+ IP
Sbjct: 540 VAVIGAGPAGLSAGYFLARAGHPVTVFEK----KEK--PGGVVKNI--IP---------- 581
Query: 453 FENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTG 512
E+ I+ +++ +++ L K + ++F +G
Sbjct: 582 ---------EFRISAESIQKDIE-------------------LVKFHGVEFKYG------ 607
Query: 513 KIQNNFHEIQIINKTKETITAKYIIIATGSKA-----------RSFPGVKFDENLILSNK 561
+ ++ N+ KY+I+A G+ R ++F K
Sbjct: 608 -CSPDLTVAELKNQG-----YKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRA----FK 657
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFLNTVDEEIAKKAFH 619
+ + K + ++G G ++ R+ +VT++ + E ++A
Sbjct: 658 EGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALE 717
Query: 620 --LLNKQGLNIILNTKIHDIKINKENVLI---NYSNKSTNVKT-EIITSIFDKLLIAIGR 673
+ K+ L+ D + E + + + S + V T E + D ++ A+G
Sbjct: 718 DGVDFKELLSPE---SFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGE 774
Query: 674 IPNTNNLNIDKIGLKVNENNFIIVNDNC-ETNIPNIYAIGDVVRGPMLAHKAEEEGIMVA 732
+T+ L K G+ ++E + +VN ETNI N++ IGD RGP +A +G A
Sbjct: 775 QVDTDLLQ--KNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAA 832
Query: 733 EHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNIS 773
I + +N V FP V E Y KK +
Sbjct: 833 NAIL-SREGLN----SDVDKVFPINEEVRLAEVYQKKGILV 868
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 72/338 (21%), Positives = 128/338 (37%), Gaps = 66/338 (19%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M + +D+I+IG GP G A I + T I+ KD+ GG
Sbjct: 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIE--KDD-----FGG------------- 40
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
Q + + E V GI +Q+M ++ + +KF
Sbjct: 41 -QITITSEVVNYP----GILNTTGPELMQEMRQQA---------------QDFGVKFLQA 80
Query: 507 HAI---FTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS--FPG-VKFDENLILSN 560
+ F G I+ I + ++IATG+ R FPG +F +
Sbjct: 81 EVLDVDFDGDIKT-------IKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYC 133
Query: 561 KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHL 620
+ +IG G E R S+VT++ +F T + IA+K
Sbjct: 134 ATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF--TCAKLIAEKV--- 188
Query: 621 LNKQGLNIILNTKIH----DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
N + + NT++ D + + N + + T K F + + +G P+
Sbjct: 189 KNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFG-VFVFVGYAPS 247
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDV 714
+ + K +++++ +I N++ ETN+P +YA GD+
Sbjct: 248 SE---LFKGVVELDKRGYIPTNEDMETNVPGVYAAGDL 282
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555 |
| >gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 6e-07
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+DV+VIGAG G A+ LA+ G K ++
Sbjct: 1 MPMYDVVVIGAGLNGLAAAALLARAGLKVTVLE 33
|
Length = 487 |
| >gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 22/163 (13%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+DV+V+GAGP G A+ RLA G + ++ +++F C G + +AL +
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLE-----KKSFPRYKPCG--GALSPRALEELD 53
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKN-----NIIKKNNSGILFLF---KKNKIK 502
E + N + +E +I ++ L ++ +
Sbjct: 54 LPGELIVNL-----VRGARFFSPNGDSVEIPIETELAYVIDRDAFD-EQLAERAQEAGAE 107
Query: 503 FFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545
G + ++ + I+ ++ T+TAK +I A GS++
Sbjct: 108 LRLGTRV-LDVEIHDDRVVVIVRGSEGTVTAKIVIGADGSRSI 149
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 9e-07
Identities = 59/278 (21%), Positives = 104/278 (37%), Gaps = 50/278 (17%)
Query: 495 LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKY--IIIATGS--------KA 544
L +++ ++F + G+ + T E + +Y + +ATG+
Sbjct: 182 LLERSGVEFKLNVRV--GR-----------DITLEELLKEYDAVFLATGAGKPRPLDIPG 228
Query: 545 RSFPGVKF-DENLILSNKGALEMIN-------VPKKLCIIGAGVIGLEIGSIWRRLG-SE 595
GV F + L NK L K++ +IG G ++ RLG
Sbjct: 229 EDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKS 288
Query: 596 VTIL-------EMSSNFLNTVDEEI--AKKAFH--LLNKQGLNIILNT--KIHDIKINKE 642
VT E + E+ A + L Q I N ++ +K +
Sbjct: 289 VTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRV 348
Query: 643 NVLINYSNKSTNVKTEIITSIF----DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVN 698
+I + D +++AIG + + + + GLK+++ I V+
Sbjct: 349 EPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVD 408
Query: 699 DN-CETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+N +T+IP ++A GD VRG L A EG A+ I
Sbjct: 409 ENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAI 446
|
Length = 457 |
| >gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 384 SFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
S + ++ D+ VIG GP G A+I LA+ G A +
Sbjct: 1 SLMEKEHTDIAVIGGGPAGLAAAIALARAGASVALVA 37
|
Length = 388 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 59/228 (25%), Positives = 97/228 (42%), Gaps = 37/228 (16%)
Query: 536 IIIATG-SKAR-------SFPGVKFDEN--LILSN-KGALEMINVPKKLCIIGAGVIGLE 584
+ I TG R + GV + L N A + V K++ +IG G ++
Sbjct: 229 VFIGTGAGLPRFLGIPGENLGGV-YSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMD 287
Query: 585 IGSIWRRLGSE-VTIL------EMSSNFLNTVDE-EIAKKA---FHLLNKQGLNIILNTK 633
+RLG+E VTI+ EM + + +E E AK+ F L + I+ +
Sbjct: 288 AARTAKRLGAESVTIVYRRGREEMPA----SEEEVEHAKEEGVEFEWL-AAPVEILGDEG 342
Query: 634 IHD-IKINKENVLINYSNKSTNVKTEIITSIF----DKLLIAIGRIPNTNNLNIDKIGLK 688
++ + + + S + I S F D ++ AIG+ PN L+ GL+
Sbjct: 343 RVTGVEF--VRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTP-GLE 399
Query: 689 VNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+N II +D T++P ++A GD+V G A +G AE I
Sbjct: 400 LNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAI 447
|
Length = 457 |
| >gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
A +V +P + E + K G+ V ++LI +E DK +E+PAP G + +I
Sbjct: 104 AAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIK 161
Query: 62 ITDGSIVTSNQVIALIDT 79
+ G V++ +I + +
Sbjct: 162 VNVGDKVSTGSLIMVFEV 179
|
Length = 633 |
| >gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 8e-06
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 53/209 (25%)
Query: 529 ETITAKYIIIATGSKARSF--PGVKFDENLILSNKGALEMINV--------P----KKLC 574
+ AK +I+ATG++ R+ PG DE NKG V P K++
Sbjct: 307 AVLKAKTVILATGARWRNMNVPGE--DEYR---NKG------VAYCPHCDGPLFKGKRVA 355
Query: 575 IIGAGVIGLE--I---GSIWRRLGSEVTILEMSSNFLNTV--DEEIAKKAFHLLNKQGLN 627
+IG G G+E I G + VT+LE F + D+ + K L N +
Sbjct: 356 VIGGGNSGVEAAIDLAG-----IVKHVTVLE----FAPELKADQVLQDKLRSLPN---VT 403
Query: 628 IILNTKIHDIKINKENVL-INYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKI 685
II N + ++ + + V + Y +++T + + + +F + IG +PNT L K
Sbjct: 404 IITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVF----VQIGLVPNTEWL---KG 456
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDV 714
+++N IIV+ T++P ++A GD
Sbjct: 457 TVELNRRGEIIVDARGATSVPGVFAAGDC 485
|
Length = 517 |
| >gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 382 LMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
L+ ++ DV ++GAGP G A+ LA+ G K A E + GG
Sbjct: 20 LLDYL---EVDVAIVGAGPSGLTAAYYLAKAGLKVAVF------ERKLSFGG 62
|
Length = 257 |
| >gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
E+K+P + ++ E ++ K G+ V ++LI +E+DK +E+P+ GII +I +
Sbjct: 1 TEIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVK 59
Query: 64 DGSIVTSNQVIALID 78
G + VIA ++
Sbjct: 60 VGDTLPVGGVIATLE 74
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546 |
| >gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACID 420
DV+VIG+G G A++ A+ G K A ++
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVE 29
|
This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401 |
| >gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 32/170 (18%), Positives = 57/170 (33%), Gaps = 35/170 (20%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP-SKALLQT 449
+DV+++GAGP G A+ RLA+ G ++ K +E G P L +
Sbjct: 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLE--KGSE-----------PGAKPCCGGGL-S 49
Query: 450 SHSFENV---KNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
+ E + + E + + K I G + K K+
Sbjct: 50 PRALEELIPDFDEEIERKVTGARIYF-----PGEKVAIEVPVGEGYIVDRAKF-DKWLAE 103
Query: 507 HAIFTGK-----------IQNNFHEIQIINKTKETITAKYIIIATGSKAR 545
A G I+ + + + + + AK +I A G +
Sbjct: 104 RAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153
|
Length = 396 |
| >gnl|CDD|216319 pfam01134, GIDA, Glucose inhibited division protein A | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 1e-04
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 9/56 (16%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447
DVIVIG G G A++ A++G K I T + C PS +
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLITH---------NTDTIAELSCNPSIGGI 47
|
Length = 391 |
| >gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 1e-04
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 19 TLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
T++ KEG+ V + L +E K+ E+ AP G++ +I++ +G V + Q++ +I
Sbjct: 9 TVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 32/196 (16%)
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTIL------EMSSNFLNTVDEEI--AKKA- 617
I V KK+ ++G G + ++ RLG+EV I+ E+ + EE+ AK+
Sbjct: 278 IKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARV-----EEVHHAKEEG 332
Query: 618 --FHLLNKQGLNIILNTK-----IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIA 670
F LL + I+ + + IK+ + + ++ D ++++
Sbjct: 333 VIFDLLT-NPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMS 391
Query: 671 IGRIPNTNNLNIDKIGLKVNENNFIIVNDNC-ETNIPNIYAIGDVVRG------PMLAHK 723
+G PN + K GLK+N+ I+ ++ T+ ++A GD V G M A K
Sbjct: 392 LGTSPNPLISSTTK-GLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGK 450
Query: 724 AEEEGIMVAEHISGQK 739
+ I E++S +
Sbjct: 451 KAAKAI--DEYLSKKW 464
|
Length = 464 |
| >gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 35/181 (19%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL--GGTC--TNVGCIPSKAL 446
+DVIVIG G G +A+I A+ G + ID+ K + GG C TN +
Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIDKGKKLGRKILISGGGRCNVTN--SVEPDEF 58
Query: 447 LQTSHSFEN---VKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF--------- 494
L S N +K++ + + E +K+ + G LF
Sbjct: 59 L--SRYPGNPHFLKSALSRFT------PWDFIAFFEELGVPLKEEDHGRLFPVSDKASDI 110
Query: 495 ---LF---KKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548
L K+ +K + +++ ++ E + A +++ATG S+P
Sbjct: 111 VDALLNELKELGVKIRTRTRV-LSVEKDDDGRFRVDTDGGEELEADSLVLATGGL--SWP 167
Query: 549 G 549
Sbjct: 168 K 168
|
Length = 405 |
| >gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 385 FIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ FDV+VIG G G A+I A+ G K A +
Sbjct: 1 VMTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLS 36
|
Length = 562 |
| >gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+ + DV +IGAG G A+ L Q G I
Sbjct: 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVI 37
|
Length = 443 |
| >gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 36/171 (21%), Positives = 52/171 (30%), Gaps = 49/171 (28%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN--VGCI-PSKALLQ 448
DV+V+G GP G A+I A+LG K + E LGG T+ VG + Q
Sbjct: 1 DVVVVGGGPAGVAAAIAAARLGAKVLLV------ERRGWLGGMATSGLVGTDDGNYDRGQ 54
Query: 449 TSHSF------ENVKNSFFEYGINTQNVTLN-------LQKMLERKNNIIKKNNSGILFL 495
+ + L +ML
Sbjct: 55 VIGGIAREFLRRLRARGGPLGNRTSGPWPFDPEVAKLVLDEMLAEAG------------- 101
Query: 496 FKKNKIKFFHGH----AIFTGKIQNNFHEIQIINKTKE-TITAKYIIIATG 541
+ + G+I + + NK+ TI AK I ATG
Sbjct: 102 -----VTVLLHTRVVGVVKEGRIT----GVTVENKSGRLTIRAKVFIDATG 143
|
This family of proteins contains FAD dependent oxidoreductases and related proteins. Length = 415 |
| >gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
+ G+ V + L IE K+ E+ AP DG++ +I++ +G V +A+I
Sbjct: 87 EVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVI 138
|
Length = 140 |
| >gnl|CDD|177739 PLN00128, PLN00128, Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 5e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
I++ +D +V+GAG G A+I L++ GF TACI
Sbjct: 46 IVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACI 79
|
Length = 635 |
| >gnl|CDD|236375 PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-04
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
I++ +DV+V+GAG G A++ +A+ G KTACI
Sbjct: 8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACI 41
|
Length = 598 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-04
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 665 DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC-ETNIPNIYAIGDVVRGPMLAHK 723
D +L+A+G L + + G++++E + DN +T+ P ++A GD+ RG L
Sbjct: 390 DLVLLAMGFTGPEAGL-LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVW 448
Query: 724 AEEEGIMVAEHI 735
A EG A I
Sbjct: 449 AIAEGRQAARAI 460
|
Length = 471 |
| >gnl|CDD|240286 PTZ00139, PTZ00139, Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+++ +D +V+GAG G A++ L +LG+KTACI
Sbjct: 25 VIDHTYDAVVVGAGGAGLRAALGLVELGYKTACI 58
|
Length = 617 |
| >gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
DVI++GAGP G A+ LA+ G K A E + GG
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKAGLKVAIF------ERKLSFGG 67
|
Length = 262 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 36/181 (19%), Positives = 71/181 (39%), Gaps = 49/181 (27%)
Query: 570 PKKLCIIGAGVIGLEI-GSIWRRLGS-----EVTILEMSSNFLNTVDEEIAKKAFHLLNK 623
K+L ++G G G+EI ++ RRL +VT L ++ L ++ + LL +
Sbjct: 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVT-LIAGASLLPGFPAKVRRLVLRLLAR 203
Query: 624 QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP-----NTN 678
+G+ + + +++ + T D +L A G +
Sbjct: 204 RGIEVHEGA--PVTRGPDGALILA----------DGRTLPADAILWATGARAPPWLAES- 250
Query: 679 NLNIDKIGLKVNENNFIIVNDNCET-NIPNIYAIGDV---------------VR-GPMLA 721
GL ++E+ F+ V+ ++ + P+++A GD VR P+LA
Sbjct: 251 -------GLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILA 303
Query: 722 H 722
Sbjct: 304 A 304
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.001
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 665 DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG 717
D +++++G PN + GL++N I+V++ +++IP IYA GD+VRG
Sbjct: 676 DLVIVSVGVSPNPLVPSSIP-GLELNRKGTIVVDEEMQSSIPGIYAGGDIVRG 727
|
Length = 752 |
| >gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.001
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTA 417
FDV+VIG G G A++ A+ G + A
Sbjct: 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVA 29
|
Length = 422 |
| >gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.001
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID 420
FDVI+IG GP G +A+I A+ G + ID
Sbjct: 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLID 33
|
Length = 408 |
| >gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
M + DVIV+GAG G VA+ LA G + +D+ +NE N LGG
Sbjct: 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQ--ENEAN--LGG 43
|
Length = 549 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 42/226 (18%)
Query: 532 TAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRR 591
K + I A V F L G E + K++ +IG G ++ RR
Sbjct: 234 LGKRLPIPGEDAAGVLDAVDF-----LRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARR 288
Query: 592 LG-SEVTIL------EMSSNFLNTVDEEI--------------AKKAFHLLNKQGLNIIL 630
LG EVTI+ +M ++ DEEI ++ G +
Sbjct: 289 LGAEEVTIVYRRTREDMPAH-----DEEIEEALREGVEINWLRTPVEI-EGDENGATGLR 342
Query: 631 NTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN 690
+ ++++++ + + V E T D +++AIG+ + ++ ++ +
Sbjct: 343 VITVEKMELDEDG-------RPSPVTGEEETLEADLVVLAIGQ--DIDSAGLESVPGVEV 393
Query: 691 ENNFIIVNDNCE-TNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+ V+ N T P ++A GD+V GP A G A +I
Sbjct: 394 GRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNI 439
|
Length = 564 |
| >gnl|CDD|223758 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
P K+ ++G GV+G I LG++VTIL+++ + L +D+ + H L NI
Sbjct: 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRV-HTLYSTPSNIE 226
Query: 630 LNTKIHDIKINKENVLI 646
K D+ I VLI
Sbjct: 227 EAVKKADLVIGA--VLI 241
|
Length = 371 |
| >gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACI 419
FDVI+IG G G ++RLA+ G K A I
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEAGKKCAII 29
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase [Energy metabolism, Anaerobic]. Length = 419 |
| >gnl|CDD|235540 PRK05641, PRK05641, putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQ 72
+EG+ V + L+ +E K+ E+PAP+DG++ KI++ +G V + Q
Sbjct: 101 REGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQ 147
|
Length = 153 |
| >gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
K DV ++GAGP G ++ LA+ G ++
Sbjct: 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLE 32
|
Length = 387 |
| >gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424
+ DV+++GAGP G + L Q G + ++ W
Sbjct: 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPT 44
|
Length = 500 |
| >gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 29/194 (14%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK-KAFHLLNKQGLNI- 628
K++ +IG G ++ +RLG VTI+ + T E A+ + H ++G+N+
Sbjct: 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIV-----YRRTKSEMPARVEELHHALEEGINLA 502
Query: 629 ILNTKIHDIKINKENVLI------------NYSNKSTNVKT-EIITSIFDKLLIAIGRIP 675
+L I + + + + S + + T EI D +++A+G
Sbjct: 503 VLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALG--- 559
Query: 676 NTNN--LNIDKIGLKVNENNFIIVN-DNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVA 732
NT N + + GLK N+ I V + T+I +Y+ GD RG A +A +G A
Sbjct: 560 NTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAA 619
Query: 733 EHISGQKHSINFNA 746
+ I G I F
Sbjct: 620 KEIVG---EIPFTP 630
|
Length = 944 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 866 | |||
| PRK05704 | 407 | dihydrolipoamide succinyltransferase; Validated | 100.0 | |
| TIGR01347 | 403 | sucB 2-oxoglutarate dehydrogenase complex dihydrol | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PLN02744 | 539 | dihydrolipoyllysine-residue acetyltransferase comp | 100.0 | |
| TIGR02927 | 590 | SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo | 100.0 | |
| KOG1335|consensus | 506 | 100.0 | ||
| TIGR01349 | 435 | PDHac_trf_mito pyruvate dehydrogenase complex dihy | 100.0 | |
| PLN02528 | 416 | 2-oxoisovalerate dehydrogenase E2 component | 100.0 | |
| COG0508 | 404 | AceF Pyruvate/2-oxoglutarate dehydrogenase complex | 100.0 | |
| TIGR01348 | 546 | PDHac_trf_long pyruvate dehydrogenase complex dihy | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PLN02226 | 463 | 2-oxoglutarate dehydrogenase E2 component | 100.0 | |
| PTZ00144 | 418 | dihydrolipoamide succinyltransferase; Provisional | 100.0 | |
| KOG0557|consensus | 470 | 100.0 | ||
| PRK11854 | 633 | aceF pyruvate dehydrogenase dihydrolipoyltransacet | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| PRK11855 | 547 | dihydrolipoamide acetyltransferase; Reviewed | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| KOG0558|consensus | 474 | 100.0 | ||
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK11856 | 411 | branched-chain alpha-keto acid dehydrogenase subun | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| KOG0559|consensus | 457 | 100.0 | ||
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| KOG0405|consensus | 478 | 100.0 | ||
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK14843 | 347 | dihydrolipoamide acetyltransferase; Provisional | 100.0 | |
| PRK11857 | 306 | dihydrolipoamide acetyltransferase; Reviewed | 100.0 | |
| KOG4716|consensus | 503 | 100.0 | ||
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| PF00198 | 231 | 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| PRK12270 | 1228 | kgd alpha-ketoglutarate decarboxylase; Reviewed | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 99.98 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.98 | |
| KOG1336|consensus | 478 | 99.97 | ||
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.97 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 99.97 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.97 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.97 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.97 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.97 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 99.97 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.96 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.96 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.96 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.95 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.95 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.95 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.94 | |
| KOG2495|consensus | 491 | 99.94 | ||
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.94 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.94 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.94 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.93 | |
| KOG1346|consensus | 659 | 99.92 | ||
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.92 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.92 | |
| KOG0404|consensus | 322 | 99.92 | ||
| PF02852 | 110 | Pyr_redox_dim: Pyridine nucleotide-disulphide oxid | 99.89 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.89 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.82 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.8 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.76 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.76 | |
| PF00364 | 74 | Biotin_lipoyl: Biotin-requiring enzyme; InterPro: | 99.72 | |
| KOG0399|consensus | 2142 | 99.72 | ||
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.71 | |
| KOG2755|consensus | 334 | 99.7 | ||
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.7 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.7 | |
| PRK14875 | 371 | acetoin dehydrogenase E2 subunit dihydrolipoyllysi | 99.69 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.69 | |
| PRK06748 | 83 | hypothetical protein; Validated | 99.65 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.64 | |
| KOG1399|consensus | 448 | 99.6 | ||
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.59 | |
| PRK11892 | 464 | pyruvate dehydrogenase subunit beta; Provisional | 99.58 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.57 | |
| KOG1800|consensus | 468 | 99.5 | ||
| PRK05889 | 71 | putative acetyl-CoA carboxylase biotin carboxyl ca | 99.49 | |
| KOG3851|consensus | 446 | 99.48 | ||
| cd06663 | 73 | Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar | 99.44 | |
| PRK08225 | 70 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.37 | |
| PRK11854 | 633 | aceF pyruvate dehydrogenase dihydrolipoyltransacet | 99.36 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.36 | |
| TIGR02927 | 590 | SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo | 99.35 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.34 | |
| COG0511 | 140 | AccB Biotin carboxyl carrier protein [Lipid metabo | 99.31 | |
| PF00302 | 206 | CAT: Chloramphenicol acetyltransferase; InterPro: | 99.3 | |
| PRK07051 | 80 | hypothetical protein; Validated | 99.3 | |
| PRK13757 | 219 | chloramphenicol acetyltransferase; Provisional | 99.25 | |
| PRK06549 | 130 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 99.25 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.23 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 99.23 | |
| PRK11855 | 547 | dihydrolipoamide acetyltransferase; Reviewed | 99.22 | |
| PRK05641 | 153 | putative acetyl-CoA carboxylase biotin carboxyl ca | 99.19 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 99.18 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 99.17 | |
| PF02817 | 39 | E3_binding: e3 binding domain; InterPro: IPR004167 | 99.15 | |
| TIGR01348 | 546 | PDHac_trf_long pyruvate dehydrogenase complex dihy | 99.14 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 99.14 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 99.13 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.13 | |
| PLN02983 | 274 | biotin carboxyl carrier protein of acetyl-CoA carb | 99.13 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 99.12 | |
| cd06850 | 67 | biotinyl_domain The biotinyl-domain or biotin carb | 99.11 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 99.11 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 99.09 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 99.08 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.08 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.07 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 99.07 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 99.05 | |
| TIGR00531 | 156 | BCCP acetyl-CoA carboxylase, biotin carboxyl carri | 99.04 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 99.03 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.02 | |
| cd06849 | 74 | lipoyl_domain Lipoyl domain of the dihydrolipoyl a | 99.02 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.01 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 99.01 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 99.0 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 99.0 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.99 | |
| PRK06302 | 155 | acetyl-CoA carboxylase biotin carboxyl carrier pro | 98.99 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.99 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.98 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.97 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.97 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 98.97 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.96 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.95 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.95 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.95 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.94 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 98.93 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.93 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.92 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 98.89 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 98.88 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.85 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.84 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.83 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.82 | |
| TIGR02712 | 1201 | urea_carbox urea carboxylase. Members of this fami | 98.82 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 98.77 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.76 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 98.76 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.75 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 98.71 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.67 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.66 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 98.61 | |
| COG4845 | 219 | Chloramphenicol O-acetyltransferase [Defense mecha | 98.6 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 98.58 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.55 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.54 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.54 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.53 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 98.52 | |
| COG4770 | 645 | Acetyl/propionyl-CoA carboxylase, alpha subunit [L | 98.52 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.51 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.5 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.49 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.47 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.47 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.47 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.47 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 98.46 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 98.45 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.45 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.45 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.44 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.44 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.43 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.41 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.4 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.4 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.37 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.36 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.36 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.33 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.32 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.32 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.32 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.32 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.31 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.31 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 98.3 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.29 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.27 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.27 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.26 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.25 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.25 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.25 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.24 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.24 | |
| KOG2820|consensus | 399 | 98.24 | ||
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.23 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.22 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.21 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.2 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.2 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.2 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 98.19 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.19 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.18 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.17 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.17 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 98.17 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.17 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.16 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.16 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.15 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.15 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.15 | |
| KOG0369|consensus | 1176 | 98.14 | ||
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.14 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.14 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.13 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 98.13 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.13 | |
| cd06848 | 96 | GCS_H Glycine cleavage H-protein. Glycine cleavage | 98.12 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.11 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.09 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.09 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.08 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.08 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.07 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 98.07 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.06 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 98.06 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.05 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.05 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.04 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.04 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.02 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.01 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 98.0 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.0 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 97.98 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.98 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.98 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.97 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 97.97 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 97.96 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 97.95 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.94 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.94 | |
| KOG1335|consensus | 506 | 97.93 | ||
| PRK06996 | 398 | hypothetical protein; Provisional | 97.93 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 97.91 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 97.91 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.9 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.9 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 97.9 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 97.89 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 97.89 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 97.88 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 97.88 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 97.87 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 97.87 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.87 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 97.86 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 97.86 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.86 | |
| KOG2415|consensus | 621 | 97.85 | ||
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 97.85 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.84 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 97.82 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.81 | |
| TIGR03077 | 110 | not_gcvH glycine cleavage protein H-like protein, | 97.81 | |
| PLN02985 | 514 | squalene monooxygenase | 97.81 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 97.8 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 97.79 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 97.77 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 97.76 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.76 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 97.76 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 97.74 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 97.73 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.73 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 97.73 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 97.72 | |
| KOG0368|consensus | 2196 | 97.72 | ||
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 97.71 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 97.7 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 97.7 | |
| PRK00624 | 114 | glycine cleavage system protein H; Provisional | 97.69 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 97.69 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.68 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 97.68 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 97.67 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.66 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.66 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.64 | |
| KOG0238|consensus | 670 | 97.64 | ||
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 97.63 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 97.63 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.62 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 97.62 | |
| PRK13380 | 144 | glycine cleavage system protein H; Provisional | 97.61 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.6 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.6 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 97.58 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.58 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.57 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.56 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.55 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.55 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.55 | |
| PRK05675 | 570 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.55 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 97.53 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 97.53 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.52 | |
| KOG0399|consensus | 2142 | 97.51 | ||
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 97.51 | |
| KOG0029|consensus | 501 | 97.51 | ||
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.5 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 97.5 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 97.5 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.49 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.49 | |
| PRK06370 | 463 | mercuric reductase; Validated | 97.48 | |
| KOG1336|consensus | 478 | 97.48 | ||
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 97.48 | |
| PRK06116 | 450 | glutathione reductase; Validated | 97.47 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.47 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.46 | |
| PLN02507 | 499 | glutathione reductase | 97.45 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 97.45 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 97.45 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.45 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 97.44 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.43 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.43 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.42 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.42 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.41 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.41 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.39 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 97.39 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 97.38 | |
| PLN02463 | 447 | lycopene beta cyclase | 97.38 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.38 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.37 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.36 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.35 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.35 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.35 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.35 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.35 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.35 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.34 | |
| PLN02568 | 539 | polyamine oxidase | 97.34 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.34 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.34 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.33 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 97.33 | |
| PRK01202 | 127 | glycine cleavage system protein H; Provisional | 97.32 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.32 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.31 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.3 | |
| PRK09783 | 409 | copper/silver efflux system membrane fusion protei | 97.3 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.29 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.28 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.28 | |
| KOG2614|consensus | 420 | 97.28 | ||
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.26 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.25 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.25 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.24 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.24 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 97.23 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.23 | |
| KOG2495|consensus | 491 | 97.21 | ||
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.2 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.2 | |
| KOG2311|consensus | 679 | 97.19 | ||
| KOG1399|consensus | 448 | 97.18 | ||
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.18 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.18 | |
| PRK10559 | 310 | p-hydroxybenzoic acid efflux subunit AaeA; Provisi | 97.18 | |
| TIGR00998 | 334 | 8a0101 efflux pump membrane protein (multidrug res | 97.18 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.17 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.17 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.16 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.16 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 97.15 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.15 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 97.15 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.14 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.13 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.12 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.11 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.11 | |
| PF13533 | 50 | Biotin_lipoyl_2: Biotin-lipoyl like | 97.1 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.09 | |
| TIGR00527 | 127 | gcvH glycine cleavage system H protein. The genome | 97.08 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.08 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.08 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.07 | |
| TIGR01816 | 565 | sdhA_forward succinate dehydrogenase, flavoprotein | 97.07 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 97.07 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.06 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.05 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.05 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.05 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.05 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.03 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.02 | |
| TIGR01730 | 322 | RND_mfp RND family efflux transporter, MFP subunit | 97.01 | |
| PLN02546 | 558 | glutathione reductase | 96.99 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 96.95 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 96.93 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 96.93 | |
| PRK12784 | 84 | hypothetical protein; Provisional | 96.93 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 96.92 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.92 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 96.91 | |
| PRK10476 | 346 | multidrug resistance protein MdtN; Provisional | 96.89 | |
| PLN02676 | 487 | polyamine oxidase | 96.89 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 96.85 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 96.85 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 96.84 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 96.83 | |
| PF13533 | 50 | Biotin_lipoyl_2: Biotin-lipoyl like | 96.82 | |
| KOG2404|consensus | 477 | 96.82 | ||
| PRK06185 | 407 | hypothetical protein; Provisional | 96.81 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 96.81 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 96.81 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 96.8 | |
| KOG1298|consensus | 509 | 96.79 | ||
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 96.78 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 96.78 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 96.77 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 96.77 | |
| PRK15136 | 390 | multidrug efflux system protein EmrA; Provisional | 96.76 | |
| KOG2852|consensus | 380 | 96.75 | ||
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 96.75 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 96.75 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 96.73 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 96.71 | |
| KOG2853|consensus | 509 | 96.7 | ||
| KOG0685|consensus | 498 | 96.69 | ||
| PF01597 | 122 | GCV_H: Glycine cleavage H-protein; InterPro: IPR00 | 96.68 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.68 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 96.67 | |
| PRK09578 | 385 | periplasmic multidrug efflux lipoprotein precursor | 96.67 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 96.66 | |
| PRK03598 | 331 | putative efflux pump membrane fusion protein; Prov | 96.65 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 96.64 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 96.63 | |
| PLN02487 | 569 | zeta-carotene desaturase | 96.61 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 96.61 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 96.6 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 96.6 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 96.59 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 96.55 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 96.55 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 96.55 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 96.54 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 96.52 |
| >PRK05704 dihydrolipoamide succinyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-83 Score=700.94 Aligned_cols=379 Identities=54% Similarity=0.875 Sum_probs=327.8
Q ss_pred CccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 1 m~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
|+ ++|+||+||++|+||+|++|+|++||.|++||+|++|||||+++||+||++|+|.++++++|+.|++|++|++++.+
T Consensus 1 m~-~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (407)
T PRK05704 1 MM-VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDTVTVGQVLGRIDEG 79 (407)
T ss_pred CC-eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 44 59999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred Cccccc---c-ccc-c---ccc----c-ccccccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhhccccc
Q psy9583 81 ISKLSS---K-TEI-K---NKK----D-IKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNIN 147 (866)
Q Consensus 81 ~~~~~~---~-~~~-~---~~~----~-~~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~~~~~~ 147 (866)
++..+. + .++ + +++ + .......+||+||+||+|+||||++| +|||++|||+++||++|+...+..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v-~gtG~~GrI~~~DV~~~~~~~~~~~ 158 (407)
T PRK05704 80 AAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARKLAAENGLDASAV-KGTGKGGRVTKEDVLAALAAAAAAP 158 (407)
T ss_pred CcccccCCCCCCCCCCCCCCCCCCCCccCCCccccCCchhhhHHhhcCCChhhC-CCCCCCCcccHHHHHHHhhcccccC
Confidence 432110 0 000 0 000 0 00112468999999999999999999 8999999999999999974321111
Q ss_pred cccccccCCCccccccccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccC
Q psy9583 148 EEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLG 227 (866)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t 227 (866)
.++. ..+. ...+........+.+||++|||+||++|++||+++||||++.++|+|+|+++|+++++.+.++.|.|+|
T Consensus 159 ~~~~--~~~~-~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~~~~~~~~~~~~kls 235 (407)
T PRK05704 159 AAPA--AAAP-AAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLG 235 (407)
T ss_pred CCCC--CCCC-cCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHHHHhhhHhhcCCCcC
Confidence 0000 0000 000000001123568999999999999999999999999999999999999999999877666689999
Q ss_pred HHHHHHHHHHHHHHhCCccceEEeCCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q psy9583 228 FMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLP 307 (866)
Q Consensus 228 ~~~~~~ka~~~al~~~P~~n~~~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 307 (866)
+++||+||+++||++||.||++|+++++++++++||||||++++||+||||||+|++|+.||++++++|.+|+|+|+|++
T Consensus 236 ~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar~g~L~~ 315 (407)
T PRK05704 236 FMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSI 315 (407)
T ss_pred HHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 308 EEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 308 ~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
+|++||||||||+|++|+.+|+|||||||+||||+|++.++|++.+|++++|++|+++|+||||++||+++++|+..
T Consensus 316 ~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~ 392 (407)
T PRK05704 316 EELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVT 392 (407)
T ss_pred HHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECCEEEEEEEEEEEEEechhhhCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988764
|
|
| >TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-82 Score=694.96 Aligned_cols=375 Identities=50% Similarity=0.848 Sum_probs=326.0
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCcc
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDISK 83 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~~ 83 (866)
.+|+||+||++|+||+|++|+|++||.|++||+|++|||||+++|++||.+|+|.++++++|+.|++|++|++++.+++.
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~~~~ 80 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDTVESGQVLAILEEGNDA 80 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCEeCCCCEEEEEecCCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999864321
Q ss_pred cc---c-cc---cccc-cc--c---ccccccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhhcccccccc
Q psy9583 84 LS---S-KT---EIKN-KK--D---IKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEK 150 (866)
Q Consensus 84 ~~---~-~~---~~~~-~~--~---~~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~~~~~~~~~ 150 (866)
.+ + .. ..+. .+ + ....+..+||+||+||+|+||||+.| +|||++|||+++||++|+...+..+ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v-~gtG~~GrI~~~DV~~~~~~~~~~~--~ 157 (403)
T TIGR01347 81 TAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSAV-PGTGVTGRVTKEDIIKKTEAPASAQ--A 157 (403)
T ss_pred cccccccccCCCCCCCCCCCCCCCcCccccccCCchhhhHHHHcCCChhhC-CCCCCCCcccHHHHHHhhhcccccC--C
Confidence 10 0 00 0000 00 0 01123468999999999999999999 8999999999999999974311110 0
Q ss_pred ccccCCCccccccccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHH
Q psy9583 151 QEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMS 230 (866)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~ 230 (866)
+. ..+..+. + .......+.+||++|||+||++|++||+++||+|++.++|+|+|+++|+++++.+.++.|.++|+++
T Consensus 158 ~~-~~~~~~~-~-~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~ 234 (403)
T TIGR01347 158 PA-PAAAAKA-P-ANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYKEEFEKKHGVKLGFMS 234 (403)
T ss_pred CC-CCcccCC-c-cccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHHHHhhhHhhcCCCcCHHH
Confidence 00 0000000 0 0001123568999999999999999999999999999999999999999999877666689999999
Q ss_pred HHHHHHHHHHHhCCccceEEeCCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCcccc
Q psy9583 231 FFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEM 310 (866)
Q Consensus 231 ~~~ka~~~al~~~P~~n~~~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~ 310 (866)
||+||+++||++||.||++|+++++++++++||||||++++||+|||||++|++|+.+|++++++|.+|+|+|+|+++|+
T Consensus 235 ~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar~gkL~~~d~ 314 (403)
T TIGR01347 235 FFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDM 314 (403)
T ss_pred HHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 311 SGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 311 ~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
+||||||||+|++|+.+|+|||||||+||||+|++.++|++.+|++++|++|+++|+||||++||+++++|+..
T Consensus 315 ~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~ 388 (403)
T TIGR01347 315 TGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVT 388 (403)
T ss_pred CCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEECCeEEEEEEEEEEEEecchhhChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988764
|
dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase. |
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-80 Score=683.85 Aligned_cols=452 Identities=46% Similarity=0.756 Sum_probs=421.2
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+.+||++|||+||||+.||.++++.|.+|++||+. ..+||+|+|.||+|+|.+++.++.++.+.+....+|+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~------~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~ 75 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKG------ERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISA 75 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeec------CCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceec
Confidence 34699999999999999999999999999999996 479999999999999999999999988876333688887
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
....++|.++..+++.+...+...+..++++++|+++.|++.+.++ +++.|...+.++++++++||||||+|+.|
T Consensus 76 ~~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~-----~~v~V~~~~~~~~~a~~iiIATGS~p~~~ 150 (454)
T COG1249 76 EVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDP-----HTVEVTGEDKETITADNIIIATGSRPRIP 150 (454)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCC-----CEEEEcCCCceEEEeCEEEEcCCCCCcCC
Confidence 7668999999999999888888999999999999999999999987 89999654348999999999999999999
Q ss_pred CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCE
Q psy9583 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~ 627 (866)
|+++.++..++++++.+.+.+.|++++|||||++|+|+|+.|+++|++||++++.+++++.+|+++++.+.+.|++.|+.
T Consensus 151 ~~~~~~~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~ 230 (454)
T COG1249 151 PGPGIDGARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVK 230 (454)
T ss_pred CCCCCCCCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeE
Confidence 99888888899999977777999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCC
Q psy9583 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707 (866)
Q Consensus 628 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~ 707 (866)
+++++.+++++..++++.+.++...+. ++++|.+++|+|++||++.|+|++.|++++++|+|.||++++|++||
T Consensus 231 i~~~~~v~~~~~~~~~v~v~~~~g~~~------~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~ 304 (454)
T COG1249 231 ILLNTKVTAVEKKDDGVLVTLEDGEGG------TIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPG 304 (454)
T ss_pred EEccceEEEEEecCCeEEEEEecCCCC------EEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCC
Confidence 999999999998777777777633322 78899999999999999999999999999999999999888899999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhC-CCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchh
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISG-QKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSR 786 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~ 786 (866)
|||+|||+++++++|.|.+||++||+||++ .....++..+|+++|++|++++||+||+||++.+++|.+.+++|..+.|
T Consensus 305 IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~r 384 (454)
T COG1249 305 IYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGR 384 (454)
T ss_pred EEEeeccCCCcccHhHHHHHHHHHHHHHhCCCCCcCcccCCCEEEECCCcceeeeCCHHHHHhcCCceEEEEeecccchh
Confidence 999999999999999999999999999997 5556789999999999999999999999999999999999999999999
Q ss_pred hhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHH
Q psy9583 787 ARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856 (866)
Q Consensus 787 ~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 856 (866)
+...++..||+|+++|+++++|||+|++|++|.|||+.+++||++++|.+|++.++|+|||++|.+.+++
T Consensus 385 a~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~ 454 (454)
T COG1249 385 AITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454 (454)
T ss_pred HHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998874
|
|
| >PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-80 Score=688.28 Aligned_cols=372 Identities=31% Similarity=0.453 Sum_probs=321.9
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC-EEecCCEEEEEecCCc
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS-IVTSNQVIALIDTDIS 82 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~-~v~~g~~l~~~~~~~~ 82 (866)
++|+||+||++|+||+|++|+|++||.|++||+|++|||||+++|++||.+|+|.+|++++|+ .|++|++|+++..+++
T Consensus 113 ~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~~~ 192 (539)
T PLN02744 113 QEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEE 192 (539)
T ss_pred ceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEccCcc
Confidence 689999999999999999999999999999999999999999999999999999999999996 7999999999843211
Q ss_pred c--------c-----cc-cc---cc---c------ccc--c--c--------cccccccchhHHHhhhhCCCCcccccCC
Q psy9583 83 K--------L-----SS-KT---EI---K------NKK--D--I--------KNLNTIVMPSAKKILSDNNLEISKINNG 124 (866)
Q Consensus 83 ~--------~-----~~-~~---~~---~------~~~--~--~--------~~~~~~~~p~~r~~a~~~~~d~~~v~~g 124 (866)
+ . ++ +. .+ . +++ . . ...+..+||+||+||+|+||||+.| +|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVDLs~V-~G 271 (539)
T PLN02744 193 DIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSI-KG 271 (539)
T ss_pred ccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHHHHHHcCCCHHHC-CC
Confidence 1 0 00 00 00 0 000 0 0 0112458999999999999999999 89
Q ss_pred CCCCCceeehhHHhhhhhccccccccccccCCCccccccccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeec
Q psy9583 125 TGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINM 204 (866)
Q Consensus 125 tg~~g~i~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~ 204 (866)
|||+|||+++||++|+........ .+ .+ .+.. ......+.+|+++|||.||++|++|++++||+|++.++|+
T Consensus 272 TGp~GRI~k~DV~a~~~~~~~~~~-~~---~~--~~~~--~~~~~~~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdv 343 (539)
T PLN02744 272 TGPDGRIVKADIEDYLASGGKGAT-AP---PS--TDSK--APALDYTDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRV 343 (539)
T ss_pred CCCCCcccHHHHHHHhhccccccC-CC---CC--cccC--CCCCccccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEc
Confidence 999999999999999743111100 00 00 0000 0011235689999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeCCeeEEccceeEEEEEecCCceEEeEEecCCCC
Q psy9583 205 QSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTM 284 (866)
Q Consensus 205 t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~ 284 (866)
|+|+++|+++++.+.+..|.|+|+++||+||+++||++||++|++|+++.+++++++||||||++++||+||||||+|++
T Consensus 344 t~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~ 423 (539)
T PLN02744 344 DKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDYIRQYHNVNINVAVQTENGLYVPVVKDADKK 423 (539)
T ss_pred HHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCcEEEeCCcceEEEEECCCCeEECcCCCcccC
Confidence 99999999999776665689999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCC-CcCccccccccCCCceEEEEeccceeeEEE--eCCeeEeeee
Q psy9583 285 SIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGG-VFGSMLSTPIINPPQSAILGVHAIKKRVIV--ENNNVVIRPI 361 (866)
Q Consensus 285 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g-~~g~~~~~~ii~~p~~~il~vg~~~~~~~~--~~~~~~ir~~ 361 (866)
|+.||++++++|.+++|+|+|+++|++||||||||+| +||+.+|||||||||+||||+|++.++|++ .+|++++|++
T Consensus 424 sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~ 503 (539)
T PLN02744 424 GLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASF 503 (539)
T ss_pred CHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcccceeEeEEeccCCeEEEeee
Confidence 9999999999999999999999999999999999998 899999999999999999999999999998 4899999999
Q ss_pred eeeeecccccccccchhhhhhhh
Q psy9583 362 NYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 362 ~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|+++|+||||++||+++++|+..
T Consensus 504 m~lsLs~DHRvIDGa~AA~FL~~ 526 (539)
T PLN02744 504 MSVTLSCDHRVIDGAIGAEWLKA 526 (539)
T ss_pred eEEeEecchhhhCcHHHHHHHHH
Confidence 99999999999999999988764
|
|
| >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-80 Score=708.03 Aligned_cols=381 Identities=32% Similarity=0.534 Sum_probs=322.2
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCcc
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDISK 83 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~~ 83 (866)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.++++++|+.|++|++|+.|+.+++.
T Consensus 136 ~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~ 215 (590)
T TIGR02927 136 TDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDTVDVGAEIAKIGDAGAA 215 (590)
T ss_pred eEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCEecCCCEEEEEecCCCc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999753211
Q ss_pred c-------c---c------cccc---c-----ccc--------cc------------cccccccchhHHHhhhhCCCCcc
Q psy9583 84 L-------S---S------KTEI---K-----NKK--------DI------------KNLNTIVMPSAKKILSDNNLEIS 119 (866)
Q Consensus 84 ~-------~---~------~~~~---~-----~~~--------~~------------~~~~~~~~p~~r~~a~~~~~d~~ 119 (866)
. . + ...+ + ..+ .. +..++.+||+||+||+|+||||+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~ 295 (590)
T TIGR02927 216 AAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDLN 295 (590)
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCHH
Confidence 0 0 0 0000 0 000 00 00134689999999999999999
Q ss_pred cccCCCCCCCceeehhHHhhhhhcccc-ccccc-cc-cCCCc--cccccccC---CCccccccCchhHHHHHHHHHHhcc
Q psy9583 120 KINNGTGKDGRIIKEDVLKVLSSIKNI-NEEKQ-EK-YKPYL--DSISIKNN---SRLEECVPMSRLRLCIAERLLQSQA 191 (866)
Q Consensus 120 ~v~~gtg~~g~i~~~Dv~~~~~~~~~~-~~~~~-~~-~~~~~--~~~~~~~~---~~~~~~~~~~~~r~~ia~~m~~s~~ 191 (866)
.| +|||++|||+++||++|+...... ..+.. .. ..+.. .+...+.. ....+.+||++|||.||++|++||+
T Consensus 296 ~v-~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~S~~ 374 (590)
T TIGR02927 296 SV-KGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTREALQ 374 (590)
T ss_pred HC-CCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHHHhc
Confidence 99 899999999999999997532110 00000 00 00000 00000000 0123568999999999999999999
Q ss_pred ccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeC--CeeEEccceeEEEEEec
Q psy9583 192 NSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDG--NNIIYHKYYDIGIAISS 269 (866)
Q Consensus 192 ~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~--~~~~~~~~~~i~~av~~ 269 (866)
++||||++.++|+|+|+++|+++++.+.+.++.|+||++||+||++.||++||.||++|++ +.|++++++||||||++
T Consensus 375 ~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t 454 (590)
T TIGR02927 375 ASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDT 454 (590)
T ss_pred cCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEEC
Confidence 9999999999999999999999998766666899999999999999999999999999974 47999999999999999
Q ss_pred CCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeE
Q psy9583 270 SRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRV 349 (866)
Q Consensus 270 ~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~ 349 (866)
++||+||||||+|+|||.+|++++++|.+|+|+|+|+++||+||||||||+|++|+++|+|||||||+||||+|++.++|
T Consensus 455 ~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~p 534 (590)
T TIGR02927 455 DAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRP 534 (590)
T ss_pred CCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeC---C--eeEeeeeeeeeecccccccccchhhhhhhhh
Q psy9583 350 IVEN---N--NVVIRPINYFALSYDHRIIDGREAVLSLMSF 385 (866)
Q Consensus 350 ~~~~---~--~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~~ 385 (866)
++.+ | .+++|++|+++|+||||++||+.+++|+...
T Consensus 535 v~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~l 575 (590)
T TIGR02927 535 RVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTI 575 (590)
T ss_pred EEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHH
Confidence 9852 3 4999999999999999999999999888653
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). |
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-77 Score=607.82 Aligned_cols=463 Identities=50% Similarity=0.824 Sum_probs=438.6
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhh-hhhhcCccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKN-SFFEYGINT 467 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~-~~~~~gi~~ 467 (866)
++|||+|||+||+|+.||+++++.|++.+.||++ ..+||+|+|.||+|||.+++.++.++.+.+ .+...|+..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr------~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~v 111 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKR------GTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDV 111 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEecc------CccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccc
Confidence 4699999999999999999999999999999997 799999999999999999999999998887 778899998
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCc
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKAR 545 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~ 545 (866)
....+|+..+....+..++.+...+..++++++|+++.|...+.++ +.+.+...+| ..+.++++||||||.-.
T Consensus 112 s~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p-----~~V~v~k~dg~~~ii~aKnIiiATGSeV~ 186 (506)
T KOG1335|consen 112 SSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDP-----NKVSVKKIDGEDQIIKAKNIIIATGSEVT 186 (506)
T ss_pred cceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCC-----ceEEEeccCCCceEEeeeeEEEEeCCccC
Confidence 8889999999999999999999999999999999999999999998 9999987665 78999999999999766
Q ss_pred CCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 546 SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 546 ~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
.+||...++..+.++..++.+.+.|++++|||+|++|+|++..+.++|.+||+++..+.+.+.+|.++++.+++.|.++|
T Consensus 187 ~~PGI~IDekkIVSStgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQg 266 (506)
T KOG1335|consen 187 PFPGITIDEKKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQG 266 (506)
T ss_pred CCCCeEecCceEEecCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcC
Confidence 67798889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCceEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 626 LNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
+.|++++.|..++.+++ .+.+++++..+. ...+++||.+++++|++|.+..|++++.|++.|.+|++.||..++|.
T Consensus 267 ikF~l~tkv~~a~~~~dg~v~i~ve~ak~~---k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~ 343 (506)
T KOG1335|consen 267 IKFKLGTKVTSATRNGDGPVEIEVENAKTG---KKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTK 343 (506)
T ss_pred ceeEeccEEEEeeccCCCceEEEEEecCCC---ceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccccccc
Confidence 99999999999999877 677777753322 25689999999999999999999999999999999999999999999
Q ss_pred CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCc
Q psy9583 705 IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784 (866)
Q Consensus 705 ~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~ 784 (866)
+|+||++||+..+|+++|.|-.||..+.+.|.+.....+|..+|.+.|+.||++|||+||+|+++.|++|+++++||..+
T Consensus 344 vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~~~hv~ynciP~v~ythPEvawVG~TEeqlkeegi~y~vgkfpF~aN 423 (506)
T KOG1335|consen 344 VPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHVDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSAN 423 (506)
T ss_pred CCceEEecccCCcchhhhhhhhhchhheeeecccCcccccCCCCceeecccceeeeccchhhHHhcCcceEeeecccccc
Confidence 99999999999999999999999999999999988778899999999999999999999999999999999999999999
Q ss_pred hhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhh-hc
Q psy9583 785 SRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIEN-RS 863 (866)
Q Consensus 785 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~-~~ 863 (866)
.|+....+.+||+|+++|+++++|||+||+|++|.|||++.++||..|++.+|++..+|+|||+||++.+|.+.++- +.
T Consensus 424 sRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~~~k~ 503 (506)
T KOG1335|consen 424 SRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYDGKP 503 (506)
T ss_pred chhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCCCcHHHHHHHHHHHhhccCC
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999998864 66
Q ss_pred cC
Q psy9583 864 IN 865 (866)
Q Consensus 864 ~~ 865 (866)
+|
T Consensus 504 Ih 505 (506)
T KOG1335|consen 504 IH 505 (506)
T ss_pred CC
Confidence 65
|
|
| >TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-78 Score=672.33 Aligned_cols=377 Identities=32% Similarity=0.499 Sum_probs=320.7
Q ss_pred EEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCE-EecCCEEEEEecCCcc
Q psy9583 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSI-VTSNQVIALIDTDISK 83 (866)
Q Consensus 5 ~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~-v~~g~~l~~~~~~~~~ 83 (866)
+|+||++|++|+||+|++|++++||.|++||+||+|||||+++|++||.+|+|.++++++|+. |++|++|++|+.+++.
T Consensus 1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~ 80 (435)
T TIGR01349 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED 80 (435)
T ss_pred CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence 378999999999999999999999999999999999999999999999999999999999999 9999999999643211
Q ss_pred cc-------------c--c---c-c-c----cc--cc-----cc----c------ccccccchhHHHhhhhCCCCccccc
Q psy9583 84 LS-------------S--K---T-E-I----KN--KK-----DI----K------NLNTIVMPSAKKILSDNNLEISKIN 122 (866)
Q Consensus 84 ~~-------------~--~---~-~-~----~~--~~-----~~----~------~~~~~~~p~~r~~a~~~~~d~~~v~ 122 (866)
.+ + + . . + .+ .+ .. . ..+.++||+||+||+|+||||+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v- 159 (435)
T TIGR01349 81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAV- 159 (435)
T ss_pred cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHC-
Confidence 00 0 0 0 0 0 00 00 00 0 012458999999999999999999
Q ss_pred CCCCCCCceeehhHHhhhhhccccccccccccCCCccccccccCCCccccccCchhHHHHHHHHHHhccccceEEEEeee
Q psy9583 123 NGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEI 202 (866)
Q Consensus 123 ~gtg~~g~i~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~ 202 (866)
+|||++|||+++||++|+...+.....++....+.....+.+......+.+||++|||.|+++|++|++++||+|++.++
T Consensus 160 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~~ev 239 (435)
T TIGR01349 160 AGSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVSIEC 239 (435)
T ss_pred CCCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEEEEE
Confidence 79999999999999999753111111000000000000000001112456899999999999999999999999999999
Q ss_pred echHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeCCeeEEccceeEEEEEecCCceEEeEEecCC
Q psy9583 203 NMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNAD 282 (866)
Q Consensus 203 d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~ 282 (866)
|+|+|+++|+++++.+.+ +.++|+++||+||+++||++||.||++|+++++++++++||||||++++||++|||||+|
T Consensus 240 d~t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~ 317 (435)
T TIGR01349 240 NVDKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVRNAD 317 (435)
T ss_pred EhHHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCCCcc
Confidence 999999999999876433 789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCe---eEee
Q psy9583 283 TMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNN---VVIR 359 (866)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~---~~ir 359 (866)
+||+.||++++++|.+++|+|+|.++|++||||||||+|++|+.+|+|||||||+||||+|++.++|++.+++ +++|
T Consensus 318 ~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~~~~~~~~i~~~ 397 (435)
T TIGR01349 318 AKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVA 397 (435)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEEeCCccceeEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998777 9999
Q ss_pred eeeeeeecccccccccchhhhhhhh
Q psy9583 360 PINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 360 ~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
++|+++|+||||++||+++++|+..
T Consensus 398 ~~m~lsls~DHRviDGa~aa~Fl~~ 422 (435)
T TIGR01349 398 SIMSVTLSCDHRVIDGAVGAEFLKS 422 (435)
T ss_pred eeEEEeEeecchhhCcHHHHHHHHH
Confidence 9999999999999999999988764
|
This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score. |
| >PLN02528 2-oxoisovalerate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-78 Score=664.08 Aligned_cols=376 Identities=27% Similarity=0.479 Sum_probs=318.0
Q ss_pred EecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCcccc
Q psy9583 6 VKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDISKLS 85 (866)
Q Consensus 6 ~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~~~~ 85 (866)
|+||+||++|+||+|++|+|++||.|++||+|+++||||+.++++||.+|+|.++++++|+.|++|++|+.++.+.+...
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~~~~ 80 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDIVKVGETLLKIMVEDSQHL 80 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCEeCCCCEEEEEeccCCccc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999975432110
Q ss_pred ----c--ccc-c--ccc-c-c---ccccccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhhccccccc--
Q psy9583 86 ----S--KTE-I--KNK-K-D---IKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEE-- 149 (866)
Q Consensus 86 ----~--~~~-~--~~~-~-~---~~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~~~~~~~~-- 149 (866)
+ +.. . .++ + . ......++||++|+||+++||||+.| +|||++|||+++||++|+...+....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v-~gtG~~GrI~~~DV~~~~~~~~~~~~~~~ 159 (416)
T PLN02528 81 RSDSLLLPTDSSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDI-LGTGKDGRVLKEDVLKYAAQKGVVKDSSS 159 (416)
T ss_pred cccCCCCCCCCccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHC-CCCCCCCcEeHHHHHHHhhcccccccccc
Confidence 0 000 0 000 0 0 00112468999999999999999999 899999999999999997532110000
Q ss_pred cccccCCCcc----cccccc-CCCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccC
Q psy9583 150 KQEKYKPYLD----SISIKN-NSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNV 224 (866)
Q Consensus 150 ~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~ 224 (866)
.++...+..+ ..+.+. .....+.+||++|||+||++|++|+ ++||+|++.++|+++|+++|+++++.. +..|.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~~~~-~~~g~ 237 (416)
T PLN02528 160 AEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQENN-TDPTV 237 (416)
T ss_pred cccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHhhhh-hhcCC
Confidence 0000000000 000000 0111356899999999999999997 899999999999999999999998653 33489
Q ss_pred ccCHHHHHHHHHHHHHHhCCccceEEeCC--eeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhc
Q psy9583 225 KLGFMSFFVKAVVSALKQYPIINASVDGN--NIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQD 302 (866)
Q Consensus 225 ~~t~~~~~~ka~~~al~~~P~~n~~~~~~--~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~ 302 (866)
|+||++||+||+++||++||.+|++|+++ .+++++++||||||++++||++||||++|++|+.+|++++++|.+++|+
T Consensus 238 kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~ 317 (416)
T PLN02528 238 KHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAE 317 (416)
T ss_pred cccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999865 7999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEe-CCeeEeeeeeeeeecccccccccchhhhh
Q psy9583 303 NKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVE-NNNVVIRPINYFALSYDHRIIDGREAVLS 381 (866)
Q Consensus 303 ~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~-~~~~~ir~~~~~~l~~dhr~~dg~~a~~~ 381 (866)
|+|+++|++||||||||+|++|+.+|+|||||||+||||+|++.++|++. +|++++|++|+++|+||||++||+++++|
T Consensus 318 gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~F 397 (416)
T PLN02528 318 NKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARF 397 (416)
T ss_pred CCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 58999999999999999999999999988
Q ss_pred hhh
Q psy9583 382 LMS 384 (866)
Q Consensus 382 ~~~ 384 (866)
+..
T Consensus 398 l~~ 400 (416)
T PLN02528 398 CNE 400 (416)
T ss_pred HHH
Confidence 764
|
|
| >COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-78 Score=664.69 Aligned_cols=375 Identities=45% Similarity=0.763 Sum_probs=330.3
Q ss_pred ccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 2 ~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
|+++|+||+||++|+||+|++|+||+||+|++||+|+||||||+++||+||++|+|.+|++++|++|++|++|++|+.++
T Consensus 1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDTVPVGAVIARIEEEG 80 (404)
T ss_pred CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCEEcCCCeEEEEecCC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred cc--ccccc--cc----cccccc-----cccccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhhcccccc
Q psy9583 82 SK--LSSKT--EI----KNKKDI-----KNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINE 148 (866)
Q Consensus 82 ~~--~~~~~--~~----~~~~~~-----~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~~~~~~~ 148 (866)
+. ..+.. ++ ++.++. +.....+||++|++|+|+|+|++.+ .|||++|||+++|+..++.......
T Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v-~gtG~~gri~~~d~~~~~~~~~~~~- 158 (404)
T COG0508 81 ADAPAAAEAPPEPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKV-KGTGPGGRITKKDVEAAVAEKAAAA- 158 (404)
T ss_pred CcccccCcccCCccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHc-CCcCCCCceeccchhhhcccccccc-
Confidence 43 11110 00 000000 1134679999999999999999999 6999999999999999876431100
Q ss_pred ccccccCCCccccccccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCH
Q psy9583 149 EKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGF 228 (866)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~ 228 (866)
. .+..............+++||+++||.|+++|..|++++||+|.+.++|++.++++|++++..+.++ +.|+||
T Consensus 159 ~-----~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr~~~~~~~~~~-g~klt~ 232 (404)
T COG0508 159 A-----APAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEEFEKK-GVKLTF 232 (404)
T ss_pred c-----ccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHHHHhhhhhccc-CccccH
Confidence 0 0000000001123456889999999999999999999999999999999999999999999887755 999999
Q ss_pred HHHHHHHHHHHHHhCCccceEEeCC--eeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCC
Q psy9583 229 MSFFVKAVVSALKQYPIINASVDGN--NIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLL 306 (866)
Q Consensus 229 ~~~~~ka~~~al~~~P~~n~~~~~~--~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~ 306 (866)
++|++||++.||++||.+|++++++ .+++++++|||+||++++||++|||||++++|+.+|++++.+|..++|+|+|.
T Consensus 233 ~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~ 312 (404)
T COG0508 233 LSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLT 312 (404)
T ss_pred HHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcC
Confidence 9999999999999999999999875 89999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 307 PEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 307 ~~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
++|++||||||||+|++|...|+|||||||+|||++|++.++|++.++++++|++|+++++||||++||.++.+|...
T Consensus 313 ~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ 390 (404)
T COG0508 313 PEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVA 390 (404)
T ss_pred HHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEecCceeeEeeEeecccccccccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988999999999999999999999999988764
|
|
| >TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-77 Score=682.50 Aligned_cols=379 Identities=28% Similarity=0.455 Sum_probs=321.9
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
+++|+||++|+ |+||+|++|+|++||.|++||+|++|||||++++|+||++|+|.++++++|+.|++|++|+.++.+++
T Consensus 116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTGDLILTLSVAGS 194 (546)
T ss_pred ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 36899999999 99999999999999999999999999999999999999999999999999999999999999975331
Q ss_pred cc-----c-cc----ccccc-------cc------ccc--------cccc-ccchhHHHhhhhCCCCcccccCCCCCCCc
Q psy9583 83 KL-----S-SK----TEIKN-------KK------DIK--------NLNT-IVMPSAKKILSDNNLEISKINNGTGKDGR 130 (866)
Q Consensus 83 ~~-----~-~~----~~~~~-------~~------~~~--------~~~~-~~~p~~r~~a~~~~~d~~~v~~gtg~~g~ 130 (866)
.. . ++ ..+++ .+ ... ..+. ++||+||+||+|+||||+.| .||||+||
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v-~gtG~~Gr 273 (546)
T TIGR01348 195 TPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAV-KGTGIKGR 273 (546)
T ss_pred CcccccCcccccccCCCCccccccccCCCCCCCccCcccccccccccccccCCCHHHHHHHHHcCCCHhhC-CCCCCCCe
Confidence 10 0 00 00000 00 000 0122 58999999999999999999 89999999
Q ss_pred eeehhHHhhhhhccc-cccccccccCC--Ccccccccc--CCCccccccCchhHHHHHHHHHHhccccceEEEEeeeech
Q psy9583 131 IIKEDVLKVLSSIKN-INEEKQEKYKP--YLDSISIKN--NSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQ 205 (866)
Q Consensus 131 i~~~Dv~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t 205 (866)
|+++||++|+..... .+..+.+...+ .....+... ....++.+||++|||.||++|++|++++||||++.++|+|
T Consensus 274 I~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt 353 (546)
T TIGR01348 274 ILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADIT 353 (546)
T ss_pred EeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcH
Confidence 999999999743211 11000000000 000000000 0012356899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeC--CeeEEccceeEEEEEecCCceEEeEEecCCC
Q psy9583 206 SIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDG--NNIIYHKYYDIGIAISSSRGLVVPILRNADT 283 (866)
Q Consensus 206 ~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~--~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~ 283 (866)
+|+++|+++++.+.+ .|.|+||++||+||+++||++||.+|++|++ +.+++++++||||||++++||+||||||+|+
T Consensus 354 ~l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~ 432 (546)
T TIGR01348 354 EMEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDR 432 (546)
T ss_pred HHHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCccc
Confidence 999999999976554 4899999999999999999999999999984 5799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeee
Q psy9583 284 MSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINY 363 (866)
Q Consensus 284 ~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~ 363 (866)
||+.+|++++++|.+++|+|+|+++||+||||||||+||+|+.+|+|||||||+|||++|++.++|++.++++++|++|+
T Consensus 433 ~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~ 512 (546)
T TIGR01348 433 KGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLP 512 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred eeecccccccccchhhhhhhh
Q psy9583 364 FALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 364 ~~l~~dhr~~dg~~a~~~~~~ 384 (866)
++|+||||++||.++++|+..
T Consensus 513 ltls~DHRviDGa~aa~Fl~~ 533 (546)
T TIGR01348 513 LSLSYDHRVIDGADAARFTTY 533 (546)
T ss_pred EeEeccchhcChHHHHHHHHH
Confidence 999999999999999988764
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-72 Score=643.45 Aligned_cols=462 Identities=38% Similarity=0.652 Sum_probs=418.6
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|+.+|||+||||||||+.||.+|++.|++|+|||+. +.+||+|+|.||+|+|.++..+..++.... +..+|+.
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~------~~~GG~c~n~gciP~K~l~~~a~~~~~~~~-~~~~g~~ 73 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERY------STLGGVCLNVGCIPSKALLHVAKVIEEAKA-LAEHGIV 73 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecC------CcccccccCCCcccHHHHHHHHHHHHHHhh-hhhcCcc
Confidence 455799999999999999999999999999999986 579999999999999999998888877654 6677887
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKA 544 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p 544 (866)
.....++|..+..+.+..++++...+..++++.||+++.+++.+.+. +++.+...++ .++.||+||||||++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~-----~~v~v~~~~g~~~~~~~d~lViATGs~p 148 (471)
T PRK06467 74 FGEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGG-----NTLEVTGEDGKTTVIEFDNAIIAAGSRP 148 (471)
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC-----CEEEEecCCCceEEEEcCEEEEeCCCCC
Confidence 76678899999999999999888888889999999999999998876 7888876555 5799999999999999
Q ss_pred cCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHc
Q psy9583 545 RSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~ 624 (866)
+.+|+.+.....++++.+.+.+...+++++|||||++|+|+|..|.++|.+|+++++.+++++.+|+++...+++.|+++
T Consensus 149 ~~~p~~~~~~~~v~~~~~~~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~ 228 (471)
T PRK06467 149 IQLPFIPHDDPRIWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ 228 (471)
T ss_pred CCCCCCCCCCCcEEChHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc
Confidence 86666554556688888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
+++++++.+++++.+++++.+.+...++. ..++++|.|++|+|++||++++.++.+|++++++|+|.||++|||+
T Consensus 229 -v~i~~~~~v~~i~~~~~~~~v~~~~~~~~----~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~ 303 (471)
T PRK06467 229 -FNIMLETKVTAVEAKEDGIYVTMEGKKAP----AEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTN 303 (471)
T ss_pred -eEEEcCCEEEEEEEcCCEEEEEEEeCCCc----ceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccC
Confidence 99999999999987766766666533231 2479999999999999999987788899999999999999999999
Q ss_pred CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCc
Q psy9583 705 IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784 (866)
Q Consensus 705 ~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~ 784 (866)
+|+|||+|||++.+++++.|.+||++||+||++....+++...|+++|++|+++++|+||+||++.|+++.+..+++...
T Consensus 304 ~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~ea~~~g~~~~~~~~~~~~~ 383 (471)
T PRK06467 304 VPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAAS 383 (471)
T ss_pred CCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceeEEECCHHHHHhcCCCeEEEEEecCcc
Confidence 99999999999989999999999999999999987778888999999999999999999999999999999999999988
Q ss_pred hhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhcc
Q psy9583 785 SRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864 (866)
Q Consensus 785 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~ 864 (866)
+++.+.+++.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++...++.+
T Consensus 384 ~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~~~~~ 463 (471)
T PRK06467 384 GRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAFEGSIT 463 (471)
T ss_pred hhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHhhcCCcc
Confidence 89888888899999999999999999999999999999999999999999999999999999999999999987766544
Q ss_pred C
Q psy9583 865 N 865 (866)
Q Consensus 865 ~ 865 (866)
|
T Consensus 464 ~ 464 (471)
T PRK06467 464 D 464 (471)
T ss_pred c
Confidence 3
|
|
| >PLN02226 2-oxoglutarate dehydrogenase E2 component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-74 Score=627.89 Aligned_cols=357 Identities=43% Similarity=0.700 Sum_probs=294.4
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCcc
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDISK 83 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~~ 83 (866)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|.++++++||.|++|++|++|+.+++.
T Consensus 92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~~~~ 171 (463)
T PLN02226 92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDTVEPGTKVAIISKSEDA 171 (463)
T ss_pred eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCEecCCCEEEEeccCCcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999754322
Q ss_pred ccccccccccccccccccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhhccccccccccccCCCcccccc
Q psy9583 84 LSSKTEIKNKKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISI 163 (866)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (866)
.+........+..... ....+..|++ +++++++.+ .- . ........ .+. .+...+ +.
T Consensus 172 ~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~v~asp~-~r---~-----------~~~~~~~~---~~~-~~~~~~-~~ 228 (463)
T PLN02226 172 ASQVTPSQKIPETTDP-KPSPPAEDKQ--KPKVESAPV-AE---K-----------PKAPSSPP---PPK-QSAKEP-QL 228 (463)
T ss_pred ccccCccCCCCCCCCC-CCCCcccccc--ccCCCcchh-hc---c-----------ccCCCCCC---CCc-ccccCc-cc
Confidence 1110000000000000 0001111222 445665554 10 0 00000000 000 000000 00
Q ss_pred ccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhC
Q psy9583 164 KNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQY 243 (866)
Q Consensus 164 ~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~ 243 (866)
......+.+||++|||+||++|++||+++||||++.|+|+|+|+++|+++++.+.++.|.|+|+++||+||+++||++|
T Consensus 229 -~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~ 307 (463)
T PLN02226 229 -PPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQ 307 (463)
T ss_pred -ccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhC
Confidence 0011235689999999999999999999999999999999999999999998776667899999999999999999999
Q ss_pred CccceEEeCCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCc
Q psy9583 244 PIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVF 323 (866)
Q Consensus 244 P~~n~~~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~ 323 (866)
|++|++|+++.+++++++||||||++++||+||||||+|++|+.||++++++|++++|+|+|+++|++||||||||+|++
T Consensus 308 P~lNa~~~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~ 387 (463)
T PLN02226 308 PVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVY 387 (463)
T ss_pred CHhheEEcCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 324 GSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 324 g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|+++|||||||||+||||+|++.++|++.+|++++|++|+++|+||||++||+++++|+..
T Consensus 388 Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~ 448 (463)
T PLN02226 388 GSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRR 448 (463)
T ss_pred cccceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988764
|
|
| >PTZ00144 dihydrolipoamide succinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-74 Score=622.11 Aligned_cols=356 Identities=45% Similarity=0.727 Sum_probs=301.9
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
+++|+||+||++|+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|++|++|+.|+..++
T Consensus 44 i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~~~ 123 (418)
T PTZ00144 44 IKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGA 123 (418)
T ss_pred ceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCEecCCCEEEEEcCCCc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999976543
Q ss_pred cccccc--ccc-ccc-cccccccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhhccccccccccccCCCc
Q psy9583 83 KLSSKT--EIK-NKK-DIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYL 158 (866)
Q Consensus 83 ~~~~~~--~~~-~~~-~~~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~~~~~~~~~~~~~~~~~ 158 (866)
...++. +.+ .++ +.+.......|.+++++.+.++++..+ ... .. .+.+ + ..+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~~~~~a~p~v-r~~---------------~~---~~~~-~--~~~~- 180 (418)
T PTZ00144 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAA-KPP---------------EP---APAA-K--PPPT- 180 (418)
T ss_pred cccccccccCCCCCccCCCCCCCCCCCccccccccccCCchhh-hcc---------------cc---CCCC-C--CCCC-
Confidence 211100 000 000 000111123477777777777766655 210 00 0000 0 0000
Q ss_pred cccccccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHH
Q psy9583 159 DSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVS 238 (866)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~ 238 (866)
+.+. .....+.+|+++|||+||++|++|++++||+|++.++|+|+|+++|+++++.+.++.|.|+|+++||+||+++
T Consensus 181 -~~~~--~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r~~~~~~~~~~~g~klS~~~~liKAva~ 257 (418)
T PTZ00144 181 -PVAR--ADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKEYKDDFQKKHGVKLGFMSAFVKASTI 257 (418)
T ss_pred -Cccc--cCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHH
Confidence 0000 0011345899999999999999999999999999999999999999999987766668999999999999999
Q ss_pred HHHhCCccceEEeCCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEE
Q psy9583 239 ALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTIS 318 (866)
Q Consensus 239 al~~~P~~n~~~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tis 318 (866)
||++||.+|++|+++++++++++||||||++++||+|||||++|++|+.||++++++|++++|+|+|.++|++|||||||
T Consensus 258 AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTIS 337 (418)
T PTZ00144 258 ALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTIS 337 (418)
T ss_pred HHHhChHhheEEcCCEEEEecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 319 NGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 319 n~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|+|++|+++|||||||||+||||+|++.++|++.+|++++|++|+++|+||||++||+++++|+..
T Consensus 338 NlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRviDGa~AA~FL~~ 403 (418)
T PTZ00144 338 NGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKK 403 (418)
T ss_pred CCCCCCcceeeeeecCCceEEEecccceeEeEEECCEEEEEeEEEEEEecchhhhChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988764
|
|
| >KOG0557|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-74 Score=604.17 Aligned_cols=379 Identities=33% Similarity=0.485 Sum_probs=324.1
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCC-CEEecCCEEEEEecCC
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDG-SIVTSNQVIALIDTDI 81 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g-~~v~~g~~l~~~~~~~ 81 (866)
..+|.||.|+++|+||+|++|.++|||.+++||+||||||||++++++++++|+|.||++++| ..|+||.+||++.+++
T Consensus 38 h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiive~e 117 (470)
T KOG0557|consen 38 HKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIVEDE 117 (470)
T ss_pred ceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEeccc
Confidence 467999999999999999999999999999999999999999999999999999999999999 6899999999997654
Q ss_pred cccc---------c---------cccccc-----cc-----------ccc---ccccccchhHHHhhhhCCCCcccccCC
Q psy9583 82 SKLS---------S---------KTEIKN-----KK-----------DIK---NLNTIVMPSAKKILSDNNLEISKINNG 124 (866)
Q Consensus 82 ~~~~---------~---------~~~~~~-----~~-----------~~~---~~~~~~~p~~r~~a~~~~~d~~~v~~g 124 (866)
+..+ + ++++++ ++ +.+ +.++.+||.||+||.++++|++.| .|
T Consensus 118 ~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i-~g 196 (470)
T KOG0557|consen 118 DDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI-PG 196 (470)
T ss_pred ccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC-cC
Confidence 3210 0 000000 00 001 125678999999999999999999 89
Q ss_pred CCCCCceeehhHHhhhhhccccccccccccCCCccccccccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeec
Q psy9583 125 TGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINM 204 (866)
Q Consensus 125 tg~~g~i~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~ 204 (866)
|||+|||++.||++|++..+.....++.+..+...++.........+.+|++.||+.|+++|.+|++++||+|+..++++
T Consensus 197 tGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viakrl~eSk~~IPh~yvt~~~~~ 276 (470)
T KOG0557|consen 197 TGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAKRLLESKQTIPHYYVTVDVNL 276 (470)
T ss_pred cCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhhhhhhhhcCCCeEEEeeeeeh
Confidence 99999999999999987533211111111111101101111122378999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeC-CeeEEccceeEEEEEecCCceEEeEEecCCC
Q psy9583 205 QSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDG-NNIIYHKYYDIGIAISSSRGLVVPILRNADT 283 (866)
Q Consensus 205 t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~-~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~ 283 (866)
+.++++|++++ + .+.+.++|+++||+||++.||+++|++|++|.+ +.|.++++|||++||++++||++|+|+|++.
T Consensus 277 d~ll~~r~~ln--~-~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~VdisvAVat~~GLitPii~na~~ 353 (470)
T KOG0557|consen 277 DKLLALREKLN--F-EKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDISVAVATPNGLITPIIQNADA 353 (470)
T ss_pred HHHHHHHHHhh--h-cccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCChhheeeccCcccchhhhhccc
Confidence 99999999998 2 345789999999999999999999999999988 7899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEE---eCCeeEeee
Q psy9583 284 MSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIV---ENNNVVIRP 360 (866)
Q Consensus 284 ~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~---~~~~~~ir~ 360 (866)
+.+.+|.+++.+|..++|.++|.|+|++||||||||+||||++.|+.||||||.|||++|+.....+. .++++....
T Consensus 354 kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~ 433 (470)
T KOG0557|consen 354 KGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVIN 433 (470)
T ss_pred ccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCccccccCCCcccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999988774 346788899
Q ss_pred eeeeeecccccccccchhhhhhhhh
Q psy9583 361 INYFALSYDHRIIDGREAVLSLMSF 385 (866)
Q Consensus 361 ~~~~~l~~dhr~~dg~~a~~~~~~~ 385 (866)
.|.+++++|||++||+.+++|+..+
T Consensus 434 ~m~VTls~DhRvvdga~aa~Fl~~f 458 (470)
T KOG0557|consen 434 AMTVTLSADHRVVDGAVAARFLDEF 458 (470)
T ss_pred eeEEEEecCcceecHHHHHHHHHHH
Confidence 9999999999999999999988765
|
|
| >PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-73 Score=657.96 Aligned_cols=379 Identities=27% Similarity=0.424 Sum_probs=320.4
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
+++|+||+|| |+||+|++|+|++||.|++||+|++|||||++++|+||++|+|.++++++|+.|++|++|+.++.+++
T Consensus 206 ~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~v~~G~~l~~i~~~~~ 283 (633)
T PRK11854 206 VKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDKVKTGSLIMRFEVEGA 283 (633)
T ss_pred ceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 4789999999 99999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred cc---c----cccc-c---c---cc-cc-----c------cccccccchhHHHhhhhCCCCcccccCCCCCCCceeehhH
Q psy9583 83 KL---S----SKTE-I---K---NK-KD-----I------KNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDV 136 (866)
Q Consensus 83 ~~---~----~~~~-~---~---~~-~~-----~------~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv 136 (866)
.. + ++.+ + . +. .+ . ...+.++||+||+||+++||||+.| +||||+|||+++||
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v-~gtG~~GrI~~~DV 362 (633)
T PRK11854 284 APAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKV-KGTGRKGRILKEDV 362 (633)
T ss_pred CccccccccCCCCCCccccccCCCCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhc-CCCCCCCeEeHHHH
Confidence 11 0 0000 0 0 00 00 0 0112458999999999999999999 89999999999999
Q ss_pred Hhhhhhccccccccccc-cCC----CccccccccC--CCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHH
Q psy9583 137 LKVLSSIKNINEEKQEK-YKP----YLDSISIKNN--SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIID 209 (866)
Q Consensus 137 ~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~--~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~ 209 (866)
++|+..........+.. +.+ .....+..+. ....+.+||++|||.||++|++||+++||++++.++|+|+|++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~~ 442 (633)
T PRK11854 363 QAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELEA 442 (633)
T ss_pred HHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHHH
Confidence 99975321100000000 000 0000000000 0123568999999999999999999999999999999999999
Q ss_pred HHHHhhhHHH-hhccCccCHHHHHHHHHHHHHHhCCccceEEe--CCeeEEccceeEEEEEecCCceEEeEEecCCCCCH
Q psy9583 210 LRLKYKDKFE-KEHNVKLGFMSFFVKAVVSALKQYPIINASVD--GNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSI 286 (866)
Q Consensus 210 ~r~~~~~~~~-~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~--~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~ 286 (866)
+|+++++... ++.|.++|+++||+||+++||++||+||++|+ ++++++++++||||||++++||++||||+++++|+
T Consensus 443 ~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~~sl 522 (633)
T PRK11854 443 FRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGI 522 (633)
T ss_pred HHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCccCCH
Confidence 9999885432 34589999999999999999999999999996 56899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeee
Q psy9583 287 ADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFAL 366 (866)
Q Consensus 287 ~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l 366 (866)
.+|+++++++.+++|+|+|.++|++||||||||+||+|+++|+|||||||+|||++|++.++|++.++.+++|++|+++|
T Consensus 523 ~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~~~~~r~~m~lsl 602 (633)
T PRK11854 523 IELSRELMDISKKARDGKLTAGDMQGGCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSL 602 (633)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECCEEEEEEEEEEeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred cccccccccchhhhhhhh
Q psy9583 367 SYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 367 ~~dhr~~dg~~a~~~~~~ 384 (866)
+||||++||.++++|+..
T Consensus 603 t~DHRviDGa~aa~Fl~~ 620 (633)
T PRK11854 603 SYDHRVIDGADGARFITI 620 (633)
T ss_pred EccchhcchHHHHHHHHH
Confidence 999999999999988764
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-71 Score=629.40 Aligned_cols=456 Identities=44% Similarity=0.774 Sum_probs=408.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhh-hhhhcCcccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKN-SFFEYGINTQ 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~-~~~~~gi~~~ 468 (866)
+|||+||||||||++||.++++.|++|+|||+. ..+||+|+|.||+|+|.++.....++.... ....+|+..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~------~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~- 75 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR------STLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV- 75 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC------CceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccc-
Confidence 499999999999999999999999999999975 579999999999999999998888765543 245667754
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARS 546 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~ 546 (866)
....+|.++..+.+..+..+...+..++++.+|+++.|+..+.+. +++.+...++ ..+.||+||||||++|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~-----~~v~v~~~~g~~~~~~~d~lVIATGs~p~~ 150 (466)
T PRK06115 76 KPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGV-----GKVVVKAEDGSETQLEAKDIVIATGSEPTP 150 (466)
T ss_pred cCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC-----CEEEEEcCCCceEEEEeCEEEEeCCCCCCC
Confidence 357899999999999998888888889999999999999877765 6777765444 479999999999999987
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
+|+...++..++++.+++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++...+++.|++.||
T Consensus 151 ipg~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV 230 (466)
T PRK06115 151 LPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGM 230 (466)
T ss_pred CCCCCCCCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCC
Confidence 77765566678888888877778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeC-CCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
++++++++++++.+++++.+.+... +|. ...+++|.|++|+|++||++.+.++..+++++++| +.||+++||++
T Consensus 231 ~i~~~~~V~~i~~~~~~v~v~~~~~~~g~----~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~~~~Ts~ 305 (466)
T PRK06115 231 KFKLGSKVTGATAGADGVSLTLEPAAGGA----AETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLANDHHRTSV 305 (466)
T ss_pred EEEECcEEEEEEEcCCeEEEEEEEcCCCc----eeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECCCeecCC
Confidence 9999999999987666666655421 221 24799999999999999999877888899998777 78999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCch
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS 785 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~ 785 (866)
|+|||+|||++.+++++.|.+||++||+||++.....++..+|+++|++|++++||+||+||++.|+++.+..+++....
T Consensus 306 ~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~t~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~ 385 (466)
T PRK06115 306 PGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKAGEVNYGLIPGVIYTRPEVATVGKTEEQLKAEGRAYKVGKFPFTANS 385 (466)
T ss_pred CCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCcccEEeeCCHHHHHHCCCCEEEEEEecccCh
Confidence 99999999999999999999999999999998766678889999999999999999999999999999999999999999
Q ss_pred hhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhh
Q psy9583 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENR 862 (866)
Q Consensus 786 ~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~ 862 (866)
++.+.+++.||+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++|+|||++|.+.++++.+.+.
T Consensus 386 ~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hPt~~e~~~~a~~~~~~~ 462 (466)
T PRK06115 386 RAKINHETEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAMNVEGW 462 (466)
T ss_pred hhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCCChHHHHHHHHHHHhcc
Confidence 99988888999999999999999999999999999999999999999999999999999999999999999887654
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-70 Score=623.14 Aligned_cols=453 Identities=31% Similarity=0.529 Sum_probs=407.4
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|+.+|||+||||||||++||.+|+++|++|+|||+. .+||+|.|.||+|+|.++..++..+.... ...+|+.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-------~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~ 73 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-------LLGGTCVNTGCVPTKTLIASARAAHLARR-AAEYGVS 73 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-------ccCCceeccccCcHHHHHHHHHHHHHHHH-HHhcCcc
Confidence 555799999999999999999999999999999984 79999999999999999999988877665 5567776
Q ss_pred cc-ccccCHHHHHHHHHHHHHhhhhhHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 467 TQ-NVTLNLQKMLERKNNIIKKNNSGILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
.. ...++|..+..+.+....++...+..++++. ||+++.++.++.+. +++.+ ++.++.||+||||||+.|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~-----~~v~v---~~~~~~~d~lViATGs~p 145 (463)
T PRK06370 74 VGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESP-----NTVRV---GGETLRAKRIFINTGARA 145 (463)
T ss_pred cCccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccC-----CEEEE---CcEEEEeCEEEEcCCCCC
Confidence 43 3578999999999988888777788888887 99999999988765 67777 356799999999999999
Q ss_pred cCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHc
Q psy9583 545 RSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~ 624 (866)
+.|+.++.+...++++.+.+.....+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|++.
T Consensus 146 ~~p~i~G~~~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~ 225 (463)
T PRK06370 146 AIPPIPGLDEVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILERE 225 (463)
T ss_pred CCCCCCCCCcCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhC
Confidence 98776666666788888888777789999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
||++++++++.+++.++++..+.+...++ ..++++|.|++|+|++||++.|.+++.|++++++|+|.||++|||+
T Consensus 226 GV~i~~~~~V~~i~~~~~~~~v~~~~~~~-----~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~ 300 (463)
T PRK06370 226 GIDVRLNAECIRVERDGDGIAVGLDCNGG-----APEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTT 300 (463)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEEEeCCC-----ceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCC
Confidence 99999999999998876665555542222 1379999999999999999966678889999999999999999999
Q ss_pred CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC-CCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCC
Q psy9583 705 IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ-KHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLA 783 (866)
Q Consensus 705 ~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~ 783 (866)
+|+|||+|||++.+++.+.|.+||++||+||++. ...+++..+|+++|++|+++++|+||+||++.|+++.+..+++..
T Consensus 301 ~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~ 380 (463)
T PRK06370 301 NPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDGGRRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTR 380 (463)
T ss_pred CCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCCCcccccCCeEEEcCCCcEeeeCCHHHHHHcCCCeEEEEEecCc
Confidence 9999999999999999999999999999999985 556777889999999999999999999999999999999999999
Q ss_pred chhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhh
Q psy9583 784 NSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860 (866)
Q Consensus 784 ~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~ 860 (866)
+.++.+.+++.||+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++|+|||++|.+.++++...
T Consensus 381 ~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~ 457 (463)
T PRK06370 381 VGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVSELIPTLAQALR 457 (463)
T ss_pred chhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChHHHHHHHHHhhh
Confidence 99998888889999999999999999999999999999999999999999999999999999999999999998764
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-69 Score=620.84 Aligned_cols=459 Identities=37% Similarity=0.616 Sum_probs=407.0
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
.+|||+||||||||++||.+|++.|++|+|||++ .+||+|.+.||+|+|.++...+..+.+......+|+. .
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-------~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~-~ 74 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-------YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGIS-G 74 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-------CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCC-c
Confidence 3599999999999999999999999999999984 7999999999999999998877777665545567776 3
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARS 546 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~ 546 (866)
...++|..+..+.+.+++.+...+...++..+|+.+.+...+.+. +++.+...++ .++.||+||||||+.|+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~-----~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 149 (466)
T PRK07818 75 EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDA-----NTLEVDLNDGGTETVTFDNAIIATGSSTRL 149 (466)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCC-----CEEEEEecCCCeeEEEcCEEEEeCCCCCCC
Confidence 457899999999998888887777778888899999999988876 7888865443 579999999999999987
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
+|+.+.. ..++++++.......+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++...+++.|+++||
T Consensus 150 ~pg~~~~-~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV 228 (466)
T PRK07818 150 LPGTSLS-ENVVTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGV 228 (466)
T ss_pred CCCCCCC-CcEEchHHHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCC
Confidence 7775432 246777765555567899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIP 706 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~ 706 (866)
+++++++|++++.+++.+.+.+...+|. ..++++|.|++|+|++||++.+.+++.|++++++|+|.||+++||++|
T Consensus 229 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~----~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p 304 (466)
T PRK07818 229 KILTGTKVESIDDNGSKVTVTVSKKDGK----AQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVP 304 (466)
T ss_pred EEEECCEEEEEEEeCCeEEEEEEecCCC----eEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCC
Confidence 9999999999987666665555422342 247999999999999999998778899999988899999999999999
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCC-CC-CCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCc
Q psy9583 707 NIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKH-SI-NFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784 (866)
Q Consensus 707 ~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~-~~-~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~ 784 (866)
+|||+|||++.+++++.|..||++||+||++... .+ ++..+|+++|++|+++++|+||+||++.|+++.+..+++..+
T Consensus 305 ~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~ 384 (466)
T PRK07818 305 HIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAETLELGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTAN 384 (466)
T ss_pred CEEEEeecCCCcccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeEEECCCCeEEEeCCHHHHHhCCCcEEEEEEECCcc
Confidence 9999999999899999999999999999998653 34 678899999999999999999999999999999999999999
Q ss_pred hhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhcc
Q psy9583 785 SRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864 (866)
Q Consensus 785 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~ 864 (866)
+|+.+.+++.||+|+++|+++++|||+|++|++++|+|+.+++||++++|++||++++|+|||++|.+.++++.+.++.+
T Consensus 385 ~~~~~~~~~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~ 464 (466)
T PRK07818 385 GKAHGLGDPTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALKEAFHGLAGHMI 464 (466)
T ss_pred chhhhcCCCCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCCCchHHHHHHHHHHhhcCcc
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999998876645
Q ss_pred C
Q psy9583 865 N 865 (866)
Q Consensus 865 ~ 865 (866)
|
T Consensus 465 ~ 465 (466)
T PRK07818 465 N 465 (466)
T ss_pred c
Confidence 4
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-69 Score=620.34 Aligned_cols=474 Identities=57% Similarity=0.950 Sum_probs=419.4
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|.+.||++||||||||++||.++++.|.+|+|||+...+.....+||+|.|.||+|+|.++..++....+.+.+..+|+.
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIH 80 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCcc
Confidence 44569999999999999999999999999999998222223357999999999999999999988887776655677887
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.....++|.++..+.+.+++.+...+..+++..+|+++.+++.+++.. ...+++.+...++.+++||+||||||+.|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~v~v~~~~~~~~~~d~lViATGs~p~~ 159 (475)
T PRK06327 81 VDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKT-DAGYEIKVTGEDETVITAKHVIIATGSEPRH 159 (475)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCC-CCCCEEEEecCCCeEEEeCEEEEeCCCCCCC
Confidence 666678999999999999998888888999999999999999887631 1236677754445689999999999999987
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
+|+.+.....++++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++...+.+.|+++||
T Consensus 160 ~p~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi 239 (475)
T PRK06327 160 LPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGL 239 (475)
T ss_pred CCCCCCCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCc
Confidence 77766566678888888877778899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIP 706 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~ 706 (866)
+++++++|++++.+++++.+.+.+.+|. ...+++|.+++|+|++|+++.+.++.++++++++|+|.||+++||++|
T Consensus 240 ~i~~~~~v~~i~~~~~~v~v~~~~~~g~----~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~Ts~~ 315 (475)
T PRK06327 240 DIHLGVKIGEIKTGGKGVSVAYTDADGE----AQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVP 315 (475)
T ss_pred EEEeCcEEEEEEEcCCEEEEEEEeCCCc----eeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCCccCCC
Confidence 9999999999988776666666533332 347999999999999999997767888999999999999999999999
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchh
Q psy9583 707 NIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSR 786 (866)
Q Consensus 707 ~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~ 786 (866)
+|||+|||++.+++++.|..||++||+||++....+++..+|+++|++|+++++|+||++|++.|+++.+..+++....+
T Consensus 316 ~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~pe~a~vGlte~~a~~~g~~~~~~~~~~~~~~~ 395 (475)
T PRK06327 316 NVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGR 395 (475)
T ss_pred CEEEEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEeCCcceEEEeCCHHHHHHcCCCEEEEEEcccccch
Confidence 99999999998999999999999999999987766678889999999999999999999999999999999999999999
Q ss_pred hhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccC
Q psy9583 787 ARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865 (866)
Q Consensus 787 ~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 865 (866)
+.+.+++.||+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++|+|||++|.+.++++.+.++.++
T Consensus 396 ~~~~~~~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~ 474 (475)
T PRK06327 396 ALAMGEPDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAALAVDKRPLH 474 (475)
T ss_pred hhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCCcCCCChHHHHHHHHHHhccCccc
Confidence 9988888999999999999999999999999999999999999999999999999999999999999999876554443
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-69 Score=615.75 Aligned_cols=444 Identities=26% Similarity=0.461 Sum_probs=396.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+||++||||||+|..||.+ +.|.+|+|||++ .+||+|+|+||+|+|.++..++..+...+ ...+|+....
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-------~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~ 70 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-------TFGGTCLNVGCIPTKMFVYAADVARTIRE-AARLGVDAEL 70 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-------CCCCcccCcCcchhHHHHHHHHHHHHHHH-HHhCCccCCC
Confidence 3899999999999998876 469999999984 79999999999999999999998887765 5667886555
Q ss_pred cccCHHHHHHHHHHHHHhhhhh-HHHH-HHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSG-ILFL-FKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
..++|.++..+.+..++++... ...+ +++.+|+++.|++.+.+. +++++. +++.+.||+||||||++|+.|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~-----~~V~v~--~g~~~~~d~lViATGs~p~~p 143 (451)
T PRK07846 71 DGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGP-----KTLRTG--DGEEITADQVVIAAGSRPVIP 143 (451)
T ss_pred CcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecC-----CEEEEC--CCCEEEeCEEEEcCCCCCCCC
Confidence 6789999999999888887553 5555 788999999999999866 778773 456899999999999999887
Q ss_pred CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCE
Q psy9583 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~ 627 (866)
+.++.....+++++++..+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.+ +.||+
T Consensus 144 ~i~g~~~~~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~ 222 (451)
T PRK07846 144 PVIADSGVRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWD 222 (451)
T ss_pred CCCCcCCccEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeE
Confidence 76665555678888888877789999999999999999999999999999999999999999999998887655 56899
Q ss_pred EEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCC
Q psy9583 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707 (866)
Q Consensus 628 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~ 707 (866)
+++++++++++.+++++.+.+. +|. ++++|.|++|+|++||++++.+++.+++++++|+|.||+++||++||
T Consensus 223 i~~~~~v~~i~~~~~~v~v~~~--~g~------~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~ 294 (451)
T PRK07846 223 VRLGRNVVGVSQDGSGVTLRLD--DGS------TVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEG 294 (451)
T ss_pred EEeCCEEEEEEEcCCEEEEEEC--CCc------EeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCC
Confidence 9999999999877666655553 554 79999999999999999998778899999989999999999999999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCCC--CCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCch
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK--HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS 785 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~ 785 (866)
|||+|||++.+++++.|.+||+++++||++.. ...++..+|+++|++|+++++|+||+||++.|+++.+..+++....
T Consensus 295 IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~if~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~ 374 (451)
T PRK07846 295 VFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHRFVPAAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVA 374 (451)
T ss_pred EEEEeecCCCccChhHHHHHHHHHHHHHcCCCCccccCCCCCCeEEECCCCcEeEeCCHHHHHhcCCCEEEEEEecCcch
Confidence 99999999999999999999999999999752 3467788999999999999999999999999999999999999999
Q ss_pred hhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHcccc-ccCCChhHHHHHHHHHh
Q psy9583 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARIC-HVHPSLSEAMKEAAMSI 859 (866)
Q Consensus 786 ~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~-~~~Pt~~e~~~~~~~~~ 859 (866)
++.+.+++.||+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.++. ++|||++|++.++++.+
T Consensus 375 ~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~ 449 (451)
T PRK07846 375 YGWAMEDTTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPEVVENALLGL 449 (451)
T ss_pred hhhhCCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHHHHHHHHHhc
Confidence 988888889999999999999999999999999999999999999999999999875 79999999999988653
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-69 Score=614.43 Aligned_cols=442 Identities=27% Similarity=0.437 Sum_probs=398.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+||||||||++||.+++++|++|+|||+. .+||+|.+.||+|+|.++..++..+.+.+ ...+|+....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-------~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~ 73 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-------RVGGTCVIRGCVPKKLMVYGSTFGGEFED-AAGYGWTVGK 73 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-------ccCceeecCCcCchHHHHHHHHHHHHHhh-hHhcCcCCCC
Confidence 599999999999999999999999999999984 79999999999999999999988877765 5677877666
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
..++|.++..+.++.+..+...+...+++.+|+++.+++.+++. +++.+.. ++..+.||+||||||++|..|+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~-----~~v~v~~-~g~~~~~d~lIiATGs~p~~p~i 147 (446)
T TIGR01424 74 ARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGP-----NTVEVLQ-DGTTYTAKKILIAVGGRPQKPNL 147 (446)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecC-----CEEEEec-CCeEEEcCEEEEecCCcCCCCCC
Confidence 68899999999999999998888899999999999998888776 5666653 45689999999999999987655
Q ss_pred CcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEE
Q psy9583 550 VKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629 (866)
Q Consensus 550 ~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~ 629 (866)
++.+ ..+++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+.+++.+++++...+.+.|++.||+++
T Consensus 148 ~G~~--~~~~~~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~ 225 (446)
T TIGR01424 148 PGHE--LGITSNEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIH 225 (446)
T ss_pred CCcc--ceechHHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEE
Confidence 4422 34677777777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEE
Q psy9583 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIY 709 (866)
Q Consensus 630 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~Vy 709 (866)
+++.+.++..+++++.+.+. ++. ++++|.|++|+|++||++.+.++..+++++++|+|.||+++||++||||
T Consensus 226 ~~~~v~~i~~~~~~~~v~~~--~g~------~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~Iy 297 (446)
T TIGR01424 226 PQTSLTSITKTDDGLKVTLS--HGE------EIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIY 297 (446)
T ss_pred eCCEEEEEEEcCCeEEEEEc--CCc------EeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEE
Confidence 99999999876666655553 554 7999999999999999998778899999998999999999999999999
Q ss_pred EecccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhcC-CcEEEEEEecCCchhh
Q psy9583 710 AIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKHN-ISYNVGIFPFLANSRA 787 (866)
Q Consensus 710 A~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~-~~~~~~~~~~~~~~~~ 787 (866)
|+|||++.+++++.|.+||++||+||++.. .++++..+|+++|+.|+++++|+||+||++.+ +++.+...++....++
T Consensus 298 A~GD~~~~~~l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~~if~~p~ia~vG~te~~a~~~~~~~~~~~~~~~~~~~~~ 377 (446)
T TIGR01424 298 AVGDVTDRINLTPVAIMEATCFANTEFGNNPTKFDHDLIATAVFSQPPLGTVGLTEEEAREKFTGDILVYRAGFRPMKNT 377 (446)
T ss_pred EeeccCCCccchhHHHHHHHHHHHHHhcCCCCccCcCCCCeEEeCCchhEEEECCHHHHHhhcCCCEEEEEEecCchHhH
Confidence 999999989999999999999999999854 56778899999999999999999999999984 8999998888888888
Q ss_pred hhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHH
Q psy9583 788 RILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEA 855 (866)
Q Consensus 788 ~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~ 855 (866)
.+.+.+.||+||++|+++++|||+|++|++|+|+|+.+++||++++|++||++++|+|||++|.+.++
T Consensus 378 ~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 445 (446)
T TIGR01424 378 FSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFVTM 445 (446)
T ss_pred hhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHhhc
Confidence 77777899999999999999999999999999999999999999999999999999999999998765
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-69 Score=612.68 Aligned_cols=442 Identities=29% Similarity=0.468 Sum_probs=393.4
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++|||+||||||||++||.+|++.|++|+|||++ .+||+|.|.||+|+|.++..+...+.+.+ ...+|++..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-------~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~ 72 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-------KLGGTCVNVGCVPKKVMWYASDLAERMHD-AADYGFYQN 72 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-------ccccceeccCcCccHHHHHHHHHHHHHhH-HhhcCcccC
Confidence 3699999999999999999999999999999984 79999999999999999999988877654 566777643
Q ss_pred -ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 469 -NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 469 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
...++|.++..+.+++++.+...+...+++.+|+++.++.++.+. +++.+ ++..+.||+||||||++|+.|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~-----~~v~v---~~~~~~~d~vIiAtGs~p~~p 144 (450)
T TIGR01421 73 LENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKD-----GTVEV---NGRDYTAPHILIATGGKPSFP 144 (450)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC-----CEEEE---CCEEEEeCEEEEecCCCCCCC
Confidence 335899999999999999988888888999999999999988655 66666 356799999999999999876
Q ss_pred -CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 548 -PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 548 -p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
+.++. ...+++++++.+...+++++|||||++|+|+|..|+++|++|+++++.+++++.+|+++.+.+++.|+++||
T Consensus 145 ~~i~g~--~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI 222 (450)
T TIGR01421 145 ENIPGA--ELGTDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGI 222 (450)
T ss_pred CCCCCC--ceeEcHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCC
Confidence 44332 234677888877778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCe-EEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
++++++.+++++.++++ +.+.++ ++. ..+++|.|++|+|++||++.+.++..+++++++|+|.||+++||++
T Consensus 223 ~i~~~~~v~~i~~~~~~~~~v~~~--~g~-----~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~ 295 (450)
T TIGR01421 223 NVHKLSKPVKVEKTVEGKLVIHFE--DGK-----SIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNV 295 (450)
T ss_pred EEEcCCEEEEEEEeCCceEEEEEC--CCc-----EEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCC
Confidence 99999999999875443 455553 442 3799999999999999999877899999999999999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC--CCCCCCCccEEEEccCceeeeecCHHHHHhc-CCc-EEEEEEec
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK--HSINFNALPFVIYTFPEIASVGKTEQYLKKH-NIS-YNVGIFPF 781 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~~~-~~~~~~~~ 781 (866)
|||||+|||++.+.+++.|.+||++||+||++.. .+.++..+|+++|++|+++++|+||+||++. |++ +.+...++
T Consensus 296 p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~f~~p~ia~vGlte~~a~~~~g~~~~~~~~~~~ 375 (450)
T TIGR01421 296 PGIYALGDVVGKVELTPVAIAAGRKLSERLFNGKTDDKLDYNNVPTVVFSHPPIGTIGLTEKEAIEKYGKENIKVYNSSF 375 (450)
T ss_pred CCEEEEEecCCCcccHHHHHHHHHHHHHHHhcCCCCCccCcccCCeEEeCCCceEEEeCCHHHHHhhcCCCCEEEEEEEc
Confidence 9999999999999999999999999999999643 3467889999999999999999999999877 654 88888888
Q ss_pred CCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHH
Q psy9583 782 LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEA 855 (866)
Q Consensus 782 ~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~ 855 (866)
....++...+.+.||+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|.+.++
T Consensus 376 ~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T TIGR01421 376 TPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 449 (450)
T ss_pred ChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHhhc
Confidence 88888888888899999999999999999999999999999999999999999999999999999999998765
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-69 Score=613.16 Aligned_cols=451 Identities=27% Similarity=0.454 Sum_probs=391.7
Q ss_pred cccceeeecCCccHHHHHHHHHHC-CCeEEEEeccCC--CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWKD--NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~-g~~V~liek~~~--~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
++|||+||||||||+.||.+++++ |.+|+|||+... +.+...+||+|+|+||+|+|.++..++..+...+ ...+|+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~-~~~~gi 80 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRE-SAGFGW 80 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHH-hhccCe
Confidence 469999999999999999999997 999999997310 0011369999999999999999999988887765 466777
Q ss_pred ccc--ccccCHHHHHHHHHHHHHhhhhhHHHHHHh-CCcEEEEeEEEEeccccCcccEEEEEcC---C---ceEEEecEE
Q psy9583 466 NTQ--NVTLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFFHGHAIFTGKIQNNFHEIQIINK---T---KETITAKYI 536 (866)
Q Consensus 466 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~v~~g~~v~~~~~~~~~~~v~v~~~---~---g~~i~~d~l 536 (866)
... ...++|.++..+.+.+++.+...+..++++ .+|+++.|...+.++ +++.|... + .+.+.||+|
T Consensus 81 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~-----~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 81 EFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDK-----NVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred eccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccC-----CEEEEeeccCCCCCcceEEECCEE
Confidence 532 457899999999999999999888888887 499999999999877 88888631 1 257999999
Q ss_pred EEecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhc---CCcEEEEecCCcCCCcccHHH
Q psy9583 537 IIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNFLNTVDEEI 613 (866)
Q Consensus 537 ViATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~---g~~Vtli~~~~~~l~~~d~~~ 613 (866)
|||||++|..|+.++.+ .++++++.+.+...+++++|||||++|+|+|..|..+ |.+|+++++.+++++.+|+++
T Consensus 156 IIATGs~p~~p~i~G~~--~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~ 233 (486)
T TIGR01423 156 LLATGSWPQMLGIPGIE--HCISSNEAFYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTL 233 (486)
T ss_pred EEecCCCCCCCCCCChh--heechhhhhccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHH
Confidence 99999999877655432 3678888877777889999999999999999888765 999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEeCceEEEEEEcCCe-EEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCC
Q psy9583 614 AKKAFHLLNKQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNEN 692 (866)
Q Consensus 614 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~ 692 (866)
.+.+.+.|+++||++++++.+++++.++++ ..+.+. ++. ++++|.|++|+|++|+++.+.+++++++++++
T Consensus 234 ~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~--~g~------~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~ 305 (486)
T TIGR01423 234 RKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFE--SGK------TLDVDVVMMAIGRVPRTQTLQLDKVGVELTKK 305 (486)
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEc--CCC------EEEcCEEEEeeCCCcCcccCCchhhCceECCC
Confidence 999999999999999999999999875443 445543 454 79999999999999999988788999999989
Q ss_pred CcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhcC
Q psy9583 693 NFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKHN 771 (866)
Q Consensus 693 G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~ 771 (866)
|+|.||+++||++|||||+|||++.+++++.|.+||++||+||++.. ..+++..+|+++|+.|++++||+||+||++.+
T Consensus 306 G~I~Vd~~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~~vft~peia~vGlte~eA~~~~ 385 (486)
T TIGR01423 306 GAIQVDEFSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLVEEDAAKKF 385 (486)
T ss_pred CCEecCCCCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCCCcccCCCCCCEEEeCCCceEEeeCCHHHHHhcC
Confidence 99999999999999999999999999999999999999999999864 44677789999999999999999999999987
Q ss_pred CcEEEEEEecCCchhhhhcCC--ceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChh
Q psy9583 772 ISYNVGIFPFLANSRARILGE--TSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLS 849 (866)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~--~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~ 849 (866)
.++.+...++....+... +. +.||+||++|+++++|||+|++|++|.|+|+.+++||++++|++||++++|+|||++
T Consensus 386 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai~~~~t~~dl~~~~~~hPt~s 464 (486)
T TIGR01423 386 EKVAVYESSFTPLMHNIS-GSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICLKLNAKISDFYNTIGVHPTSA 464 (486)
T ss_pred CceEEEEEeeCchhhhhc-cCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCCcH
Confidence 777777777665544433 33 369999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy9583 850 EAMKEAA 856 (866)
Q Consensus 850 e~~~~~~ 856 (866)
|.+.++.
T Consensus 465 E~~~~~~ 471 (486)
T TIGR01423 465 EELCSMR 471 (486)
T ss_pred HHHHhhc
Confidence 9998886
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-69 Score=613.51 Aligned_cols=444 Identities=28% Similarity=0.463 Sum_probs=397.7
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|+.+|||+||||||||++||.+|+++|++|+|||+. .+||+|.|.||+|+|.+++.++..+.+......+|+.
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-------~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~ 73 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-------RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFD 73 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-------chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCC
Confidence 445699999999999999999999999999999984 7999999999999999999888877666544567776
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.....++|..+..+.+..++++...+...+++.+|+++.+++.+++. +++++ ++..+.||+||||||+.|+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~-----~~v~~---~g~~~~~d~lViATGs~p~~ 145 (450)
T PRK06116 74 VTENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA-----HTVEV---NGERYTADHILIATGGRPSI 145 (450)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC-----CEEEE---CCEEEEeCEEEEecCCCCCC
Confidence 55567899999999888888888888888899999999999888765 67777 45789999999999999987
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
|+.++. ..++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++++.+++.+++++.+.+.+.|++.||
T Consensus 146 p~i~g~--~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV 223 (450)
T PRK06116 146 PDIPGA--EYGITSDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGI 223 (450)
T ss_pred CCCCCc--ceeEchhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCc
Confidence 765442 346778777777778899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCe-EEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
+++++++|.+++.++++ +.+.+. +|. ++++|.|++|+|++|+++.+.++..+++++++|+|.||+++||++
T Consensus 224 ~i~~~~~V~~i~~~~~g~~~v~~~--~g~------~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~ 295 (450)
T PRK06116 224 RLHTNAVPKAVEKNADGSLTLTLE--DGE------TLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNV 295 (450)
T ss_pred EEECCCEEEEEEEcCCceEEEEEc--CCc------EEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCC
Confidence 99999999999876544 555543 554 789999999999999999877788999999999999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC--CCCCCCCccEEEEccCceeeeecCHHHHHhcCCc--EEEEEEec
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK--HSINFNALPFVIYTFPEIASVGKTEQYLKKHNIS--YNVGIFPF 781 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~--~~~~~~~~ 781 (866)
|||||+|||++.+++++.|++||++||+||++.. ...++..+|+++|++|++++||+||+||++.|++ +.+...++
T Consensus 296 ~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~if~~p~~a~vGlte~~a~~~~~~~~~~~~~~~~ 375 (450)
T PRK06116 296 PGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAREQYGEDNVKVYRSSF 375 (450)
T ss_pred CCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCeEEeCCCccEEeeCCHHHHHHhCCCCcEEEEEEec
Confidence 9999999999988999999999999999999854 3457889999999999999999999999999887 88888888
Q ss_pred CCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHH
Q psy9583 782 LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEA 855 (866)
Q Consensus 782 ~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~ 855 (866)
....++...+++.||+||++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|++.++
T Consensus 376 ~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 449 (450)
T PRK06116 376 TPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM 449 (450)
T ss_pred chhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHhhc
Confidence 88888887788899999999999999999999999999999999999999999999999999999999999865
|
|
| >PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-70 Score=631.58 Aligned_cols=379 Identities=33% Similarity=0.557 Sum_probs=321.6
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
+++|+||+||+ |+||+|++|+|++||.|++||+|++|||||+.++|+||++|+|.++++++|+.|++|++|+.++..++
T Consensus 119 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~v~~G~~l~~i~~~~~ 197 (547)
T PRK11855 119 VVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDKVSVGSLLVVIEVAAA 197 (547)
T ss_pred ceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCEecCCCEEEEEecCCC
Confidence 47899999999 99999999999999999999999999999999999999999999999999999999999999975421
Q ss_pred cc-----cccc-------c---ccccc----c-c--c----cccc-ccchhHHHhhhhCCCCcccccCCCCCCCceeehh
Q psy9583 83 KL-----SSKT-------E---IKNKK----D-I--K----NLNT-IVMPSAKKILSDNNLEISKINNGTGKDGRIIKED 135 (866)
Q Consensus 83 ~~-----~~~~-------~---~~~~~----~-~--~----~~~~-~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~D 135 (866)
.. ++.. . ..+.+ . . . ..+. ++||+||+||+++||||+.| +|||++|||+++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v-~gtG~~GrI~~~D 276 (547)
T PRK11855 198 APAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLARELGVDLSQV-KGTGKKGRITKED 276 (547)
T ss_pred ccccccCCCCCCCccccccCCCCCCcccccCCccccccccccCCcccCChHHHHHHHHhCCCHHHC-cCCCCCCcEeHHH
Confidence 10 0000 0 00000 0 0 0 1122 68999999999999999999 8999999999999
Q ss_pred HHhhhhhccccccccc--cccCCCccc--cccc--cC--CCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHH
Q psy9583 136 VLKVLSSIKNINEEKQ--EKYKPYLDS--ISIK--NN--SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSI 207 (866)
Q Consensus 136 v~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~--~~--~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l 207 (866)
|++|+.........++ +...+.... .+.+ .. ....+.+||+++||.||++|++|++++|||+++.++|+|+|
T Consensus 277 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l 356 (547)
T PRK11855 277 VQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDL 356 (547)
T ss_pred HHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHH
Confidence 9999753211100000 000000000 0000 00 01235689999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEe--CCeeEEccceeEEEEEecCCceEEeEEecCCCCC
Q psy9583 208 IDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVD--GNNIIYHKYYDIGIAISSSRGLVVPILRNADTMS 285 (866)
Q Consensus 208 ~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~--~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~ 285 (866)
+++|+++++.+++. |.++||++||+||+++||++||+||++|+ ++.+++++++|||+||++++||++|||+|++++|
T Consensus 357 ~~~r~~~~~~~~~~-g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~s 435 (547)
T PRK11855 357 EALRKQLKKEAEKA-GVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKKS 435 (547)
T ss_pred HHHHHHhhhhhhhc-CCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccCC
Confidence 99999998765443 89999999999999999999999999998 5689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeee
Q psy9583 286 IADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFA 365 (866)
Q Consensus 286 ~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~ 365 (866)
+.+|+++++++++++|+|+|.++|++||||||||+||+|.++|+|+|||||+|||++|++.++|++.++.+.+|++|+++
T Consensus 436 l~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~~~~~r~~m~ls 515 (547)
T PRK11855 436 LLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPLS 515 (547)
T ss_pred HHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeCCccccccceecCcCCCceEEEEcccceEeeeeeCCEEEEEeEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred ecccccccccchhhhhhhh
Q psy9583 366 LSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 366 l~~dhr~~dg~~a~~~~~~ 384 (866)
++||||++||.++++|+..
T Consensus 516 lt~DHRviDG~~aa~Fl~~ 534 (547)
T PRK11855 516 LSYDHRVIDGATAARFTNY 534 (547)
T ss_pred EEccchhcCcHHHHHHHHH
Confidence 9999999999999988764
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=612.41 Aligned_cols=456 Identities=44% Similarity=0.729 Sum_probs=411.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.|||+||||||||++||..|+++|++|+|||+. .+||+|.+.||+|+|.++..++.++.... ...+|+....
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~-------~~GG~c~~~gciP~k~l~~~~~~~~~~~~-~~~~g~~~~~ 75 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKE-------KLGGTCLNRGCIPSKALLHAAERADEARH-SEDFGIKAEN 75 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCcEEEEecc-------ccccceeecccCCcHHHHHhhhHHHHHHH-HHhcCcccCC
Confidence 599999999999999999999999999999985 49999999999999999999888777665 5667776555
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEc-CCceEEEecEEEEecCCCCcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIIN-KTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~-~~g~~i~~d~lViATGs~p~~~p 548 (866)
..++|..+..+.+...+.+...+...+++.+|+++.+++.+++. +.+.+.. +++..+.||+||||||++|..||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~-----~~~~v~~~~~~~~~~~d~lViAtGs~p~~~p 150 (462)
T PRK06416 76 VGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDP-----NTVRVMTEDGEQTYTAKNIILATGSRPRELP 150 (462)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC-----CEEEEecCCCcEEEEeCEEEEeCCCCCCCCC
Confidence 57899999999999888888888888899999999999988766 6777764 23478999999999999998888
Q ss_pred CCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEE
Q psy9583 549 GVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 628 (866)
+....+..++++++...+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+++||++
T Consensus 151 g~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i 230 (462)
T PRK06416 151 GIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKI 230 (462)
T ss_pred CCCCCCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEE
Confidence 77656667888888888777889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCE
Q psy9583 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNI 708 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~V 708 (866)
++++.+++++.+++.+.+.+..+ +. ..++++|.|++|+|++|+..++++++.+++++ +|+|.||+++||++|+|
T Consensus 231 ~~~~~V~~i~~~~~~v~v~~~~g-g~----~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~t~~~~V 304 (462)
T PRK06416 231 KTGAKAKKVEQTDDGVTVTLEDG-GK----EETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLRTNVPNI 304 (462)
T ss_pred EeCCEEEEEEEeCCEEEEEEEeC-Ce----eEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCccCCCCE
Confidence 99999999988766666655421 21 24799999999999999999877788999998 89999999999999999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhh
Q psy9583 709 YAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRAR 788 (866)
Q Consensus 709 yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~ 788 (866)
||+|||++.+++++.|..||++||.||++....+++..+|.+.|++|+++++|+||+||++.|+++.+..+++....++.
T Consensus 305 yAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~ 384 (462)
T PRK06416 305 YAIGDIVGGPMLAHKASAEGIIAAEAIAGNPHPIDYRGIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVKFPFAGNGKAL 384 (462)
T ss_pred EEeeecCCCcchHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCeEEEEEecCcChHhH
Confidence 99999998889999999999999999999877777888999999999999999999999999999999999999899999
Q ss_pred hcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhcc
Q psy9583 789 ILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864 (866)
Q Consensus 789 ~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~ 864 (866)
+.+.+.||+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++++.++++.+
T Consensus 385 ~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~ 460 (462)
T PRK06416 385 ALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALGEAALAAAGKPL 460 (462)
T ss_pred hcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHhccCcc
Confidence 8888899999999999999999999999999999999999999999999999999999999999999987766544
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-68 Score=614.77 Aligned_cols=452 Identities=33% Similarity=0.531 Sum_probs=405.0
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhc-Cccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEY-GINT 467 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~-gi~~ 467 (866)
++|||+||||||||++||.+|++.|++|+|||+. +.+||+|.+.||+|+|.+......+..... ...+ .+.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~------~~~GG~~~~~gcipsk~l~~~~~~~~~~~~-~~~~~~~~- 75 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERY------RNVGGGCTHTGTIPSKALREAVLRLIGFNQ-NPLYSSYR- 75 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecc------ccccccccccCCCCHHHHHHHHHHHHHHhh-hhhhcccC-
Confidence 3699999999999999999999999999999996 589999999999999998877666544332 1111 111
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCc
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKAR 545 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~ 545 (866)
.....+|..+..+.+...+++...+...+++.+|+++.++..+++. +.+.+...++ ..+.||+||||||+.|+
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~v~~~~g~~~~~~~d~lviATGs~p~ 150 (461)
T PRK05249 76 VKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDP-----HTVEVECPDGEVETLTADKIVIATGSRPY 150 (461)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecC-----CEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence 1245689999999998888888888888999999999999888766 7777766555 47999999999999999
Q ss_pred CCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 546 SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 546 ~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
.||..+.....++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++...+.+.|+++|
T Consensus 151 ~p~~~~~~~~~v~~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~g 230 (461)
T PRK05249 151 RPPDVDFDHPRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSG 230 (461)
T ss_pred CCCCCCCCCCeEEcHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcC
Confidence 88777766777889988888878899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
|++++++.+++++.+++++.+.+. +|. ++++|.|++|+|++||++.+.+++.+++++++|+|.||+++||++
T Consensus 231 I~v~~~~~v~~i~~~~~~~~v~~~--~g~------~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~ 302 (461)
T PRK05249 231 VTIRHNEEVEKVEGGDDGVIVHLK--SGK------KIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAV 302 (461)
T ss_pred CEEEECCEEEEEEEeCCeEEEEEC--CCC------EEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCC
Confidence 999999999999876666665543 554 799999999999999999877889999999899999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCch
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS 785 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~ 785 (866)
|+|||+|||++.+++++.|.+||++||.||+|.....++..+|+++|+.|+++++|+||+||++.|+++.+...++....
T Consensus 303 ~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~i~~~p~ia~vG~te~~a~~~g~~~~~~~~~~~~~~ 382 (461)
T PRK05249 303 PHIYAVGDVIGFPSLASASMDQGRIAAQHAVGEATAHLIEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELA 382 (461)
T ss_pred CCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCCcccccCCCCeEEECCCcceEecCCHHHHHHcCCCeEEEEEcccccc
Confidence 99999999999899999999999999999998766677889999999999999999999999999999999999999999
Q ss_pred hhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhh
Q psy9583 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIEN 861 (866)
Q Consensus 786 ~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~ 861 (866)
++.+.+++.||+||++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++++|||++|++.++++.+.+
T Consensus 383 ~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~~~ 458 (461)
T PRK05249 383 RAQIAGDNVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMAEAYRVAALDGLN 458 (461)
T ss_pred ceeecCCCCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHhc
Confidence 9888888899999999999999999999999999999999999999999999999999999999999999887654
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-69 Score=609.90 Aligned_cols=443 Identities=28% Similarity=0.484 Sum_probs=390.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+||++|||+||+|+.||.. ..|.+|+|||++ .+||+|+|+||+|+|.++..++..+.+.+ ...+|+....
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-------~~GGtC~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~ 71 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-------TFGGTCLNVGCIPTKMFVYAAEVAQSIGE-SARLGIDAEI 71 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-------CCCCeeeccCccchHHHHHHHHHHHHHHH-hhccCeeCCC
Confidence 5999999999999998654 469999999984 79999999999999999999998887775 5677886545
Q ss_pred cccCHHHHHHHHHH-HHHhhhhh-HHHHH--HhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 470 VTLNLQKMLERKNN-IIKKNNSG-ILFLF--KKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 470 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~--~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
..+||.++..+... ..+.+... ....+ ++.||+++.|+.++.+. +++.+ .++.++.||+||||||++|.
T Consensus 72 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~-----~~V~~--~~g~~~~~d~lIiATGs~p~ 144 (452)
T TIGR03452 72 DSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGP-----RTLRT--GDGEEITGDQIVIAAGSRPY 144 (452)
T ss_pred CccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecC-----CEEEE--CCCcEEEeCEEEEEECCCCC
Confidence 57899999999877 66665443 22323 44899999999999866 77776 34567999999999999998
Q ss_pred CCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 546 SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 546 ~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
.|++.+..+..++++++++++...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++...+.+.+ +.|
T Consensus 145 ~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~g 223 (452)
T TIGR03452 145 IPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKK 223 (452)
T ss_pred CCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcC
Confidence 7776554455678888888887789999999999999999999999999999999999999989999998887755 468
Q ss_pred CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
|++++++.+++++.+++++.+.+. +|. ++++|.+++|+|++||++++.++.+|++++++|+|.||+++||++
T Consensus 224 I~i~~~~~V~~i~~~~~~v~v~~~--~g~------~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~ 295 (452)
T TIGR03452 224 WDIRLGRNVTAVEQDGDGVTLTLD--DGS------TVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSA 295 (452)
T ss_pred CEEEeCCEEEEEEEcCCeEEEEEc--CCC------EEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCC
Confidence 999999999999877666655553 554 799999999999999999988888999999899999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC--CCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCC
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK--HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLA 783 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~--~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~ 783 (866)
|+|||+|||++.+++.+.|.+||+++|+||++.. ..+++..+|+++|++|+++++|+||+||++.|+++.+...++..
T Consensus 296 ~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~i~t~p~ia~vGlte~ea~~~g~~~~~~~~~~~~ 375 (452)
T TIGR03452 296 RGVWALGDVSSPYQLKHVANAEARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGD 375 (452)
T ss_pred CCEEEeecccCcccChhHHHHHHHHHHHHhcCCCCcccCCCCCCCeEEECCCCeeeeeCCHHHHHhcCCCeEEEEecCCc
Confidence 9999999999998999999999999999999864 35677889999999999999999999999999999999999998
Q ss_pred chhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccc-cccCCChhHHHHHHHHH
Q psy9583 784 NSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARI-CHVHPSLSEAMKEAAMS 858 (866)
Q Consensus 784 ~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~-~~~~Pt~~e~~~~~~~~ 858 (866)
..++.+.+++.||+||++|+++++|||+|++|++|.|+|+.+++||++++|++||+.+ +|+|||++|++.++++.
T Consensus 376 ~~~~~~~~~~~g~~Klv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~ 451 (452)
T TIGR03452 376 VAYGWAMEDTTGFCKLIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLG 451 (452)
T ss_pred hhhHhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhc
Confidence 9998888888999999999999999999999999999999999999999999999997 78999999999988864
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-68 Score=609.67 Aligned_cols=455 Identities=25% Similarity=0.453 Sum_probs=407.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc--
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ-- 468 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~-- 468 (866)
.|++|||+|++|+.||..++++|.+|+|||++ .+||+|++.||+|+|.++..++..+.+.. ...+|+...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-------~~gG~c~~~gciPsK~l~~~a~~~~~~~~-~~~~g~~~~~~ 73 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-------GLGGAAVLTDCVPSKTLIATAEVRTELRR-AAELGIRFIDD 73 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-------CCCCcccccCCcchHHHHHHHHHHHHHHH-HHhCCcccccC
Confidence 58999999999999999999999999999985 68999999999999999998888777765 667787642
Q ss_pred -ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCce--EEEecEEEEecCCCCc
Q psy9583 469 -NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKE--TITAKYIIIATGSKAR 545 (866)
Q Consensus 469 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~--~i~~d~lViATGs~p~ 545 (866)
...++|..+..+.+...+.+...+...+++++|+++.+++.+++. +.+.+++.+.+.+|. ++.||+||||||+.|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~-~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 74 GEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDP-GLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeec-ccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 457899999999999988888788888999999999999988320 012277888665553 7999999999999998
Q ss_pred CCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 546 SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 546 ~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
.+|+.......++++.++.+....+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++...+.+.|+++|
T Consensus 153 ~~p~~~~~~~~v~~~~~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~g 232 (466)
T PRK07845 153 ILPTAEPDGERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRG 232 (466)
T ss_pred CCCCCCCCCceEEeehhhhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCC
Confidence 77765445566888888887777889999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
|++++++.+.+++.+++++.+.+. +|. ++++|.|++++|++||+..+.++++|++++++|+|.||+++||++
T Consensus 233 V~i~~~~~v~~v~~~~~~~~v~~~--~g~------~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~ 304 (466)
T PRK07845 233 MTVLKRSRAESVERTGDGVVVTLT--DGR------TVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSV 304 (466)
T ss_pred cEEEcCCEEEEEEEeCCEEEEEEC--CCc------EEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCC
Confidence 999999999999876666665553 555 799999999999999999877889999999899999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCc
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~ 784 (866)
|||||+|||++.+++++.|..||++|++|+++.. .++++..+|+++|++|+++++|+||+||++.|+++.+..+++...
T Consensus 305 ~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~vf~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~ 384 (466)
T PRK07845 305 PGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEAVSPLRLKTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATN 384 (466)
T ss_pred CCEEEEeeccCCccchhHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCCcceeecCCHHHHHhCCCceEEEEEecccC
Confidence 9999999999999999999999999999999865 456778899999999999999999999999999999999999989
Q ss_pred hhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhh
Q psy9583 785 SRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENR 862 (866)
Q Consensus 785 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~ 862 (866)
.++.+.+.+.||+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|.+.++++.+...
T Consensus 385 ~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~ 462 (466)
T PRK07845 385 PRAKMSGLRDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVYPSLSGSITEAARRLMAH 462 (466)
T ss_pred chhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCCCCHHHHHHHHHHHhhcc
Confidence 999988888999999999999999999999999999999999999999999999999999999999999999877653
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-68 Score=611.62 Aligned_cols=464 Identities=40% Similarity=0.683 Sum_probs=409.4
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|++.|||+||||||||++||.+|+++|++|+|||+. .+||+|.+.||+|+|.++..++.++.... ...+|+.
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-------~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~ 72 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-------KLGGTCLHKGCIPSKALLHSAEVFQTAKK-ASPFGIS 72 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-------CCCcceEcCCcCchHHHHHHHHHHHHHHH-HHhcCcc
Confidence 556799999999999999999999999999999984 78999999999999999999988877765 5667776
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccc--cCcccEEEEEcCCc--eEEEecEEEEecCC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKI--QNNFHEIQIINKTK--ETITAKYIIIATGS 542 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~--~~~~~~v~v~~~~g--~~i~~d~lViATGs 542 (866)
.....++|.++..+.+..++++...+..++++.+|+++.+++.+++.. +....++.+.+.+| .++.||+||||||+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs 152 (472)
T PRK05976 73 VSGPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGS 152 (472)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCC
Confidence 555678999999999999998888888889999999999999988761 11123788876555 67999999999999
Q ss_pred CCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHH
Q psy9583 543 KARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622 (866)
Q Consensus 543 ~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~ 622 (866)
+|..+|+.+..+.+++++++...+...+++++|||||++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|+
T Consensus 153 ~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~ 232 (472)
T PRK05976 153 RPVELPGLPFDGEYVISSDEALSLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLK 232 (472)
T ss_pred CCCCCCCCCCCCceEEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHH
Confidence 99877776656667888888888777889999999999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEeCceEEEEEEc-CCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC
Q psy9583 623 KQGLNIILNTKIHDIKIN-KENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 623 ~~GV~i~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l 701 (866)
+.||++++++.+++++.. ++++.+... .+|. ..++++|.+++|+|++|+++.+.++..++..+ +|+|.||+++
T Consensus 233 ~~gI~i~~~~~v~~i~~~~~~~~~~~~~-~~g~----~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l 306 (472)
T PRK05976 233 KLGVRVVTGAKVLGLTLKKDGGVLIVAE-HNGE----EKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFC 306 (472)
T ss_pred hcCCEEEeCcEEEEEEEecCCCEEEEEE-eCCc----eEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCc
Confidence 999999999999999852 333333222 2442 24799999999999999998776777777764 7889999999
Q ss_pred CCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEe
Q psy9583 702 ETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFP 780 (866)
Q Consensus 702 ~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~ 780 (866)
+|+.|+|||+|||++.+++++.|..||++||+||+|.. ..+++...|.++|++|+++++|++|+||++.|+++.+..++
T Consensus 307 ~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~g~~~~~~~~~ 386 (472)
T PRK05976 307 QTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPEVASVGLTEEEAKEAGYDVKVGKFP 386 (472)
T ss_pred ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCceEEEeCCHHHHHHcCCCEEEEEEE
Confidence 99999999999999988999999999999999999875 66778889999999999999999999999999999999999
Q ss_pred cCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhh
Q psy9583 781 FLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860 (866)
Q Consensus 781 ~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~ 860 (866)
+....++.+.+.+.||+||++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|.+.++++.+.
T Consensus 387 ~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~ 466 (472)
T PRK05976 387 FAANGKALTYGESDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHPHPTLSEAIQEAALAAD 466 (472)
T ss_pred CCcchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhh
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999999998664
Q ss_pred hhcc
Q psy9583 861 NRSI 864 (866)
Q Consensus 861 ~~~~ 864 (866)
++.+
T Consensus 467 ~~~~ 470 (472)
T PRK05976 467 GHAL 470 (472)
T ss_pred cCcc
Confidence 4433
|
|
| >KOG0558|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-72 Score=556.99 Aligned_cols=378 Identities=30% Similarity=0.516 Sum_probs=324.6
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
.++|++-++||++.|.++.+|+|||||+|++.|+||||++||++++|+|.++|+|++++.+.+++..||++|..++.++.
T Consensus 64 vv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddia~VGk~Lvd~eve~~ 143 (474)
T KOG0558|consen 64 VVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDIAKVGKPLVDLEVEDS 143 (474)
T ss_pred eEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhhhHhCcceeeeeeccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred cccc---cccc------cccccccccccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhhccccccc--cc
Q psy9583 83 KLSS---KTEI------KNKKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEE--KQ 151 (866)
Q Consensus 83 ~~~~---~~~~------~~~~~~~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~~~~~~~~--~~ 151 (866)
..+. ...+ .+....+.....++|++|+||.|++|||+.| .|||.+|||.|+||++|+.+....... +.
T Consensus 144 ~ds~e~s~es~~vs~~~~~~~~~~~~~tlaTPaVRrlA~e~~idla~v-~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~ 222 (474)
T KOG0558|consen 144 QDSPEDSDESPAVSLGESKQGEESLLKTLATPAVRRLAKENGIDLAEV-TGTGKDGRVLKEDVLRFLGQVPGFVTDPSPS 222 (474)
T ss_pred cCCcccCCccccccCCCCchhhhhccccccCHHHHHHHHHhCCceEee-eccCCCCcchHHHHHHHhccCCCCccCCCCc
Confidence 2111 0000 0111222345679999999999999999999 799999999999999999764321111 11
Q ss_pred cccCCCccccc--cccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHH
Q psy9583 152 EKYKPYLDSIS--IKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFM 229 (866)
Q Consensus 152 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~ 229 (866)
..+.++.+.++ ...+-..+..+|+.+.+|+|.+.|+.+. .+|||.+.+|||+|.|+++|++++.. ++..++|+||+
T Consensus 223 ~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~al-kiPHF~y~dEIn~~sLvklr~elk~~-a~e~~IKltfm 300 (474)
T KOG0558|consen 223 EHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEAL-KIPHFGYVDEINCDSLVKLRQELKEN-AKERGIKLTFM 300 (474)
T ss_pred eeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHHh-cCCccccccccChHHHHHHHHHHhhh-hhhcCceeeeh
Confidence 11111111111 0111223568999999999999999994 68999999999999999999999865 45569999999
Q ss_pred HHHHHHHHHHHHhCCccceEEeC--CeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q psy9583 230 SFFVKAVVSALKQYPIINASVDG--NNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLP 307 (866)
Q Consensus 230 ~~~~ka~~~al~~~P~~n~~~~~--~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~ 307 (866)
+|++||++.||.++|.+|+++|. +.|++.-.+|||+|++|+.||+||.|+|++.+|+.||++++++|.++.+.|+|+|
T Consensus 301 Pf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~ 380 (474)
T KOG0558|consen 301 PFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSP 380 (474)
T ss_pred HHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcCh
Confidence 99999999999999999999986 5799999999999999999999999999999999999999999999999999999
Q ss_pred cccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEE-eCCeeEeeeeeeeeecccccccccchhhhhhh
Q psy9583 308 EEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIV-ENNNVVIRPINYFALSYDHRIIDGREAVLSLM 383 (866)
Q Consensus 308 ~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~-~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~ 383 (866)
+|+.|||||+||+|.+|+.+..|+|+|||+||.++|+|...|.+ ..|++....+|.++++.|||++||+..++|-.
T Consensus 381 ~D~t~GTftLSNIG~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn 457 (474)
T KOG0558|consen 381 EDLTGGTFTLSNIGAIGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSN 457 (474)
T ss_pred hhccCceEEeeecccccccccCcccccchhhhhhccccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 45889999999999999999999999876653
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-68 Score=612.28 Aligned_cols=451 Identities=26% Similarity=0.416 Sum_probs=397.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC--CC-cccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK--DN-EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~--~~-~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
+|||+||||||||+.||.+++++|.+|+|||+.. .+ .....+||+|+|.||+|+|.+++.+...+.+.. ...+|+.
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~-~~~~G~~ 103 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFED-AKNYGWE 103 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHH-HHhcCcc
Confidence 5999999999999999999999999999999621 00 011469999999999999999999988776655 5667776
Q ss_pred cc-ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCce--EEEecEEEEecCCC
Q psy9583 467 TQ-NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKE--TITAKYIIIATGSK 543 (866)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~--~i~~d~lViATGs~ 543 (866)
.. ...++|.+++.+....+.++...+...++..+|+++.+.+.+++. +.+.+...+|+ .+.||+||||||++
T Consensus 104 ~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~-----~~v~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 104 INEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGP-----NEVEVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecC-----CEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence 43 457899999999988898888888889999999999999999877 77888765653 68999999999999
Q ss_pred CcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH
Q psy9583 544 ARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK 623 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~ 623 (866)
|..|+.++.+ ..+++++.+.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+|+++...+.+.|++
T Consensus 179 p~~p~ipG~~--~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~ 256 (499)
T PLN02507 179 AQRPNIPGKE--LAITSDEALSLEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEG 256 (499)
T ss_pred CCCCCCCCcc--ceechHHhhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHh
Confidence 9876555432 34677888777778999999999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCC
Q psy9583 624 QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCET 703 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~T 703 (866)
.||++++++.|++++.+++++.+.+. +|. ++++|.|++++|++||++++.++++|++++++|+|.||+++||
T Consensus 257 ~GI~i~~~~~V~~i~~~~~~~~v~~~--~g~------~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~T 328 (499)
T PLN02507 257 RGINLHPRTNLTQLTKTEGGIKVITD--HGE------EFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSRT 328 (499)
T ss_pred CCCEEEeCCEEEEEEEeCCeEEEEEC--CCc------EEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCcC
Confidence 99999999999999876666655543 554 7999999999999999998878899999998899999999999
Q ss_pred CCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhc-CCcEEEEEEec
Q psy9583 704 NIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKH-NISYNVGIFPF 781 (866)
Q Consensus 704 s~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~~~~~~~~~~~ 781 (866)
++|||||+|||++.+.+++.|.+||++||+||++.. ...++..+|+++|+.|++++||+||+||++. +.++.+...++
T Consensus 329 s~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~~if~~p~ia~vGlte~ea~~~~~~~~~~~~~~~ 408 (499)
T PLN02507 329 NIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGGQPTKPDYENVACAVFCIPPLSVVGLSEEEAVEQAKGDILVFTSSF 408 (499)
T ss_pred CCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCeEEECCCccEEEeCCHHHHHhccCCCEEEEEeec
Confidence 999999999999989999999999999999999754 3346778899999999999999999999987 67888888888
Q ss_pred CCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHH
Q psy9583 782 LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856 (866)
Q Consensus 782 ~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 856 (866)
....++.....+.+|+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++|+|||++|.+.+++
T Consensus 409 ~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~ 483 (499)
T PLN02507 409 NPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFDSTVGIHPSAAEEFVTMR 483 (499)
T ss_pred CccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcCcCCCChHHHHHHHH
Confidence 777776665567899999999999999999999999999999999999999999999999999999999998776
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-69 Score=616.17 Aligned_cols=448 Identities=23% Similarity=0.372 Sum_probs=394.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC--CC-cccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK--DN-EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~--~~-~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
+|||+|||+||||+.||..|+++|.+|+|||+.. .. .....+||+|+|+||+|+|.++..++..+.+.+ ...+|+.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~-~~~~g~~ 157 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEE-SRGFGWK 157 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHh-hhhcCcc
Confidence 5999999999999999999999999999999620 00 011468999999999999999999988877765 5677876
Q ss_pred cc-ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 467 TQ-NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
.. ...+||..+..+++..+.++...+...+++.||+++.|...+++. +++.+ +|..+.||+||||||++|.
T Consensus 158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~-----~~V~v---~G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDP-----HTVDV---DGKLYTARNILIAVGGRPF 229 (558)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccC-----CEEEE---CCEEEECCEEEEeCCCCCC
Confidence 53 457899999999999999999999999999999999999999876 66766 4678999999999999998
Q ss_pred CCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 546 SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 546 ~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
.|+.++. ..++++++++.+...+++++|||||++|+|+|..|.++|.+|+++++.+++++.+|+++...+++.|+++|
T Consensus 230 ~P~IpG~--~~v~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~G 307 (558)
T PLN02546 230 IPDIPGI--EHAIDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLRG 307 (558)
T ss_pred CCCCCCh--hhccCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHCC
Confidence 7765543 24678888887777789999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCceEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 626 LNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
|++++++.+.++..+++ .+.+.. .++. ...+|.|++++|++||+++|.++++|++++++|+|.||+++||+
T Consensus 308 V~i~~~~~v~~i~~~~~g~v~v~~--~~g~------~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts 379 (558)
T PLN02546 308 IEFHTEESPQAIIKSADGSLSLKT--NKGT------VEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS 379 (558)
T ss_pred cEEEeCCEEEEEEEcCCCEEEEEE--CCeE------EEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeC
Confidence 99999999999986433 333322 2332 45589999999999999987778999999988999999999999
Q ss_pred CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCC
Q psy9583 705 IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLA 783 (866)
Q Consensus 705 ~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~ 783 (866)
+|||||+|||++.+++++.|.+||+++|+||++.. ...++..+|+++|++|++++||+||+||++.|+++.+...++..
T Consensus 380 ~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~~vft~Peia~VGlte~eA~~~g~~~~~~~~~~~~ 459 (558)
T PLN02546 380 VPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNEPTKPDYRAVPSAVFSQPPIGQVGLTEEQAIEEYGDVDVFTANFRP 459 (558)
T ss_pred CCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEeCCchHhhccCCHHHHHHcCCCeEEEEEeccc
Confidence 99999999999999999999999999999999864 33567889999999999999999999999999999998888887
Q ss_pred chhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHH
Q psy9583 784 NSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856 (866)
Q Consensus 784 ~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 856 (866)
..++...+.+.||+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++|+|||++|.+..++
T Consensus 460 ~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPT~~E~~~~~~ 532 (558)
T PLN02546 460 LKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATVGIHPTAAEEFVTMR 532 (558)
T ss_pred chhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHh
Confidence 7776665567899999999999999999999999999999999999999999999999999999999998776
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-68 Score=607.91 Aligned_cols=453 Identities=38% Similarity=0.647 Sum_probs=407.5
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc--c
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ--N 469 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~--~ 469 (866)
+|+||||||||++||.+|++.|.+|+|||++ .+||+|+|.||+|+|.++..++.++.... ...+|+... .
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-------~~GG~c~n~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~~~ 73 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-------DLGGTCLNEGCMPTKSLLESAEVHDKVKK-ANHFGITLPNGS 73 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-------cccccCCCCccccchHHHHHHHHHHHHHH-HHhcCccccCCC
Confidence 6999999999999999999999999999985 69999999999999999999988877654 456787642 4
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc-eEEEecEEEEecCCCCcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~p~~~p 548 (866)
...+|..+..+.++..+++...+..++++.+++++.|++.+++. +++.+..+++ .++.||+||||||++|+.+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~-----~~v~v~~~~~~~~~~~d~lviATGs~p~~~p 148 (458)
T PRK06912 74 ISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETD-----HRVRVEYGDKEEVVDAEQFIIAAGSEPTELP 148 (458)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccC-----CEEEEeeCCCcEEEECCEEEEeCCCCCCCCC
Confidence 57899999999999999988888888999999999999998876 7888865444 57999999999999998777
Q ss_pred CCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEE
Q psy9583 549 GVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 628 (866)
..+.+...++++.+++.+...+++++|||||++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|++.||++
T Consensus 149 ~~~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i 228 (458)
T PRK06912 149 FAPFDGKWIINSKHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKI 228 (458)
T ss_pred CCCCCCCeEEcchHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEE
Confidence 66666667888888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCE
Q psy9583 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNI 708 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~V 708 (866)
++++.+++++.++..+.+. . ++. ..++++|.|++|+|++|+.+.+.++..+++++++| |.||+++||++|||
T Consensus 229 ~~~~~V~~i~~~~~~v~~~--~-~g~----~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~~ts~~~V 300 (458)
T PRK06912 229 FTGAALKGLNSYKKQALFE--Y-EGS----IQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHMQTNVPHI 300 (458)
T ss_pred EECCEEEEEEEcCCEEEEE--E-CCc----eEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCeecCCCCE
Confidence 9999999998765544332 2 232 23689999999999999999877788899988766 99999999999999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhh
Q psy9583 709 YAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRAR 788 (866)
Q Consensus 709 yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~ 788 (866)
||+|||++.+++++.|.+||++||.||+|....+++..+|+++|++|+++++|+||+||++.|+++.+..+++....++.
T Consensus 301 yA~GD~~~~~~la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~v~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~ 380 (458)
T PRK06912 301 YACGDVIGGIQLAHVAFHEGTTAALHASGEDVKVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFTANGKAL 380 (458)
T ss_pred EEEeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCcCCCCeEEecCchhEEeeCCHHHHHHCCCCeEEEEEecCcchhHh
Confidence 99999999899999999999999999998776677788999999999999999999999999999999998999999999
Q ss_pred hcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccC
Q psy9583 789 ILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865 (866)
Q Consensus 789 ~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 865 (866)
+.+.+.||+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++.++++.+|
T Consensus 381 ~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~ 457 (458)
T PRK06912 381 IIGEQTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQAVGHAVH 457 (458)
T ss_pred hcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHHHHHHHhhcCcCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999877665443
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-68 Score=617.83 Aligned_cols=461 Identities=34% Similarity=0.537 Sum_probs=400.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhh--hhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNS--FFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~--~~~~gi~~ 467 (866)
+|||+|||+|+||+.||.+++++|.+|+|||+++ +.+||+|+|.||+|+|.++..++.++.+... +..+|+..
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~-----~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~ 190 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDD-----DSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYT 190 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-----CccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeee
Confidence 6999999999999999999999999999999731 4799999999999999999999998877652 23567641
Q ss_pred ------------------cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCC-------cEEEEeEEEEeccccCcccEEE
Q psy9583 468 ------------------QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNK-------IKFFHGHAIFTGKIQNNFHEIQ 522 (866)
Q Consensus 468 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-------V~v~~g~~v~~~~~~~~~~~v~ 522 (866)
....++|.++.++.+..++.+...+...+++.+ |++++|...+.++ +++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~-----~~v~ 265 (659)
T PTZ00153 191 NAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDK-----NTIK 265 (659)
T ss_pred ccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecC-----CeEE
Confidence 334679999999999999999888888888775 8999999999877 7777
Q ss_pred EEcCCceEEEecEEEEecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecC
Q psy9583 523 IINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602 (866)
Q Consensus 523 v~~~~g~~i~~d~lViATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~ 602 (866)
+. .++.++.||+||||||+.|..|++.+.+...++++++++.+...+++++|||||++|+|+|..|.++|.+||++++.
T Consensus 266 v~-~~g~~i~ad~lIIATGS~P~~P~~~~~~~~~V~ts~d~~~l~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~ 344 (659)
T PTZ00153 266 SE-KSGKEFKVKNIIIATGSTPNIPDNIEVDQKSVFTSDTAVKLEGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYS 344 (659)
T ss_pred Ec-cCCEEEECCEEEEcCCCCCCCCCCCCCCCCcEEehHHhhhhhhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 75 34578999999999999999877666666678999998888778999999999999999999999999999999999
Q ss_pred CcCCCcccHHHHHHHHHHH-HHcCCEEEeCceEEEEEEcCCe--EEEEEeeCC-CCcc------ceeEEEeccEEEEeec
Q psy9583 603 SNFLNTVDEEIAKKAFHLL-NKQGLNIILNTKIHDIKINKEN--VLINYSNKS-TNVK------TEIITSIFDKLLIAIG 672 (866)
Q Consensus 603 ~~~l~~~d~~~~~~l~~~l-~~~GV~i~~~~~v~~i~~~~~~--~~v~~~~~~-g~~~------~~~~~~~~D~vi~a~G 672 (866)
+++++.+|+++.+.+.+.+ +++||++++++.|++++.+++. +.+.+.... +... .+..++++|.|++|+|
T Consensus 345 ~~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG 424 (659)
T PTZ00153 345 PQLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG 424 (659)
T ss_pred CcccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEEC
Confidence 9999999999999999976 6799999999999999876543 444443111 1100 0123799999999999
Q ss_pred cccCCCCCCccccCeeecCCCcEEeCCCCCCC------CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC--------
Q psy9583 673 RIPNTNNLNIDKIGLKVNENNFIIVNDNCETN------IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ-------- 738 (866)
Q Consensus 673 ~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts------~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~-------- 738 (866)
++||++.|+++..+++++ +|+|.||++|||+ +|+|||+|||++.+++++.|.+||++|++||++.
T Consensus 425 r~Pnt~~L~l~~~gi~~~-~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~~~~~~~~~ 503 (659)
T PTZ00153 425 RKPNTNNLGLDKLKIQMK-RGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGKGKENVNIN 503 (659)
T ss_pred cccCCccCCchhcCCccc-CCEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCCCccccccc
Confidence 999999988888899887 5899999999997 6999999999999999999999999999999986
Q ss_pred -----CCCCCCCCccEEEEccCceeeeecCHHHHHhcCC--cEEEEEEecCCchhhhhcCC-------------------
Q psy9583 739 -----KHSINFNALPFVIYTFPEIASVGKTEQYLKKHNI--SYNVGIFPFLANSRARILGE------------------- 792 (866)
Q Consensus 739 -----~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~--~~~~~~~~~~~~~~~~~~~~------------------- 792 (866)
...++|..+|+++|++|++++||+||+||++.++ ++.+...++..+.++...++
T Consensus 504 ~~~~~~~~~~~~~iP~~ift~PeiA~VGlTE~eA~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~ 583 (659)
T PTZ00153 504 VENWASKPIIYKNIPSVCYTTPELAFIGLTEKEAKELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNT 583 (659)
T ss_pred cccccccccccCcCCEEEECcCceEEeeCCHHHHHhcCCCcceEEEEEEecccchhhhcccccccccccccccccccccc
Confidence 4456788999999999999999999999999884 46677778888888876544
Q ss_pred ---ceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhh
Q psy9583 793 ---TSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENR 862 (866)
Q Consensus 793 ---~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~ 862 (866)
+.||+|||+|+++++|||+|++|++|.|+|+.+++||++++|++||++++|+|||++|++.++++.+.+.
T Consensus 584 ~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~~~ 656 (659)
T PTZ00153 584 VDNTEGMVKIVYLKDTKEILGMFIVGSYASILIHEGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIAGV 656 (659)
T ss_pred ccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHHhh
Confidence 7899999999999999999999999999999999999999999999999999999999999999877653
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-67 Score=605.32 Aligned_cols=450 Identities=30% Similarity=0.528 Sum_probs=401.9
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
|||+||||||||++||.+|+++|++|+|||++ .+||+|+|.||+|+|.++..++..+.... . .+|+.....
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~-------~~GG~c~n~gciPsk~l~~~~~~~~~~~~-~-~~g~~~~~~ 71 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG-------PLGGTCVNVGCVPSKMLLRAAEVAHYARK-P-PFGGLAATV 71 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-------cccCCeeeecEEccHHHHHHHHHHHHhhc-c-CcccccCCC
Confidence 79999999999999999999999999999985 59999999999999999998888776654 2 366655556
Q ss_pred ccCHHHHHHHHHHHHHhhhh-hHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc-eEEEecEEEEecCCCCcCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNS-GILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~p~~~p 548 (866)
.++|.++..+.++....+.. .+..++++.+|+++.++..+.+. +++.+. ++ ..+.||+||||||+.|..|+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~-----~~v~v~--~g~~~~~~~~lIiATGs~p~~p~ 144 (463)
T TIGR02053 72 AVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDP-----KTVKVD--LGREVRGAKRFLIATGARPAIPP 144 (463)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccC-----CEEEEc--CCeEEEEeCEEEEcCCCCCCCCC
Confidence 78999999999888888765 46778889999999999988765 677763 33 46899999999999998776
Q ss_pred CCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEE
Q psy9583 549 GVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 628 (866)
.++.+...++++++++.....+++++|||+|.+|+|+|..|+++|.+|+++++.+++++.+++++...+++.|++.||++
T Consensus 145 i~G~~~~~~~~~~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i 224 (463)
T TIGR02053 145 IPGLKEAGYLTSEEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEV 224 (463)
T ss_pred CCCcccCceECchhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEE
Confidence 66555556788888887777789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCE
Q psy9583 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNI 708 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~V 708 (866)
+++++|++++.+++...+.+...++ ..++++|.|++|+|++|+.+.|.++..+++++++|+|.||++|||++|||
T Consensus 225 ~~~~~V~~i~~~~~~~~v~~~~~~~-----~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~V 299 (463)
T TIGR02053 225 VTSAQVKAVSVRGGGKIITVEKPGG-----QGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGI 299 (463)
T ss_pred EcCcEEEEEEEcCCEEEEEEEeCCC-----ceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCE
Confidence 9999999998776655555543222 13799999999999999999666788999999899999999999999999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCC-CCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhh
Q psy9583 709 YAIGDVVRGPMLAHKAEEEGIMVAEHISGQ-KHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRA 787 (866)
Q Consensus 709 yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~ 787 (866)
||+|||++.+.+++.|.+||++||.||++. ...+++..+|+++|++|+++++|+||++|++.|+++.+..+++..++++
T Consensus 300 yAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~ 379 (463)
T TIGR02053 300 YAAGDVTGGLQLEYVAAKEGVVAAENALGGANAKLDLLVIPRVVFTDPAVASVGLTEAEAQKAGIECDCRTLPLTNVPRA 379 (463)
T ss_pred EEeeecCCCcccHhHHHHHHHHHHHHhcCCCCCccCcCCCCeEEeccCceEEEeCCHHHHHhcCCCeEEEEEecccchHH
Confidence 999999999999999999999999999986 6667788899999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhh
Q psy9583 788 RILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIEN 861 (866)
Q Consensus 788 ~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~ 861 (866)
.+.+++.||+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.++++++.+..
T Consensus 380 ~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~~~a~~~~~~ 453 (463)
T TIGR02053 380 RINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGLKLAAQTFYR 453 (463)
T ss_pred HhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHHHHHHHHhhc
Confidence 98888899999999999999999999999999999999999999999999999999999999999999987643
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-67 Score=605.64 Aligned_cols=448 Identities=25% Similarity=0.404 Sum_probs=395.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+||++|||+|+||+++|.+|++.|.+|++||++ ..+||+|+|.||+|+|.++..++..+.... ...+|+....
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~------~~~GG~c~n~GciPsk~l~~~a~~~~~~~~-~~~~g~~~~~ 88 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGA------DVIGGCCVNVGCVPSKILIRAAQLAHQQRS-NPFDGVEAVA 88 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc------CcceeEeccccccccHHHHHHHHHHHHHhh-ccccCcccCC
Confidence 499999999999999999999999999999986 589999999999999999998887766544 3445666545
Q ss_pred cccCHHHHHHHHHHHHHhhhh-hHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCc
Q psy9583 470 VTLNLQKMLERKNNIIKKNNS-GILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKAR 545 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~ 545 (866)
..++|..+..+.+....++.. .+...++.. +|+++.|...+.+. +.+.|...++ .++.||+||||||+.|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~-----~~v~v~~~~g~~~~~~~d~lViATGs~p~ 163 (479)
T PRK14727 89 PSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDG-----NTLVVRLHDGGERVLAADRCLIATGSTPT 163 (479)
T ss_pred CccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecC-----CEEEEEeCCCceEEEEeCEEEEecCCCCC
Confidence 578899998888888777654 356666655 99999999999876 7788876554 47999999999999998
Q ss_pred CCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 546 SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 546 ~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
.|+.++.....+++..+.+.....+++++|||+|++|+|+|..|.++|.+|+++++. ++++.+|+++.+.+++.|++.|
T Consensus 164 ~p~i~G~~~~~~~~~~~~l~~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~l~~~L~~~G 242 (479)
T PRK14727 164 IPPIPGLMDTPYWTSTEALFSDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFREDPLLGETLTACFEKEG 242 (479)
T ss_pred CCCCCCcCccceecchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCcchHHHHHHHHHHHHhCC
Confidence 777665444456666666555567899999999999999999999999999999884 6788899999999999999999
Q ss_pred CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
|++++++++++++.+++.+.+... ++ ++++|.|++|+|+.||+.++.++.+|++++++|+|.||+++||++
T Consensus 243 V~i~~~~~V~~i~~~~~~~~v~~~--~g-------~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~ 313 (479)
T PRK14727 243 IEVLNNTQASLVEHDDNGFVLTTG--HG-------ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSA 313 (479)
T ss_pred CEEEcCcEEEEEEEeCCEEEEEEc--CC-------eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCC
Confidence 999999999999876665554432 33 688999999999999999877788899999899999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCch
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS 785 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~ 785 (866)
|+|||+|||++.+.+++.|..||++||.||++....+++...|+++|++|+++++|+||+||++.|+++.+..+++..++
T Consensus 314 ~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~ 393 (479)
T PRK14727 314 PDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGNATLDLSAMPAVIFTDPQVATVGLSEAKAHLSGIETISRVLTMENVP 393 (479)
T ss_pred CCEEEeeecCCcchhhhHHHHHHHHHHHHHcCCCcccccccCCcEEEecCceeeeeCCHHHHHHcCCceEEEEEEcccCc
Confidence 99999999999999999999999999999999877788888999999999999999999999999999999999999888
Q ss_pred hhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHh
Q psy9583 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI 859 (866)
Q Consensus 786 ~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~ 859 (866)
++...+.+.||+|||+|+++++|||+|++|+++.|+|+.+++||++++|++||.+++|+|||++|++.++++.+
T Consensus 394 ~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E~~~~~~~~~ 467 (479)
T PRK14727 394 RALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTMVEGLKLCAQTF 467 (479)
T ss_pred hhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCChHHHHHHHHHhh
Confidence 88777678999999999999999999999999999999999999999999999999999999999999998654
|
|
| >PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=602.69 Aligned_cols=373 Identities=35% Similarity=0.611 Sum_probs=321.3
Q ss_pred CccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 1 m~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
|+ ++++||++|++|+||+|++|+|++||.|++||+|++|||||+.++++||.+|+|.++++++|+.|++|++|+.++..
T Consensus 1 M~-~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~v~~G~~l~~i~~~ 79 (411)
T PRK11856 1 MM-FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDVVPVGSVIAVIEEE 79 (411)
T ss_pred CC-eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCEeCCCCEEEEEecC
Confidence 44 68999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred Cc-ccc-c----cc----cccc-c----ccc-c---------ccccccchhHHHhhhhCCCCcccccCCCCCCCceeehh
Q psy9583 81 IS-KLS-S----KT----EIKN-K----KDI-K---------NLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKED 135 (866)
Q Consensus 81 ~~-~~~-~----~~----~~~~-~----~~~-~---------~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~D 135 (866)
++ ..+ . .. .+.+ . +.. + .....+||++|++|+++||||+.| +||||+|||+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i-~gsG~~Gri~~~D 158 (411)
T PRK11856 80 GEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTV-KGSGPGGRITKED 158 (411)
T ss_pred CCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHC-cCCCCCCeEEHHH
Confidence 33 110 0 00 0000 0 000 0 001257999999999999999999 8999999999999
Q ss_pred HHhhhhhccccccccccccCCCccccccccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhh
Q psy9583 136 VLKVLSSIKNINEEKQEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYK 215 (866)
Q Consensus 136 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~ 215 (866)
|++|+......+.... .+.... .+......+.+|++++||.||++|++||.++||++++.++|+|+|+++|++++
T Consensus 159 v~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~~~ 233 (411)
T PRK11856 159 VEAAAAAAAPAAAAAA---AAAAAP--PAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLALRKQLK 233 (411)
T ss_pred HHHHHhcccccCCCCC---CCCCCC--CcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHHHH
Confidence 9999753211110000 000000 00011124678999999999999999999999999999999999999999986
Q ss_pred hHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeCCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHH
Q psy9583 216 DKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINE 295 (866)
Q Consensus 216 ~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~ 295 (866)
+. +.++||++||+||+++||++||+||++|+++++++++++|||+||++++||++|||++++++|+.+|++++++
T Consensus 234 ~~-----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~ 308 (411)
T PRK11856 234 AI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKD 308 (411)
T ss_pred hh-----ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHH
Confidence 43 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCccccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeeccccccccc
Q psy9583 296 FINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDG 375 (866)
Q Consensus 296 ~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg 375 (866)
+++++|+|+|.++|++||||||||+||+|..+|+|+|||||+|||++|++.++|++.+|++++|++|++++++|||++||
T Consensus 309 ~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g~~~~~~~m~lslt~DHRviDG 388 (411)
T PRK11856 309 LAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDG 388 (411)
T ss_pred HHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECCEEEEEEEEEEeEEeehhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred chhhhhhhhh
Q psy9583 376 REAVLSLMSF 385 (866)
Q Consensus 376 ~~a~~~~~~~ 385 (866)
.++++|+...
T Consensus 389 ~~aa~Fl~~l 398 (411)
T PRK11856 389 ADAARFLKAL 398 (411)
T ss_pred HHHHHHHHHH
Confidence 9999887643
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=603.19 Aligned_cols=448 Identities=27% Similarity=0.476 Sum_probs=393.4
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++|||+||||||||++||.+|++.|++|+|||++ .+||+|.|.||+|+|.++..++..+........+|++..
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-------~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~ 77 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-------TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQ 77 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-------ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccC
Confidence 4799999999999999999999999999999984 799999999999999999888877655442224577655
Q ss_pred ccccCHHHHHHHHHHHHHhhhhh-HHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSG-ILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKA 544 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p 544 (866)
...++|..++.+.++.+..+... +...++++ +|+++.+.+.+++. ..+.|...++ .++.||+||||||++|
T Consensus 78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~-----~~~~V~~~~g~~~~~~~d~lViATGs~p 152 (468)
T PRK14694 78 APVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE-----RTLTVTLNDGGEQTVHFDRAFIGTGARP 152 (468)
T ss_pred CCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecC-----CEEEEEecCCCeEEEECCEEEEeCCCCC
Confidence 56789999999998888777553 55556554 99999999888876 5566655444 5799999999999999
Q ss_pred cCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHc
Q psy9583 545 RSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~ 624 (866)
+.|+.++.+...++++.+...+...+++++|||+|++|+|+|..|+++|.+|+++++ +++++.+++++.+.+++.|++.
T Consensus 153 ~~p~i~G~~~~~~~~~~~~~~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~~~~~~~~~l~~~l~~~ 231 (468)
T PRK14694 153 AEPPVPGLAETPYLTSTSALELDHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQEDPAVGEAIEAAFRRE 231 (468)
T ss_pred CCCCCCCCCCCceEcchhhhchhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCCCCHHHHHHHHHHHHhC
Confidence 877766655555677777777767789999999999999999999999999999987 5778889999999999999999
Q ss_pred CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
||++++++.+.+++.+++.+.+.. ++. ++++|.|++|+|++||+.++.+++++++. ++|+|.||+++||+
T Consensus 232 GI~v~~~~~v~~i~~~~~~~~v~~---~~~------~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~~Ts 301 (468)
T PRK14694 232 GIEVLKQTQASEVDYNGREFILET---NAG------TLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHLQTT 301 (468)
T ss_pred CCEEEeCCEEEEEEEcCCEEEEEE---CCC------EEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCcccC
Confidence 999999999999987665544433 232 69999999999999999987777888886 47899999999999
Q ss_pred CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCc
Q psy9583 705 IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784 (866)
Q Consensus 705 ~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~ 784 (866)
+|+|||+|||++.+.+.+.|..||++||.||++....+++..+|.++|++|++++||+||+||++.|+++.+..+++...
T Consensus 302 ~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~ 381 (468)
T PRK14694 302 VSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGDASLDLSAMPEVIFTDPQVATVGLSEAEAQAQGYDTDSRTLDLENV 381 (468)
T ss_pred CCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCCcccccCCCCeEEECCCCeEEeeCCHHHHHHcCCceEEEEEecccc
Confidence 99999999999999999999999999999999887777888899999999999999999999999999999999999999
Q ss_pred hhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHh
Q psy9583 785 SRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI 859 (866)
Q Consensus 785 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~ 859 (866)
+++...+++.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++|+|||++|.+.++++.+
T Consensus 382 ~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~ 456 (468)
T PRK14694 382 PRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMVEGLKLCAQTF 456 (468)
T ss_pred hhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchHHHHHHHHHhh
Confidence 998887788999999999999999999999999999999999999999999999999999999999999888754
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-67 Score=603.94 Aligned_cols=443 Identities=28% Similarity=0.452 Sum_probs=385.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+|||||+||+.||..+++.|.+|+|||++ .+||+|+|+||+|+|.++..++..+...+ ...+|+...
T Consensus 48 ~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-------~~GGtCln~GCiPsK~l~~~a~~~~~~~~-~~~~Gi~~~- 118 (561)
T PTZ00058 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-------YLGGTCVNVGCVPKKIMFNAASIHDILEN-SRHYGFDTQ- 118 (561)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-------cccccccccCCCCCchhhhhcccHHHHHH-HHhcCCCcc-
Confidence 599999999999999999999999999999984 79999999999999999998887776654 566777633
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEE--------------------------
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQI-------------------------- 523 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v-------------------------- 523 (866)
..++|..+..+.+.++..+...+...+++.||+++.|++.+.++ +++.|
T Consensus 119 ~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~-----~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~ 193 (561)
T PTZ00058 119 FSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSE-----NQVLIKKVSQVDGEADESDDDEVTIVSAGVS 193 (561)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecC-----CEEEeeccccccccccccccccceeeeccce
Confidence 36899999999999999998888899999999999999998875 55442
Q ss_pred EcCCceEEEecEEEEecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 524 INKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 524 ~~~~g~~i~~d~lViATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
..+++.+++||+||||||++|..|+.++. ..++++++++.+.. +++++|||+|++|+|+|..|.++|++|+++++.+
T Consensus 194 ~~~~g~~i~ad~lVIATGS~P~~P~IpG~--~~v~ts~~~~~l~~-pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 194 QLDDGQVIEGKNILIAVGNKPIFPDVKGK--EFTISSDDFFKIKE-AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred ecCCCcEEECCEEEEecCCCCCCCCCCCc--eeEEEHHHHhhccC-CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 12355689999999999999987765543 24678888877655 8999999999999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCc
Q psy9583 604 NFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNI 682 (866)
Q Consensus 604 ~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l 682 (866)
++++.+|+++.+.+++.|+++||+++++..+.+++.+++ ++.+.+. ++. .++++|.|++|+|++||++.+.+
T Consensus 271 ~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~--~~~-----~~i~aD~VlvA~Gr~Pn~~~L~l 343 (561)
T PTZ00058 271 RLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLS--DGR-----KYEHFDYVIYCVGRSPNTEDLNL 343 (561)
T ss_pred cccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEEC--CCC-----EEEECCEEEECcCCCCCccccCc
Confidence 999999999999999999999999999999999987543 3444443 221 37999999999999999999877
Q ss_pred cccCeeecCCCcEEeCCCCCCCCCCEEEecccCC----------------------------------CCCcHHHHHHHH
Q psy9583 683 DKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVR----------------------------------GPMLAHKAEEEG 728 (866)
Q Consensus 683 ~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~----------------------------------~~~~~~~A~~~g 728 (866)
+..++.. ++|+|.||+++||++|||||+|||++ .+++++.|.+||
T Consensus 344 ~~~~~~~-~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g 422 (561)
T PTZ00058 344 KALNIKT-PKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAG 422 (561)
T ss_pred cccceec-CCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHH
Confidence 7777654 58999999999999999999999998 578999999999
Q ss_pred HHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhc-CC-cEEEEEEecCCchhhhhc----CCceEEEEEEE
Q psy9583 729 IMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKH-NI-SYNVGIFPFLANSRARIL----GETSGMVKILS 801 (866)
Q Consensus 729 ~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~~-~~~~~~~~~~~~~~~~~~----~~~~g~~kli~ 801 (866)
++||+||+|.. ...++..+|+++|++|+++++|+||+||++. |+ ++.+...++....++... +...||+|+++
T Consensus 423 ~~aa~ni~g~~~~~~~~~~ip~~vft~peiA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~ 502 (561)
T PTZ00058 423 RLLADRLFGPFSRTTNYKLIPSVIFSHPPIGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYLKLVC 502 (561)
T ss_pred HHHHHHHhCCCCcccCCCCCCeEEeCCchheeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEEEEEE
Confidence 99999999863 3456788999999999999999999999987 65 577777788777776543 24679999999
Q ss_pred ECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHH
Q psy9583 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAM 857 (866)
Q Consensus 802 ~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~ 857 (866)
++++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|++..++.
T Consensus 503 ~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~ 558 (561)
T PTZ00058 503 VGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAP 558 (561)
T ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999987764
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-67 Score=598.54 Aligned_cols=456 Identities=24% Similarity=0.399 Sum_probs=394.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC-CC-cccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK-DN-EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~-~~-~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+||++|||+||||+.||.++++.|.+|++||+.. .+ .....+||+|+|.||+|+|.++..++..+.... ...+|+..
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~ 80 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKD-SRNYGWNV 80 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhh-hhhcCccc
Confidence 4899999999999999999999999999999741 00 111258999999999999999999888776654 55667765
Q ss_pred cc-cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCC
Q psy9583 468 QN-VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKA 544 (866)
Q Consensus 468 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p 544 (866)
.. ..++|.++..+.+..+..+...+..+++..+|+++.|...++++ +++.+...++ .++.||+||||||++|
T Consensus 81 ~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~-----~~v~v~~~~g~~~~~~~d~lVIATGs~p 155 (484)
T TIGR01438 81 EETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK-----HRIKATNKKGKEKIYSAERFLIATGERP 155 (484)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC-----CEEEEeccCCCceEEEeCEEEEecCCCC
Confidence 44 57899999999999999998888889999999999999999887 7888864333 5799999999999999
Q ss_pred cCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHc
Q psy9583 545 RSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~ 624 (866)
+.|+.++.. ...+++++++.+...+++++|||||++|+|+|..|+++|.+|+++.+ +.+++.+|+++.+.+++.|+++
T Consensus 156 ~~p~ipG~~-~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~L~~~ 233 (484)
T TIGR01438 156 RYPGIPGAK-ELCITSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDCANKVGEHMEEH 233 (484)
T ss_pred CCCCCCCcc-ceeecHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-cccccccCHHHHHHHHHHHHHc
Confidence 877655432 34578888888777889999999999999999999999999999998 5788999999999999999999
Q ss_pred CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecC-CCcEEeCCCCCC
Q psy9583 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE-NNFIIVNDNCET 703 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~Vd~~l~T 703 (866)
||++++++.+.+++..++.+.+.+. ++. +..++++|.|++|+|++||++++.+++.|+++++ +|+|.||+++||
T Consensus 234 gV~i~~~~~v~~v~~~~~~~~v~~~--~~~---~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~~T 308 (484)
T TIGR01438 234 GVKFKRQFVPIKVEQIEAKVKVTFT--DST---NGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQT 308 (484)
T ss_pred CCEEEeCceEEEEEEcCCeEEEEEe--cCC---cceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCccc
Confidence 9999999999999876666666664 221 0137999999999999999999888999999975 489999999999
Q ss_pred CCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhc-CC-cEEEEEE
Q psy9583 704 NIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKH-NI-SYNVGIF 779 (866)
Q Consensus 704 s~~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~~-~~~~~~~ 779 (866)
++|+|||+|||+. .+++++.|.+||+++|+||++.. ...++..+|+++|++|++++||+||+||++. ++ .+.+...
T Consensus 309 s~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~i~~~p~ia~vGlte~~a~~~~g~~~~~~~~~ 388 (484)
T TIGR01438 309 NVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSGSTVICDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVFHS 388 (484)
T ss_pred CCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcCCCcccccccCCeEEeCCCceeeecCCHHHHHHhcCCCcEEEEEe
Confidence 9999999999996 67899999999999999999753 3456778999999999999999999999987 55 5777777
Q ss_pred ecCCchhhhhcCC--ceEEEEEEEE-CCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHH
Q psy9583 780 PFLANSRARILGE--TSGMVKILSD-MKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856 (866)
Q Consensus 780 ~~~~~~~~~~~~~--~~g~~kli~~-~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 856 (866)
++....++....+ +.+|+|++++ +++++|||+|++|++|.|+|+.+++||++++|++||++++|+|||++|++.+++
T Consensus 389 ~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~t~~dl~~~~~~hPt~sE~~~~~~ 468 (484)
T TIGR01438 389 YFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGLTKKDLDNTIGIHPVCAEVFTTLS 468 (484)
T ss_pred ecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhhhcCCCChHHHHHHhh
Confidence 8877777766554 6799999996 468999999999999999999999999999999999999999999999999988
Q ss_pred HH
Q psy9583 857 MS 858 (866)
Q Consensus 857 ~~ 858 (866)
+.
T Consensus 469 ~~ 470 (484)
T TIGR01438 469 VT 470 (484)
T ss_pred hh
Confidence 66
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=598.34 Aligned_cols=452 Identities=39% Similarity=0.629 Sum_probs=399.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+||||||||++||.+|++.|++|+|||++ .+||+|.+.||+|+|.++..+...+.... +..+|+....
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-------~~GG~~~~~gc~psk~l~~~~~~~~~~~~-~~~~gi~~~~ 74 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG-------PLGGTCLNVGCIPSKALIAAAEAFHEAKH-AEEFGIHADG 74 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-------ccccceeccceeeHHHHHHHHHHHHHHHH-HHhcCCCcCC
Confidence 599999999999999999999999999999984 79999999999999999998888776655 5667776554
Q ss_pred cccCHHHHHHHHHHHHHhhhhhH-HHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGI-LFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARSF 547 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~~ 547 (866)
..++|..+..+.+.....+...+ ...++..+++++.+...+++. +.+.+ ++.++.||+||||||+. |..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~v~v---~~~~~~~d~lIiATGs~~p~i- 145 (460)
T PRK06292 75 PKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP-----NTVEV---NGERIEAKNIVIATGSRVPPI- 145 (460)
T ss_pred CccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC-----CEEEE---CcEEEEeCEEEEeCCCCCCCC-
Confidence 67899999999888888777666 667788899999999888766 66666 45789999999999998 543
Q ss_pred CCCc-CCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 548 PGVK-FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 548 p~~~-~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
|+.. .....++++++.+.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++...+++.|+++ |
T Consensus 146 pg~~~~~~~~~~~~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I 224 (460)
T PRK06292 146 PGVWLILGDRLLTSDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-F 224 (460)
T ss_pred CCCcccCCCcEECchHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-c
Confidence 3321 1344577888888777789999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEeCceEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
++++++.+.+++.+++ .+.+... ++. ..++++|.+++|+|++||++.+.++.++++++++|+|.||+++||++
T Consensus 225 ~i~~~~~v~~i~~~~~~~v~~~~~--~~~----~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~ 298 (460)
T PRK06292 225 KIKLGAKVTSVEKSGDEKVEELEK--GGK----TETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSV 298 (460)
T ss_pred EEEcCCEEEEEEEcCCceEEEEEc--CCc----eEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCC
Confidence 9999999999987654 3443322 232 24799999999999999999877888999999899999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC-CCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCc
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ-KHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~ 784 (866)
|+|||+|||++.+++++.|..||++||.||++. ...+++..+|+.+|++|+++++|+||+||++.|+++.+..+++..+
T Consensus 299 ~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~~~~~~~~~~~~ 378 (460)
T PRK06292 299 PGIYAAGDVNGKPPLLHEAADEGRIAAENAAGDVAGGVRYHPIPSVVFTDPQIASVGLTEEELKAAGIDYVVGEVPFEAQ 378 (460)
T ss_pred CCEEEEEecCCCccchhHHHHHHHHHHHHhcCCCCCCcCCCCCCeEEECCCccEEeECCHHHHHhcCCCeEEEEEecccc
Confidence 999999999998899999999999999999984 4556778899999999999999999999999999999999999999
Q ss_pred hhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhcc
Q psy9583 785 SRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864 (866)
Q Consensus 785 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~ 864 (866)
.|+.+.+++.||+||++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++|+|||++|++.++++.+..+.+
T Consensus 379 ~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~ 458 (460)
T PRK06292 379 GRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLSEGLRTALRDLFSKLI 458 (460)
T ss_pred hHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHHHHHHHHhhhhc
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999988776654
Q ss_pred C
Q psy9583 865 N 865 (866)
Q Consensus 865 ~ 865 (866)
+
T Consensus 459 ~ 459 (460)
T PRK06292 459 H 459 (460)
T ss_pred C
Confidence 3
|
|
| >KOG0559|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-70 Score=546.98 Aligned_cols=362 Identities=46% Similarity=0.710 Sum_probs=294.8
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
.+++..|.++|+++||+|.+|++++||.|+++|.|++|||||.+++|+||.+|+|.++++++||+|.+|+.|+.|+...+
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdtV~~g~~la~i~~gaA 151 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDTVTPGQKLAKISPGAA 151 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCcccCCceeEEecCCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred cccccccccccccccccccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhhccccccc--------ccccc
Q psy9583 83 KLSSKTEIKNKKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEE--------KQEKY 154 (866)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~~~~~~~~--------~~~~~ 154 (866)
.+.+....++++.++..+..++|. +-+.+ + . +-.++ .+ .++.+..+.. ++...
T Consensus 152 pa~~~~~apa~~~pk~~~a~~a~p--~~~s~---~---~-p~~~a-------pv---~e~p~~p~~~~P~~~~a~k~~v~ 212 (457)
T KOG0559|consen 152 PAKGGASAPAKAEPKTAPAAAAPP--KPSSK---P---P-PKEAA-------PV---AESPPAPSSPEPVPASAKKPSVA 212 (457)
T ss_pred CccccccCCCccCCCCCCCCCCCC--CccCC---C---C-ccccC-------CC---CCCCCCCCCCCCCCccccCcccc
Confidence 222111111100110000001100 00000 0 0 00000 00 0000000000 00000
Q ss_pred CCCccccccccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHH
Q psy9583 155 KPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVK 234 (866)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~k 234 (866)
.+...+......++.+.+++|++||+.||.++.+|.++...+|.|.|+||++|+++|++++++|-+++|+|+.|+.+|+|
T Consensus 213 ~~~~~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mRk~ykdaf~kKhGvKlGfMs~F~K 292 (457)
T KOG0559|consen 213 QPKPPPSEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMRKQYKDAFLKKHGVKLGFMSGFSK 292 (457)
T ss_pred CCCCCcccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhCceeeehhHHHH
Confidence 01111111111245678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCccceEEeCCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCce
Q psy9583 235 AVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGT 314 (866)
Q Consensus 235 a~~~al~~~P~~n~~~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt 314 (866)
|++.||++.|.+|+.+||+.|++++.+||+|||+|++||+||||||++.|++.||-.++..|..|||+|+|.-+||.|||
T Consensus 293 A~~~Alq~qPvVNavIdg~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~g~laiedM~gGT 372 (457)
T KOG0559|consen 293 AAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARDGKLAIEDMAGGT 372 (457)
T ss_pred HHHHHhhhCcceeeeecCCeeEEeecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhccCceeeeeccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhh
Q psy9583 315 FTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLM 383 (866)
Q Consensus 315 ~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~ 383 (866)
|||||-|.||..+.||||||||+||||+.+|.+||++.+|++++||+||+.|+||||++||+++..|+.
T Consensus 373 FTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr 441 (457)
T KOG0559|consen 373 FTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLR 441 (457)
T ss_pred EEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCCEeeeccceEEEeeccccccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987764
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-66 Score=608.24 Aligned_cols=448 Identities=27% Similarity=0.442 Sum_probs=393.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.|||+||||||||++||.+|++.|++|+|||++ .+||+|+|.||+|+|.++..++..+........+|+....
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-------~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~ 170 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-------TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATV 170 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-------cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCC
Confidence 599999999999999999999999999999984 7999999999999999998888776654421124665445
Q ss_pred cccCHHHHHHHHHHHHHhhhh-hHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCc
Q psy9583 470 VTLNLQKMLERKNNIIKKNNS-GILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKAR 545 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~ 545 (866)
...+|.++..+.+..+..+.. .+...+++. +|+++.+.+.+.+. +.+.+...++ ..+.||+||||||++|.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~v~~~~g~~~~~~~d~lviAtGs~p~ 245 (561)
T PRK13748 171 PTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDD-----QTLIVRLNDGGERVVAFDRCLIATGASPA 245 (561)
T ss_pred CccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecC-----CEEEEEeCCCceEEEEcCEEEEcCCCCCC
Confidence 568999999988888877765 355666666 89999999988876 7777765444 47999999999999998
Q ss_pred CCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 546 SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 546 ~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
.|+.++.....+++..+.+.....+++++|||+|++|+|+|..|.++|.+|+++++. .+++.+|+++...+++.|++.|
T Consensus 246 ~p~i~g~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~~d~~~~~~l~~~l~~~g 324 (561)
T PRK13748 246 VPPIPGLKETPYWTSTEALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFREDPAIGEAVTAAFRAEG 324 (561)
T ss_pred CCCCCCCCccceEccHHHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccccCHHHHHHHHHHHHHCC
Confidence 776665554456776666666667899999999999999999999999999999985 5677789999999999999999
Q ss_pred CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
|++++++.+++++.+++.+.+... ++ ++++|.|++|+|++||+.++.+++.|++++++|+|.||+++||++
T Consensus 325 I~i~~~~~v~~i~~~~~~~~v~~~--~~-------~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~ 395 (561)
T PRK13748 325 IEVLEHTQASQVAHVDGEFVLTTG--HG-------ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSV 395 (561)
T ss_pred CEEEcCCEEEEEEecCCEEEEEec--CC-------eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCC
Confidence 999999999999876655544332 22 689999999999999999877789999999899999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCch
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS 785 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~ 785 (866)
|||||+|||++.+.+++.|..||++||.||+|....+++...|+++|++|+++++|+||+||++.|+++.+..+++....
T Consensus 396 ~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~ 475 (561)
T PRK13748 396 PHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVP 475 (561)
T ss_pred CCEEEeeecCCCccchhHHHHHHHHHHHHHcCCCcccCCCCCCeEEEccCCceeeeCCHHHHHHcCCCeEEEEEecccCc
Confidence 99999999999999999999999999999998777788888999999999999999999999999999999999998888
Q ss_pred hhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHh
Q psy9583 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI 859 (866)
Q Consensus 786 ~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~ 859 (866)
++...+++.||+||++|+++++|||+|++|+++.|+|+.+++||++++|++||..++|+|||++|.+.++++..
T Consensus 476 ~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~~~~ 549 (561)
T PRK13748 476 RALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTF 549 (561)
T ss_pred hhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCchHHHHHHHHHHh
Confidence 88777678999999999999999999999999999999999999999999999999999999999999988654
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=585.19 Aligned_cols=432 Identities=28% Similarity=0.483 Sum_probs=376.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.|||+||||||||++||.+|+++|++|+|||+.+ ..+||+|.+.||+|+|.+......
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~-----~~~GG~~~~~gcip~k~l~~~~~~----------------- 60 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN-----AMYGGTCINIGCIPTKTLVHDAQQ----------------- 60 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC-----CccceeEeeccccchHHHHHHhcc-----------------
Confidence 5999999999999999999999999999999862 258999999999999877643321
Q ss_pred cccCHHHHHHHHHHHHHhhhhhH-HHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc-eEEEecEEEEecCCCCcCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGI-LFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARSF 547 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~p~~~ 547 (866)
..+|.....+.+..+..+.... ..+.+..+++++.+...+++. +.+.+.+.++ .++.||+||||||++|..|
T Consensus 61 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~-----~~~~v~~~~g~~~~~~d~lviATGs~p~~p 134 (441)
T PRK08010 61 -HTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINN-----HSLRVHRPEGNLEIHGEKIFINTGAQTVVP 134 (441)
T ss_pred -CCCHHHHHHHHHHHHHHHHHhHHHHHhhcCCcEEEEEEEEEecC-----CEEEEEeCCCeEEEEeCEEEEcCCCcCCCC
Confidence 2467776766666655554333 333344599999999888876 7777776566 4799999999999999877
Q ss_pred CCCcCC-CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 548 PGVKFD-ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 548 p~~~~~-~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
+.++.. ...++++.+++.+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|+++||
T Consensus 135 ~i~G~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV 214 (441)
T PRK08010 135 PIPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGV 214 (441)
T ss_pred CCCCccCCCCEEChhHhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCC
Confidence 655532 2457788878777778899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIP 706 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~ 706 (866)
++++++.+++++.+++.+.+.. .++ ++.+|.|++|+|++||++++.++++|++++++|+|.||+++||++|
T Consensus 215 ~v~~~~~v~~i~~~~~~v~v~~--~~g-------~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~ 285 (441)
T PRK08010 215 DIILNAHVERISHHENQVQVHS--EHA-------QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTAD 285 (441)
T ss_pred EEEeCCEEEEEEEcCCEEEEEE--cCC-------eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCC
Confidence 9999999999987665554433 233 5789999999999999998777889999988899999999999999
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhCC-CC-CCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCc
Q psy9583 707 NIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ-KH-SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784 (866)
Q Consensus 707 ~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~-~~-~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~ 784 (866)
||||+|||++.+++.+.|..||+++++||+|. .. ..++..+|+++|++|+++++|+||+||++.|+++.+..+++...
T Consensus 286 ~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~ 365 (441)
T PRK08010 286 NIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAI 365 (441)
T ss_pred CEEEeeecCCCccchhHHHHHHHHHHHHHcCCCCcccCccCCCCEEEECCCCceeeeCCHHHHHHcCCCeEEEEEecCcC
Confidence 99999999999999999999999999999985 32 34667899999999999999999999999999999999999999
Q ss_pred hhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHH
Q psy9583 785 SRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMS 858 (866)
Q Consensus 785 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~ 858 (866)
+++.+.+++.||+||++|+++++|||+|++|+++.|+|+.++++|++++|++||.+.+++|||++|.+.+++..
T Consensus 366 ~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 439 (441)
T PRK08010 366 PRARVMNDTRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSL 439 (441)
T ss_pred hhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHHh
Confidence 99999888899999999999999999999999999999999999999999999999999999999999988764
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-65 Score=583.90 Aligned_cols=454 Identities=47% Similarity=0.786 Sum_probs=409.5
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
|||+||||||||++||.+|++.|++|+|||+ +.+||+|.+.||+|+|.+....+.++.+.. ...+++.....
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-------~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~-~~~~g~~~~~~ 73 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-------EYLGGTCLNVGCIPTKALLHSAEVYDEIKH-AKDYGIEVENV 73 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-------CCCCCceeecCccchHHHHHHhhHHHHHHH-HHhcCCCCCCC
Confidence 8999999999999999999999999999998 379999999999999999998888877764 66777765556
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc-eEEEecEEEEecCCCCcCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~p~~~p~ 549 (866)
.++|..+..+.+...+++...+..++++.+++++.++..+.+. +.+.+...++ .++.||+||||||+.|+.+|+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~ 148 (461)
T TIGR01350 74 SVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDP-----GTVLVTGENGEETLTAKNIIIATGSRPRSLPG 148 (461)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC-----CEEEEecCCCcEEEEeCEEEEcCCCCCCCCCC
Confidence 7899999999888888888888889999999999999988766 7777876544 589999999999999987776
Q ss_pred C-cCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEE
Q psy9583 550 V-KFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 550 ~-~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 628 (866)
+ +.....++++++...+...+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++.+++++...+.+.|++.||++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i 228 (461)
T TIGR01350 149 PFDFDGEVVITSTGALNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKI 228 (461)
T ss_pred CCCCCCceEEcchHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 3 545556888888888777889999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCE
Q psy9583 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNI 708 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~V 708 (866)
++++.+.+++.+++++.+... +|. ..++++|.+++|+|++|+...+.+++.+++++.+|+|.||+++||++|+|
T Consensus 229 ~~~~~v~~i~~~~~~v~v~~~--~g~----~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~I 302 (461)
T TIGR01350 229 LTNTKVTAVEKNDDQVVYENK--GGE----TETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGI 302 (461)
T ss_pred EeCCEEEEEEEeCCEEEEEEe--CCc----EEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCE
Confidence 999999999877666665543 342 23799999999999999998655788999999899999999999999999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCC-CCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhh
Q psy9583 709 YAIGDVVRGPMLAHKAEEEGIMVAEHISGQKH-SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRA 787 (866)
Q Consensus 709 yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~ 787 (866)
||+|||++.+++++.|.+||+.||+||++... .+++...|.+.|++|+++++|+++++|++.|+++.+...++....++
T Consensus 303 yaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~~~~~~~ 382 (461)
T TIGR01350 303 YAIGDVIGGPMLAHVASHEGIVAAENIAGKEPAPIDYDAVPSCIYTDPEVASVGLTEEQAKEAGYDVKIGKFPFAANGKA 382 (461)
T ss_pred EEeeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeEEecCCceEEEeCCHHHHHhCCCCeEEEEEeCccchHH
Confidence 99999999899999999999999999998754 67778899999999999999999999999999999999999888899
Q ss_pred hhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhc
Q psy9583 788 RILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRS 863 (866)
Q Consensus 788 ~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~ 863 (866)
.+.+.+.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.++++++.++.+.
T Consensus 383 ~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~~~~~~~~~~~~~ 458 (461)
T TIGR01350 383 LALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEAIKEAALAALGKP 458 (461)
T ss_pred HhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHHHHHHHHHhccCc
Confidence 8888889999999999999999999999999999999999999999999999999999999999999998775543
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-65 Score=584.12 Aligned_cols=453 Identities=28% Similarity=0.439 Sum_probs=382.4
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCC--CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD--NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYG 464 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~--~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~g 464 (866)
|+.+|||+||||||||++||.+|+++|.+|+|||+.+. ......+||+|+|.||+|+|.++..+...+...+....+|
T Consensus 2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 33359999999999999999999999999999996310 0011258999999999999999988888776654345677
Q ss_pred ccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCC-ceEEEecEEEEecCCC
Q psy9583 465 INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKT-KETITAKYIIIATGSK 543 (866)
Q Consensus 465 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~-g~~i~~d~lViATGs~ 543 (866)
+.... ..+|.++..+.+..++.+...+...++..+|+++.+.+.+.+. +++.+...+ +..+.||+||||||+.
T Consensus 82 ~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~-----~~v~v~~~~~~~~i~~d~lIIATGs~ 155 (499)
T PTZ00052 82 WKTSS-SFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDE-----HTVSYGDNSQEETITAKYILIATGGR 155 (499)
T ss_pred CCCCC-CcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccC-----CEEEEeeCCCceEEECCEEEEecCCC
Confidence 76544 7899999999999988887777777888899999999988766 778775432 3679999999999999
Q ss_pred CcCCC-CCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHH
Q psy9583 544 ARSFP-GVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622 (866)
Q Consensus 544 p~~~p-~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~ 622 (866)
|+.|+ .++. ....+++++++.+...+++++|||+|++|+|+|..|+++|.+||++++ +.+++.+|+++.+.+++.|+
T Consensus 156 p~~p~~i~G~-~~~~~~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~~~d~~~~~~l~~~l~ 233 (499)
T PTZ00052 156 PSIPEDVPGA-KEYSITSDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVR-SIPLRGFDRQCSEKVVEYMK 233 (499)
T ss_pred CCCCCCCCCc-cceeecHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEc-CcccccCCHHHHHHHHHHHH
Confidence 98664 3332 234578888887777789999999999999999999999999999987 46778899999999999999
Q ss_pred HcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCC
Q psy9583 623 KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE 702 (866)
Q Consensus 623 ~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~ 702 (866)
+.||++++++.+.+++..++.+.+.+. +|. ++++|.|++++|++||++++.++.++++++++|++.++++ +
T Consensus 234 ~~GV~i~~~~~v~~v~~~~~~~~v~~~--~g~------~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~ 304 (499)
T PTZ00052 234 EQGTLFLEGVVPINIEKMDDKIKVLFS--DGT------TELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-C 304 (499)
T ss_pred HcCCEEEcCCeEEEEEEcCCeEEEEEC--CCC------EEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-c
Confidence 999999999999999876555555553 555 6899999999999999999877899999998998877777 9
Q ss_pred CCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhc-C-CcEEEEE
Q psy9583 703 TNIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKH-N-ISYNVGI 778 (866)
Q Consensus 703 Ts~~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~-~~~~~~~ 778 (866)
|++|+|||+|||++ .+.+++.|.+||+++|+||++.. ...++..+|+++|++|++++||+||+||++. + .++.+..
T Consensus 305 Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~ift~p~ia~vGlte~~A~~~~~~~~~~~~~ 384 (499)
T PTZ00052 305 TNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQSNEFIDYTFIPTTIFTPIEYGACGYSSEAAIAKYGEDDIEEYL 384 (499)
T ss_pred CCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCCCCcCccccCCeEEecCCcceeecCCHHHHHHhcCCCCEEEEE
Confidence 99999999999995 67899999999999999999854 3456788999999999999999999999988 4 4688877
Q ss_pred EecCCchhhhhcC---------------CceEEEEEEEEC-CCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHcccc
Q psy9583 779 FPFLANSRARILG---------------ETSGMVKILSDM-KSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARIC 842 (866)
Q Consensus 779 ~~~~~~~~~~~~~---------------~~~g~~kli~~~-~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~ 842 (866)
.++....++.... ++.||+||++++ ++++|||+|++|++|+|+|+.+++||++++|++||++++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~~ 464 (499)
T PTZ00052 385 QEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGFSLALKLGAKKSDFDSMI 464 (499)
T ss_pred eecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccc
Confidence 7776544333211 268999999997 489999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHH
Q psy9583 843 HVHPSLSEAMKEAA 856 (866)
Q Consensus 843 ~~~Pt~~e~~~~~~ 856 (866)
|+|||++|++.++.
T Consensus 465 ~~hPt~sE~~~~~~ 478 (499)
T PTZ00052 465 GIHPTDAEVFMNLS 478 (499)
T ss_pred ccCCCCchhhEEEE
Confidence 99999999987554
|
|
| >KOG0405|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=516.36 Aligned_cols=443 Identities=28% Similarity=0.457 Sum_probs=399.2
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc-
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT- 467 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~- 467 (866)
+.||++|||||.+|+++|+++++.|.++.|+|.. ..+||+|.+.||+|.|.+++.+...+.+.+ ...||++.
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~------f~lGGTCVn~GCVPKKvm~~~a~~~~~~~d-a~~yG~~~~ 91 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELP------FGLGGTCVNVGCVPKKVMWYAADYSEEMED-AKDYGFPIN 91 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecC------CCcCceEEeeccccceeEEehhhhhHHhhh-hhhcCCccc
Confidence 4699999999999999999999999999999985 589999999999999999999988887776 77889987
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCc
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKAR 545 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~ 545 (866)
....++|..+.+.++.++.+++..++..+.+.+|+++.|+..+.++ ..++|...++ ..|++++++||||++|.
T Consensus 92 ~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~-----~~v~V~~~d~~~~~Ytak~iLIAtGg~p~ 166 (478)
T KOG0405|consen 92 EEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSP-----GEVEVEVNDGTKIVYTAKHILIATGGRPI 166 (478)
T ss_pred cccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCC-----CceEEEecCCeeEEEecceEEEEeCCccC
Confidence 5678999999999999999999999999999999999999999887 7777765555 45889999999999998
Q ss_pred CCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 546 SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 546 ~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
.|.+++ ..+-++++.++++.+.|+|++|+|+|++|+|+|..|+.+|++++++.|.+.+|+.||+.+++.+.+.|+..|
T Consensus 167 ~PnIpG--~E~gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~g 244 (478)
T KOG0405|consen 167 IPNIPG--AELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRG 244 (478)
T ss_pred CCCCCc--hhhccccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcc
Confidence 775443 345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
|++|.++.++++....++....... .+. ...+|.++||+|+.||+..|++++.|++++.+|.|.||+|.+||+
T Consensus 245 invh~~s~~~~v~K~~~g~~~~i~~-~~~------i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnv 317 (478)
T KOG0405|consen 245 INVHKNSSVTKVIKTDDGLELVITS-HGT------IEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNV 317 (478)
T ss_pred eeecccccceeeeecCCCceEEEEe-ccc------cccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCC
Confidence 9999999999998877665444432 332 556999999999999999999999999999999999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhC--CCCCCCCCCccEEEEccCceeeeecCHHHHHhcC--CcEEEEEEec
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG--QKHSINFNALPFVIYTFPEIASVGKTEQYLKKHN--ISYNVGIFPF 781 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g--~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~--~~~~~~~~~~ 781 (866)
|+||++||+++...+...|+..|+..++.+++ ++.+.+|..+|.++|+.|+++.|||||+||.++. -++.+....|
T Consensus 318 p~I~avGDv~gk~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F 397 (478)
T KOG0405|consen 318 PSIWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKF 397 (478)
T ss_pred CceEEeccccCcEecchHHHhhhhhHHHHhhcCCCCCccccccCceEEEecCCcccccCCHHHHHHHhCccceEEEecCC
Confidence 99999999999999999999999999999997 4577899999999999999999999999998874 4566655445
Q ss_pred CCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHH
Q psy9583 782 LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAM 852 (866)
Q Consensus 782 ~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~ 852 (866)
..+..+......+.++||++..++.+++|+|++|+.+.|+++-++.|+++|+|..|+.+...+|||.+|.|
T Consensus 398 ~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEEl 468 (478)
T KOG0405|consen 398 NPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEEL 468 (478)
T ss_pred chhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeecCCCHHHh
Confidence 54545444455689999999999999999999999999999999999999999999999999999999986
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-64 Score=573.13 Aligned_cols=430 Identities=28% Similarity=0.503 Sum_probs=379.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+||||||||++||..|+++|++|+|||+++ ..+||+|.+.||+|+|.++...+.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~-----~~~GG~c~~~gciP~k~~~~~~~~----------------- 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK-----AMYGGTCINIGCIPTKTLLVAAEK----------------- 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC-----cccceeeecCccccchHhhhhhhc-----------------
Confidence 5999999999999999999999999999999962 137999999999999988765431
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCC-ceEEEecEEEEecCCCCcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKT-KETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~-g~~i~~d~lViATGs~p~~~p 548 (866)
..+|..+..+.+....++.......+.+.+|+++.++..+.+. +++.+...+ ...+.||+||||||++|+.|+
T Consensus 61 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~~~~~~~-----~~v~v~~~~~~~~~~~d~vViATGs~~~~p~ 134 (438)
T PRK07251 61 -NLSFEQVMATKNTVTSRLRGKNYAMLAGSGVDLYDAEAHFVSN-----KVIEVQAGDEKIELTAETIVINTGAVSNVLP 134 (438)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC-----CEEEEeeCCCcEEEEcCEEEEeCCCCCCCCC
Confidence 2467777777777777776666677888999999999888755 777776432 357999999999999998776
Q ss_pred CCcCC-CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCE
Q psy9583 549 GVKFD-ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627 (866)
Q Consensus 549 ~~~~~-~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~ 627 (866)
.++.. ...++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++...+.+.|+++||+
T Consensus 135 i~G~~~~~~v~~~~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~ 214 (438)
T PRK07251 135 IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGIT 214 (438)
T ss_pred CCCcCCCCcEEchHHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCE
Confidence 55542 34578888888877789999999999999999999999999999999999999989999999999999999999
Q ss_pred EEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCC
Q psy9583 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707 (866)
Q Consensus 628 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~ 707 (866)
+++++++++++.+++.+.+.. ++. ++++|.+++|+|++|+.+.+.+++.++.++.+|+|.||+++||++||
T Consensus 215 i~~~~~V~~i~~~~~~v~v~~---~g~------~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~ 285 (438)
T PRK07251 215 FLLNAHTTEVKNDGDQVLVVT---EDE------TYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPG 285 (438)
T ss_pred EEcCCEEEEEEecCCEEEEEE---CCe------EEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCC
Confidence 999999999987655554432 343 79999999999999999987778888988888999999999999999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCCCC--CCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCch
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKH--SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS 785 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~--~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~ 785 (866)
|||+|||++.+++.+.|..+|++++.++++... ..++..+|+++|++|+++++|+||+||++.|+++.+..+++...+
T Consensus 286 IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~ 365 (438)
T PRK07251 286 VFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITPPLSQVGLTEKEAKEAGLPYAVKELLVAAMP 365 (438)
T ss_pred EEEeeecCCCcccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCCceEeeeCCHHHHHhcCCCeEEEEEECCcch
Confidence 999999999999999999999999999987643 235678999999999999999999999999999999999999999
Q ss_pred hhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHH
Q psy9583 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856 (866)
Q Consensus 786 ~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 856 (866)
++.+.++..||+||++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|.+.++.
T Consensus 366 ~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 366 RAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred hhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 99888888999999999999999999999999999999999999999999999999999999999998765
|
|
| >PRK14843 dihydrolipoamide acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-65 Score=545.56 Aligned_cols=285 Identities=32% Similarity=0.499 Sum_probs=248.8
Q ss_pred cccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhhccccccccccccCCCcccccc-ccCCCccccccCch
Q psy9583 99 LNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQEKYKPYLDSISI-KNNSRLEECVPMSR 177 (866)
Q Consensus 99 ~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 177 (866)
...++||+||+||+|+||||+.| +||||+|||+++||++|+......+...++...+.....+. .......+.+|+++
T Consensus 47 ~~~~asP~aR~lA~e~gidl~~v-~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~ 125 (347)
T PRK14843 47 NVVRISPLAKRIALEHNIAWQEI-QGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTP 125 (347)
T ss_pred ccccCCchhhHHHHHcCCCHhhC-CCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCcH
Confidence 34568999999999999999999 89999999999999999743211110000000000000000 00111245689999
Q ss_pred hHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeC--Cee
Q psy9583 178 LRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDG--NNI 255 (866)
Q Consensus 178 ~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~--~~~ 255 (866)
|||.||++|++||+++||+|++.++|+++|+++|+++++.+.+..|.++|+++||+||++.||++||.||++|++ +.+
T Consensus 126 ~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i 205 (347)
T PRK14843 126 MRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTI 205 (347)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeE
Confidence 999999999999999999999999999999999999997766666899999999999999999999999999984 579
Q ss_pred EEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccccccCCC
Q psy9583 256 IYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPP 335 (866)
Q Consensus 256 ~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p 335 (866)
++++++||||||++++||+||||||+|+||+.+|++++++|.+++|+|+|+++|++||||||||+|++|+++|+||||||
T Consensus 206 ~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~~~tpIInpP 285 (347)
T PRK14843 206 ITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQP 285 (347)
T ss_pred EEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCcccceeccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 336 QSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 336 ~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|+||||+|++.++|++.+|++++|++|+++|+||||++||+++++|+..
T Consensus 286 q~aIlgvG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~ 334 (347)
T PRK14843 286 NSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKD 334 (347)
T ss_pred ceEEEecCCcceeeEEECCeEEEEeEEEEEEecchhhhCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988765
|
|
| >PRK11857 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-65 Score=534.42 Aligned_cols=283 Identities=33% Similarity=0.536 Sum_probs=247.6
Q ss_pred cccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhhccc-cccccccc-cC--CCc-cccccc-cCCCcccccc
Q psy9583 101 TIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKN-INEEKQEK-YK--PYL-DSISIK-NNSRLEECVP 174 (866)
Q Consensus 101 ~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~~~~-~~~~~~~~-~~--~~~-~~~~~~-~~~~~~~~~~ 174 (866)
.++||+||+||+|+||||+.| +|||++|||+++||++|+...+. ..+.++.+ .. +.. ...+.+ ......+.+|
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v-~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLL-KGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREK 80 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHC-CCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceecc
Confidence 358999999999999999999 79999999999999999743211 00000000 00 000 000000 0111245689
Q ss_pred CchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeC--
Q psy9583 175 MSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDG-- 252 (866)
Q Consensus 175 ~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~-- 252 (866)
|++||++|+++|++|++++||++++.++|+|+|+++|+++++.+.++.|.|+||++||+||+++||++||.+|++|++
T Consensus 81 ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~ 160 (306)
T PRK11857 81 VAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEAT 160 (306)
T ss_pred CcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCC
Confidence 999999999999999999999999999999999999999998776667899999999999999999999999999984
Q ss_pred CeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCcccccccc
Q psy9583 253 NNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPII 332 (866)
Q Consensus 253 ~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii 332 (866)
+.+++++++||||||++++||+||||||+|++|+.||++++++|.+++|+|+|.++|++||||||||+|++|+.+|+|||
T Consensus 161 ~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~~tpiI 240 (306)
T PRK11857 161 SELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYGVPVI 240 (306)
T ss_pred CEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccceeccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 333 NPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 333 ~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
||||+||||+|++.++|++.+|++++|++|+++++||||++||+++++|...
T Consensus 241 n~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~ 292 (306)
T PRK11857 241 NYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASR 292 (306)
T ss_pred CCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhhCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988764
|
|
| >KOG4716|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=446.83 Aligned_cols=455 Identities=27% Similarity=0.440 Sum_probs=384.2
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEecc-CC-CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW-KD-NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~-~~-~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
+.+||++|||||.+||+||.+++..|.+|.++|-- +. ...++.+||+|.|.||+|.|.|.+.+-.-+.+.+ ...||+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~d-a~kyGW 95 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHD-ARKYGW 95 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHH-HHhhCC
Confidence 34699999999999999999999999999999864 22 3566789999999999999988877765555444 777888
Q ss_pred cccc--cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecC
Q psy9583 466 NTQN--VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATG 541 (866)
Q Consensus 466 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATG 541 (866)
+..+ ...||+.+.+..+..++.++|.++-.+++..|+++.....++++ +++......+ +.++++.+|||||
T Consensus 96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~-----h~I~at~~~gk~~~~ta~~fvIatG 170 (503)
T KOG4716|consen 96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDP-----HKIKATNKKGKERFLTAENFVIATG 170 (503)
T ss_pred CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeeccc-----ceEEEecCCCceEEeecceEEEEec
Confidence 7654 67899999999999999999999888999999999999999887 8887766444 6789999999999
Q ss_pred CCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHH
Q psy9583 542 SKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621 (866)
Q Consensus 542 s~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l 621 (866)
.+|+.|.+++ ...+.+|++|++.+...|.+.+|||+|++++|+|.+|+.+|.+|+++.|+ -++++||.++.+.+.++|
T Consensus 171 ~RPrYp~IpG-~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m 248 (503)
T KOG4716|consen 171 LRPRYPDIPG-AKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRGFDQDMAELVAEHM 248 (503)
T ss_pred CCCCCCCCCC-ceeeeecccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE-eecccccHHHHHHHHHHH
Confidence 9999765443 55678999999999999999999999999999999999999999999884 568999999999999999
Q ss_pred HHcCCEEEeCceEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecC-CCcEEeCC
Q psy9583 622 NKQGLNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE-NNFIIVND 699 (866)
Q Consensus 622 ~~~GV~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~Vd~ 699 (866)
+++||+|...+.++++++-++ .+.+........ +..+-.+|.|+||+|+.+.+.-++|++.|+..++ +|.|.||+
T Consensus 249 ~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~---~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~ 325 (503)
T KOG4716|consen 249 EERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTG---EEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDD 325 (503)
T ss_pred HHhCCceeecccceeeeeccCCcEEEEeeccccc---ccccchhhhhhhhhccccchhhcCCCccceeecccCCccccCh
Confidence 999999999988888887654 455555432221 2336778999999999999999999999999965 58899999
Q ss_pred CCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHhCC-CCCCCCCCccEEEEccCceeeeecCHHHHHhc-CCc-EE
Q psy9583 700 NCETNIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHISGQ-KHSINFNALPFVIYTFPEIASVGKTEQYLKKH-NIS-YN 775 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~~~-~~ 775 (866)
.-+|++|+|||+||... .|-+...|++.||.+|+++++. ....+|..+|+.+|+..|++++||+|++|.+. |.+ +.
T Consensus 326 ~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnie 405 (503)
T KOG4716|consen 326 EEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIE 405 (503)
T ss_pred HHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhcCcceeeeccCCceeeecchhccccCCCHHHHHHHhCcccEE
Confidence 99999999999999985 5779999999999999999865 46678999999999999999999999999766 433 33
Q ss_pred EEEEecCCchhhhhc-CCceEEEEEEEEC-CCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHH
Q psy9583 776 VGIFPFLANSRARIL-GETSGMVKILSDM-KSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMK 853 (866)
Q Consensus 776 ~~~~~~~~~~~~~~~-~~~~g~~kli~~~-~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~ 853 (866)
+....|.....-.-. +....|+|+|+.. ++.+|+|.|++||+|.|+++-++.|++.|+|..+|.+++.+||+.+|.+.
T Consensus 406 vfH~~f~P~E~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft 485 (503)
T KOG4716|consen 406 VFHSYFKPLEYTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFT 485 (503)
T ss_pred EeeccccceEEEcccccCCceEEEEeecccCCceEEEEEEecCchhHHHHHHHHHHHhcccHHHHhhcccccccchhhee
Confidence 322222211111111 3356899999975 56799999999999999999999999999999999999999999999875
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-52 Score=475.35 Aligned_cols=403 Identities=22% Similarity=0.332 Sum_probs=311.7
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceecc-ccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGC-IPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~-~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
++|||||||+||+.||.+|++. +.+|+|||+++. ++ +..| +|... . +..
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~------~~----~~~~~lp~~~----------------~-~~~- 53 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD------MS----FANCALPYYI----------------G-EVV- 53 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC------cc----cccCCcchhh----------------c-Ccc-
Confidence 4799999999999999999987 578999999732 11 0001 11100 0 000
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCC-c--eEEEecEEEEecCCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKT-K--ETITAKYIIIATGSK 543 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~-g--~~i~~d~lViATGs~ 543 (866)
........ .....++++.+++++.+..+. ++. +.+.+.+.+.+ + ..+.||+||||||+.
T Consensus 54 ----~~~~~~~~----------~~~~~~~~~~~i~v~~~~~V~~Id~---~~~~v~~~~~~~~~~~~~~yd~lviAtGs~ 116 (438)
T PRK13512 54 ----EDRKYALA----------YTPEKFYDRKQITVKTYHEVIAIND---ERQTVTVLNRKTNEQFEESYDKLILSPGAS 116 (438)
T ss_pred ----CCHHHccc----------CCHHHHHHhCCCEEEeCCEEEEEEC---CCCEEEEEECCCCcEEeeecCEEEECCCCC
Confidence 00000000 001234466799998765555 544 55777776532 2 357899999999999
Q ss_pred CcCCCCCcCCCceEecch---hhhcc-----ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHH
Q psy9583 544 ARSFPGVKFDENLILSNK---GALEM-----INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK 615 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t~~---~~~~~-----~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~ 615 (866)
|+.|+. +...+++.. +...+ ...+++++|||||++|+|+|..|+++|.+|+++++.+++++.+++++.+
T Consensus 117 ~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~ 193 (438)
T PRK13512 117 ANSLGF---ESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQ 193 (438)
T ss_pred CCCCCC---CCCCeEEecCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHH
Confidence 986652 223344332 22221 1247899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcE
Q psy9583 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI 695 (866)
Q Consensus 616 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 695 (866)
.+.+.|+++||++++++++++++. . .+.+. +|. .+++|.|++|+|++||+++ +++.|++++++|+|
T Consensus 194 ~l~~~l~~~gI~i~~~~~v~~i~~--~--~v~~~--~g~------~~~~D~vl~a~G~~pn~~~--l~~~gl~~~~~G~i 259 (438)
T PRK13512 194 PILDELDKREIPYRLNEEIDAING--N--EVTFK--SGK------VEHYDMIIEGVGTHPNSKF--IESSNIKLDDKGFI 259 (438)
T ss_pred HHHHHHHhcCCEEEECCeEEEEeC--C--EEEEC--CCC------EEEeCEEEECcCCCcChHH--HHhcCcccCCCCcE
Confidence 999999999999999999999963 2 24443 454 7899999999999999987 57889999888999
Q ss_pred EeCCCCCCCCCCEEEecccCC----------CCCcHHHHHHHHHHHHHHHhCCCC-CC-CCCCccEEEEccCceeeeecC
Q psy9583 696 IVNDNCETNIPNIYAIGDVVR----------GPMLAHKAEEEGIMVAEHISGQKH-SI-NFNALPFVIYTFPEIASVGKT 763 (866)
Q Consensus 696 ~Vd~~l~Ts~~~VyA~GD~a~----------~~~~~~~A~~~g~~aa~~i~g~~~-~~-~~~~~p~~~~~~~~~a~vGl~ 763 (866)
.||+++||++|||||+|||++ .+++++.|.+||+++|+||+|... .+ .+..+|.+.|++|+++++|+|
T Consensus 260 ~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~ia~vGlt 339 (438)
T PRK13512 260 PVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVK 339 (438)
T ss_pred EECCCcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCCCccccCCcccceEEEEcCceEEeecCC
Confidence 999999999999999999986 246889999999999999998643 33 456788999999999999999
Q ss_pred HHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHccc-
Q psy9583 764 EQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIARI- 841 (866)
Q Consensus 764 e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~-a~eli~~~~~~i~~~~~~~~l~~~- 841 (866)
|+||++.+ +.+..+++....+.. .+++.||+|+++|+++++|||+|++|++ +.|+|+.++++|++++|++||..+
T Consensus 340 e~~a~~~~--~~~~~~~~~~~~~~~-~~~~~g~~klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~ 416 (438)
T PRK13512 340 PNELKQFD--YKMVEVTQGAHANYY-PGNSPLHLRVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFE 416 (438)
T ss_pred HHHHccCC--cEEEEEecCCcCCCc-CCCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcc
Confidence 99999764 566666655444433 5678999999999999999999999996 899999999999999999999997
Q ss_pred cccCCChhHH---HHHHHHH
Q psy9583 842 CHVHPSLSEA---MKEAAMS 858 (866)
Q Consensus 842 ~~~~Pt~~e~---~~~~~~~ 858 (866)
+++||+++.. ++.+++.
T Consensus 417 ~~~~P~~~~~~~~~~~~~~~ 436 (438)
T PRK13512 417 VAYAPPYSHPKDLINMIGYK 436 (438)
T ss_pred cccCCCCCccccHHHHHHHh
Confidence 8899999955 4555543
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=472.39 Aligned_cols=405 Identities=25% Similarity=0.314 Sum_probs=315.8
Q ss_pred ceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccceecc-ccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCTNVGC-IPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~~~g~-~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
+|||||||+||++||..|++.+ .+|+|||+++ .++ +..| +|.. . .+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~------~~~----~~~~~~~~~---------------~--~~~--- 51 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD------IVS----FGACGLPYF---------------V--GGF--- 51 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC------cce----eecCCCceE---------------e--ccc---
Confidence 6999999999999999999985 5899999973 211 0000 1100 0 000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCceEEE--ecEEEEecCCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTKETIT--AKYIIIATGSKA 544 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g~~i~--~d~lViATGs~p 544 (866)
......+. ......+++.+++++.+..+. ++. ..+.+.+.. .++..+. ||+||||||++|
T Consensus 52 --~~~~~~~~-----------~~~~~~~~~~gv~~~~~~~V~~id~---~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~ 115 (444)
T PRK09564 52 --FDDPNTMI-----------ARTPEEFIKSGIDVKTEHEVVKVDA---KNKTITVKNLKTGSIFNDTYDKLMIATGARP 115 (444)
T ss_pred --cCCHHHhh-----------cCCHHHHHHCCCeEEecCEEEEEEC---CCCEEEEEECCCCCEEEecCCEEEECCCCCC
Confidence 00000000 011234566799998776555 443 446777754 2344566 999999999999
Q ss_pred cCCCCCcCCCceEecc---hhhhccc-----cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHH
Q psy9583 545 RSFPGVKFDENLILSN---KGALEMI-----NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAK 615 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~---~~~~~~~-----~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~ 615 (866)
..++.++.....+++. .+...+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ .+++++.+
T Consensus 116 ~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~ 195 (444)
T PRK09564 116 IIPPIKNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITD 195 (444)
T ss_pred CCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHH
Confidence 8665554443444433 2233322 2478999999999999999999999999999999998886 68999999
Q ss_pred HHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcE
Q psy9583 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI 695 (866)
Q Consensus 616 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 695 (866)
.+.+.|++.||++++++++.++..++....+.. ++. ++++|.+++|+|++|+.++ ++++|++++++|+|
T Consensus 196 ~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~---~~~------~i~~d~vi~a~G~~p~~~~--l~~~gl~~~~~g~i 264 (444)
T PRK09564 196 VMEEELRENGVELHLNEFVKSLIGEDKVEGVVT---DKG------EYEADVVIVATGVKPNTEF--LEDTGLKTLKNGAI 264 (444)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEecCCcEEEEEe---CCC------EEEcCEEEECcCCCcCHHH--HHhcCccccCCCCE
Confidence 999999999999999999999975443222322 333 6899999999999999887 68889998888999
Q ss_pred EeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCCCCCCCCccE-EEEccCceeeeecCH
Q psy9583 696 IVNDNCETNIPNIYAIGDVVRG----------PMLAHKAEEEGIMVAEHISGQKHSINFNALPF-VIYTFPEIASVGKTE 764 (866)
Q Consensus 696 ~Vd~~l~Ts~~~VyA~GD~a~~----------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~-~~~~~~~~a~vGl~e 764 (866)
.||+++||++|||||+|||++. +++++.|.+||+++|+||+|....++....+. ..|++|+++++|+||
T Consensus 265 ~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~ 344 (444)
T PRK09564 265 IVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRHVSFKGTLGSACIKVLDLEAARTGLTE 344 (444)
T ss_pred EECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCCCCCCCcccceEEEECCEEEEEecCCH
Confidence 9999999999999999999963 46899999999999999999766655555444 559999999999999
Q ss_pred HHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHccccc
Q psy9583 765 QYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIARICH 843 (866)
Q Consensus 765 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~-a~eli~~~~~~i~~~~~~~~l~~~~~ 843 (866)
+||++.|+++.+.+++.. +.++.+.+.+.||+||++|+++++|||+|++|+. +.++|+.+++||++++|++||+++.+
T Consensus 345 ~~a~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ 423 (444)
T PRK09564 345 EEAKKLGIDYKTVFIKDK-NHTNYYPGQEDLYVKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDF 423 (444)
T ss_pred HHHHHCCCCeEEEEEecC-CCCCcCCCCceEEEEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhccc
Confidence 999999999999887643 4555666778999999999999999999999996 88999999999999999999999988
Q ss_pred cC-CChhHHHHH
Q psy9583 844 VH-PSLSEAMKE 854 (866)
Q Consensus 844 ~~-Pt~~e~~~~ 854 (866)
+| |+++|+++-
T Consensus 424 ~~~p~~~~~~~~ 435 (444)
T PRK09564 424 CYAPPFARTWDA 435 (444)
T ss_pred ccCCCCCCCcCH
Confidence 77 999988653
|
|
| >PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=433.69 Aligned_cols=215 Identities=43% Similarity=0.702 Sum_probs=190.8
Q ss_pred ccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccce
Q psy9583 169 LEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINA 248 (866)
Q Consensus 169 ~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~ 248 (866)
.++++|++++||+||++|++|++++||+|++.++|+|+|+++|+++++...+. +.++|+++|++||+++||++||++|+
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~-~~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEP-GGKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHT-TST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhh-ccCCChhHeeeehHhhhhHHHHHhcc
Confidence 35789999999999999999999999999999999999999999999875443 55999999999999999999999999
Q ss_pred EEeCCe-eEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccc
Q psy9583 249 SVDGNN-IIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSML 327 (866)
Q Consensus 249 ~~~~~~-~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~ 327 (866)
+|+++. +++++++||||||++++||++|||||++++|+.||+++++++.+++|+|+|.++|++||||||||+|++|+++
T Consensus 82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~ 161 (231)
T PF00198_consen 82 SWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVES 161 (231)
T ss_dssp EEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SC
T ss_pred ccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcce
Confidence 999887 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 328 STPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 328 ~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|+|||||||+|||++|++.++|++++|+++++++|+++|+||||++||.++++|...
T Consensus 162 ~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~ 218 (231)
T PF00198_consen 162 FTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKD 218 (231)
T ss_dssp EE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHH
T ss_pred eEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988764
|
3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H .... |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-45 Score=415.49 Aligned_cols=342 Identities=26% Similarity=0.349 Sum_probs=281.9
Q ss_pred HHHhCCcEEEEeEEEE-eccccCcccEEEEEcC-CceEEE--ecEEEEecCCCCcCCCCCcCCCceEecchhhhc---c-
Q psy9583 495 LFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINK-TKETIT--AKYIIIATGSKARSFPGVKFDENLILSNKGALE---M- 566 (866)
Q Consensus 495 ~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~-~g~~i~--~d~lViATGs~p~~~p~~~~~~~~~~t~~~~~~---~- 566 (866)
++++.|++++.+..+. ++. ..+.+.+... ++..+. ||+||||||++|..++.++.+...+++..+... +
T Consensus 53 ~~~~~gv~~~~~~~V~~id~---~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~ 129 (427)
T TIGR03385 53 FIKKRGIDVKTNHEVIEVND---ERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIK 129 (427)
T ss_pred HHHhcCCeEEecCEEEEEEC---CCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHH
Confidence 4577899988776665 443 4567777643 245677 999999999999876655443344444333221 1
Q ss_pred ----ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-CcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC
Q psy9583 567 ----INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK 641 (866)
Q Consensus 567 ----~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~ 641 (866)
...+++++|||||++|+|+|..|++.|.+|+++++.+.++ +.+++++...+.+.|++.||++++++.+.++..++
T Consensus 130 ~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~ 209 (427)
T TIGR03385 130 QYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEE 209 (427)
T ss_pred HHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCC
Confidence 1347899999999999999999999999999999999884 67899999999999999999999999999998654
Q ss_pred CeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCCC----
Q psy9583 642 ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG---- 717 (866)
Q Consensus 642 ~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~---- 717 (866)
. + +.+. +|. ++++|.+++|+|++|+.++ +++++++++++|+|.||+++||+.|+|||+|||++.
T Consensus 210 ~-~-v~~~--~g~------~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~ 277 (427)
T TIGR03385 210 R-V-KVFT--SGG------VYQADMVILATGIKPNSEL--AKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNII 277 (427)
T ss_pred C-E-EEEc--CCC------EEEeCEEEECCCccCCHHH--HHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeecc
Confidence 3 2 3333 555 7999999999999999987 578899998889999999999999999999999962
Q ss_pred ------CCcHHHHHHHHHHHHHHHhCCCCCCCC-CCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhc
Q psy9583 718 ------PMLAHKAEEEGIMVAEHISGQKHSINF-NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARIL 790 (866)
Q Consensus 718 ------~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 790 (866)
+++++.|.+||++||+||+|....++. ...|++.|++|+++++|+++++|++.|+++.+..+++....+.. .
T Consensus 278 ~~~~~~~~~~~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~-~ 356 (427)
T TIGR03385 278 TKKPAWVPLAWGANKMGRIAGENIAGNDIEFKGVLGTNITKFFDLTIASTGVTENEAKKLNIDYKTVFVKAKTHANYY-P 356 (427)
T ss_pred CCCceeeechHHHHHHHHHHHHHhcCCCCCCCCcceeeEEEEcCeEEEEecCCHHHHHHCCCCeEEEEEecCCCCCcC-C
Confidence 358999999999999999987654432 35788999999999999999999999999998887765544433 4
Q ss_pred CCceEEEEEEEECCCCcEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHccccc-cCCChhHHH
Q psy9583 791 GETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIARICH-VHPSLSEAM 852 (866)
Q Consensus 791 ~~~~g~~kli~~~~~~~ilG~~~~g~~-a~eli~~~~~~i~~~~~~~~l~~~~~-~~Pt~~e~~ 852 (866)
+.+.||+|+++|+++++|||+|++|++ +.|+|+.+++||++++|++||+++.| .||.++..+
T Consensus 357 ~~~~g~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~ 420 (427)
T TIGR03385 357 GNSPLHLKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVW 420 (427)
T ss_pred CCceEEEEEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCcc
Confidence 677899999999999999999999998 99999999999999999999999975 479888654
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=405.74 Aligned_cols=214 Identities=26% Similarity=0.429 Sum_probs=202.7
Q ss_pred cccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceE
Q psy9583 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINAS 249 (866)
Q Consensus 170 ~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~ 249 (866)
.+.+|+++++++|+++|..|+. +|++|...+++++.|+++|.++|..+.+..|.|+||||+|+||+++||++||.+|++
T Consensus 115 ~~~~~LrG~a~aiAkNM~aSL~-vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas 193 (1228)
T PRK12270 115 DEVTPLRGAAAAVAKNMDASLE-VPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH 193 (1228)
T ss_pred cceeecccHHHHHHHHHHhhhc-cCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence 4678999999999999999977 899999999999999999999999999899999999999999999999999999999
Q ss_pred Ee--CCe--eEEccceeEEEEEecC-----CceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcC
Q psy9583 250 VD--GNN--IIYHKYYDIGIAISSS-----RGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNG 320 (866)
Q Consensus 250 ~~--~~~--~~~~~~~~i~~av~~~-----~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~ 320 (866)
|+ +++ ++++++||||+||+++ +||+||+||+|++|++.+|.+++.++++|+|+|+|+++|++||||||||+
T Consensus 194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~ 273 (1228)
T PRK12270 194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNP 273 (1228)
T ss_pred eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecC
Confidence 97 444 9999999999999998 58999999999999999999999999999999999999999999999999
Q ss_pred CCcCccccccccCCCceEEEEeccceeeEEEeC------CeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 321 GVFGSMLSTPIINPPQSAILGVHAIKKRVIVEN------NNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 321 g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~------~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
||+|+..|+|||||||+||||+|++...|++.+ +++.++++|++++++|||++||++++.|+..
T Consensus 274 G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ 343 (1228)
T PRK12270 274 GGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRT 343 (1228)
T ss_pred CcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHH
Confidence 999999999999999999999999998888743 6899999999999999999999998877643
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=411.96 Aligned_cols=388 Identities=17% Similarity=0.251 Sum_probs=293.2
Q ss_pred cceeeecCCccHHHHHHHHHHC----CCeEEEEeccCCC-cccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL----GFKTACIDEWKDN-EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~----g~~V~liek~~~~-~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
.+|||||+|+||+.+|..|++. +++|+||++++++ |.+..+ + .. +. +
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L----------~-~~--------------~~--~- 55 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHL----------S-SY--------------FS--H- 55 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcc----------h-Hh--------------Hc--C-
Confidence 5899999999999999999865 4789999997421 111000 0 00 00 0
Q ss_pred cccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 466 NTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
..+.. +......++++.+|+++.++.+. ++. ..+ .|.+.++..+.||+||||||+.|
T Consensus 56 ------~~~~~-----------l~~~~~~~~~~~gI~~~~g~~V~~Id~---~~~--~V~~~~G~~i~yD~LVIATGs~p 113 (847)
T PRK14989 56 ------HTAEE-----------LSLVREGFYEKHGIKVLVGERAITINR---QEK--VIHSSAGRTVFYDKLIMATGSYP 113 (847)
T ss_pred ------CCHHH-----------ccCCCHHHHHhCCCEEEcCCEEEEEeC---CCc--EEEECCCcEEECCEEEECCCCCc
Confidence 00111 11112346777899999998666 544 223 34445677899999999999999
Q ss_pred cCCCCCcCCCceEe---cchhhhcc---ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHH
Q psy9583 545 RSFPGVKFDENLIL---SNKGALEM---INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKA 617 (866)
Q Consensus 545 ~~~p~~~~~~~~~~---t~~~~~~~---~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l 617 (866)
+.||.++.+...++ +.+++..+ ...+++++|||||++|+|+|..|.++|.+|+++++.+++++ .+|++....+
T Consensus 114 ~~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l 193 (847)
T PRK14989 114 WIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQL 193 (847)
T ss_pred CCCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHH
Confidence 97766554444333 44555443 23578999999999999999999999999999999999887 6899999999
Q ss_pred HHHHHHcCCEEEeCceEEEEEEcCC--eEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcE
Q psy9583 618 FHLLNKQGLNIILNTKIHDIKINKE--NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI 695 (866)
Q Consensus 618 ~~~l~~~GV~i~~~~~v~~i~~~~~--~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 695 (866)
.+.|++.||+++++..++++..++. ...+.+ .+|. ++++|.|++|+|++||+++ ++++|++++++|+|
T Consensus 194 ~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~--~dG~------~i~~D~Vv~A~G~rPn~~L--~~~~Gl~~~~~G~I 263 (847)
T PRK14989 194 RRKIESMGVRVHTSKNTLEIVQEGVEARKTMRF--ADGS------ELEVDFIVFSTGIRPQDKL--ATQCGLAVAPRGGI 263 (847)
T ss_pred HHHHHHCCCEEEcCCeEEEEEecCCCceEEEEE--CCCC------EEEcCEEEECCCcccCchH--HhhcCccCCCCCcE
Confidence 9999999999999999999976532 233444 3665 8999999999999999986 68889999989999
Q ss_pred EeCCCCCCCCCCEEEecccCCCC----CcHHHHHHHHHHHHHHHhCCCCCCCCCCccE-EEEccCceeeeecCHHHHHhc
Q psy9583 696 IVNDNCETNIPNIYAIGDVVRGP----MLAHKAEEEGIMVAEHISGQKHSINFNALPF-VIYTFPEIASVGKTEQYLKKH 770 (866)
Q Consensus 696 ~Vd~~l~Ts~~~VyA~GD~a~~~----~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~-~~~~~~~~a~vGl~e~~a~~~ 770 (866)
.||++|||++|+|||+|||+..+ .+++.|.+||++||+||+|....++....+. ..+.+.+++++|.... +..
T Consensus 264 ~VD~~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~~~~g~~~~~~lk~~G~~v~s~G~~~~--~~~ 341 (847)
T PRK14989 264 VINDSCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSENAFEGADLSAKLKLLGVDVGGIGDAHG--RTP 341 (847)
T ss_pred EECCCCcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCcCCCCcccceEEEECCcceEecccccC--CCC
Confidence 99999999999999999999753 4899999999999999999877777666664 3467778999883211 100
Q ss_pred CCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCCh--HHHHHHHHHHHHCCCCHHHHcccccc---C
Q psy9583 771 NISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMA--SELIAEAVIAIEFRASSEDIARICHV---H 845 (866)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a--~eli~~~~~~i~~~~~~~~l~~~~~~---~ 845 (866)
+ .....+ ..+...+|.||++++++++|||++++|+.+ .++++.+...+..+.+.++|....++ |
T Consensus 342 ~--~~~~~~---------~~~~~~~y~Klv~~~~~~~LlGa~lvGd~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 410 (847)
T PRK14989 342 G--ARSYVY---------LDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIELPENPDSLILPAHAGSGK 410 (847)
T ss_pred C--ceeEEE---------EcCCCCEEEEEEEECCCCEEEEEEEECCHHHHHHHHHHHHcCCCCccchhheecCCCCCCCC
Confidence 1 111001 112357899999999999999999999954 88899888888888888898877654 7
Q ss_pred CCh-hHH
Q psy9583 846 PSL-SEA 851 (866)
Q Consensus 846 Pt~-~e~ 851 (866)
|++ .|.
T Consensus 411 ~~~~~~~ 417 (847)
T PRK14989 411 PSIGVDK 417 (847)
T ss_pred Ccccccc
Confidence 877 443
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=354.54 Aligned_cols=362 Identities=20% Similarity=0.241 Sum_probs=259.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCC--eEEEEeccCC-CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGF--KTACIDEWKD-NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~--~V~liek~~~-~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
..+|||||||+||++||..|++.|. +|+||++++. ||.++.+ ++.++.. ...
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l-----------~~~~~~~--------------~~~ 57 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPL-----------SKSMLLE--------------DSP 57 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCC-----------CHHHHCC--------------CCc
Confidence 4689999999999999999999976 7999998732 1211110 0100000 000
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
. ... + ....++.+.+|+++.++.+. ++. ..+.+.+ .++..+.||+||||||+.|+
T Consensus 58 ~-~~~-----~-------------~~~~~~~~~~i~~~~g~~V~~id~---~~~~v~~--~~g~~~~yd~LViATGs~~~ 113 (396)
T PRK09754 58 Q-LQQ-----V-------------LPANWWQENNVHLHSGVTIKTLGR---DTRELVL--TNGESWHWDQLFIATGAAAR 113 (396)
T ss_pred c-ccc-----c-------------CCHHHHHHCCCEEEcCCEEEEEEC---CCCEEEE--CCCCEEEcCEEEEccCCCCC
Confidence 0 000 0 00234566899999987654 554 3344444 55678999999999999998
Q ss_pred CCCCCcCCCceEec---chhhhccc---cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHH
Q psy9583 546 SFPGVKFDENLILS---NKGALEMI---NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAF 618 (866)
Q Consensus 546 ~~p~~~~~~~~~~t---~~~~~~~~---~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~ 618 (866)
.+|+.+.....+++ .+++..+. ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++...+.
T Consensus 114 ~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~ 193 (396)
T PRK09754 114 PLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLL 193 (396)
T ss_pred CCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHH
Confidence 77765544444554 34544433 2478999999999999999999999999999999999886 46888999999
Q ss_pred HHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeC
Q psy9583 619 HLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVN 698 (866)
Q Consensus 619 ~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd 698 (866)
+.++++||++++++.+++++. ++.+.+.+. +|. ++++|.|++++|.+||+.+ ++.++++.+ |+|.||
T Consensus 194 ~~l~~~GV~i~~~~~V~~i~~-~~~~~v~l~--~g~------~i~aD~Vv~a~G~~pn~~l--~~~~gl~~~--~gi~vd 260 (396)
T PRK09754 194 QRHQQAGVRILLNNAIEHVVD-GEKVELTLQ--SGE------TLQADVVIYGIGISANDQL--AREANLDTA--NGIVID 260 (396)
T ss_pred HHHHHCCCEEEeCCeeEEEEc-CCEEEEEEC--CCC------EEECCEEEECCCCChhhHH--HHhcCCCcC--CCEEEC
Confidence 999999999999999999976 344444443 665 7999999999999999876 467787764 459999
Q ss_pred CCCCCCCCCEEEecccCCC---------CCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHh
Q psy9583 699 DNCETNIPNIYAIGDVVRG---------PMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKK 769 (866)
Q Consensus 699 ~~l~Ts~~~VyA~GD~a~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~ 769 (866)
++|||++|+|||+|||+.. +.+|+.|..||++||+||+|...++......|..+++..+.++|....+
T Consensus 261 ~~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~~~~~~~p~~~~~~~~~~~~~~G~~~~~--- 337 (396)
T PRK09754 261 EACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDMRGD--- 337 (396)
T ss_pred CCCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCCCCCCCCCceEEEeCCccEEEeeCCCCC---
Confidence 9999999999999999952 2468999999999999999987665443444555677899999975421
Q ss_pred cCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCC
Q psy9583 770 HNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRAS 834 (866)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~ 834 (866)
++.+ . . ..+...|+.+++ ++|+|+|+..+|+. .-...+..+|..+..
T Consensus 338 ---~~~~-~---~-------~~~~~~~~~~~~--~~~~l~g~~~~~~~--~~~~~~~~~~~~~~~ 384 (396)
T PRK09754 338 ---DWLC-R---G-------NPETQKAIWFNL--QNGVLIGAVTLNQG--REIRPIRKWIQSGKT 384 (396)
T ss_pred ---EEEE-e---c-------CCCCceEEEEEe--eCCEEEEEEEECCH--HHHHHHHHHHHCCCC
Confidence 1111 0 0 012233444444 47999999999985 233445566777655
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=335.91 Aligned_cols=349 Identities=17% Similarity=0.256 Sum_probs=253.7
Q ss_pred cceeeecCCccHHHHHHHHHHCC--CeEEEEeccCC-CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKD-NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~-~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+||||||||+||+++|..|++.+ .+|+||++++. +|.++.+ ++ . +. .+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l-----------~~-------~-------~~-~~~-- 54 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDL-----------SH-------V-------FS-QGQ-- 54 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcC-----------cH-------H-------Hh-CCC--
Confidence 68999999999999999999864 67999998732 1111110 00 0 00 000
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
....+.. .....++++++++++.+..+. ++. ..+.+.. ++..+.||+||||||+.|..
T Consensus 55 -----~~~~~~~----------~~~~~~~~~~gv~~~~~~~V~~id~---~~~~v~~---~~~~~~yd~LVlATG~~~~~ 113 (377)
T PRK04965 55 -----RADDLTR----------QSAGEFAEQFNLRLFPHTWVTDIDA---EAQVVKS---QGNQWQYDKLVLATGASAFV 113 (377)
T ss_pred -----CHHHhhc----------CCHHHHHHhCCCEEECCCEEEEEEC---CCCEEEE---CCeEEeCCEEEECCCCCCCC
Confidence 1111110 112345677899998876554 544 3344443 45689999999999999987
Q ss_pred CCCCcCCCceEecchh---hhcc---ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-ccHHHHHHHHH
Q psy9583 547 FPGVKFDENLILSNKG---ALEM---INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFH 619 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~---~~~~---~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~ 619 (866)
|+.++... +++..+ +... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. ++++....+++
T Consensus 114 p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~ 191 (377)
T PRK04965 114 PPIPGREL--MLTLNSQQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQH 191 (377)
T ss_pred CCCCCCce--EEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHH
Confidence 76554332 444332 2221 135789999999999999999999999999999999998864 68899999999
Q ss_pred HHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND 699 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~ 699 (866)
.|++.||++++++.++++..+++.+.+.+. +|. ++++|.||+|+|.+|+..+ ++.+|++.+ +| |.||+
T Consensus 192 ~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~--~g~------~i~~D~vI~a~G~~p~~~l--~~~~gl~~~-~g-i~vd~ 259 (377)
T PRK04965 192 RLTEMGVHLLLKSQLQGLEKTDSGIRATLD--SGR------SIEVDAVIAAAGLRPNTAL--ARRAGLAVN-RG-IVVDS 259 (377)
T ss_pred HHHhCCCEEEECCeEEEEEccCCEEEEEEc--CCc------EEECCEEEECcCCCcchHH--HHHCCCCcC-CC-EEECC
Confidence 999999999999999999877666666554 665 8999999999999999987 577788875 56 99999
Q ss_pred CCCCCCCCEEEecccCCCC----CcHHHHHHHHHHHHHHHhCCCCCCCCCCcc-EEEEccCceeeeecCHHHHHhcCCcE
Q psy9583 700 NCETNIPNIYAIGDVVRGP----MLAHKAEEEGIMVAEHISGQKHSINFNALP-FVIYTFPEIASVGKTEQYLKKHNISY 774 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~~~----~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p-~~~~~~~~~a~vGl~e~~a~~~~~~~ 774 (866)
+|||++|||||+|||+..+ ..+..|++||++||+||+|....+.....+ ...+.+.++.++|.... ... .
T Consensus 260 ~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~-~ 334 (377)
T PRK04965 260 YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNTPLKLPAMLVKVKTPELPLQLAGETQR----QDL-R 334 (377)
T ss_pred CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCCcccccCCccEEEecCceeeEECCCCCC----CCc-e
Confidence 9999999999999999633 357889999999999999988776654443 44577889999997542 110 0
Q ss_pred EEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHH
Q psy9583 775 NVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASE 820 (866)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e 820 (866)
.. +. ..+...|.|+++ ++|+|+|+.++|+.+.+
T Consensus 335 ~~--~~---------~~~~~~~~~~~~--~~~~l~g~~~~g~~~~~ 367 (377)
T PRK04965 335 WQ--IN---------AESQGMVAKGVD--EAGQLRAFVVSEDRMKE 367 (377)
T ss_pred EE--EE---------eCCCCeEEEEEc--cCCcEEEEEEEChhHHH
Confidence 11 00 112334556666 47999999999997544
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=360.14 Aligned_cols=367 Identities=20% Similarity=0.292 Sum_probs=267.5
Q ss_pred eeeecCCccHHHHHHHHHHC---CCeEEEEeccCCC-cccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 393 VIVIGAGPGGYVASIRLAQL---GFKTACIDEWKDN-EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 393 VvIIGgG~AGl~aA~~L~~~---g~~V~liek~~~~-~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
|||||||+||++||.+|++. +++|+||++++++ |.+..+ + . + + . |
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L----------~-~-~-------------l-~-g---- 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILL----------S-S-V-------------L-Q-G---- 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccc----------c-H-H-------------H-C-C----
Confidence 68999999999999999876 4789999997421 111000 0 0 0 0 0 0
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
..+...+. .....++++.+|+++.++.+. ++. ..+. |.+.++.++.||+||||||+.|+.|
T Consensus 50 --~~~~~~l~-----------~~~~~~~~~~gv~~~~g~~V~~Id~---~~k~--V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 50 --EADLDDIT-----------LNSKDWYEKHGITLYTGETVIQIDT---DQKQ--VITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred --CCCHHHcc-----------CCCHHHHHHCCCEEEcCCeEEEEEC---CCCE--EEECCCcEeeCCEEEECCCCCcCCC
Confidence 00111111 112345677899999987655 554 3343 4445677899999999999999877
Q ss_pred CCCcCCCceEec---chhhhccc---cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHHHH
Q psy9583 548 PGVKFDENLILS---NKGALEMI---NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHL 620 (866)
Q Consensus 548 p~~~~~~~~~~t---~~~~~~~~---~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~ 620 (866)
|.++.+...+++ .+++..+. ..+++++|||||++|+|+|..|.++|.+|+++++.+++++ .+|++....+.+.
T Consensus 112 ~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~ 191 (785)
T TIGR02374 112 PIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRE 191 (785)
T ss_pred CCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHH
Confidence 666544444443 33333322 3578999999999999999999999999999999999886 5899999999999
Q ss_pred HHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCC
Q psy9583 621 LNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDN 700 (866)
Q Consensus 621 l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~ 700 (866)
|++.||++++++.++++..++....+.+. +|. .+++|.|++++|++|++++ +++++++++ |+|.||++
T Consensus 192 l~~~GV~v~~~~~v~~i~~~~~~~~v~~~--dG~------~i~~D~Vi~a~G~~Pn~~l--a~~~gl~~~--ggI~Vd~~ 259 (785)
T TIGR02374 192 LEQKGLTFLLEKDTVEIVGATKADRIRFK--DGS------SLEADLIVMAAGIRPNDEL--AVSAGIKVN--RGIIVNDS 259 (785)
T ss_pred HHHcCCEEEeCCceEEEEcCCceEEEEEC--CCC------EEEcCEEEECCCCCcCcHH--HHhcCCccC--CCEEECCC
Confidence 99999999999999999865544445554 665 8999999999999999987 577788875 55999999
Q ss_pred CCCCCCCEEEecccCCCC----CcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEE-EEccCceeeeecCHHHHHhcCCcE
Q psy9583 701 CETNIPNIYAIGDVVRGP----MLAHKAEEEGIMVAEHISGQK-HSINFNALPFV-IYTFPEIASVGKTEQYLKKHNISY 774 (866)
Q Consensus 701 l~Ts~~~VyA~GD~a~~~----~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~-~~~~~~~a~vGl~e~~a~~~~~~~ 774 (866)
|||++|+|||+|||+..+ .++..|..||+++|.||+|.. .++........ .+.+.+++++|....... .
T Consensus 260 ~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~~~~~~-----~ 334 (785)
T TIGR02374 260 MQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDAQETER-----T 334 (785)
T ss_pred cccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccCCCCCC-----c
Confidence 999999999999999643 478889999999999999977 55555444433 478889999997653211 1
Q ss_pred EEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHH
Q psy9583 775 NVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDI 838 (866)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l 838 (866)
....+. ......|.|++++ +++|+|++++|+.. + ...+..++.++..+.+.
T Consensus 335 ~~~~~~---------d~~~~~y~kl~~~--~~rLlGavlvgd~~-~-~~~L~~li~~~~~l~~~ 385 (785)
T TIGR02374 335 TSIKIY---------DEQKGIYKKLVLS--DDKLLGAVLFGDTS-D-YGRLLDMVLKQADISED 385 (785)
T ss_pred EEEEEE---------cCCCCEEEEEEEE--CCEEEEEEEECCHH-H-HHHHHHHHHcCCCCCcC
Confidence 111111 1234568999996 46899999999863 3 34556667777655443
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=295.66 Aligned_cols=292 Identities=24% Similarity=0.315 Sum_probs=210.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
|||+|||||+||++||..|++.|++|+|||+. .+||.|.....+. . +. +++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-------~~gg~~~~~~~~~---------------~-~~--~~~~--- 52 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGM-------EPGGQLTTTTEVE---------------N-YP--GFPE--- 52 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecc-------CCCcceeeccccc---------------c-cC--CCCC---
Confidence 68999999999999999999999999999986 3677654321110 0 00 0000
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGV 550 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~~ 550 (866)
......+ ...+...+++.++++++.....++. ....+.+...++.++.||+||+|||+.|..++.+
T Consensus 53 ~~~~~~~-----------~~~l~~~~~~~gv~~~~~~v~~v~~---~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~ 118 (300)
T TIGR01292 53 GISGPEL-----------MEKMKEQAVKFGAEIIYEEVIKVDL---SDRPFKVKTGDGKEYTAKAVIIATGASARKLGIP 118 (300)
T ss_pred CCChHHH-----------HHHHHHHHHHcCCeEEEEEEEEEEe---cCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCC
Confidence 0000111 1223445677899998855544543 3345566655667899999999999988755433
Q ss_pred cCC---CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHc-CC
Q psy9583 551 KFD---ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ-GL 626 (866)
Q Consensus 551 ~~~---~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~-GV 626 (866)
+.. ...+............+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+.. ...+.+.|++. ||
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~------~~~~~~~l~~~~gv 192 (300)
T TIGR01292 119 GEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA------EKILLDRLRKNPNI 192 (300)
T ss_pred ChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc------CHHHHHHHHhCCCe
Confidence 321 112221111111223468999999999999999999999999999999876532 23456667777 99
Q ss_pred EEEeCceEEEEEEcCCeEEEEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
++++++.++++..++....+.+.. .++. ..++++|.+++|+|++|+.+++ +.. +.++++|++.||++++|++
T Consensus 193 ~~~~~~~v~~i~~~~~~~~v~~~~~~~g~----~~~i~~D~vi~a~G~~~~~~~l--~~~-~~~~~~g~i~v~~~~~t~~ 265 (300)
T TIGR01292 193 EFLWNSTVKEIVGDNKVEGVKIKNTVTGE----EEELKVDGVFIAIGHEPNTELL--KGL-LELDEGGYIVTDEGMRTSV 265 (300)
T ss_pred EEEeccEEEEEEccCcEEEEEEEecCCCc----eEEEEccEEEEeeCCCCChHHH--HHh-heecCCCcEEECCCCccCC
Confidence 999999999998755333344432 1222 3589999999999999999874 555 6778889999999999999
Q ss_pred CCEEEecccCC-CCCcHHHHHHHHHHHHHHHhC
Q psy9583 706 PNIYAIGDVVR-GPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 706 ~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~g 737 (866)
|+||++|||++ .++.+..|+.||+.||.+|..
T Consensus 266 ~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 266 PGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence 99999999998 678899999999999999863
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=301.50 Aligned_cols=285 Identities=21% Similarity=0.335 Sum_probs=216.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+.+|||||||++|+.+|.+|.+.- .+|+|||+.++. + .....++ .....++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h-----l----------------~~plL~e-----va~g~l~~ 56 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH-----L----------------FTPLLYE-----VATGTLSE 56 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc-----c----------------cchhhhh-----hhcCCCCh
Confidence 378999999999999999999974 899999997311 0 1111111 11111222
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.....+ +...+++. +++++.+++..+|. +.++|.+ .++..+.||+||+|+|+.+..
T Consensus 57 ~~i~~p------------------~~~~~~~~~~v~~~~~~V~~ID~---~~k~V~~--~~~~~i~YD~LVvalGs~~~~ 113 (405)
T COG1252 57 SEIAIP------------------LRALLRKSGNVQFVQGEVTDIDR---DAKKVTL--ADLGEISYDYLVVALGSETNY 113 (405)
T ss_pred hheecc------------------HHHHhcccCceEEEEEEEEEEcc---cCCEEEe--CCCccccccEEEEecCCcCCc
Confidence 111222 33445544 49999999988776 5566665 445689999999999999875
Q ss_pred C--CCCcCCCceEecchhhhcccc-----------CC-----CeEEEECCcHHHHHHHHHHHhcC-------------Cc
Q psy9583 547 F--PGVKFDENLILSNKGALEMIN-----------VP-----KKLCIIGAGVIGLEIGSIWRRLG-------------SE 595 (866)
Q Consensus 547 ~--p~~~~~~~~~~t~~~~~~~~~-----------~~-----~~vvVIGgG~~glE~A~~l~~~g-------------~~ 595 (866)
+ ||.......+.+.+++.+++. .. -+++|+|||++|+|+|..|+++- .+
T Consensus 114 fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~ 193 (405)
T COG1252 114 FGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELR 193 (405)
T ss_pred CCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccE
Confidence 5 343333344445566544321 12 26999999999999999888652 28
Q ss_pred EEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 596 VTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 596 Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
|+++++.+++++.+++.+++++++.|++.||++++++.|++++.+. +++. +|. .++++|.+||++|.++
T Consensus 194 V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~--~g~-----~~I~~~tvvWaaGv~a 262 (405)
T COG1252 194 VILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLK--DGE-----EEIPADTVVWAAGVRA 262 (405)
T ss_pred EEEEccCchhccCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc----EEEc--cCC-----eeEecCEEEEcCCCcC
Confidence 9999999999999999999999999999999999999999998765 4454 443 1599999999999999
Q ss_pred CCCCCCccc-cCeeecCCCcEEeCCCCCC-CCCCEEEecccCC------CCCcHHHHHHHHHHHHHHHhC
Q psy9583 676 NTNNLNIDK-IGLKVNENNFIIVNDNCET-NIPNIYAIGDVVR------GPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 676 ~~~~l~l~~-~gl~~~~~G~i~Vd~~l~T-s~~~VyA~GD~a~------~~~~~~~A~~~g~~aa~~i~g 737 (866)
+.-. ++ .+++.|..|++.||++|++ ++|+|||+|||+. .|+.++.|++||+++|+||..
T Consensus 263 ~~~~---~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 263 SPLL---KDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred Chhh---hhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHH
Confidence 8764 55 4788888899999999996 7999999999995 257899999999999999974
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=310.88 Aligned_cols=310 Identities=18% Similarity=0.246 Sum_probs=222.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+++|||||||+||+.+|.+|.+.+++|+|||++++.+..+ .... .. .|
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~---------------------~l~~-----~~-~g----- 57 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTP---------------------LLPQ-----TT-TG----- 57 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhh---------------------hHHH-----hc-cc-----
Confidence 4789999999999999999987789999999873211100 0000 00 00
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEc--------CCceEEEecEEEEecC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIIN--------KTKETITAKYIIIATG 541 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~--------~~g~~i~~d~lViATG 541 (866)
..++...... +...++..+++++.+.+..++. ..+.+.+.. +++.++.||+||||||
T Consensus 58 -~~~~~~~~~~-----------~~~~~~~~~~~~i~~~V~~Id~---~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtG 122 (424)
T PTZ00318 58 -TLEFRSICEP-----------VRPALAKLPNRYLRAVVYDVDF---EEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHG 122 (424)
T ss_pred -CCChHHhHHH-----------HHHHhccCCeEEEEEEEEEEEc---CCCEEEEecccccccccCCceEecCCEEEECCC
Confidence 1111111111 2334566789999988877765 456666621 3456899999999999
Q ss_pred CCCcCCCCCcCCC--ceEecchhhhccc--------------------cCCCeEEEECCcHHHHHHHHHHHh--------
Q psy9583 542 SKARSFPGVKFDE--NLILSNKGALEMI--------------------NVPKKLCIIGAGVIGLEIGSIWRR-------- 591 (866)
Q Consensus 542 s~p~~~p~~~~~~--~~~~t~~~~~~~~--------------------~~~~~vvVIGgG~~glE~A~~l~~-------- 591 (866)
+.+..++.++... ..+.+..++..+. ...++++|||||++|+|+|..|..
T Consensus 123 s~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~ 202 (424)
T PTZ00318 123 ARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRN 202 (424)
T ss_pred cccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHh
Confidence 9987554333221 1122222221110 012489999999999999999876
Q ss_pred ------cCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEecc
Q psy9583 592 ------LGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665 (866)
Q Consensus 592 ------~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D 665 (866)
.+.+|+++++.+++++.+++++.+.+++.|+++||+++++++|+++..+ . +.+. +|+ ++++|
T Consensus 203 ~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~--~--v~~~--~g~------~i~~d 270 (424)
T PTZ00318 203 LNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK--E--VVLK--DGE------VIPTG 270 (424)
T ss_pred hhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC--E--EEEC--CCC------EEEcc
Confidence 3689999999999999999999999999999999999999999998743 2 3443 565 89999
Q ss_pred EEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCC-CCCCCEEEecccCCC-----CCcHHHHHHHHHHHHHHHhCCC
Q psy9583 666 KLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE-TNIPNIYAIGDVVRG-----PMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 666 ~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~-Ts~~~VyA~GD~a~~-----~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
.+++++|.+|+. + ++.++++++++|+|.||++|| |++|||||+|||+.. |+.+..|++||+++|+||....
T Consensus 271 ~vi~~~G~~~~~-~--~~~~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l 347 (424)
T PTZ00318 271 LVVWSTGVGPGP-L--TKQLKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNEL 347 (424)
T ss_pred EEEEccCCCCcc-h--hhhcCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 999999999984 4 467788888889999999999 699999999999973 5789999999999999997542
Q ss_pred CCCCCCCccEEEEccCceeeeec
Q psy9583 740 HSINFNALPFVIYTFPEIASVGK 762 (866)
Q Consensus 740 ~~~~~~~~p~~~~~~~~~a~vGl 762 (866)
... ....|+.....+.+.++|-
T Consensus 348 ~g~-~~~~~~~~~~~g~~~~lG~ 369 (424)
T PTZ00318 348 KGK-PMSKPFVYRSLGSLAYLGN 369 (424)
T ss_pred cCC-CCCCCCeecCCceEEEecC
Confidence 111 1233444444456666663
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-32 Score=295.95 Aligned_cols=298 Identities=20% Similarity=0.286 Sum_probs=212.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
+.+||+||||||||++||..|+++|+++++||+. .+||.|.....+ ++++..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-------~~gg~~~~~~~~---------------------~~~~~~ 56 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-------EKGGQLTTTTEV---------------------ENWPGD 56 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-------cCCCceecCceE---------------------CCCCCC
Confidence 4699999999999999999999999999999963 678876433211 111111
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p 548 (866)
....++..+..+ +......+++++..+....++. ....+.+..+. ..+.||+||+|||+.|+.|+
T Consensus 57 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~v~~v~~---~~~~~~v~~~~-~~~~~d~vilAtG~~~~~~~ 121 (321)
T PRK10262 57 PNDLTGPLLMER-----------MHEHATKFETEIIFDHINKVDL---QNRPFRLTGDS-GEYTCDALIIATGASARYLG 121 (321)
T ss_pred CCCCCHHHHHHH-----------HHHHHHHCCCEEEeeEEEEEEe---cCCeEEEEecC-CEEEECEEEECCCCCCCCCC
Confidence 112233333222 2334455667777665433332 23556665433 36899999999999988665
Q ss_pred CCcCC---CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 549 GVKFD---ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 549 ~~~~~---~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
.++.. ...+............+++++|||+|++|+|+|..|++.+++|+++++.+.+. .++.+.+.+++.|++.|
T Consensus 122 i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~--~~~~~~~~~~~~l~~~g 199 (321)
T PRK10262 122 LPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGN 199 (321)
T ss_pred CCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC--CCHHHHHHHHhhccCCC
Confidence 44322 22222222222233458999999999999999999999999999999988753 35677888899999999
Q ss_pred CEEEeCceEEEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC-----
Q psy9583 626 LNIILNTKIHDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND----- 699 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~----- 699 (866)
|++++++.++++..++.++ .+.+..... .++..++++|.|++++|++||..++ .. ++.++ +|+|.||+
T Consensus 200 V~i~~~~~v~~v~~~~~~~~~v~~~~~~~--~~~~~~i~~D~vv~a~G~~p~~~l~--~~-~l~~~-~g~i~vd~~~~~~ 273 (321)
T PRK10262 200 IILHTNRTLEEVTGDQMGVTGVRLRDTQN--SDNIESLDVAGLFVAIGHSPNTAIF--EG-QLELE-NGYIKVQSGIHGN 273 (321)
T ss_pred eEEEeCCEEEEEEcCCccEEEEEEEEcCC--CCeEEEEECCEEEEEeCCccChhHh--hc-ccccc-CCEEEECCCCccc
Confidence 9999999999998765333 344542211 1123479999999999999999874 32 46654 68899997
Q ss_pred CCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q psy9583 700 NCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~~-~~~~~~A~~~g~~aa~~i~g 737 (866)
+++|++|+|||+|||++. +.....|+.+|..||..|..
T Consensus 274 ~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~ 312 (321)
T PRK10262 274 ATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAER 312 (321)
T ss_pred ccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHH
Confidence 789999999999999964 45677799999999998854
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=311.75 Aligned_cols=292 Identities=23% Similarity=0.313 Sum_probs=212.8
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
..|||+||||||||++||..|++.|++|+||++ .+||.|...-.++ + + .+.+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--------~~GG~~~~~~~~~---------------~-~--~~~~-- 262 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--------RIGGQVKDTVGIE---------------N-L--ISVP-- 262 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--------CCCCccccCcCcc---------------c-c--cccC--
Confidence 359999999999999999999999999999974 5788764321110 0 0 0010
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
...+.++. ..+...+++++++++.+..+. ++. ..+.+.+...++..+.||++|+|||+.|+.+
T Consensus 263 --~~~~~~l~-----------~~l~~~l~~~gv~i~~~~~V~~I~~---~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 263 --YTTGSQLA-----------ANLEEHIKQYPIDLMENQRAKKIET---EDGLIVVTLESGEVLKAKSVIVATGARWRKL 326 (515)
T ss_pred --CCCHHHHH-----------HHHHHHHHHhCCeEEcCCEEEEEEe---cCCeEEEEECCCCEEEeCEEEECCCCCcCCC
Confidence 11222222 224455677899998876555 332 2244556556667899999999999998765
Q ss_pred CCCcC---CCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH-
Q psy9583 548 PGVKF---DENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK- 623 (866)
Q Consensus 548 p~~~~---~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~- 623 (866)
+.++. ....++...........+++++|||||++|+|+|..|+..+.+|+++++.+.+.. ...+.+.|++
T Consensus 327 ~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~------~~~l~~~l~~~ 400 (515)
T TIGR03140 327 GVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA------DKVLQDKLKSL 400 (515)
T ss_pred CCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh------hHHHHHHHhcC
Confidence 44331 1122222222111223578999999999999999999999999999998887643 2345667776
Q ss_pred cCCEEEeCceEEEEEEcCCeEE-EEEeeC-CCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC
Q psy9583 624 QGLNIILNTKIHDIKINKENVL-INYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~~~~~-v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l 701 (866)
.||++++++.++++..+++.+. +.+.+. ++. ..++++|.|++++|++|+++++ +.. ++++++|+|.||+++
T Consensus 401 ~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~~~~----~~~i~~D~vi~a~G~~Pn~~~l--~~~-~~~~~~G~I~vd~~~ 473 (515)
T TIGR03140 401 PNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGE----EKQLDLDGVFVQIGLVPNTEWL--KDA-VELNRRGEIVIDERG 473 (515)
T ss_pred CCCEEEECCeeEEEEcCCCEEEEEEEEECCCCc----EEEEEcCEEEEEeCCcCCchHH--hhh-cccCCCCeEEECCCC
Confidence 6999999999999987655543 555432 222 3479999999999999999984 444 778888999999999
Q ss_pred CCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHhC
Q psy9583 702 ETNIPNIYAIGDVVRGP-MLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 702 ~Ts~~~VyA~GD~a~~~-~~~~~A~~~g~~aa~~i~g 737 (866)
||++|+|||+|||++.+ .++..|+.+|..||.+|..
T Consensus 474 ~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 474 RTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred CCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 99999999999999855 5778999999999999865
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=299.60 Aligned_cols=371 Identities=20% Similarity=0.279 Sum_probs=274.3
Q ss_pred cceeeecCCccHHHHHHHHHHC---CCeEEEEeccCCC-cccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL---GFKTACIDEWKDN-EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~---g~~V~liek~~~~-~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
.+++|||.|+||..+...+.+. -+++++|-.++++ |.+..+.-. ++
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~v------------------------------l~ 53 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSV------------------------------LA 53 (793)
T ss_pred eeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccc------------------------------cC
Confidence 6799999999999999999884 3789999776432 222111000 00
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
. .-++.++.- .-..|+++++|+++.+..+. ++. ....|.++.|+++.||+||+||||.|+
T Consensus 54 ~---~~~~edi~l-----------~~~dwy~~~~i~L~~~~~v~~idr-----~~k~V~t~~g~~~~YDkLilATGS~pf 114 (793)
T COG1251 54 G---EKTAEDISL-----------NRNDWYEENGITLYTGEKVIQIDR-----ANKVVTTDAGRTVSYDKLIIATGSYPF 114 (793)
T ss_pred C---CccHHHHhc-----------cchhhHHHcCcEEEcCCeeEEecc-----CcceEEccCCcEeecceeEEecCcccc
Confidence 0 001111111 12457889999999998887 555 444555678899999999999999999
Q ss_pred CCCCCcCCCceEecchhh---hccc---cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-CcccHHHHHHHH
Q psy9583 546 SFPGVKFDENLILSNKGA---LEMI---NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-NTVDEEIAKKAF 618 (866)
Q Consensus 546 ~~p~~~~~~~~~~t~~~~---~~~~---~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-~~~d~~~~~~l~ 618 (866)
.+|+++.+...++..+++ ..+. ...++.+|||||..|+|+|..|...|-++++++..+.++ .++|+.....++
T Consensus 115 i~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~ 194 (793)
T COG1251 115 ILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLR 194 (793)
T ss_pred ccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHH
Confidence 988887665555544433 3322 235668999999999999999999999999999999988 489999999999
Q ss_pred HHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeC
Q psy9583 619 HLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVN 698 (866)
Q Consensus 619 ~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd 698 (866)
+.|++.|++++++...+++...+....+.+. +|. .+++|.|++|+|++||.++ ...+|+.++. | |.||
T Consensus 195 ~~le~~Gi~~~l~~~t~ei~g~~~~~~vr~~--DG~------~i~ad~VV~a~GIrPn~el--a~~aGlavnr-G-Ivvn 262 (793)
T COG1251 195 RKLEDLGIKVLLEKNTEEIVGEDKVEGVRFA--DGT------EIPADLVVMAVGIRPNDEL--AKEAGLAVNR-G-IVVN 262 (793)
T ss_pred HHHHhhcceeecccchhhhhcCcceeeEeec--CCC------cccceeEEEecccccccHh--HHhcCcCcCC-C-eeec
Confidence 9999999999999998888764434445554 787 8999999999999999998 7889999984 5 9999
Q ss_pred CCCCCCCCCEEEecccCC----CCCcHHHHHHHHHHHHHHHhCCCC-CCCCCCccEE--EEccCceeeeecCHHHHHhcC
Q psy9583 699 DNCETNIPNIYAIGDVVR----GPMLAHKAEEEGIMVAEHISGQKH-SINFNALPFV--IYTFPEIASVGKTEQYLKKHN 771 (866)
Q Consensus 699 ~~l~Ts~~~VyA~GD~a~----~~~~~~~A~~~g~~aa~~i~g~~~-~~~~~~~p~~--~~~~~~~a~vGl~e~~a~~~~ 771 (866)
++||||+|+|||+|+|+. .+.+...++.||+++|+|+++... +|.. .+++. ..++.++.+.|--.+ ..+
T Consensus 263 d~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~a~hl~~~~~~~y~g-sv~stkLKv~Gvdl~S~GD~~e---~~~ 338 (793)
T COG1251 263 DYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHLCGGEAEAYEG-SVTSTKLKVSGVDVFSAGDFQE---TEG 338 (793)
T ss_pred ccccccCCCeeehhhHHHhcCccceehhHHHHHHHHHHHHhccCccccccc-ccchhhhcccccceeeccchhh---cCC
Confidence 999999999999999996 467899999999999999998765 3332 22222 345566667764331 112
Q ss_pred CcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccc
Q psy9583 772 ISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARI 841 (866)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~ 841 (866)
.+..+ + .+ .....|-|+++. +++|+|+.++|+.+.- +-+-.+|..+..++++...
T Consensus 339 ~~~iv--~--~D-------~~~~iYKrlvL~--dd~IvgavL~GDt~d~--~~l~~li~~~~~~se~r~~ 393 (793)
T COG1251 339 AESIV--F--RD-------EQRGIYKKLVLK--DDKIVGAVLYGDTSDG--GWLLDLILKGADISEIRDT 393 (793)
T ss_pred CceEE--E--ec-------ccccceeEEEEe--CCeEEEEEEEeecccc--hHHHHHHhcCCCccccchh
Confidence 11111 1 11 123457788884 6799999999996432 2355677888888888765
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=310.46 Aligned_cols=294 Identities=19% Similarity=0.274 Sum_probs=205.2
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|.+.|||+||||||||++||.+|++.|++|+|||++ .+||.|....++.. +. +..
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-------~~GG~~~~~~~i~~----------------~p--g~~ 55 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-------DFGGQITITSEVVN----------------YP--GIL 55 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-------CCCceEEecccccc----------------CC--CCc
Confidence 455699999999999999999999999999999984 68888754332210 00 000
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
......+.. .+...+++.+++++.+....++. ....+.+.+.++ .+.|++||||||++|+.
T Consensus 56 ----~~~~~~l~~-----------~l~~~~~~~gv~~~~~~V~~i~~---~~~~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 56 ----NTTGPELMQ-----------EMRQQAQDFGVKFLQAEVLDVDF---DGDIKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred ----CCCHHHHHH-----------HHHHHHHHcCCEEeccEEEEEEe---cCCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence 011111111 23345667789987665544443 223345554444 58999999999999987
Q ss_pred CCCCcCC---CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH
Q psy9583 547 FPGVKFD---ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK 623 (866)
Q Consensus 547 ~p~~~~~---~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~ 623 (866)
|+.++.. ...++....+......+++++|||||++|+|+|..|.++|.+|+++++.+.+.. +... ..+.++.
T Consensus 117 ~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~--~~~~---~~~~~~~ 191 (555)
T TIGR03143 117 LGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC--AKLI---AEKVKNH 191 (555)
T ss_pred CCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc--CHHH---HHHHHhC
Confidence 6554421 222222211111223579999999999999999999999999999999887632 2222 2333455
Q ss_pred cCCEEEeCceEEEEEEcCCeEEEEEee-CCCCccceeEE--EeccE----EEEeeccccCCCCCCccccCeeecCCCcEE
Q psy9583 624 QGLNIILNTKIHDIKINKENVLINYSN-KSTNVKTEIIT--SIFDK----LLIAIGRIPNTNNLNIDKIGLKVNENNFII 696 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~~~~~v~~~~-~~g~~~~~~~~--~~~D~----vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 696 (866)
.||++++++.|+++..++....+.+.. .+|. ..+ +.+|. |++++|++|++.++ +. +++++++|+|.
T Consensus 192 ~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~G~----~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~--~~-~l~l~~~G~I~ 264 (555)
T TIGR03143 192 PKIEVKFNTELKEATGDDGLRYAKFVNNVTGE----ITEYKAPKDAGTFGVFVFVGYAPSSELF--KG-VVELDKRGYIP 264 (555)
T ss_pred CCcEEEeCCEEEEEEcCCcEEEEEEEECCCCC----EEEEeccccccceEEEEEeCCCCChhHH--hh-hcccCCCCeEE
Confidence 799999999999998654322233322 2343 223 34676 99999999999974 33 57888889999
Q ss_pred eCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHh
Q psy9583 697 VNDNCETNIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 697 Vd~~l~Ts~~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~ 736 (866)
||++++|++|+|||+|||+. .+..+..|+.||+.||.+|.
T Consensus 265 vd~~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 265 TNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred eCCccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 99999999999999999985 34567889999999999985
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=276.96 Aligned_cols=290 Identities=23% Similarity=0.304 Sum_probs=211.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCe-EEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFK-TACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~-V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
.|||+|||||||||+||.++++.+++ ++|+|+. .+||......-+ .+++..
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~-------~~gg~~~~~~~v---------------------enypg~ 54 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG-------EPGGQLTKTTDV---------------------ENYPGF 54 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC-------CcCCccccceee---------------------cCCCCC
Confidence 59999999999999999999999999 6666663 556533111100 111111
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p 548 (866)
........+... ...+....++++.......++. ....+.|.++++. +++++||||||..++.+.
T Consensus 55 ~~~~~g~~L~~~-----------~~~~a~~~~~~~~~~~v~~v~~---~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 55 PGGILGPELMEQ-----------MKEQAEKFGVEIVEDEVEKVEL---EGGPFKVKTDKGT-YEAKAVIIATGAGARKLG 119 (305)
T ss_pred ccCCchHHHHHH-----------HHHHHhhcCeEEEEEEEEEEee---cCceEEEEECCCe-EEEeEEEECcCCcccCCC
Confidence 111223333333 3344667899988855555543 2127888877766 999999999999887553
Q ss_pred CC---cCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHc-
Q psy9583 549 GV---KFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ- 624 (866)
Q Consensus 549 ~~---~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~- 624 (866)
.+ .+.+..+..+..+.. ...+++++|||||.+++|.|.+|.+.+++||+++|++.+.. .+.+.+.|++.
T Consensus 120 ~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra------~~~~~~~l~~~~ 192 (305)
T COG0492 120 VPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA------EEILVERLKKNV 192 (305)
T ss_pred CCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc------CHHHHHHHHhcC
Confidence 22 233333333333333 34578999999999999999999999999999999998766 33445555555
Q ss_pred CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
+|++++++.++++..++ .-.+.+.+..+. ...+.+|.+++++|..|++++ ++..+. ++++|+|+||+.++||
T Consensus 193 ~i~~~~~~~i~ei~G~~-v~~v~l~~~~~~----~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~Ts 264 (305)
T COG0492 193 KIEVLTNTVVKEILGDD-VEGVVLKNVKGE----EKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETS 264 (305)
T ss_pred CeEEEeCCceeEEecCc-cceEEEEecCCc----eEEEEeceEEEecCCCCchHH--Hhhccc-cCCCCcEEcCCCcccC
Confidence 89999999999999876 223555432232 468999999999999999988 456566 7889999999999999
Q ss_pred CCCEEEecccCCCCC-cHHHHHHHHHHHHHHHhC
Q psy9583 705 IPNIYAIGDVVRGPM-LAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 705 ~~~VyA~GD~a~~~~-~~~~A~~~g~~aa~~i~g 737 (866)
+|||||||||+..+. ++..|..+|..||.++..
T Consensus 265 vpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~ 298 (305)
T COG0492 265 VPGIFAAGDVADKNGRQIATAAGDGAIAALSAER 298 (305)
T ss_pred CCCEEEeEeeccCcccEEeehhhhHHHHHHHHHH
Confidence 999999999998654 788999999999988754
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=304.48 Aligned_cols=285 Identities=22% Similarity=0.284 Sum_probs=207.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.+||+|||||+||++||..|++.|++|+|||+. +.+||.+.+ + +|..
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~------~~~GG~l~~-g-ip~~------------------------- 179 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEAL------HKPGGVVTY-G-IPEF------------------------- 179 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC------CCCCcEeee-c-CCCc-------------------------
Confidence 589999999999999999999999999999997 567876532 1 2210
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCC-CCcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGS-KARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs-~p~~~p 548 (866)
..+ ..+... ....+++.|++++.+..+. ..+.+ ++. ...||+||||||+ .|+.++
T Consensus 180 -~~~-~~~~~~-----------~~~~l~~~gv~~~~~~~v~--------~~v~~--~~~-~~~yd~viiAtGa~~p~~~~ 235 (449)
T TIGR01316 180 -RLP-KEIVVT-----------EIKTLKKLGVTFRMNFLVG--------KTATL--EEL-FSQYDAVFIGTGAGLPKLMN 235 (449)
T ss_pred -cCC-HHHHHH-----------HHHHHHhCCcEEEeCCccC--------CcCCH--HHH-HhhCCEEEEeCCCCCCCcCC
Confidence 000 011111 1234567899998887431 12222 112 3469999999998 577665
Q ss_pred CCcCCCceEecchhhhcc---------------ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHH
Q psy9583 549 GVKFDENLILSNKGALEM---------------INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEI 613 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~---------------~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~ 613 (866)
.++.+...+++..+++.. ...+++++|||||++|+|+|..+.++|.+|++++++++......
T Consensus 236 ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~--- 312 (449)
T TIGR01316 236 IPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTAR--- 312 (449)
T ss_pred CCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCC---
Confidence 554444456665544321 12468999999999999999999999999999999875322111
Q ss_pred HHHHHHHHHHcCCEEEeCceEEEEEEcC-CeE-EEEEee-------CCCC-----ccceeEEEeccEEEEeeccccCCCC
Q psy9583 614 AKKAFHLLNKQGLNIILNTKIHDIKINK-ENV-LINYSN-------KSTN-----VKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 614 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~-~v~~~~-------~~g~-----~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
....+.+++.||++++++.++++..++ +.+ .+.+.. .+|+ ..++...+++|.||+|+|+.|+..+
T Consensus 313 -~~~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~ 391 (449)
T TIGR01316 313 -VEEIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIM 391 (449)
T ss_pred -HHHHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchh
Confidence 223356788999999999999998653 333 233321 1221 0122357999999999999999876
Q ss_pred CCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 680 LNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 680 l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
++..+++++++|+|.||++++|++|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 392 --l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 392 --AETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred --hhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 57788999888999999999999999999999998898999999999999999853
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-31 Score=299.22 Aligned_cols=287 Identities=23% Similarity=0.290 Sum_probs=208.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
..+||+||||||||++||..|++.|++|+|||+. +.+||.+.+ .+|.. .++
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~------~~~GG~l~~--gip~~-------------------~l~-- 189 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL------HEPGGVLVY--GIPEF-------------------RLP-- 189 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC------CCCCCeeee--cCCCc-------------------cCC--
Confidence 3589999999999999999999999999999987 568887632 12210 000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc-eEEEecEEEEecCC-CCcC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK-ETITAKYIIIATGS-KARS 546 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs-~p~~ 546 (866)
-..+..+ ...++++.|++++.++.+. ..+.+ ++. ..+.||+||||||+ .|+.
T Consensus 190 -----~~~~~~~-----------~~~~~~~~gv~i~~~~~v~--------~~v~~--~~~~~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 190 -----KETVVKK-----------EIENIKKLGVKIETNVVVG--------KTVTI--DELLEEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred -----ccHHHHH-----------HHHHHHHcCCEEEcCCEEC--------CcCCH--HHHHhccCCCEEEEeCCCCCCCC
Confidence 0011111 1235667899998887542 11122 122 34579999999998 5877
Q ss_pred CCCCcCCCceEecchhhhcc--------------ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc-CCCcccH
Q psy9583 547 FPGVKFDENLILSNKGALEM--------------INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN-FLNTVDE 611 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~--------------~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~-~l~~~d~ 611 (866)
++.++.+...+++..+++.. ...+++|+|||||++|+|+|..+.++|.+|+++++.+. .++....
T Consensus 244 l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~ 323 (464)
T PRK12831 244 MGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVE 323 (464)
T ss_pred CCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHH
Confidence 66655555567766655432 13578999999999999999999999999999998764 2332222
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEE-EEEe-------eCCCCc-----cceeEEEeccEEEEeeccccCC
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKE-NVL-INYS-------NKSTNV-----KTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~-v~~~-------~~~g~~-----~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
+ + +.+++.||++++++.+.++..+++ .+. +.+. +.+|.. .++...+++|.||+|+|+.|+.
T Consensus 324 e----~-~~a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~ 398 (464)
T PRK12831 324 E----V-HHAKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNP 398 (464)
T ss_pred H----H-HHHHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCCh
Confidence 2 1 345678999999999999976543 332 2221 112221 1223579999999999999999
Q ss_pred CCCCccc-cCeeecCCCcEEeCCC-CCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 678 NNLNIDK-IGLKVNENNFIIVNDN-CETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 678 ~~l~l~~-~gl~~~~~G~i~Vd~~-l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
.++ .. .|++++++|+|.||++ ++||+|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 399 ~~~--~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 399 LIS--STTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDE 458 (464)
T ss_pred hhh--cccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 763 44 6888888899999998 9999999999999999888999999999999999853
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=302.08 Aligned_cols=291 Identities=22% Similarity=0.310 Sum_probs=212.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.|||+||||||||++||.+|++.|++|+||++ .+||.|...-.++. +. ++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--------~~GG~~~~~~~~~~----------------~~--~~---- 260 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--------RFGGQVLDTMGIEN----------------FI--SV---- 260 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--------CCCCeeeccCcccc----------------cC--CC----
Confidence 58999999999999999999999999999975 48888742111100 00 00
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p 548 (866)
....+.++.. .+...+++++++++.++.+. ++. ....+.+...++..+.||+||+|||+.|+.++
T Consensus 261 ~~~~~~~l~~-----------~l~~~~~~~gv~i~~~~~V~~I~~---~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ 326 (517)
T PRK15317 261 PETEGPKLAA-----------ALEEHVKEYDVDIMNLQRASKLEP---AAGLIEVELANGAVLKAKTVILATGARWRNMN 326 (517)
T ss_pred CCCCHHHHHH-----------HHHHHHHHCCCEEEcCCEEEEEEe---cCCeEEEEECCCCEEEcCEEEECCCCCcCCCC
Confidence 0122333222 24556778899998876554 433 22345555556678999999999999887654
Q ss_pred CCc---CCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH-c
Q psy9583 549 GVK---FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK-Q 624 (866)
Q Consensus 549 ~~~---~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~-~ 624 (866)
.++ +....++...........+++++|||||++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+.+ .
T Consensus 327 ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~------~~~l~~~l~~~~ 400 (517)
T PRK15317 327 VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA------DQVLQDKLRSLP 400 (517)
T ss_pred CCCHHHhcCceEEEeeccCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc------cHHHHHHHhcCC
Confidence 332 12222332222222223578999999999999999999999999999999887643 2345566665 6
Q ss_pred CCEEEeCceEEEEEEcCCeEE-EEEeeC-CCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCC
Q psy9583 625 GLNIILNTKIHDIKINKENVL-INYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE 702 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~~~-v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~ 702 (866)
||++++++.++++..+++.+. +.+.+. ++. ..++++|.+++++|++|+++++ +.. ++++++|+|.||+++|
T Consensus 401 gI~i~~~~~v~~i~~~~g~v~~v~~~~~~~g~----~~~i~~D~v~~~~G~~p~~~~l--~~~-v~~~~~g~i~vd~~l~ 473 (517)
T PRK15317 401 NVTIITNAQTTEVTGDGDKVTGLTYKDRTTGE----EHHLELEGVFVQIGLVPNTEWL--KGT-VELNRRGEIIVDARGA 473 (517)
T ss_pred CcEEEECcEEEEEEcCCCcEEEEEEEECCCCc----EEEEEcCEEEEeECCccCchHH--hhh-eeeCCCCcEEECcCCC
Confidence 999999999999987755443 455432 232 3579999999999999999984 444 7888889999999999
Q ss_pred CCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHhC
Q psy9583 703 TNIPNIYAIGDVVRGP-MLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 703 Ts~~~VyA~GD~a~~~-~~~~~A~~~g~~aa~~i~g 737 (866)
|++|||||+|||++.+ +.+..|+.+|..||.++..
T Consensus 474 Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 474 TSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFD 509 (517)
T ss_pred CCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHH
Confidence 9999999999999854 6889999999999999864
|
|
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=272.62 Aligned_cols=365 Identities=20% Similarity=0.250 Sum_probs=262.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCC--eEEEEeccC-CCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGF--KTACIDEWK-DNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~--~V~liek~~-~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
..++|||+|++|..|+.++++.|. +++|+-++. .||.+..+-.... |.
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~~Ls~~~~---~~-------------------------- 125 (478)
T KOG1336|consen 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRARLSKFLL---TV-------------------------- 125 (478)
T ss_pred ceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccchhccccee---ec--------------------------
Confidence 679999999999999999999984 577776542 3333333211100 00
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.+.+......++++.+|++++++.+. +|. ...++...+|+.++|++|+||||+.+..
T Consensus 126 -----------------~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~-----~~K~l~~~~Ge~~kys~LilATGs~~~~ 183 (478)
T KOG1336|consen 126 -----------------GEGLAKRTPEFYKEKGIELILGTSVVKADL-----ASKTLVLGNGETLKYSKLIIATGSSAKT 183 (478)
T ss_pred -----------------cccccccChhhHhhcCceEEEcceeEEeec-----cccEEEeCCCceeecceEEEeecCcccc
Confidence 00111112447888999999999887 554 3344444678999999999999998887
Q ss_pred CCCCcCCCceEecchhhhc------cccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHHH
Q psy9583 547 FPGVKFDENLILSNKGALE------MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFH 619 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~------~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~ 619 (866)
+|.++.+...+.+.++..+ ......+++++|+|++|+|+|..|...+.+||++++.+.+++ .+.+.+.+.+++
T Consensus 184 l~~pG~~~~nv~~ireieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~ 263 (478)
T KOG1336|consen 184 LDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYED 263 (478)
T ss_pred CCCCCccccceeeeccHHHHHHHHHHhccCceEEEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHH
Confidence 7666655544443333222 223467899999999999999999999999999999999997 679999999999
Q ss_pred HHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND 699 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~ 699 (866)
+++++||++++++.+.+++.+.++-...+...++. ++++|.|++++|.+|+++++ +. +..++.+|+|.||+
T Consensus 264 y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~------~l~adlvv~GiG~~p~t~~~--~~-g~~~~~~G~i~V~~ 334 (478)
T KOG1336|consen 264 YYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGK------TLEADLVVVGIGIKPNTSFL--EK-GILLDSKGGIKVDE 334 (478)
T ss_pred HHHhcCeEEEEecceeecccCCCCcEEEEEeccCC------EeccCeEEEeeccccccccc--cc-cceecccCCEeehh
Confidence 99999999999999999998776655555556887 99999999999999999995 54 77888899999999
Q ss_pred CCCCCCCCEEEecccCCCC----------CcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEE--EccCceeeeecCHHHH
Q psy9583 700 NCETNIPNIYAIGDVVRGP----------MLAHKAEEEGIMVAEHISGQKHSINFNALPFVI--YTFPEIASVGKTEQYL 767 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~~~~a~vGl~e~~a 767 (866)
+|||++|||||+||++..| ..+..|..+|+.|...+....... +..+|++. ++...+-+-|..
T Consensus 335 ~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~-~~~lPyf~t~~f~~~~~~~G~g---- 409 (478)
T KOG1336|consen 335 FFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA-YDYLPYFYTRFFSLSWRFAGDG---- 409 (478)
T ss_pred ceeeccCCcccccceeecccccccccccchHHHHHHHHHHhhhhhhhccCccc-ccccchHHHHHhhhhccccCcC----
Confidence 9999999999999999754 236678888997666665433222 44566543 111111122211
Q ss_pred HhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHH
Q psy9583 768 KKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDI 838 (866)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l 838 (866)
.+..+.. . ..+...|+.-+++ +..+|+..=+.. .+..+.++-.++.+..+.-+
T Consensus 410 --~~~~v~~-----G-------~~e~~~f~ay~~k---~~~v~a~~~~g~-~~~~~~~a~l~~~~~~v~~~ 462 (478)
T KOG1336|consen 410 --VGDVVLF-----G-------DLEPGSFGAYWIK---GDKVGAVAEGGR-DEEVSQFAKLARQGPEVTSL 462 (478)
T ss_pred --ccceeee-----c-------ccccccceeeEee---ccEEEEEeccCC-ChHHHHHHHHHhcCCcchhh
Confidence 0000000 0 1123346666663 667777765553 58888999999999877653
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-30 Score=303.05 Aligned_cols=283 Identities=22% Similarity=0.333 Sum_probs=203.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.++|+||||||||++||..|++.|++|+|||+. +.+||.+.+ .+|...+ +
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~------~~~GG~lr~--~IP~~Rl-------------------p--- 588 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFERE------ENAGGVVKN--IIPQFRI-------------------P--- 588 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecc------cccCcceee--ecccccc-------------------c---
Confidence 578999999999999999999999999999997 678887643 2332110 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc-CCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR-SFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~-~~p 548 (866)
...+.+ ...++++.||++..++.+.++ + ++.....||+||||||+.+. .++
T Consensus 589 -----~evL~~-----------die~l~~~GVe~~~gt~Vdi~----------l--e~L~~~gYDaVILATGA~~~~~l~ 640 (1019)
T PRK09853 589 -----AELIQH-----------DIEFVKAHGVKFEFGCSPDLT----------V--EQLKNEGYDYVVVAIGADKNGGLK 640 (1019)
T ss_pred -----HHHHHH-----------HHHHHHHcCCEEEeCceeEEE----------h--hhheeccCCEEEECcCCCCCCCCC
Confidence 011111 123456679999988765221 1 12244569999999999854 333
Q ss_pred CCcCCCceEecchhhhcc-------ccCCCeEEEECCcHHHHHHHHHHHhc-C-CcEEEEecCC-cCCCcccHHHHHHHH
Q psy9583 549 GVKFDENLILSNKGALEM-------INVPKKLCIIGAGVIGLEIGSIWRRL-G-SEVTILEMSS-NFLNTVDEEIAKKAF 618 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~-------~~~~~~vvVIGgG~~glE~A~~l~~~-g-~~Vtli~~~~-~~l~~~d~~~~~~l~ 618 (866)
..+ ....+++..+++.. ...+++|+|||||++|+|+|..+.+. | .+|++++|++ ..++..+.++.
T Consensus 641 IpG-~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle---- 715 (1019)
T PRK09853 641 LEG-GNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYE---- 715 (1019)
T ss_pred CCC-ccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHH----
Confidence 222 22345544333321 23579999999999999999998887 4 4899999876 34555554433
Q ss_pred HHHHHcCCEEEeCceEEEEEEcCCeEEEE---Ee--eCCCCc----cceeEEEeccEEEEeeccccCCCCCCccccCeee
Q psy9583 619 HLLNKQGLNIILNTKIHDIKINKENVLIN---YS--NKSTNV----KTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689 (866)
Q Consensus 619 ~~l~~~GV~i~~~~~v~~i~~~~~~~~v~---~~--~~~g~~----~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~ 689 (866)
+.+ +.||++++++.+.++..+ +.+.+. +. +.+|.. .++..++++|.||+|+|.+|+.++ ++..|+++
T Consensus 716 ~Al-eeGVe~~~~~~p~~I~~d-G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntel--le~~GL~l 791 (1019)
T PRK09853 716 EAL-EDGVEFKELLNPESFDAD-GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL--LKANGIPL 791 (1019)
T ss_pred HHH-HcCCEEEeCCceEEEEcC-CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhH--HHhcCccc
Confidence 333 469999999999998643 333221 11 111210 122458999999999999999988 57788988
Q ss_pred cCCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 690 NENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 690 ~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
+++|+|.||++++|+.|+|||+|||+.+|.++..|+.+|+.||++|++..
T Consensus 792 d~~G~I~VDetlqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 792 DKKGWPVVDANGETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred cCCCCEEeCCCcccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 88899999999999999999999999889999999999999999998743
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-30 Score=284.57 Aligned_cols=280 Identities=18% Similarity=0.294 Sum_probs=203.9
Q ss_pred ceeeecCCccHHHHHHHHHHC---CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQL---GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~---g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
+|||||||+||+.+|.+|+++ +.+|+|||+++..+ +..+.|. +.. |
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~----------~~~~~~~----------------~~~-g---- 49 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP----------YSGMLPG----------------MIA-G---- 49 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc----------ccchhhH----------------HHh-e----
Confidence 489999999999999999754 68999999873100 0001110 000 0
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p 548 (866)
..+..++ ...+..++++.+++++.+.+..++. ..+.+. +.+++++.||+||||||+.|..++
T Consensus 50 --~~~~~~~-----------~~~~~~~~~~~gv~~~~~~v~~id~---~~~~V~--~~~g~~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 50 --HYSLDEI-----------RIDLRRLARQAGARFVIAEATGIDP---DRRKVL--LANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred --eCCHHHh-----------cccHHHHHHhcCCEEEEEEEEEEec---ccCEEE--ECCCCcccccEEEEccCCCCCCCC
Confidence 0011111 1113345667899999988777765 334444 456778999999999999998665
Q ss_pred CCcCCCceEe---cchhhhc----c------ccCCCeEEEECCcHHHHHHHHHHHh----cC--CcEEEEecCCcCCCcc
Q psy9583 549 GVKFDENLIL---SNKGALE----M------INVPKKLCIIGAGVIGLEIGSIWRR----LG--SEVTILEMSSNFLNTV 609 (866)
Q Consensus 549 ~~~~~~~~~~---t~~~~~~----~------~~~~~~vvVIGgG~~glE~A~~l~~----~g--~~Vtli~~~~~~l~~~ 609 (866)
.++. ...++ +.+++.. + ...+++++|||+|++|+|+|..|.+ .| .+|+++ +.+.+++.+
T Consensus 112 i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~ 189 (364)
T TIGR03169 112 VEGA-ADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGF 189 (364)
T ss_pred CCcc-cccccccCCHHHHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccC
Confidence 4432 22222 2122111 1 1235799999999999999999975 34 589999 677788888
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeee
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~ 689 (866)
++++...+++.|++.||++++++.+.++..+ .+.+. +|. ++++|.+++|+|.+|+.. +...++++
T Consensus 190 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~----~v~~~--~g~------~i~~D~vi~a~G~~p~~~---l~~~gl~~ 254 (364)
T TIGR03169 190 PAKVRRLVLRLLARRGIEVHEGAPVTRGPDG----ALILA--DGR------TLPADAILWATGARAPPW---LAESGLPL 254 (364)
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCeeEEEcCC----eEEeC--CCC------EEecCEEEEccCCChhhH---HHHcCCCc
Confidence 9999999999999999999999999988633 24443 555 899999999999999864 35567888
Q ss_pred cCCCcEEeCCCCCC-CCCCEEEecccCCC-----CCcHHHHHHHHHHHHHHHhC
Q psy9583 690 NENNFIIVNDNCET-NIPNIYAIGDVVRG-----PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 690 ~~~G~i~Vd~~l~T-s~~~VyA~GD~a~~-----~~~~~~A~~~g~~aa~~i~g 737 (866)
+++|+|.||+++|| ++|+|||+|||+.. ++.+..|++||+++|+||..
T Consensus 255 ~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 255 DEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred CCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHH
Confidence 88899999999998 99999999999953 35688899999999999964
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=288.54 Aligned_cols=285 Identities=24% Similarity=0.286 Sum_probs=203.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.++|+||||||||+++|..|++.|++|+|||+. +.+||...+ .+|.. .
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~------~~~gG~l~~--gip~~------------------------~ 187 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEAR------DKAGGLLRY--GIPEF------------------------R 187 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC------CCCCcEeec--cCCCc------------------------c
Confidence 478999999999999999999999999999997 567775421 11210 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~~p 548 (866)
.. ..+. .....++++.|++++.++.+.. .+.+ ++. .+.||+||+|||+. |+.++
T Consensus 188 ~~---~~~~-----------~~~~~~l~~~gv~~~~~~~v~~--------~v~~--~~~-~~~~d~vvlAtGa~~~~~~~ 242 (457)
T PRK11749 188 LP---KDIV-----------DREVERLLKLGVEIRTNTEVGR--------DITL--DEL-RAGYDAVFIGTGAGLPRFLG 242 (457)
T ss_pred CC---HHHH-----------HHHHHHHHHcCCEEEeCCEECC--------ccCH--HHH-HhhCCEEEEccCCCCCCCCC
Confidence 00 0111 1123456678999988876421 1111 112 37799999999986 55444
Q ss_pred CCcCCCceEecchhhhccc---------cCCCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcC-CCcccHHHHHHH
Q psy9583 549 GVKFDENLILSNKGALEMI---------NVPKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNF-LNTVDEEIAKKA 617 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~~---------~~~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~-l~~~d~~~~~~l 617 (866)
.++.+...+++..+++... ..+++++|||||.+|+|+|..+.+.|. +|+++++.+.. ++..+. .
T Consensus 243 i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~-----~ 317 (457)
T PRK11749 243 IPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEE-----E 317 (457)
T ss_pred CCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH-----H
Confidence 4433344455544333221 257999999999999999999999998 89999987653 333322 2
Q ss_pred HHHHHHcCCEEEeCceEEEEEEcCCe---EEEEEee-----CCCC----ccceeEEEeccEEEEeeccccCCCCCCcccc
Q psy9583 618 FHLLNKQGLNIILNTKIHDIKINKEN---VLINYSN-----KSTN----VKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685 (866)
Q Consensus 618 ~~~l~~~GV~i~~~~~v~~i~~~~~~---~~v~~~~-----~~g~----~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~ 685 (866)
.+.+++.||++++++.+.++..++++ +.+.... .+|+ ..++..++++|.|++|+|++|+..++ .+..
T Consensus 318 ~~~~~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~-~~~~ 396 (457)
T PRK11749 318 VEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLIL-STTP 396 (457)
T ss_pred HHHHHHCCCEEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhh-cccc
Confidence 46678899999999999999876543 3322110 1111 01224579999999999999997763 3456
Q ss_pred CeeecCCCcEEeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 686 GLKVNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 686 gl~~~~~G~i~Vd~-~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
+++++++|+|.||+ +++|++|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 397 gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 397 GLELNRWGTIIADDETGRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred CccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 78888899999998 89999999999999998888999999999999999863
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=275.33 Aligned_cols=297 Identities=22% Similarity=0.250 Sum_probs=203.1
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
...+|+|||+|++|+++|..|++.|++|++||+. +.+||..... .+. .
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~------~~~gg~~~~~--~~~------------------------~ 64 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKL------PEPGGLMLFG--IPE------------------------F 64 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCC------CCCCceeeec--Ccc------------------------c
Confidence 3578999999999999999999999999999997 5666643210 000 0
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccc--cCcccEEEEEc--CCceEEEecEEEEecCCC-
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKI--QNNFHEIQIIN--KTKETITAKYIIIATGSK- 543 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~--~~~~~~v~v~~--~~g~~i~~d~lViATGs~- 543 (866)
..+...+. .... .+.+.+++++.++.+..... ......+.... .++..+.||+||||||+.
T Consensus 65 --~~~~~~~~-----------~~~~-~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~ 130 (352)
T PRK12770 65 --RIPIERVR-----------EGVK-ELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWK 130 (352)
T ss_pred --ccCHHHHH-----------HHHH-HHHhCCeEEecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCC
Confidence 00001100 0112 24455899888876653210 00011111111 112247899999999994
Q ss_pred CcCCCCCcCCCceEecchhhhc-----------ccc----CCCeEEEECCcHHHHHHHHHHHhcCCc-EEEEecCCcCCC
Q psy9583 544 ARSFPGVKFDENLILSNKGALE-----------MIN----VPKKLCIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNFLN 607 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t~~~~~~-----------~~~----~~~~vvVIGgG~~glE~A~~l~~~g~~-Vtli~~~~~~l~ 607 (866)
|+.|+.++.+...+++..+... ... .+++++|||+|++|+|+|..|...|.+ |+++++.+....
T Consensus 131 ~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~ 210 (352)
T PRK12770 131 SRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA 210 (352)
T ss_pred CCcCCCCCccccCceeHHHHHHHhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC
Confidence 6655554444445555432211 111 258999999999999999999999987 999998764322
Q ss_pred cccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCC-------C-----CccceeEEEeccEEEEeecccc
Q psy9583 608 TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKS-------T-----NVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 608 ~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~-------g-----~~~~~~~~~~~D~vi~a~G~~p 675 (866)
.. .....+.|+++||++++++.+.+++..+....+.+.... + ...++...+++|.+++++|++|
T Consensus 211 ~~----~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p 286 (352)
T PRK12770 211 PA----GKYEIERLIARGVEFLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIP 286 (352)
T ss_pred CC----CHHHHHHHHHcCCEEeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCC
Confidence 22 234456689999999999999999865432233332100 0 0011245799999999999999
Q ss_pred CCCCCCccc-cCeeecCCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 676 NTNNLNIDK-IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 676 ~~~~l~l~~-~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
+..+. .. .|++++++|+|.||++++|+.|+|||+|||+..+.++..|+.+|+.||.+|..
T Consensus 287 ~~~l~--~~~~g~~~~~~g~i~vd~~~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 287 TPPFA--KECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred Cchhh--hcccCceecCCCcEeeCCCcccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHH
Confidence 98763 33 78888888999999999999999999999998889999999999999999864
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=297.93 Aligned_cols=282 Identities=23% Similarity=0.343 Sum_probs=201.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.+||+||||||||++||..|++.|++|+|||+. +.+||.+.+. +|... ++
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~------~~lGG~l~~~--IP~~r-------------------lp--- 586 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK------EKPGGVVKNI--IPEFR-------------------IS--- 586 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecc------cccCceeeec--ccccC-------------------CC---
Confidence 479999999999999999999999999999997 6788876432 33211 00
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
...+.+ ...++.+.||+++.+.... +.+ ++.....||+||||||+.+..++.
T Consensus 587 -----~e~l~~-----------~ie~l~~~GVe~~~g~~~d----------~~v--e~l~~~gYDaVIIATGA~~~~~l~ 638 (1012)
T TIGR03315 587 -----AESIQK-----------DIELVKFHGVEFKYGCSPD----------LTV--AELKNQGYKYVILAIGAWKHGPLR 638 (1012)
T ss_pred -----HHHHHH-----------HHHHHHhcCcEEEEecccc----------eEh--hhhhcccccEEEECCCCCCCCCCC
Confidence 011111 1234566799998874211 112 122345699999999998543322
Q ss_pred CcCCCceEecchhhhc-------cccCCCeEEEECCcHHHHHHHHHHHhc-CC-cEEEEecCC-cCCCcccHHHHHHHHH
Q psy9583 550 VKFDENLILSNKGALE-------MINVPKKLCIIGAGVIGLEIGSIWRRL-GS-EVTILEMSS-NFLNTVDEEIAKKAFH 619 (866)
Q Consensus 550 ~~~~~~~~~t~~~~~~-------~~~~~~~vvVIGgG~~glE~A~~l~~~-g~-~Vtli~~~~-~~l~~~d~~~~~~l~~ 619 (866)
.......+++..+++. ....+++|+|||||++|+|+|..+.+. |. +|++++|+. ..++..+.++ .+
T Consensus 639 I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl----~~ 714 (1012)
T TIGR03315 639 LEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREEL----EE 714 (1012)
T ss_pred cCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHH----HH
Confidence 2212234554433332 124589999999999999999998886 75 799999876 3455555443 33
Q ss_pred HHHHcCCEEEeCceEEEEEEcCCeEEEEEe-----eCCCC----ccceeEEEeccEEEEeeccccCCCCCCccccCeeec
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKENVLINYS-----NKSTN----VKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN 690 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~-----~~~g~----~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~ 690 (866)
.+ +.||+++++..+.++. ++.+.+... ..+|. ..++..++++|.||+|+|++|+.++ ++..|++++
T Consensus 715 al-eeGVe~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~l--le~~GL~ld 789 (1012)
T TIGR03315 715 AL-EDGVDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLD 789 (1012)
T ss_pred HH-HcCCEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHH--HHhcCcccC
Confidence 33 4699999999998887 334433211 01111 0123457999999999999999988 577889998
Q ss_pred CCCcEEeCCC-CCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC
Q psy9583 691 ENNFIIVNDN-CETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 691 ~~G~i~Vd~~-l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~ 738 (866)
.+|+|.||++ ++|+.|+|||+|||+.+|.++..|+.+|+.||.+|++.
T Consensus 790 ~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 790 EYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhcc
Confidence 8999999986 89999999999999988999999999999999999864
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=299.75 Aligned_cols=286 Identities=25% Similarity=0.341 Sum_probs=206.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
..+||+||||||||++||..|++.|++|+|||+. +.+||...+ .+|..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~------~~~GG~l~~--gip~~------------------------ 477 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL------HEIGGVLKY--GIPEF------------------------ 477 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC------CCCCCeeee--cCCCC------------------------
Confidence 3579999999999999999999999999999997 567886432 12211
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCC-CCcCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGS-KARSF 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs-~p~~~ 547 (866)
.. + ..+..+ ....+++.||+++.++.+. ..+.+ ++.....||+||||||+ .|+.+
T Consensus 478 rl--p-~~~~~~-----------~~~~l~~~gv~~~~~~~v~--------~~v~~--~~l~~~~ydavvlAtGa~~~~~l 533 (752)
T PRK12778 478 RL--P-KKIVDV-----------EIENLKKLGVKFETDVIVG--------KTITI--EELEEEGFKGIFIASGAGLPNFM 533 (752)
T ss_pred CC--C-HHHHHH-----------HHHHHHHCCCEEECCCEEC--------CcCCH--HHHhhcCCCEEEEeCCCCCCCCC
Confidence 00 0 011111 1234667899998876542 12222 22234679999999998 47766
Q ss_pred CCCcCCCceEecchhhhcc--------------ccCCCeEEEECCcHHHHHHHHHHHhcCCc-EEEEecCCcC-CCcccH
Q psy9583 548 PGVKFDENLILSNKGALEM--------------INVPKKLCIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNF-LNTVDE 611 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~--------------~~~~~~vvVIGgG~~glE~A~~l~~~g~~-Vtli~~~~~~-l~~~d~ 611 (866)
+.++.+...+++..+++.. ...+++|+|||||++|+|+|..+.++|.+ |+++++++.. ++....
T Consensus 534 ~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~ 613 (752)
T PRK12778 534 NIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLE 613 (752)
T ss_pred CCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHH
Confidence 5555445566666654432 12468999999999999999999999997 9999987642 333222
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEE-EEEe-------eCCCC-----ccceeEEEeccEEEEeeccccCC
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKE-NVL-INYS-------NKSTN-----VKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~-v~~~-------~~~g~-----~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
++ +.+++.||++++++.+.++..+++ .+. +.+. +.+|+ ..++...+++|.||+|+|++|+.
T Consensus 614 e~-----~~~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~ 688 (752)
T PRK12778 614 EV-----KHAKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNP 688 (752)
T ss_pred HH-----HHHHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCc
Confidence 22 346788999999999999876543 221 2321 01222 11234579999999999999998
Q ss_pred CCCCccc-cCeeecCCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 678 NNLNIDK-IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 678 ~~l~l~~-~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
.++ +. .+++++++|+|.||++++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 689 ~l~--~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 689 LVP--SSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred ccc--ccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 763 33 47889888999999999999999999999998888999999999999999864
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=299.10 Aligned_cols=286 Identities=23% Similarity=0.283 Sum_probs=206.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.++|+|||||||||+||..|++.|++|+|||+. +.+||...+ ++|...+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~------~~~GG~l~y--GIP~~rl----------------------- 354 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF------HDLGGVLRY--GIPEFRL----------------------- 354 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC------CCCCceEEc--cCCCCcC-----------------------
Confidence 589999999999999999999999999999997 678886421 1332110
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~~p 548 (866)
. ..++.+ ....+++.||++..+..+. ..+.+ ++.....||+|+||||+. |+.++
T Consensus 355 -p---~~vi~~-----------~i~~l~~~Gv~f~~n~~vG--------~dit~--~~l~~~~yDAV~LAtGA~~pr~l~ 409 (944)
T PRK12779 355 -P---NQLIDD-----------VVEKIKLLGGRFVKNFVVG--------KTATL--EDLKAAGFWKIFVGTGAGLPTFMN 409 (944)
T ss_pred -h---HHHHHH-----------HHHHHHhhcCeEEEeEEec--------cEEeH--HHhccccCCEEEEeCCCCCCCcCC
Confidence 0 111111 1234666799998887543 12222 333446799999999995 77665
Q ss_pred CCcCCCceEecchhhhcc----------------ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc-CCCcccH
Q psy9583 549 GVKFDENLILSNKGALEM----------------INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN-FLNTVDE 611 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~----------------~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~-~l~~~d~ 611 (866)
.++.+...+++..+++.. ...+++|+|||||.+|+|+|..+.++|++|+++++++. .++....
T Consensus 410 IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~ 489 (944)
T PRK12779 410 VPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVE 489 (944)
T ss_pred CCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHH
Confidence 555455566666555431 11468999999999999999999999999999998764 2333222
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCC--eEE-EEEe-------eCCCCc----cceeEEEeccEEEEeeccccCC
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKE--NVL-INYS-------NKSTNV----KTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~~-v~~~-------~~~g~~----~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
+ +.. ..+.||+++++..++++..+++ .+. +.+. +.+|+. .++...+++|.||+|+|+.|+.
T Consensus 490 e----~~~-a~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~ 564 (944)
T PRK12779 490 E----LHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANP 564 (944)
T ss_pred H----HHH-HHHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCCh
Confidence 2 222 3467999999999999986532 221 1111 012210 1234579999999999999997
Q ss_pred CCCCccccCeeecCCCcEEeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 678 NNLNIDKIGLKVNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 678 ~~l~l~~~gl~~~~~G~i~Vd~-~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
.+. ....+++++++|.|.||+ +++||+|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 565 ~l~-~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 565 IMK-DAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred hhh-hcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 542 344688998899999997 58999999999999999888999999999999999963
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=279.06 Aligned_cols=290 Identities=20% Similarity=0.251 Sum_probs=201.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.++|+|||||+||++||..|++.|++|+|||+. +.+||...+ ++|...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~------~~~GG~l~~--gip~~~------------------------ 190 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERA------DRIGGLLRY--GIPDFK------------------------ 190 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecC------CCCCceeee--cCCccc------------------------
Confidence 479999999999999999999999999999997 567775421 122110
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~~p 548 (866)
.. ..+.. ....++.+.|++++.++.+..+. .+ +.....||+||+|||+. |..++
T Consensus 191 --~~-~~~~~-----------~~~~~~~~~gv~~~~~~~v~~~~--------~~---~~~~~~~d~vvlAtGa~~~~~l~ 245 (471)
T PRK12810 191 --LE-KEVID-----------RRIELMEAEGIEFRTNVEVGKDI--------TA---EELLAEYDAVFLGTGAYKPRDLG 245 (471)
T ss_pred --CC-HHHHH-----------HHHHHHHhCCcEEEeCCEECCcC--------CH---HHHHhhCCEEEEecCCCCCCcCC
Confidence 00 00111 11234667899998887654211 00 11235799999999997 55544
Q ss_pred CCcCCCceEecchhhhc--------------cccCCCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcCCCcc-cH-
Q psy9583 549 GVKFDENLILSNKGALE--------------MINVPKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNFLNTV-DE- 611 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~--------------~~~~~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~l~~~-d~- 611 (866)
.++.+...+++..+++. ....+++|+|||+|++|+|+|..+.+.|. +|+++++.+...... +.
T Consensus 246 ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~ 325 (471)
T PRK12810 246 IPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNN 325 (471)
T ss_pred CCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCcccccccc
Confidence 44433344444322211 12357899999999999999999888886 688665544322111 00
Q ss_pred ---HH-HHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEe---eCCCC---ccceeEEEeccEEEEeeccccCCCCC
Q psy9583 612 ---EI-AKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYS---NKSTN---VKTEIITSIFDKLLIAIGRIPNTNNL 680 (866)
Q Consensus 612 ---~~-~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~---~~~g~---~~~~~~~~~~D~vi~a~G~~p~~~~l 680 (866)
.. .....+.+++.||++++++.++++..+++.+. +.+. ..+|. ..++..++++|.||+|+|++|+...+
T Consensus 326 ~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l 405 (471)
T PRK12810 326 PWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGL 405 (471)
T ss_pred CCcccchHHHHHHHHHcCCeEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhh
Confidence 00 11134567788999999999999986554442 3322 11220 11234689999999999999986533
Q ss_pred CccccCeeecCCCcEEeC-CCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 681 NIDKIGLKVNENNFIIVN-DNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 681 ~l~~~gl~~~~~G~i~Vd-~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
++..+++++++|++++| ++++|+.|+|||+|||++++.++..|+.+|+.||.+|..
T Consensus 406 -~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 406 -LAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDA 462 (471)
T ss_pred -ccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHH
Confidence 57788999889999998 799999999999999998888899999999999999864
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=284.28 Aligned_cols=283 Identities=20% Similarity=0.252 Sum_probs=202.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.++|+||||||||++||..|++.|++|+|||+. +.+||.+.+ .+|...
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~------~~~GG~l~~--gip~~~------------------------ 240 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDAN------EQAGGMMRY--GIPRFR------------------------ 240 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecC------CCCCceeee--cCCCCC------------------------
Confidence 478999999999999999999999999999997 677886522 122110
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc-CCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR-SFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~-~~p 548 (866)
. ...+..+ ....+.+.|+++..++.+..+ +.+ ++ ....||+||||||+.+. .++
T Consensus 241 ~---~~~~~~~-----------~~~~l~~~Gv~i~~~~~v~~d--------v~~--~~-~~~~~DaVilAtGa~~~~~~~ 295 (652)
T PRK12814 241 L---PESVIDA-----------DIAPLRAMGAEFRFNTVFGRD--------ITL--EE-LQKEFDAVLLAVGAQKASKMG 295 (652)
T ss_pred C---CHHHHHH-----------HHHHHHHcCCEEEeCCcccCc--------cCH--HH-HHhhcCEEEEEcCCCCCCCCC
Confidence 0 0011111 123356679998877653221 111 11 12359999999999854 343
Q ss_pred CCcCCCceEecchhhhc------cccCCCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCc-CCCcccHHHHHHHHHH
Q psy9583 549 GVKFDENLILSNKGALE------MINVPKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSN-FLNTVDEEIAKKAFHL 620 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~------~~~~~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~-~l~~~d~~~~~~l~~~ 620 (866)
.++.+...+++..+++. ....+++|+|||||++|+|+|..+.++|. +|++++++++ .++..+.++ .+.
T Consensus 296 ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei----~~a 371 (652)
T PRK12814 296 IPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEI----EEA 371 (652)
T ss_pred CCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH----HHH
Confidence 33334444555444432 12457999999999999999999999986 5999998875 455544443 222
Q ss_pred HHHcCCEEEeCceEEEEEEcCCeEEEE---Eee----CCCCc-----cceeEEEeccEEEEeeccccCCCCCCccccCee
Q psy9583 621 LNKQGLNIILNTKIHDIKINKENVLIN---YSN----KSTNV-----KTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688 (866)
Q Consensus 621 l~~~GV~i~~~~~v~~i~~~~~~~~v~---~~~----~~g~~-----~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~ 688 (866)
.+.||+|++++.+.++..+++.+.+. +.. .+|.. .++...+++|.||+|+|+.|+.++ ++..|++
T Consensus 372 -~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~l--l~~~gl~ 448 (652)
T PRK12814 372 -LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEAAGIG 448 (652)
T ss_pred -HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccc--ccccCcc
Confidence 35699999999999998766554332 221 12211 123457999999999999999987 5677888
Q ss_pred ecCCCcEEeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q psy9583 689 VNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 689 ~~~~G~i~Vd~-~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 736 (866)
++.+|+|.||+ +++|+.|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 449 ~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~ 497 (652)
T PRK12814 449 TSRNGTVKVDPETLQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAID 497 (652)
T ss_pred ccCCCcEeeCCCCCcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHH
Confidence 88889999997 6899999999999999888899999999999999985
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=268.80 Aligned_cols=285 Identities=22% Similarity=0.248 Sum_probs=201.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.++|+|||+||+|++||..|++.|++|+++|+. +.+||...+ ++|...+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~------~~~gG~l~~--gip~~~~----------------------- 189 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRH------PEIGGLLTF--GIPSFKL----------------------- 189 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC------CCCCceeee--cCccccC-----------------------
Confidence 478999999999999999999999999999997 678885422 2332110
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc-CCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR-SFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~-~~p 548 (866)
+ ..+.. ....++++.|++++.++.+..+ +.+ + +....||+||+|||+.+. .++
T Consensus 190 ---~-~~~~~-----------~~~~~~~~~Gv~~~~~~~v~~~--------~~~--~-~~~~~~D~vilAtGa~~~~~~~ 243 (467)
T TIGR01318 190 ---D-KAVLS-----------RRREIFTAMGIEFHLNCEVGRD--------ISL--D-DLLEDYDAVFLGVGTYRSMRGG 243 (467)
T ss_pred ---C-HHHHH-----------HHHHHHHHCCCEEECCCEeCCc--------cCH--H-HHHhcCCEEEEEeCCCCCCcCC
Confidence 0 01111 1234567789999887654211 111 1 123469999999999864 333
Q ss_pred CCcCCCceEecchhhh--------cc---------ccCCCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcC-CCcc
Q psy9583 549 GVKFDENLILSNKGAL--------EM---------INVPKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNF-LNTV 609 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~--------~~---------~~~~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~-l~~~ 609 (866)
..+.+...+++..++. .. ...+++++|||+|++|+|+|..+.++|. +||+++|++.. ++..
T Consensus 244 i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~ 323 (467)
T TIGR01318 244 LPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGS 323 (467)
T ss_pred CCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCC
Confidence 3333333444322111 01 1246899999999999999999999995 79999987764 4444
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeEE-EEEee-------CCCCc-----cceeEEEeccEEEEeecccc
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINK-ENVL-INYSN-------KSTNV-----KTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~-v~~~~-------~~g~~-----~~~~~~~~~D~vi~a~G~~p 675 (866)
+.++ +.+++.||++++++.+.++..++ +.+. +.+.. .+|.. .++...+++|.||+|+|++|
T Consensus 324 ~~e~-----~~~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p 398 (467)
T TIGR01318 324 RREV-----ANAREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQP 398 (467)
T ss_pred HHHH-----HHHHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCC
Confidence 4332 44677899999999999997653 3331 22210 12211 12345799999999999999
Q ss_pred CCCCCCccccCeeecCCCcEEeC----CCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 676 NTNNLNIDKIGLKVNENNFIIVN----DNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 676 ~~~~l~l~~~gl~~~~~G~i~Vd----~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
+...+ ++..+++++++|+|.|| ++++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 399 ~~~~~-~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 399 HAMPW-LAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILD 463 (467)
T ss_pred Ccccc-ccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 86432 56778899888999999 689999999999999998888899999999999999863
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=276.80 Aligned_cols=285 Identities=21% Similarity=0.257 Sum_probs=200.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.++|+||||||||++||..|++.|++|+|||+. +.+||...+ ++|...+
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~------~~~GG~l~~--gip~~~l----------------------- 375 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRH------PEIGGLLTF--GIPAFKL----------------------- 375 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC------CCCCceeee--cCCCccC-----------------------
Confidence 479999999999999999999999999999997 678886432 2332110
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc-CCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR-SFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~-~~p 548 (866)
+ ..++.+ ...++++.|+++..++.+..+ +.+. .....||+|++|||+... .++
T Consensus 376 ---~-~~~~~~-----------~~~~~~~~Gv~~~~~~~v~~~--------i~~~---~~~~~~DavilAtGa~~~~~l~ 429 (654)
T PRK12769 376 ---D-KSLLAR-----------RREIFSAMGIEFELNCEVGKD--------ISLE---SLLEDYDAVFVGVGTYRSMKAG 429 (654)
T ss_pred ---C-HHHHHH-----------HHHHHHHCCeEEECCCEeCCc--------CCHH---HHHhcCCEEEEeCCCCCCCCCC
Confidence 0 011111 123466789998887754321 1110 112469999999998643 333
Q ss_pred CCcCCCceEecchh--------hhcc---------ccCCCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcC-CCcc
Q psy9583 549 GVKFDENLILSNKG--------ALEM---------INVPKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNF-LNTV 609 (866)
Q Consensus 549 ~~~~~~~~~~t~~~--------~~~~---------~~~~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~-l~~~ 609 (866)
..+.+...+++..+ .... ...+++|+|||||.+|+|+|..+.++|. +|+++++++.. ++..
T Consensus 430 i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~ 509 (654)
T PRK12769 430 LPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGS 509 (654)
T ss_pred CCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCC
Confidence 32222333332211 1111 1246899999999999999999999986 69999987664 4444
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeE-EEEEe-------eCCCCc-----cceeEEEeccEEEEeecccc
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINK-ENV-LINYS-------NKSTNV-----KTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~-~v~~~-------~~~g~~-----~~~~~~~~~D~vi~a~G~~p 675 (866)
+.+ .+.+++.||++++++.++++..++ +.+ .+.+. +.+|+. .++...+++|.||+|+|+.|
T Consensus 510 ~~e-----~~~~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p 584 (654)
T PRK12769 510 KKE-----VKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNP 584 (654)
T ss_pred HHH-----HHHHHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCC
Confidence 333 345778899999999999997543 333 22221 112321 22345799999999999999
Q ss_pred CCCCCCccccCeeecCCCcEEeCC----CCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 676 NTNNLNIDKIGLKVNENNFIIVND----NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 676 ~~~~l~l~~~gl~~~~~G~i~Vd~----~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
+...+ ++..+++++.+|.|.||+ +++|++|+|||+||++.++.++..|+.+|+.||.+|..
T Consensus 585 ~~~~~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 585 HGMPW-LESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred Ccccc-ccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 86433 577889999899999996 58999999999999999888999999999999999964
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-27 Score=286.50 Aligned_cols=286 Identities=20% Similarity=0.252 Sum_probs=201.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.++|+|||||||||+||..|++.|++|+|||+. +.+||...+ .+|.. .
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~------~~~GG~l~~--gip~~------------------------r 477 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEAL------HVVGGVLQY--GIPSF------------------------R 477 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC------CCCcceeec--cCCcc------------------------C
Confidence 579999999999999999999999999999997 567775321 12211 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~~p 548 (866)
.. ..++.+ ....+++.||++..+..+.. .+.+..-. ....||+||||||+. |+.++
T Consensus 478 l~---~e~~~~-----------~~~~l~~~Gv~~~~~~~vg~--------~~~~~~l~-~~~~yDaViIATGa~~pr~l~ 534 (1006)
T PRK12775 478 LP---RDIIDR-----------EVQRLVDIGVKIETNKVIGK--------TFTVPQLM-NDKGFDAVFLGVGAGAPTFLG 534 (1006)
T ss_pred CC---HHHHHH-----------HHHHHHHCCCEEEeCCccCC--------ccCHHHHh-hccCCCEEEEecCCCCCCCCC
Confidence 00 111111 23346678999988864321 12221100 124699999999995 77665
Q ss_pred CCcCCCceEecchhhhcc---------------ccCCCeEEEECCcHHHHHHHHHHHhcCCc-EEEEecCCcCC-CcccH
Q psy9583 549 GVKFDENLILSNKGALEM---------------INVPKKLCIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNFL-NTVDE 611 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~---------------~~~~~~vvVIGgG~~glE~A~~l~~~g~~-Vtli~~~~~~l-~~~d~ 611 (866)
.++.+...+++..+++.. ...+++|+|||||++|+|+|..+.++|.+ |++++++.... +....
T Consensus 535 IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~ 614 (1006)
T PRK12775 535 IPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIE 614 (1006)
T ss_pred CCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHH
Confidence 555444556666544322 12579999999999999999999999985 88888765432 22211
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeEE-EEEe-------eCCCC----ccceeEEEeccEEEEeeccccCCC
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINK-ENVL-INYS-------NKSTN----VKTEIITSIFDKLLIAIGRIPNTN 678 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~-v~~~-------~~~g~----~~~~~~~~~~D~vi~a~G~~p~~~ 678 (866)
+ .+.+++.||++++++.+.++..++ +.+. +.+. +.+|+ ..++..++++|.||+|+|+.|+..
T Consensus 615 e-----~~~a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~ 689 (1006)
T PRK12775 615 E-----IRHAKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI 689 (1006)
T ss_pred H-----HHHHHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh
Confidence 1 245677899999999999997643 3322 2221 11221 012245799999999999999987
Q ss_pred CCCccccCeeecCCCcEEeCC-----CCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q psy9583 679 NLNIDKIGLKVNENNFIIVND-----NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 679 ~l~l~~~gl~~~~~G~i~Vd~-----~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 736 (866)
++ ....++.++.+|.|.+|+ +++||+|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 690 ~~-~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 690 IT-QSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIA 751 (1006)
T ss_pred hh-hccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHH
Confidence 63 223478888889999996 7899999999999999999999999999999999985
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=262.79 Aligned_cols=289 Identities=21% Similarity=0.245 Sum_probs=197.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.++|+|||+|++|++||..|++.|++|+|||+. +.+||.+.+ .+|...
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~------~~~gG~l~~--gip~~~------------------------ 190 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFERE------DRCGGLLMY--GIPNMK------------------------ 190 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCeEEEEecC------CCCCceeec--cCCCcc------------------------
Confidence 378999999999999999999999999999997 567775532 122110
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~~p 548 (866)
.+ ..+..+ ...++++.|++++.++.+..+. . .+.....||+|++|||+. |..++
T Consensus 191 --~~-~~~~~~-----------~~~~~~~~Gv~~~~~~~v~~~~----------~-~~~~~~~~d~VilAtGa~~~~~l~ 245 (485)
T TIGR01317 191 --LD-KAIVDR-----------RIDLLSAEGIDFVTNTEIGVDI----------S-ADELKEQFDAVVLAGGATKPRDLP 245 (485)
T ss_pred --CC-HHHHHH-----------HHHHHHhCCCEEECCCEeCCcc----------C-HHHHHhhCCEEEEccCCCCCCcCC
Confidence 00 001111 1245677899999887664211 0 011235799999999998 67665
Q ss_pred CCcCCCceEecchhhh----------------ccccCCCeEEEECCcHHHHHHHHHHHhcC-CcEEEEecCCcCCCccc-
Q psy9583 549 GVKFDENLILSNKGAL----------------EMINVPKKLCIIGAGVIGLEIGSIWRRLG-SEVTILEMSSNFLNTVD- 610 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~----------------~~~~~~~~vvVIGgG~~glE~A~~l~~~g-~~Vtli~~~~~~l~~~d- 610 (866)
.++.+...+++..+++ .....+++|+|||||++|+|+|..+.++| .+|+++++.+..+....
T Consensus 246 i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~ 325 (485)
T TIGR01317 246 IPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAK 325 (485)
T ss_pred CCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhccc
Confidence 5544444444432211 01134789999999999999988777776 47999998776543211
Q ss_pred --------H--HHHHHHHHHHHHcCCEE-EeCceEEEEEEcC-CeEE-EEE-----e-eCCCC-----ccceeEEEeccE
Q psy9583 611 --------E--EIAKKAFHLLNKQGLNI-ILNTKIHDIKINK-ENVL-INY-----S-NKSTN-----VKTEIITSIFDK 666 (866)
Q Consensus 611 --------~--~~~~~l~~~l~~~GV~i-~~~~~v~~i~~~~-~~~~-v~~-----~-~~~g~-----~~~~~~~~~~D~ 666 (866)
. +.....++..+..|+.+ ++++.+.++..++ +.+. +.+ . +.+|+ ..++..++++|.
T Consensus 326 ~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~ 405 (485)
T TIGR01317 326 DNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADL 405 (485)
T ss_pred ccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCE
Confidence 1 12222344444467654 5688888887653 3332 222 1 12332 122345799999
Q ss_pred EEEeeccc-cCCCCCCccccCeeecCCCcEE-eCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 667 LLIAIGRI-PNTNNLNIDKIGLKVNENNFII-VNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 667 vi~a~G~~-p~~~~l~l~~~gl~~~~~G~i~-Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
||+|+|+. |+..+ ++..+++++.+|++. +|++++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 406 Vi~AiG~~~p~~~~--~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 406 VLLAMGFVGPEQIL--LDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred EEEccCcCCCcccc--ccccCcccCCCCCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999996 88876 577789888889885 56789999999999999998888899999999999999853
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-26 Score=269.12 Aligned_cols=285 Identities=21% Similarity=0.250 Sum_probs=199.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+|+||||||||+++|..|++.|++|++||+. +.+||.+.+ | +|.. .
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~------~~~GG~l~~-g-ip~~------------------------~ 357 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRH------PEIGGMLTF-G-IPPF------------------------K 357 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCC------CCCCCeeec-c-CCcc------------------------c
Confidence 588999999999999999999999999999998 677876422 2 2211 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc-CCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR-SFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~-~~p 548 (866)
++. .++. ....++++.|++++.++.+..+ +.+ . .....||+|++|||+.+. .++
T Consensus 358 --l~~-~~~~-----------~~~~~~~~~Gv~~~~~~~v~~~--------~~~--~-~l~~~~DaV~latGa~~~~~~~ 412 (639)
T PRK12809 358 --LDK-TVLS-----------QRREIFTAMGIDFHLNCEIGRD--------ITF--S-DLTSEYDAVFIGVGTYGMMRAD 412 (639)
T ss_pred --CCH-HHHH-----------HHHHHHHHCCeEEEcCCccCCc--------CCH--H-HHHhcCCEEEEeCCCCCCCCCC
Confidence 110 0111 1134567789999887754321 111 1 123469999999999754 333
Q ss_pred CCcCCCceEecch--------hhhcc---------ccCCCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcC-CCcc
Q psy9583 549 GVKFDENLILSNK--------GALEM---------INVPKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNF-LNTV 609 (866)
Q Consensus 549 ~~~~~~~~~~t~~--------~~~~~---------~~~~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~-l~~~ 609 (866)
..+.+...+++.. +.... ...+++++|+|+|.++++.|..+.++|. +|+++++++.. ++..
T Consensus 413 i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~ 492 (639)
T PRK12809 413 LPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGS 492 (639)
T ss_pred CCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCC
Confidence 3332333333321 11111 1246899999999999999999889985 79999988765 4444
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeEE-EEE---ee----CCCC-----ccceeEEEeccEEEEeecccc
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINK-ENVL-INY---SN----KSTN-----VKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~-v~~---~~----~~g~-----~~~~~~~~~~D~vi~a~G~~p 675 (866)
+.++. .+++.||++++++.++++..++ +.+. +.+ .. .+|+ ..++...+++|.||+|+|++|
T Consensus 493 ~~e~~-----~a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p 567 (639)
T PRK12809 493 RKEVV-----NAREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQA 567 (639)
T ss_pred HHHHH-----HHHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCC
Confidence 43332 3567899999999999997654 3332 222 11 1221 122356899999999999999
Q ss_pred CCCCCCccccCeeecCCCcEEeCC----CCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 676 NTNNLNIDKIGLKVNENNFIIVND----NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 676 ~~~~l~l~~~gl~~~~~G~i~Vd~----~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
+...+ +++.+++++++|+|.||+ +++|+.|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 568 ~~~~~-~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 568 HAMPW-LQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred Ccccc-ccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 76433 577889999899999986 48999999999999998888999999999999999874
|
|
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-26 Score=237.89 Aligned_cols=289 Identities=18% Similarity=0.280 Sum_probs=208.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+|||+|+|.+|.+....|-..-++|++|+...++.+-+-+-.+| -
T Consensus 55 Kk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~---------------------------------v 101 (491)
T KOG2495|consen 55 KKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTT---------------------------------V 101 (491)
T ss_pred CceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCcc---------------------------------c
Confidence 5789999999999999999988899999999764322222221111 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHh--CCcEEEEeEEEEeccccCcccEEEEEc--CCc----eEEEecEEEEecC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKK--NKIKFFHGHAIFTGKIQNNFHEIQIIN--KTK----ETITAKYIIIATG 541 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gV~v~~g~~v~~~~~~~~~~~v~v~~--~~g----~~i~~d~lViATG 541 (866)
-.+++..+.+..+. ...+ .++.++......+|+ +.+.+.++. .++ ..+.||+||+|+|
T Consensus 102 GTve~rSIvEPIr~-----------i~r~k~~~~~y~eAec~~iDp---~~k~V~~~s~t~~~~~~e~~i~YDyLViA~G 167 (491)
T KOG2495|consen 102 GTVELRSIVEPIRA-----------IARKKNGEVKYLEAECTKIDP---DNKKVHCRSLTADSSDKEFVIGYDYLVIAVG 167 (491)
T ss_pred cceeehhhhhhHHH-----------HhhccCCCceEEecccEeecc---cccEEEEeeeccCCCcceeeecccEEEEecc
Confidence 12333333333221 2222 267777777777766 556665543 334 6799999999999
Q ss_pred CCCcCCCCCcC--CCceEecchhhhccc----------cC----------CCeEEEECCcHHHHHHHHHHHhc-------
Q psy9583 542 SKARSFPGVKF--DENLILSNKGALEMI----------NV----------PKKLCIIGAGVIGLEIGSIWRRL------- 592 (866)
Q Consensus 542 s~p~~~p~~~~--~~~~~~t~~~~~~~~----------~~----------~~~vvVIGgG~~glE~A~~l~~~------- 592 (866)
+.+..+..++. .+.+.-...++.+++ .. --+++|||||++|+|+|..|+.+
T Consensus 168 A~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k 247 (491)
T KOG2495|consen 168 AEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRK 247 (491)
T ss_pred CCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHH
Confidence 99886543332 222222333333331 11 13789999999999999998865
Q ss_pred -------CCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEecc
Q psy9583 593 -------GSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665 (866)
Q Consensus 593 -------g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D 665 (866)
-.+||+++..+.+|+.||..+.++.++.+.+.||.+++++.|..+.... +....++|+ ..++++-
T Consensus 248 ~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~----I~~~~~~g~----~~~iPYG 319 (491)
T KOG2495|consen 248 IYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT----IHAKTKDGE----IEEIPYG 319 (491)
T ss_pred hhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhhccceeecccEEEeecCcE----EEEEcCCCc----eeeecce
Confidence 2379999999999999999999999999999999999999999987543 455544665 5789999
Q ss_pred EEEEeeccccCCCCCCccccCeeecCCC--cEEeCCCCCC-CCCCEEEecccCC---CCCcHHHHHHHHHHHHHHHh
Q psy9583 666 KLLIAIGRIPNTNNLNIDKIGLKVNENN--FIIVNDNCET-NIPNIYAIGDVVR---GPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 666 ~vi~a~G~~p~~~~l~l~~~gl~~~~~G--~i~Vd~~l~T-s~~~VyA~GD~a~---~~~~~~~A~~~g~~aa~~i~ 736 (866)
+++|++|..|..-. ..+.-.+++.| ++.||++||. +.+||||+|||+. .+++++.|.+||.++|+++-
T Consensus 320 ~lVWatG~~~rp~~---k~lm~~i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 320 LLVWATGNGPRPVI---KDLMKQIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred EEEecCCCCCchhh---hhHhhcCCccCceeeeeeceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence 99999998876533 33334444444 7999999995 7999999999993 34589999999999999973
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-26 Score=231.55 Aligned_cols=297 Identities=23% Similarity=0.314 Sum_probs=207.9
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
.+..|||+||||||||-+||.+.+|.|.+.=++- .++||..+-.-.+ +.+. +++
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--------erfGGQvldT~~I------------ENfI------sv~ 261 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--------ERFGGQVLDTMGI------------ENFI------SVP 261 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--------hhhCCeeccccch------------hhee------ccc
Confidence 3446999999999999999999999999977774 3578875321100 0000 000
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
.-+-. ++...++...+++.|+++...... +.+-.......+|+..+|-.++++.+|+|||++.+
T Consensus 262 ----~teGp-----------kl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWR 326 (520)
T COG3634 262 ----ETEGP-----------KLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWR 326 (520)
T ss_pred ----cccch-----------HHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchh
Confidence 00111 122234555677777776544433 22212233566777788889999999999999877
Q ss_pred CC--CCCc-CCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHH
Q psy9583 546 SF--PGVK-FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622 (866)
Q Consensus 546 ~~--p~~~-~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~ 622 (866)
.. |+.. +....+-.+..+.-....+|+|+|||||.+|+|.|..|+-.-.+||+++-.+.+-. | ..+++.|+
T Consensus 327 n~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA--D----~VLq~kl~ 400 (520)
T COG3634 327 NMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA--D----AVLQDKLR 400 (520)
T ss_pred cCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh--H----HHHHHHHh
Confidence 44 4432 23333443444444445689999999999999999999998889999987665432 2 33444554
Q ss_pred H-cCCEEEeCceEEEEEEcCCeEE-EEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC
Q psy9583 623 K-QGLNIILNTKIHDIKINKENVL-INYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND 699 (866)
Q Consensus 623 ~-~GV~i~~~~~v~~i~~~~~~~~-v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~ 699 (866)
+ .++.++++..-++|.++++++. +.+.+ .+|. ...+.-+-|++-+|..||+++ |+.. ++++++|-|.||.
T Consensus 401 sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge----~~~l~LeGvFVqIGL~PNT~W--Lkg~-vel~~rGEIivD~ 473 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGE----EHHLELEGVFVQIGLLPNTEW--LKGA-VELNRRGEIIVDA 473 (520)
T ss_pred cCCCcEEEecceeeEEecCCceecceEEEeccCCc----eeEEEeeeeEEEEecccChhH--hhch-hhcCcCccEEEec
Confidence 4 5899999999999999876654 34432 2332 567888899999999999999 4665 8999999999999
Q ss_pred CCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHhC
Q psy9583 700 NCETNIPNIYAIGDVVRGP-MLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~~~-~~~~~A~~~g~~aa~~i~g 737 (866)
+..||+|+|||+|||+..| +....|+.+|..|+-+.+.
T Consensus 474 ~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFD 512 (520)
T COG3634 474 RGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFD 512 (520)
T ss_pred CCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhh
Confidence 9999999999999999754 5666677777777766543
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=245.13 Aligned_cols=325 Identities=23% Similarity=0.284 Sum_probs=241.2
Q ss_pred HhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCCCcCCCceEe-cchhhhccc---cCCC
Q psy9583 497 KKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLIL-SNKGALEMI---NVPK 571 (866)
Q Consensus 497 ~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~~~~~~~~~~-t~~~~~~~~---~~~~ 571 (866)
.+.++++..++.+. ++. ..+.+.+ .++ .+.||+|++|||++|..++.......... ...+..... ...+
T Consensus 64 ~~~~i~~~~~~~v~~id~---~~~~v~~--~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (415)
T COG0446 64 RATGIDVRTGTEVTSIDP---ENKVVLL--DDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPK 137 (415)
T ss_pred HhhCCEEeeCCEEEEecC---CCCEEEE--CCC-cccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHHHhccC
Confidence 45688888877666 443 4455555 445 89999999999999997762222222222 222222221 1258
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCccc-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEE-Ee
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVD-EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLIN-YS 649 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~-~~ 649 (866)
+++|+|+|++|+|+|..+.+.|++|++++..+++++.+. +++.+.+.+.|+++||+++++..+.+++...+..... ..
T Consensus 138 ~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~ 217 (415)
T COG0446 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVV 217 (415)
T ss_pred eEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEE
Confidence 999999999999999999999999999999999998777 9999999999999999999999999999876543321 22
Q ss_pred eCCCCccceeEEEeccEEEEeeccccCCCCCCccccC-eeecCCCcEEeCCCCCCC-CCCEEEecccCCC----------
Q psy9583 650 NKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG-LKVNENNFIIVNDNCETN-IPNIYAIGDVVRG---------- 717 (866)
Q Consensus 650 ~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~g-l~~~~~G~i~Vd~~l~Ts-~~~VyA~GD~a~~---------- 717 (866)
..++. .+++|.+++++|.+||..+ ..+.+ .....+|+|.||++++|+ .++|||+|||+..
T Consensus 218 ~~~~~------~~~~d~~~~~~g~~p~~~l--~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~ 289 (415)
T COG0446 218 GIDGE------EIKADLVIIGPGERPNVVL--ANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGR 289 (415)
T ss_pred EeCCc------EEEeeEEEEeecccccHHH--HhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceee
Confidence 22454 8999999999999999766 34443 144557889999999998 9999999999853
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCCCCCccE--EEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhc-CCce
Q psy9583 718 PMLAHKAEEEGIMVAEHISGQKHSINFNALPF--VIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARIL-GETS 794 (866)
Q Consensus 718 ~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 794 (866)
...++.|..++++++.++.+. ..+ ....++ ....+......|+++. ....++ ...........+.... ....
T Consensus 290 ~~~~~~a~~~~~i~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 364 (415)
T COG0446 290 IALWAIAVAAGRIAAENIAGA-LRI-PGLLGTVISDVGDLCAASTGLTEG--KERGID-VVLVVSGGKDPRAHLYPGAEL 364 (415)
T ss_pred eechhhHhhhhHHHHHHhccc-ccc-ccccCceEEEEcCeEEEEecCCcc--ccccee-eeEEEeccCcccccccCCCCe
Confidence 246789999999999999987 332 233343 4456778899999987 444555 3333333334344333 3345
Q ss_pred EEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHcccc
Q psy9583 795 GMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARIC 842 (866)
Q Consensus 795 g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~ 842 (866)
...|++++.++++++|+++ -. ....++.+..++..+.++.++....
T Consensus 365 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (415)
T COG0446 365 VGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDALD 410 (415)
T ss_pred EEEEEEEcCcccceehhhh-HH-HHhhhhhhhhhhhhcCchhhhhhcc
Confidence 6789999989999999999 33 6678899999999999998887653
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=262.00 Aligned_cols=285 Identities=22% Similarity=0.323 Sum_probs=191.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
+.++|+|||+|+||+++|..|++.|++|+|+|+. +..||...+ .+|... +
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~------~~~gG~~~~--~i~~~~-------------------~--- 331 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESL------SKPGGVMRY--GIPSYR-------------------L--- 331 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecC------CCCCceEee--cCCccc-------------------C---
Confidence 3578999999999999999999999999999997 566765321 122110 0
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARSF 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~~ 547 (866)
...+..+ ...++++.|++++.++.+..+. .+ + .....||+||+|||+. |+.+
T Consensus 332 -----~~~~~~~-----------~~~~~~~~gv~~~~~~~v~~~~--------~~--~-~~~~~yD~vilAtGa~~~r~l 384 (604)
T PRK13984 332 -----PDEALDK-----------DIAFIEALGVKIHLNTRVGKDI--------PL--E-ELREKHDAVFLSTGFTLGRST 384 (604)
T ss_pred -----CHHHHHH-----------HHHHHHHCCcEEECCCEeCCcC--------CH--H-HHHhcCCEEEEEcCcCCCccC
Confidence 0111111 1235677899998887653211 01 1 1235799999999987 4555
Q ss_pred CCCcCCCceEecchhhhcc-----------ccCCCeEEEECCcHHHHHHHHHHHhcCC------cEEEEecC--CcCCCc
Q psy9583 548 PGVKFDENLILSNKGALEM-----------INVPKKLCIIGAGVIGLEIGSIWRRLGS------EVTILEMS--SNFLNT 608 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~-----------~~~~~~vvVIGgG~~glE~A~~l~~~g~------~Vtli~~~--~~~l~~ 608 (866)
+.++.+...+++..+.+.. ...+++++|||||++|+|+|..+.+++. +|+++... ...++.
T Consensus 385 ~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~ 464 (604)
T PRK13984 385 RIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPA 464 (604)
T ss_pred CCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCC
Confidence 5444444445544433321 1236899999999999999999998853 68876432 222333
Q ss_pred ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEe------eCCCCc-----cceeEEEeccEEEEeeccccC
Q psy9583 609 VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYS------NKSTNV-----KTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 609 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~------~~~g~~-----~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.+.+ +.+ +.+.||+++++..+.++..+++.+. +.+. +.+|+. .++...+++|.|++|+|++|+
T Consensus 465 ~~~e----~~~-~~~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~ 539 (604)
T PRK13984 465 DMEE----IEE-GLEEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPD 539 (604)
T ss_pred CHHH----HHH-HHHcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCC
Confidence 2222 222 3457999999999988875544432 2222 112211 123457999999999999999
Q ss_pred CCCCCcc-ccCeeecCCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 677 TNNLNID-KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 677 ~~~l~l~-~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
++++..+ ..+++++ +|+|.||++++|++|+|||+|||+.++.+ ..|+.+|+.||.+|..
T Consensus 540 ~~~l~~~~~~~l~~~-~G~i~vd~~~~Ts~~gVfAaGD~~~~~~~-v~Ai~~G~~AA~~I~~ 599 (604)
T PRK13984 540 YSYLPEELKSKLEFV-RGRILTNEYGQTSIPWLFAGGDIVHGPDI-IHGVADGYWAAEGIDM 599 (604)
T ss_pred hhhhhhhhccCcccc-CCeEEeCCCCccCCCCEEEecCcCCchHH-HHHHHHHHHHHHHHHH
Confidence 9875311 1245554 78899999999999999999999987754 6799999999999853
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=241.02 Aligned_cols=293 Identities=15% Similarity=0.193 Sum_probs=195.5
Q ss_pred ccceeeecCCccHHHHHHHHHH--CCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ--LGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~--~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
..+|+||||||||++||..|++ .|++|+|||+. +.+||... .|..|.+..
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~------p~pgGlvr-~gvaP~~~~--------------------- 77 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERL------PTPFGLVR-SGVAPDHPE--------------------- 77 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecC------CCCcceEe-eccCCCcch---------------------
Confidence 4789999999999999999987 69999999998 67777543 232232111
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCC-cC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA-RS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p-~~ 546 (866)
...+ ...+..+++..+++++.+..+.. .+.+ ++ ....||+||||||+.+ ..
T Consensus 78 ------~k~v-----------~~~~~~~~~~~~v~~~~nv~vg~--------dvtl--~~-L~~~yDaVIlAtGa~~~~~ 129 (491)
T PLN02852 78 ------TKNV-----------TNQFSRVATDDRVSFFGNVTLGR--------DVSL--SE-LRDLYHVVVLAYGAESDRR 129 (491)
T ss_pred ------hHHH-----------HHHHHHHHHHCCeEEEcCEEECc--------cccH--HH-HhhhCCEEEEecCCCCCCC
Confidence 0000 11123345567888776543321 1122 11 2346999999999986 44
Q ss_pred CCCCcCCCceEecchhhhccc-------------cCCCeEEEECCcHHHHHHHHHHHhc--------------------C
Q psy9583 547 FPGVKFDENLILSNKGALEMI-------------NVPKKLCIIGAGVIGLEIGSIWRRL--------------------G 593 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~-------------~~~~~vvVIGgG~~glE~A~~l~~~--------------------g 593 (866)
++.++.+...+++..++..+. ..+++++|||+|++|+|+|..|.+. |
T Consensus 130 l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~ 209 (491)
T PLN02852 130 LGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSS 209 (491)
T ss_pred CCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCC
Confidence 544444555677665553211 2468999999999999999998875 5
Q ss_pred C-cEEEEecCCcCCCcc-cHHHH-------------------------------------HHHHHHHHH---------cC
Q psy9583 594 S-EVTILEMSSNFLNTV-DEEIA-------------------------------------KKAFHLLNK---------QG 625 (866)
Q Consensus 594 ~-~Vtli~~~~~~l~~~-d~~~~-------------------------------------~~l~~~l~~---------~G 625 (866)
. +|+++.|+...-..| ..++. +.+.+...+ ++
T Consensus 210 ~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~ 289 (491)
T PLN02852 210 VRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRE 289 (491)
T ss_pred CCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCce
Confidence 4 599999987432111 11211 122222222 57
Q ss_pred CEEEeCceEEEEEEc--C-CeE-EEEEee-----C--CCC----ccceeEEEeccEEEEeeccc--cCCCCCCccccCee
Q psy9583 626 LNIILNTKIHDIKIN--K-ENV-LINYSN-----K--STN----VKTEIITSIFDKLLIAIGRI--PNTNNLNIDKIGLK 688 (866)
Q Consensus 626 V~i~~~~~v~~i~~~--~-~~~-~v~~~~-----~--~g~----~~~~~~~~~~D~vi~a~G~~--p~~~~l~l~~~gl~ 688 (866)
|.|++...+++|..+ + +.+ .+.+.. . +|. ..++...+++|.||.++|++ |...+......++.
T Consensus 290 v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~ 369 (491)
T PLN02852 290 LHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVV 369 (491)
T ss_pred EEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCee
Confidence 999999999999742 1 222 233321 1 121 13446689999999999998 55543112334677
Q ss_pred ecCCCcEEeCCCCCCCCCCEEEecccCCCCC-cHHHHHHHHHHHHHHHhCC
Q psy9583 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPM-LAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 689 ~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~-~~~~A~~~g~~aa~~i~g~ 738 (866)
.+.+|+|.+|+.++|+.|||||+|||..+|. +...++.+|+.++.+|+..
T Consensus 370 ~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 370 PNVHGRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAED 420 (491)
T ss_pred ECCCceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHH
Confidence 7888999999989999999999999998775 8889999999999999753
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-25 Score=226.81 Aligned_cols=411 Identities=17% Similarity=0.215 Sum_probs=260.4
Q ss_pred ccceeeecCCccHHHHHHHHHHC--CCeEEEEeccC-CCcccccCCC-ccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWK-DNEENFALGG-TCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~-~~~~~~~~GG-~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
+.-.+|||+|.+..+++...+.. +.+|.+|..++ .||-++.+.- .|.+..-.+.+.+. +..+.-
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lr------------fkqwsG 245 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLR------------FKQWSG 245 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhhee------------ecccCC
Confidence 46689999999998887776655 67898887663 4666665531 11111111111110 000000
Q ss_pred cccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 466 NTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
......+....++-...+. .....-||.+.+|..+. ++. .++.+.+ ++|.+|.||+++||||.+|
T Consensus 246 keRsiffepd~FfvspeDL---------p~~~nGGvAvl~G~kvvkid~---~d~~V~L--nDG~~I~YdkcLIATG~~P 311 (659)
T KOG1346|consen 246 KERSIFFEPDGFFVSPEDL---------PKAVNGGVAVLRGRKVVKIDE---EDKKVIL--NDGTTIGYDKCLIATGVRP 311 (659)
T ss_pred ccceeEecCCcceeChhHC---------cccccCceEEEeccceEEeec---ccCeEEe--cCCcEeehhheeeecCcCc
Confidence 0000111111111111000 01234589999998877 444 3344444 6889999999999999999
Q ss_pred cCCCCCcCCC-------ceEecchhhhcccc---CCCeEEEECCcHHHHHHHHHHHhc----CCcEEEEecCCcCCC-cc
Q psy9583 545 RSFPGVKFDE-------NLILSNKGALEMIN---VPKKLCIIGAGVIGLEIGSIWRRL----GSEVTILEMSSNFLN-TV 609 (866)
Q Consensus 545 ~~~p~~~~~~-------~~~~t~~~~~~~~~---~~~~vvVIGgG~~glE~A~~l~~~----g~~Vtli~~~~~~l~-~~ 609 (866)
..++.+.... ..+.+..|+.++.. .-++|.|||+|++|.|+|..|.+. |.+|+-+......+. -+
T Consensus 312 k~l~~~~~A~~evk~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiL 391 (659)
T KOG1346|consen 312 KKLQVFEEASEEVKQKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKIL 391 (659)
T ss_pred ccchhhhhcCHHhhhheeEEecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhh
Confidence 8765443211 13445666666543 348999999999999999999864 678887765554443 56
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeee
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~ 689 (866)
+.-++++-.+.+++.||.++.+..|.++......+.+.+. +|. ++..|+|++|+|-.||+++ .+..|+++
T Consensus 392 Peyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~--dG~------~l~tD~vVvavG~ePN~el--a~~sgLei 461 (659)
T KOG1346|consen 392 PEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLS--DGS------ELRTDLVVVAVGEEPNSEL--AEASGLEI 461 (659)
T ss_pred HHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEec--CCC------eeeeeeEEEEecCCCchhh--ccccccee
Confidence 7778889999999999999999999999887777777775 787 9999999999999999999 68889999
Q ss_pred cCC-CcEEeCCCCCCCCCCEEEecccCCCC---------CcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEE-ccCcee
Q psy9583 690 NEN-NFIIVNDNCETNIPNIYAIGDVVRGP---------MLAHKAEEEGIMVAEHISGQKHSINFNALPFVIY-TFPEIA 758 (866)
Q Consensus 690 ~~~-G~i~Vd~~l~Ts~~~VyA~GD~a~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~-~~~~~a 758 (866)
|++ |++.||..|+.. .|||++||++... -.+.+|.-.||.|++||.|...++.... .+|+ ..|+++
T Consensus 462 D~~lGGfrvnaeL~ar-~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAakpy~hqs--mFWsdlgP~ig 538 (659)
T KOG1346|consen 462 DEKLGGFRVNAELKAR-ENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQS--MFWSDLGPEIG 538 (659)
T ss_pred ecccCcEEeeheeecc-cceeeecchhhhhcccccceeccccccceeeceecccccccccCCccccc--eeeeccCcccc
Confidence 875 779999999986 7999999999643 2356789999999999998655432222 2221 113222
Q ss_pred --eeecCHH------------------HHHhc-CCcEEEEEE--------ecCCchhhhh--cCCceEEEE-EEEECCCC
Q psy9583 759 --SVGKTEQ------------------YLKKH-NISYNVGIF--------PFLANSRARI--LGETSGMVK-ILSDMKSD 806 (866)
Q Consensus 759 --~vGl~e~------------------~a~~~-~~~~~~~~~--------~~~~~~~~~~--~~~~~g~~k-li~~~~~~ 806 (866)
.+|+-+. ++.+. +-++..... ....+..+.. ..+...|=| +||-.+++
T Consensus 539 yeaIGlvDSSLpTVgVfA~p~s~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~ 618 (659)
T KOG1346|consen 539 YEAIGLVDSSLPTVGVFALPSSATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDD 618 (659)
T ss_pred cceeeecccCCCcceeeeccccccchhhhhhccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCC
Confidence 2222221 11111 111111000 0000000000 111122323 45555789
Q ss_pred cEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccc
Q psy9583 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARI 841 (866)
Q Consensus 807 ~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~ 841 (866)
.|+|+.++.-- ..|...-..|..+...+||.+.
T Consensus 619 ~iVGilLwN~F--nr~~~AR~II~d~kk~ddlnEv 651 (659)
T KOG1346|consen 619 KIVGILLWNLF--NRIGLARTIINDNKKYDDLNEV 651 (659)
T ss_pred cEEEEEehhhh--ccchhhHHHhccccchhhHHHH
Confidence 99999998764 2566677788889888888654
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=245.26 Aligned_cols=282 Identities=22% Similarity=0.277 Sum_probs=193.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+|+|||+||+|+++|..|++.|++|+++|+. +.+||...+ .+|...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~------~~~GG~l~~--gip~~~------------------------ 184 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG------PKLGGMMRY--GIPAYR------------------------ 184 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC------CCCCCeeee--cCCCcc------------------------
Confidence 478999999999999999999999999999998 678875421 122111
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc-CCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR-SFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~-~~p 548 (866)
.. ...... -...+.+.|+++..+..+..+. .. ......||+|++|||+.+. .++
T Consensus 185 ~~---~~~~~~-----------~l~~~~~~Gv~~~~~~~~~~~~--------~~---~~~~~~~D~Vi~AtG~~~~~~~~ 239 (564)
T PRK12771 185 LP---REVLDA-----------EIQRILDLGVEVRLGVRVGEDI--------TL---EQLEGEFDAVFVAIGAQLGKRLP 239 (564)
T ss_pred CC---HHHHHH-----------HHHHHHHCCCEEEeCCEECCcC--------CH---HHHHhhCCEEEEeeCCCCCCcCC
Confidence 00 001111 1223556788888776542111 00 0011248999999998753 222
Q ss_pred CCcCCCceEecchhhhc------cccCCCeEEEECCcHHHHHHHHHHHhcC-CcEEEEecCCcC-CCcccHHHHHHHHHH
Q psy9583 549 GVKFDENLILSNKGALE------MINVPKKLCIIGAGVIGLEIGSIWRRLG-SEVTILEMSSNF-LNTVDEEIAKKAFHL 620 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~------~~~~~~~vvVIGgG~~glE~A~~l~~~g-~~Vtli~~~~~~-l~~~d~~~~~~l~~~ 620 (866)
..+.....++...++.. ....+++++|+|+|.++++.+..+.+++ .+|+++++.+.. ++..+.++ +.
T Consensus 240 i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~-----~~ 314 (564)
T PRK12771 240 IPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEI-----EE 314 (564)
T ss_pred CCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHH-----HH
Confidence 22222222333222221 1234789999999999999999999998 679999887653 33333332 23
Q ss_pred HHHcCCEEEeCceEEEEEEcCCeE-EE---EEee----CCCCc---cceeEEEeccEEEEeeccccCCCCCCccc-cCee
Q psy9583 621 LNKQGLNIILNTKIHDIKINKENV-LI---NYSN----KSTNV---KTEIITSIFDKLLIAIGRIPNTNNLNIDK-IGLK 688 (866)
Q Consensus 621 l~~~GV~i~~~~~v~~i~~~~~~~-~v---~~~~----~~g~~---~~~~~~~~~D~vi~a~G~~p~~~~l~l~~-~gl~ 688 (866)
+.+.||+++++..+.++..++++. .+ .+.. .+|.. .++..++++|.||+|+|+.|+.+++ ++ .++.
T Consensus 315 a~~~GVki~~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~--~~~~gl~ 392 (564)
T PRK12771 315 ALREGVEINWLRTPVEIEGDENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGL--ESVPGVE 392 (564)
T ss_pred HHHcCCEEEecCCcEEEEcCCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhh--hhccCcc
Confidence 456799999999999998665432 11 1211 12210 2334689999999999999998874 43 5677
Q ss_pred ecCCCcEEeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q psy9583 689 VNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 689 ~~~~G~i~Vd~-~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 736 (866)
+++|+|.||+ +++|++|+|||+|||+.++.++..|+.+|+.||.+|.
T Consensus 393 -~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 393 -VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred -cCCCCEEeCCCCccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 7789999998 7899999999999999889999999999999999984
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-23 Score=255.47 Aligned_cols=283 Identities=15% Similarity=0.137 Sum_probs=190.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.+||+||||||||++||..|++.|++|+|||+. +.+||....... .++
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~------~~~GG~~~~~~~-----------------------~~~--- 210 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQ------PEAGGSLLSEAE-----------------------TID--- 210 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecC------CCCCCeeecccc-----------------------ccC---
Confidence 589999999999999999999999999999997 567886532210 000
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEE-------------c-CCceEEEec
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQII-------------N-KTKETITAK 534 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~-------------~-~~g~~i~~d 534 (866)
..+...+.. .....++.. +++++.++.+..-. .......+. . +....+.||
T Consensus 211 -g~~~~~~~~-----------~~~~~l~~~~~v~v~~~t~V~~i~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~ 276 (985)
T TIGR01372 211 -GKPAADWAA-----------ATVAELTAMPEVTLLPRTTAFGYY--DHNTVGALERVTDHLDAPPKGVPRERLWRIRAK 276 (985)
T ss_pred -CccHHHHHH-----------HHHHHHhcCCCcEEEcCCEEEEEe--cCCeEEEEEEeeeccccccCCccccceEEEEcC
Confidence 001111111 012223334 58888776554210 000000010 0 011368999
Q ss_pred EEEEecCCCCcCCCCCcCCCceEecchhhhccc-----cCCCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcCCCc
Q psy9583 535 YIIIATGSKARSFPGVKFDENLILSNKGALEMI-----NVPKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNFLNT 608 (866)
Q Consensus 535 ~lViATGs~p~~~p~~~~~~~~~~t~~~~~~~~-----~~~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~l~~ 608 (866)
+||||||+.++.+|.++.+...+++...+..+. ..+++++|||+|++|+|+|..|.+.|. .|+++++.+.+
T Consensus 277 ~VILATGa~~r~~pipG~~~pgV~~~~~~~~~l~~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--- 353 (985)
T TIGR01372 277 RVVLATGAHERPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--- 353 (985)
T ss_pred EEEEcCCCCCcCCCCCCCCCCCcEEchHHHHHHHhhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch---
Confidence 999999999987776665555666554333221 246899999999999999999999995 57888776543
Q ss_pred ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccC--
Q psy9583 609 VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG-- 686 (866)
Q Consensus 609 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~g-- 686 (866)
...+.+.|++.||++++++.++++..++....+++...++. ..++++|.|+++.|++||++++ ..++
T Consensus 354 -----~~~l~~~L~~~GV~i~~~~~v~~i~g~~~v~~V~l~~~~g~----~~~i~~D~V~va~G~~Pnt~L~--~~lg~~ 422 (985)
T TIGR01372 354 -----SPEARAEARELGIEVLTGHVVAATEGGKRVSGVAVARNGGA----GQRLEADALAVSGGWTPVVHLF--SQRGGK 422 (985)
T ss_pred -----hHHHHHHHHHcCCEEEcCCeEEEEecCCcEEEEEEEecCCc----eEEEECCEEEEcCCcCchhHHH--HhcCCC
Confidence 23456778999999999999999986654333445421222 3479999999999999999884 4444
Q ss_pred eeecCCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q psy9583 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 687 l~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 736 (866)
+.+++.....+. .|++|+||++|||++.. .+..|..+|+.||..++
T Consensus 423 ~~~~~~~~~~~~---~t~v~gVyaaGD~~g~~-~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 423 LAWDAAIAAFLP---GDAVQGCILAGAANGLF-GLAAALADGAAAGAAAA 468 (985)
T ss_pred eeeccccCceec---CCCCCCeEEeeccCCcc-CHHHHHHHHHHHHHHHH
Confidence 333332111111 37899999999999554 66779999999999885
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >KOG0404|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-24 Score=201.16 Aligned_cols=298 Identities=21% Similarity=0.287 Sum_probs=198.6
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|..+.+|+|||+|||+.+||+++++..++-+|||..- ...-..||+....- ..+. + .|++
T Consensus 5 ~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~--~~~i~pGGQLtTTT------------~veN----f--PGFP 64 (322)
T KOG0404|consen 5 MTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMM--ANGIAPGGQLTTTT------------DVEN----F--PGFP 64 (322)
T ss_pred ceeeeeEEEEccCchHHHHHHHHhhcccCceEEeeee--ccCcCCCceeeeee------------cccc----C--CCCC
Confidence 4444689999999999999999999999999999741 01112355432110 0000 0 1122
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
. .+.-..+.++ +.....+.|.+++..++..++. ....+.+.+ +.+.+.+|.+|+|||+..+.
T Consensus 65 d---gi~G~~l~d~-----------mrkqs~r~Gt~i~tEtVskv~~---sskpF~l~t-d~~~v~~~avI~atGAsAkR 126 (322)
T KOG0404|consen 65 D---GITGPELMDK-----------MRKQSERFGTEIITETVSKVDL---SSKPFKLWT-DARPVTADAVILATGASAKR 126 (322)
T ss_pred c---ccccHHHHHH-----------HHHHHHhhcceeeeeehhhccc---cCCCeEEEe-cCCceeeeeEEEecccceee
Confidence 1 1111222222 2334667789988887666544 335566655 34679999999999988764
Q ss_pred --CCCCcCCC---ceEecchhhh--ccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHH
Q psy9583 547 --FPGVKFDE---NLILSNKGAL--EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFH 619 (866)
Q Consensus 547 --~p~~~~~~---~~~~t~~~~~--~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~ 619 (866)
+|+.+... ..+-.+.-+. ......|-++|||||.+++|-|.+|.+.+.+|++++|++.+... ....++
T Consensus 127 l~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs-----~~Mq~r 201 (322)
T KOG0404|consen 127 LHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS-----KIMQQR 201 (322)
T ss_pred eecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH-----HHHHHH
Confidence 44442111 1111111111 11134688999999999999999999999999999999987541 122234
Q ss_pred HHHHcCCEEEeCceEEEEEEcCCeEE-EEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEe
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKENVL-INYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIV 697 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~V 697 (866)
.++.-+|++++++.+.+...+++.+. +.+.+ ..|. ...++.+-+++++|..|++.+| +. ++++|.+|+|++
T Consensus 202 a~~npnI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge----~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d~~GYi~t 274 (322)
T KOG0404|consen 202 AEKNPNIEVLYNTVAVEALGDGKLLNGLRIKNVKTGE----ETDLPVSGLFFAIGHSPATKFL--KG-QVELDEDGYIVT 274 (322)
T ss_pred HhcCCCeEEEechhhhhhccCcccccceEEEecccCc----ccccccceeEEEecCCchhhHh--cC-ceeeccCceEEe
Confidence 45567899999999988877643221 22221 1222 4579999999999999999994 55 799999999998
Q ss_pred C-CCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHH
Q psy9583 698 N-DNCETNIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEH 734 (866)
Q Consensus 698 d-~~l~Ts~~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~ 734 (866)
- ..-.||+|++||+||+.. .++.+..|...|.+||..
T Consensus 275 ~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaald 313 (322)
T KOG0404|consen 275 RPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALD 313 (322)
T ss_pred ccCcccccccceeeccccchHHHHHHHhhhccchhhhhh
Confidence 7 567899999999999985 355666666666666643
|
|
| >PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-22 Score=183.99 Aligned_cols=110 Identities=49% Similarity=0.703 Sum_probs=106.0
Q ss_pred ccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHH
Q psy9583 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAV 826 (866)
Q Consensus 747 ~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~ 826 (866)
+|+++|++|++++||+||+||++.|+++.+..+++....++.+.+++.||+||++|+++++|||+|++|+++.|+|+.++
T Consensus 1 vP~~vft~p~ia~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~ 80 (110)
T PF02852_consen 1 VPTVVFTDPEIASVGLTEEEARKQGIDYEVVTVPFKSNDRARYYPETEGFVKLIFDKKTGRILGAQIVGPNASELINELA 80 (110)
T ss_dssp CEEEEESSSEEEEEES-HHHHHHHTSGEEEEEEEEGGEHHHHHTTTTEEEEEEEEETTTTBEEEEEEEETTHHHHHHHHH
T ss_pred CCEEEECCCceEEEccCHHHHHhccCceeeeeecccccchhcccCCcceeeEEEEEeeccceeeeeeecCchHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCHHHHccccccCCChhHHHHHHH
Q psy9583 827 IAIEFRASSEDIARICHVHPSLSEAMKEAA 856 (866)
Q Consensus 827 ~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 856 (866)
++|++++|++++.+.+++|||++|++.+||
T Consensus 81 ~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 81 LAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp HHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred HHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 999999999999999999999999999886
|
; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B .... |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=220.23 Aligned_cols=305 Identities=14% Similarity=0.132 Sum_probs=187.4
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceecccc--------chhHHHhhHHHHHHhhhh
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP--------SKALLQTSHSFENVKNSF 460 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P--------~~~~~~~~~~~~~~~~~~ 460 (866)
..++|+|||||+|||+||.+|++.|++|++||+. +.+||.|.+....+ .+... ....+..+..+.
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~------~~vGG~W~~~~~~~~d~~~~~~~~~~~-~s~~Y~~L~tn~ 81 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFERE------KQVGGLWVYTPKSESDPLSLDPTRSIV-HSSVYESLRTNL 81 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecC------CCCcceeecCCCcCCCccccCCCCccc-chhhhhhhhccC
Confidence 3589999999999999999999999999999998 78999997653221 11000 011222222111
Q ss_pred hhc--C---ccccccccC---HHHHHHHHHHHHHhhhhhHHHHHHhCCcE--EEEeEEEE-eccccCcccEEEEEc--CC
Q psy9583 461 FEY--G---INTQNVTLN---LQKMLERKNNIIKKNNSGILFLFKKNKIK--FFHGHAIF-TGKIQNNFHEIQIIN--KT 527 (866)
Q Consensus 461 ~~~--g---i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--v~~g~~v~-~~~~~~~~~~v~v~~--~~ 527 (866)
... + ++......+ ....+... ..+...++.+.++.++. +.+++.+. ++. ..+.+.|.. .+
T Consensus 82 p~~~m~f~dfp~~~~~~~~~~~~~~fp~~----~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~---~~~~w~V~~~~~~ 154 (461)
T PLN02172 82 PRECMGYRDFPFVPRFDDESRDSRRYPSH----REVLAYLQDFAREFKIEEMVRFETEVVRVEP---VDGKWRVQSKNSG 154 (461)
T ss_pred CHhhccCCCCCCCcccccccCcCCCCCCH----HHHHHHHHHHHHHcCCcceEEecCEEEEEee---cCCeEEEEEEcCC
Confidence 110 1 111000000 00000011 12233456667778887 66776665 332 234455543 22
Q ss_pred c--eEEEecEEEEecC--CCCcCCCCCcC---CCceEecchhhhccc-cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEE
Q psy9583 528 K--ETITAKYIIIATG--SKARSFPGVKF---DENLILSNKGALEMI-NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTIL 599 (866)
Q Consensus 528 g--~~i~~d~lViATG--s~p~~~p~~~~---~~~~~~t~~~~~~~~-~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli 599 (866)
+ .+..||+||+||| +.|+.|+.++. .+. .+++.++.... ..+|+|+|||+|.+|+|+|..|...+.+|+++
T Consensus 155 ~~~~~~~~d~VIvAtG~~~~P~~P~ipG~~~f~G~-~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~ 233 (461)
T PLN02172 155 GFSKDEIFDAVVVCNGHYTEPNVAHIPGIKSWPGK-QIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIA 233 (461)
T ss_pred CceEEEEcCEEEEeccCCCCCcCCCCCCcccCCce-EEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEE
Confidence 2 2568999999999 56776654432 222 23333332222 25799999999999999999999999999999
Q ss_pred ecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 600 EMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 600 ~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.|+..+.. ...+......+..+..|..+..++ . +.+. +|. .+++|.||+|||++++.++
T Consensus 234 ~r~~~~~~----------~~~~~~~~~~v~~~~~I~~~~~~g-~--V~f~--DG~------~~~~D~Ii~~TGy~~~~pf 292 (461)
T PLN02172 234 SRASESDT----------YEKLPVPQNNLWMHSEIDTAHEDG-S--IVFK--NGK------VVYADTIVHCTGYKYHFPF 292 (461)
T ss_pred Eeeccccc----------cccCcCCCCceEECCcccceecCC-e--EEEC--CCC------CccCCEEEECCcCCccccc
Confidence 99764321 011112234556667776665332 2 5554 665 6789999999999999998
Q ss_pred CCccccCeeecCCCcEEeCCCC---------CCC-CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 680 LNIDKIGLKVNENNFIIVNDNC---------ETN-IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 680 l~l~~~gl~~~~~G~i~Vd~~l---------~Ts-~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
| +.. |.+.+|+.. -.. .|+++.+|=.. .......+-.|++.+|.-+.|+.
T Consensus 293 L--~~~-------~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~-~~~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 293 L--ETN-------GYMRIDENRVEPLYKHVFPPALAPGLSFIGLPA-MGIQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred c--Ccc-------cceeeCCCcchhhHHhhcCCCCCCcEEEEeccc-cccCchhHHHHHHHHHHHHcCCC
Confidence 5 332 334343321 123 48999999553 23356788899999999988763
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=201.32 Aligned_cols=289 Identities=23% Similarity=0.257 Sum_probs=198.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+|.|||+||||++||..|++.|++|+++|+. +..||... +|++....
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~------~~~GGll~--------------------------yGIP~~kl 171 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERV------ALDGGLLL--------------------------YGIPDFKL 171 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCc------CCCceeEE--------------------------ecCchhhc
Confidence 78999999999999999999999999999997 67777543 23332111
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARSFPG 549 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~~p~ 549 (866)
. ..+. +.....+++.|++++.+..+-.+. ++ + ...-.||++++|||+. |+..+.
T Consensus 172 ~---k~i~-----------d~~i~~l~~~Gv~~~~~~~vG~~i--------t~--~-~L~~e~Dav~l~~G~~~~~~l~i 226 (457)
T COG0493 172 P---KDIL-----------DRRLELLERSGVEFKLNVRVGRDI--------TL--E-ELLKEYDAVFLATGAGKPRPLDI 226 (457)
T ss_pred c---chHH-----------HHHHHHHHHcCeEEEEcceECCcC--------CH--H-HHHHhhCEEEEeccccCCCCCCC
Confidence 1 0111 112445777889998887664221 11 1 1223469999999975 544433
Q ss_pred CcCCCceEecchhhhcc---------------ccCCCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcC--CCcccH
Q psy9583 550 VKFDENLILSNKGALEM---------------INVPKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNF--LNTVDE 611 (866)
Q Consensus 550 ~~~~~~~~~t~~~~~~~---------------~~~~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~--l~~~d~ 611 (866)
.+.+...++...+++.. ...+++++|||||.++++++....+.|. +|+.+++...- ...++.
T Consensus 227 ~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~ 306 (457)
T COG0493 227 PGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPT 306 (457)
T ss_pred CCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccc
Confidence 33333344433222211 0123899999999999999999999998 57777532221 112222
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEE----EEEeeC---CC-------CccceeEEEeccEEEEeeccccC
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKE-NVL----INYSNK---ST-------NVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~----v~~~~~---~g-------~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.......+.....|+++.+.....++..+++ .+. ..+... ++ ...+....+.+|.|+.|+|+.++
T Consensus 307 ~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~ 386 (457)
T COG0493 307 WAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGD 386 (457)
T ss_pred cchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHHHHHHHhccCCC
Confidence 2345566777788999998888888887543 332 111111 11 01234678999999999999988
Q ss_pred CCCCCccccCeeecCCCcEEeCCCC-CCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q psy9583 677 TNNLNIDKIGLKVNENNFIIVNDNC-ETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 677 ~~~l~l~~~gl~~~~~G~i~Vd~~l-~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 736 (866)
.........++..+.+|.|.+|+.+ +|+.|++||.||+..+..+...|+.+||.+|+.|-
T Consensus 387 ~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 387 ATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred cccccccccccccCCCCceecccccccccCCCeeeCceeccchhhhhhHHhhchHHHHhhh
Confidence 6653233446788889999999998 99999999999999888899999999999998874
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=196.29 Aligned_cols=313 Identities=19% Similarity=0.213 Sum_probs=157.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceec-----cc---cchhHHHhhHHHHHHhhhhhh
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG-----CI---PSKALLQTSHSFENVKNSFFE 462 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g-----~~---P~~~~~~~~~~~~~~~~~~~~ 462 (866)
.+|+|||||++||++|..|.+.|++++++|+. +.+||+|.+.. +. ++-.. ..+..... +..
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~------~~iGG~W~~~~~~~~g~~~~y~sl~~-n~sk~~~~----fsd 70 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKS------DDIGGLWRYTENPEDGRSSVYDSLHT-NTSKEMMA----FSD 70 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESS------SSSSGGGCHSTTCCCSEGGGSTT-B--SS-GGGSC----CTT
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecC------CCCCccCeeCCcCCCCccccccceEE-eeCchHhc----CCC
Confidence 57999999999999999999999999999998 89999997532 11 11000 00100000 111
Q ss_pred cCccccc-cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcE--EEEeEEEE-ecccc--CcccEEEEEcC-Cc--eEEEe
Q psy9583 463 YGINTQN-VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK--FFHGHAIF-TGKIQ--NNFHEIQIINK-TK--ETITA 533 (866)
Q Consensus 463 ~gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--v~~g~~v~-~~~~~--~~~~~v~v~~~-~g--~~i~~ 533 (866)
+-++... ......++.++ ++.+.++.++. +.+++.|. +...+ .....+.|.+. ++ ++-.|
T Consensus 71 fp~p~~~p~f~~~~~v~~Y-----------l~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~f 139 (531)
T PF00743_consen 71 FPFPEDYPDFPSHSEVLEY-----------LESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEF 139 (531)
T ss_dssp S-HCCCCSSSEBHHHHHHH-----------HHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEE
T ss_pred cCCCCCCCCCCCHHHHHHH-----------HHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEe
Confidence 1111111 11223333333 44455555553 45555555 32211 11235555542 33 45679
Q ss_pred cEEEEecCCC--CcCC----CCCcCCCceEecchhhhccc-cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC
Q psy9583 534 KYIIIATGSK--ARSF----PGVKFDENLILSNKGALEMI-NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606 (866)
Q Consensus 534 d~lViATGs~--p~~~----p~~~~~~~~~~t~~~~~~~~-~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l 606 (866)
|+||+|||.. |..| ||.+...-.++++.++.+.. ..+|+|+|||+|.+|+++|..+++...+|++..|+..+.
T Consensus 140 D~VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv 219 (531)
T PF00743_consen 140 DAVVVATGHFSKPNIPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWV 219 (531)
T ss_dssp CEEEEEE-SSSCESB-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-----
T ss_pred CeEEEcCCCcCCCCCChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccc
Confidence 9999999953 5543 34322223466666665544 358999999999999999999999999999988876542
Q ss_pred -Ccc-------cHH----------------HHHHHH-HHHHH------cCCEEE------------------------eC
Q psy9583 607 -NTV-------DEE----------------IAKKAF-HLLNK------QGLNII------------------------LN 631 (866)
Q Consensus 607 -~~~-------d~~----------------~~~~l~-~~l~~------~GV~i~------------------------~~ 631 (866)
+.+ |.- +...+. +.+.+ .|..-. ..
T Consensus 220 ~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk 299 (531)
T PF00743_consen 220 LPRYWDNGYPFDMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK 299 (531)
T ss_dssp -------------------------------------------------------------------------------E
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 211 100 111110 11100 011000 00
Q ss_pred ceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC---CCCCCCE
Q psy9583 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC---ETNIPNI 708 (866)
Q Consensus 632 ~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l---~Ts~~~V 708 (866)
..|.++. ++ .+.+. ||. ...++|.||+|||++...++| ++.-+... ++.+..-.++ .-..|++
T Consensus 300 ~~I~~~~--~~--~v~F~--DGs-----~~e~vD~II~~TGY~~~fpFL--~~~~~~~~-~~~~~LYk~vfp~~~~~ptL 365 (531)
T PF00743_consen 300 PDIKRFT--EN--SVIFE--DGS-----TEEDVDVIIFCTGYKFSFPFL--DESLIKVD-DNRVRLYKHVFPPNLDHPTL 365 (531)
T ss_dssp E-EEEE---SS--EEEET--TSE-----EEEE-SEEEE---EE---TTB---TTTT-S--SSSSSEETTTEETETTSTTE
T ss_pred ccccccc--cc--ccccc--ccc-----ccccccccccccccccccccc--cccccccc-cccccccccccccccccccc
Confidence 0111111 11 12232 443 235799999999999999885 33333333 2223222222 1245899
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 709 YAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 709 yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
..+|=+.........+-.|++.+|+-+.|..
T Consensus 366 afIG~~~~~g~~fp~~ElQArw~a~v~sG~~ 396 (531)
T PF00743_consen 366 AFIGLVQPFGSIFPIFELQARWAARVFSGRV 396 (531)
T ss_dssp EESS-SBSSS-HHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999765322356779999999999998864
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-17 Score=193.73 Aligned_cols=288 Identities=17% Similarity=0.185 Sum_probs=167.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHH-hhHHHHHH---hhhhhhcCc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ-TSHSFENV---KNSFFEYGI 465 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~-~~~~~~~~---~~~~~~~gi 465 (866)
.++|+||||||||++||.+|++.|++|+++|+. ...|+..... -|-+.+.. .....+.. ...+..+|+
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~------~i~gl~~~~~--~~i~~~~~~~~~L~er~p~~~GG~~~yGI 454 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL------KITLLPFDVH--KPIKFWHEYKNLLSERMPRGFGGVAEYGI 454 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc------cccccccccc--cccchhhhhccchhhhccccCCcccccCc
Confidence 579999999999999999999999999999986 3333321100 01000000 00011111 001233333
Q ss_pred cccccccCHHHHHHHHHHHHHhhhhhHHHHHHh-CCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCC-C
Q psy9583 466 NTQNVTLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGS-K 543 (866)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs-~ 543 (866)
+ +.|.+-. .+ .+...++. .++.++.|.....+. ++ ++-....||+|+||||+ .
T Consensus 455 p-----~R~~k~~------l~----~i~~il~~g~~v~~~~gv~lG~di--------t~--edl~~~gyDAV~IATGA~k 509 (1028)
T PRK06567 455 T-----VRWDKNN------LD----ILRLILERNNNFKYYDGVALDFNI--------TK--EQAFDLGFDHIAFCIGAGQ 509 (1028)
T ss_pred c-----ccchHHH------HH----HHHHHHhcCCceEEECCeEECccC--------CH--HHHhhcCCCEEEEeCCCCC
Confidence 3 2222211 11 01112222 245555565432211 11 11134679999999999 6
Q ss_pred CcCCCCCcCCCceEecchhhhccc--------------cCCCeEEEECCcHHHHHHHHHHHh------------------
Q psy9583 544 ARSFPGVKFDENLILSNKGALEMI--------------NVPKKLCIIGAGVIGLEIGSIWRR------------------ 591 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t~~~~~~~~--------------~~~~~vvVIGgG~~glE~A~~l~~------------------ 591 (866)
|+.++.++.+...+++..+++... ..+++|+|||||.+|+|+|....+
T Consensus 510 pr~L~IPGeda~GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~ 589 (1028)
T PRK06567 510 PKVLDIENFEAKGVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDL 589 (1028)
T ss_pred CCCCCCCCccCCCeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhc
Confidence 887776666667788776654331 135799999999999999983322
Q ss_pred ---------------------------------cCCcEEEEecCCcCC-CcccHHHHHHHHHHHHHcCCEEEeCceEEEE
Q psy9583 592 ---------------------------------LGSEVTILEMSSNFL-NTVDEEIAKKAFHLLNKQGLNIILNTKIHDI 637 (866)
Q Consensus 592 ---------------------------------~g~~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i 637 (866)
.|. |++++|+..-- +... ...+.+.+ ..+.||+|+.+..+.++
T Consensus 590 ~~~d~eia~~f~~h~r~~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~~-~~~eEv~~-A~eEGV~f~~~~~P~~i 666 (1028)
T PRK06567 590 TEEDKEIAEEFIAHAKLFKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAYK-LNHEELIY-ALALGVDFKENMQPLRI 666 (1028)
T ss_pred ccccHHHHHHHHHHHHhhcchhccchhhhhhccCCc-eEEEecCChhhCCCCC-CCHHHHHH-HHHcCcEEEecCCcEEE
Confidence 222 88888876432 3220 00122333 34469999999999999
Q ss_pred EEcC-CeEE-EEEeeC-------CCC---------------ccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCC
Q psy9583 638 KINK-ENVL-INYSNK-------STN---------------VKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENN 693 (866)
Q Consensus 638 ~~~~-~~~~-v~~~~~-------~g~---------------~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G 693 (866)
..++ +.+. +.+... .|. ......+++||.||+|+|..||+.+. . +
T Consensus 667 ~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~---------~-~- 735 (1028)
T PRK06567 667 NVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD---------E-D- 735 (1028)
T ss_pred EecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc---------c-c-
Confidence 7654 3322 222210 111 01134689999999999999999872 0 0
Q ss_pred cEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q psy9583 694 FIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 694 ~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 736 (866)
+..+-++.+++|+- ....|+.+|+.++.+|.
T Consensus 736 ----~~s~~~d~~~~f~G--------tvv~A~as~k~~~~~i~ 766 (1028)
T PRK06567 736 ----KYSYFGDCNPKYSG--------SVVKALASSKEGYDAIN 766 (1028)
T ss_pred ----ccccccCCCCcccc--------HHHHHHHHHHhHHHHHH
Confidence 11222344556654 67889999999999993
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-18 Score=174.93 Aligned_cols=190 Identities=29% Similarity=0.431 Sum_probs=120.3
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVT 471 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 471 (866)
||+|||||+||++||.+|++.+.+++|||+.+ +.|....|++...+............ ...+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------- 62 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP---------GTPYNSGCIPSPLLVEIAPHRHEFLP-ARLF-------- 62 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS---------HHHHHHSHHHHHHHHHHHHHHHHHHH-HHHG--------
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc---------cccccccccccccccccccccccccc-cccc--------
Confidence 79999999999999999999999999998751 12222334443333222221111100 0000
Q ss_pred cCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEE-EEeccccCc----ccEEEE-EcCCceEEEecEEEEecCCCCc
Q psy9583 472 LNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA-IFTGKIQNN----FHEIQI-INKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~-v~~~~~~~~----~~~v~v-~~~~g~~i~~d~lViATGs~p~ 545 (866)
.+...++..++++..+.. ..++..... ...+.. ...++..+.||+||+|||+.|.
T Consensus 63 -------------------~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~ 123 (201)
T PF07992_consen 63 -------------------KLVDQLKNRGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPR 123 (201)
T ss_dssp -------------------HHHHHHHHHTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEE
T ss_pred -------------------ccccccccceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccc
Confidence 112223456777744333 223321110 011222 3345688999999999999987
Q ss_pred CCCCCcC----CCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHH
Q psy9583 546 SFPGVKF----DENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621 (866)
Q Consensus 546 ~~p~~~~----~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l 621 (866)
.++.++. ....+.+...+......+++++|||
T Consensus 124 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG-------------------------------------------- 159 (201)
T PF07992_consen 124 TPNIPGEEVAYFLRGVDDAQRFLELLESPKRVAVVG-------------------------------------------- 159 (201)
T ss_dssp EESSTTTTTECBTTSEEHHHHHHTHSSTTSEEEEES--------------------------------------------
T ss_pred eeecCCCccccccccccccccccccccccccccccc--------------------------------------------
Confidence 5533332 1244667777777767778999999
Q ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC
Q psy9583 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 622 ~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l 701 (866)
.+.|. +..+++++++|++.||+++
T Consensus 160 -------------------------------------------------------~~~l~-~~~~~~~~~~g~i~vd~~~ 183 (201)
T PF07992_consen 160 -------------------------------------------------------TEFLA-EKLGVELDENGFIKVDENL 183 (201)
T ss_dssp -------------------------------------------------------TTTST-HHTTSTBTTTSSBEEBTTS
T ss_pred -------------------------------------------------------ccccc-ccccccccccccccccccc
Confidence 33432 6778899889999999999
Q ss_pred CCCCCCEEEecccCCCC
Q psy9583 702 ETNIPNIYAIGDVVRGP 718 (866)
Q Consensus 702 ~Ts~~~VyA~GD~a~~~ 718 (866)
||++|||||+|||++.+
T Consensus 184 ~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 184 QTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp BBSSTTEEE-GGGBEES
T ss_pred ccccccccccccccccC
Confidence 99999999999999643
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-17 Score=138.52 Aligned_cols=74 Identities=39% Similarity=0.679 Sum_probs=72.2
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEE
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~ 77 (866)
.+|++|.+|..+++++|.+|++++||.|++||+||+|||||+.++|+||.+|+|.++++++|+.|++|++|+.|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDTVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEEEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999986
|
Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A .... |
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-17 Score=184.96 Aligned_cols=280 Identities=21% Similarity=0.280 Sum_probs=176.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
-++|.|||+|||||+||-.|-+.|+.|+++||. ++.||.. .||++.-
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~------dr~ggll--------------------------~ygipnm- 1831 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERS------DRVGGLL--------------------------MYGIPNM- 1831 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEec------CCcCcee--------------------------eecCCcc-
Confidence 478999999999999999999999999999998 7888854 3344321
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~~p 548 (866)
..|-. ..++ -..++.+.||+++.++..-. .+.+ ++..-.+|.+|+|+||. |+.+|
T Consensus 1832 -kldk~-vv~r-----------rv~ll~~egi~f~tn~eigk--------~vs~---d~l~~~~daiv~a~gst~prdlp 1887 (2142)
T KOG0399|consen 1832 -KLDKF-VVQR-----------RVDLLEQEGIRFVTNTEIGK--------HVSL---DELKKENDAIVLATGSTTPRDLP 1887 (2142)
T ss_pred -chhHH-HHHH-----------HHHHHHhhCceEEeeccccc--------cccH---HHHhhccCeEEEEeCCCCCcCCC
Confidence 11111 1111 13467788999998775432 1222 33455799999999986 77666
Q ss_pred CCcCCCceEecch---------------hhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEE-EEecCCc--------
Q psy9583 549 GVKFDENLILSNK---------------GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVT-ILEMSSN-------- 604 (866)
Q Consensus 549 ~~~~~~~~~~t~~---------------~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vt-li~~~~~-------- 604 (866)
.++.+...+.-.. +...+...+|+|+|||||.+|-++...-.++|++-. -++--+.
T Consensus 1888 v~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~ 1967 (2142)
T KOG0399|consen 1888 VPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPD 1967 (2142)
T ss_pred CCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCC
Confidence 6554333222111 122223457999999999999999888888887632 2221111
Q ss_pred -CCCccc----HHHH-HHHHHHHHHcCCEEEe------------CceEE-------EEEEcCCeEEEEEeeCCCCcccee
Q psy9583 605 -FLNTVD----EEIA-KKAFHLLNKQGLNIIL------------NTKIH-------DIKINKENVLINYSNKSTNVKTEI 659 (866)
Q Consensus 605 -~l~~~d----~~~~-~~l~~~l~~~GV~i~~------------~~~v~-------~i~~~~~~~~v~~~~~~g~~~~~~ 659 (866)
..|.++ -+.. ..+.+ ..|-..++ +..|+ +++.++.+.+...+- .+ ..
T Consensus 1968 npwpqwprvfrvdygh~e~~~---~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei-~~----se 2039 (2142)
T KOG0399|consen 1968 NPWPQWPRVFRVDYGHAEAKE---HYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEI-NN----SE 2039 (2142)
T ss_pred CCCccCceEEEeecchHHHHH---HhCCCcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEc-CC----cc
Confidence 112111 0111 11111 11221111 11111 122232222211111 11 13
Q ss_pred EEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEe-CCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHH
Q psy9583 660 ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIV-NDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735 (866)
Q Consensus 660 ~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~V-d~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i 735 (866)
+.++||+|++|.|+...-... .++.+++.|+++.|.. ++.+.|++++|||+|||-.+..+...|+.+||-+|+.+
T Consensus 2040 e~~eadlv~lamgf~gpe~~~-~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399|consen 2040 EIIEADLVILAMGFVGPEKSV-IEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred eeeecceeeeeccccCcchhh-hhhcCcccCccccccCCCccccccccceeecccccCCceEEEEEehhhhHHHHHH
Confidence 579999999999986433332 6788899998887775 45688999999999999988888899999999999876
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-17 Score=166.82 Aligned_cols=192 Identities=16% Similarity=0.190 Sum_probs=106.0
Q ss_pred eeecCCccHHHHHHHHHHCCCe-EEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccccc
Q psy9583 394 IVIGAGPGGYVASIRLAQLGFK-TACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTL 472 (866)
Q Consensus 394 vIIGgG~AGl~aA~~L~~~g~~-V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~ 472 (866)
+||||||+|+++|.+|.+.|.+ ++|||++ +.+||.|......+.. .....+ ...++++. ...+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~------~~~Gg~w~~~~~~~~~---~~~~~~------~~~~~~~~-~~~~ 64 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN------DRPGGVWRRYYSYTRL---HSPSFF------SSDFGLPD-FESF 64 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESS------SSSTTHHHCH-TTTT----BSSSCC------TGGSS--C-CCHS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCC------CCCCCeeEEeCCCCcc---ccCccc------cccccCCc-cccc
Confidence 6999999999999999999999 9999998 7899998643211100 000000 00000000 0000
Q ss_pred CHHHHHHHH----HHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCC--CCc
Q psy9583 473 NLQKMLERK----NNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGS--KAR 545 (866)
Q Consensus 473 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs--~p~ 545 (866)
.+....... ....+.+.+.++.+.++.++++..++.+. +.. ....+.|+..+++++.+|+||+|||. .|.
T Consensus 65 ~~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~---~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~ 141 (203)
T PF13738_consen 65 SFDDSPEWRWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRR---DGDGWTVTTRDGRTIRADRVVLATGHYSHPR 141 (203)
T ss_dssp CHHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEE---ETTTEEEEETTS-EEEEEEEEE---SSCSB-
T ss_pred ccccCCCCCCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEE---eccEEEEEEEecceeeeeeEEEeeeccCCCC
Confidence 011000000 00011223345667788888887777666 332 22336666666778999999999996 566
Q ss_pred CCCCCc-CCCceEecchhhhccc-cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 546 SFPGVK-FDENLILSNKGALEMI-NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 546 ~~p~~~-~~~~~~~t~~~~~~~~-~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
.|+..+ ... ..+++.++.+.. ..+++|+|||+|.+|++++..|.+.|.+|+++.|++.+
T Consensus 142 ~p~~~g~~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~~ 202 (203)
T PF13738_consen 142 IPDIPGSAFR-PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPIW 202 (203)
T ss_dssp --S-TTGGCS-EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS---
T ss_pred cccccccccc-ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCCC
Confidence 554443 223 455555554433 35799999999999999999999999999999998753
|
... |
| >KOG2755|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-16 Score=153.74 Aligned_cols=264 Identities=19% Similarity=0.217 Sum_probs=160.3
Q ss_pred eeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 393 VIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 393 VvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+|||||.||.+||..|+.+ ..+++|+... + +......+..+..++++|.+....
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitas------s----------------~vksvtn~~~i~~ylekfdv~eq~- 58 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITAS------S----------------FVKSVTNYQKIGQYLEKFDVKEQN- 58 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEecc------H----------------HHHHHhhHHHHHHHHHhcCccccc-
Confidence 68999999999999999987 4679999764 1 222333444454545666554321
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGV 550 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~~ 550 (866)
-..+....+.+++ + .+. .+...+. +++.+|..+.|++|++|||++|...-..
T Consensus 59 ---~~elg~~f~~~~~-----------~---------v~~---~~s~ehc--i~t~~g~~~ky~kKOG~tg~kPklq~E~ 110 (334)
T KOG2755|consen 59 ---CHELGPDFRRFLN-----------D---------VVT---WDSSEHC--IHTQNGEKLKYFKLCLCTGYKPKLQVEG 110 (334)
T ss_pred ---hhhhcccHHHHHH-----------h---------hhh---hccccce--EEecCCceeeEEEEEEecCCCcceeecC
Confidence 1111111111111 1 011 1112233 3446788999999999999999754221
Q ss_pred cCCCceEe---c--chhhhc-cccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHHHHHHH
Q psy9583 551 KFDENLIL---S--NKGALE-MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNK 623 (866)
Q Consensus 551 ~~~~~~~~---t--~~~~~~-~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~ 623 (866)
-...++ + +.+.+. .....|.|.|+|.|-+++|++..+. +.+|+|....+.+.. .+||.+.+.+...|..
T Consensus 111 --~n~~Iv~irDtDsaQllq~kl~kaK~VlilgnGgia~El~yElk--~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a 186 (334)
T KOG2755|consen 111 --INPKIVGIRDTDSAQLLQCKLVKAKIVLILGNGGIAMELTYELK--ILNVTWKIKDEGISATFFDPGAAEFYDINLRA 186 (334)
T ss_pred --CCceEEEEecCcHHHHHHHHHhhcceEEEEecCchhHHHHHHhh--cceeEEEecchhhhhcccCccHHHHhHhhhhc
Confidence 122232 2 222221 2245899999999999999988776 568999988888875 4577777777665521
Q ss_pred cC------------CEEEeCc-----------------------------------eEEEEEEcCCeEEEEEeeCCCCcc
Q psy9583 624 QG------------LNIILNT-----------------------------------KIHDIKINKENVLINYSNKSTNVK 656 (866)
Q Consensus 624 ~G------------V~i~~~~-----------------------------------~v~~i~~~~~~~~v~~~~~~g~~~ 656 (866)
.+ ++...++ .+..+....+...+... ....
T Consensus 187 ~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~---~~ek 263 (334)
T KOG2755|consen 187 DRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYM---DKEK 263 (334)
T ss_pred ccccchhhhhhhhhhhhcCcccccCcccccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccc---cccc
Confidence 11 1000000 00000000000011110 0011
Q ss_pred ceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCC
Q psy9583 657 TEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVR 716 (866)
Q Consensus 657 ~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~ 716 (866)
+....+.+|.++.|+|..||.++ .-...+...++|.+.||+.|+|+.|++||+||++.
T Consensus 264 ~~~~qlt~d~ivSatgvtpn~e~--~~~~~lq~~edggikvdd~m~tslpdvFa~gDvct 321 (334)
T KOG2755|consen 264 MADNQLTCDFIVSATGVTPNSEW--AMNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCT 321 (334)
T ss_pred cccceeeeeEEEeccccCcCceE--EecChhhhccccCeeehhhccccccceeeecceec
Confidence 12346789999999999999996 34445677778899999999999999999999985
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-15 Score=157.15 Aligned_cols=331 Identities=15% Similarity=0.192 Sum_probs=200.1
Q ss_pred cccccceeeecCCccHHHHHHHHHHCC-CeEEEEeccCCCcccccCC----Cccceec--------cccchhHHHhhHHH
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLG-FKTACIDEWKDNEENFALG----GTCTNVG--------CIPSKALLQTSHSF 453 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~~~~~~~~~G----G~~~~~g--------~~P~~~~~~~~~~~ 453 (866)
|++.+|++.||-||+-|+.|..|.+.+ .++..+||. |.++++.| |+.+..- ..|...+.+...
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerk--p~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNY-- 77 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERK--PDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNY-- 77 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecC--CCCCcCCCcccCCccccccchhhhccccCCCCchHHHHH--
Confidence 556799999999999999999999885 889999997 44555554 2211111 012211111110
Q ss_pred HHHhhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcc-cEEEEEcCCceEE
Q psy9583 454 ENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNF-HEIQIINKTKETI 531 (866)
Q Consensus 454 ~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~-~~v~v~~~~g~~i 531 (866)
+.+.+--. ..+.+..+...+.++ . .+..|....--.+.+++.+. +..++.+. ....+.+.++..+
T Consensus 78 ------L~~h~RLy--~Fl~~e~f~i~R~Ey----~-dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y 144 (436)
T COG3486 78 ------LHEHGRLY--EFLNYETFHIPRREY----N-DYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVY 144 (436)
T ss_pred ------HHHcchHh--hhhhhhcccccHHHH----H-HHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEE
Confidence 11111000 000111111111111 1 12222322224455666555 22222222 2233455566789
Q ss_pred EecEEEEecCCCCcCCCCC-cCCCceEecchhhhcccc---CCCeEEEECCcHHHHHHHHHHHhc----CCcEEEEecCC
Q psy9583 532 TAKYIIIATGSKARSFPGV-KFDENLILSNKGALEMIN---VPKKLCIIGAGVIGLEIGSIWRRL----GSEVTILEMSS 603 (866)
Q Consensus 532 ~~d~lViATGs~p~~~p~~-~~~~~~~~t~~~~~~~~~---~~~~vvVIGgG~~glE~A~~l~~~----g~~Vtli~~~~ 603 (866)
.++.||+++|.+|+.||.. +..+..++++.++.+... ..++|+|||+|.+|.|+-..|... ..++.|+.|+.
T Consensus 145 ~ar~lVlg~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~ 224 (436)
T COG3486 145 RARNLVLGVGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSS 224 (436)
T ss_pred EeeeEEEccCCCcCCChHHhCcCccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccC
Confidence 9999999999999988755 344556777666654432 234599999999999998777653 34588999998
Q ss_pred cCCCc---------ccHHHHHHH------------------------------HHHHH-------HcCCEEEeCceEEEE
Q psy9583 604 NFLNT---------VDEEIAKKA------------------------------FHLLN-------KQGLNIILNTKIHDI 637 (866)
Q Consensus 604 ~~l~~---------~d~~~~~~l------------------------------~~~l~-------~~GV~i~~~~~v~~i 637 (866)
.+++. |.|+..+++ .+.|- +..+.++.++.+..+
T Consensus 225 gf~p~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~ 304 (436)
T COG3486 225 GFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSV 304 (436)
T ss_pred CCCccccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeee
Confidence 87652 233332222 11111 235788899999999
Q ss_pred EEcCCe-EEEEEeeC-CCCccceeEEEeccEEEEeeccccCCC-CCCccccCeeecCCCcEEeCCCCCCC-----CCCEE
Q psy9583 638 KINKEN-VLINYSNK-STNVKTEIITSIFDKLLIAIGRIPNTN-NLNIDKIGLKVNENNFIIVNDNCETN-----IPNIY 709 (866)
Q Consensus 638 ~~~~~~-~~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~-~l~l~~~gl~~~~~G~i~Vd~~l~Ts-----~~~Vy 709 (866)
+..+++ +.+.+... .++ ..+++.|.||+|||++...+ +|..-.-.+.++++|...|++.++.. .-.||
T Consensus 305 ~~~G~g~~~l~~~~~~~~~----~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~if 380 (436)
T COG3486 305 EPAGDGRYRLTLRHHETGE----LETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIF 380 (436)
T ss_pred ecCCCceEEEEEeeccCCC----ceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEE
Confidence 988866 66666542 233 56889999999999996555 43211123677889999999877542 23699
Q ss_pred EecccCC-----CCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 710 AIGDVVR-----GPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 710 A~GD~a~-----~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
+.|-+.. .|.+.-.|++.+.++ +.++|..
T Consensus 381 vqn~e~htHGig~pdLsl~a~Raa~I~-~~L~g~~ 414 (436)
T COG3486 381 VQNAELHTHGIGAPDLSLGAWRAAVIL-NSLLGRE 414 (436)
T ss_pred EecccccccccCCccchHHHHHHHHHH-HHHhCcC
Confidence 9998764 356677777776654 5566653
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-16 Score=170.35 Aligned_cols=262 Identities=18% Similarity=0.245 Sum_probs=141.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCC-CeEEEEeccCCCcccccCC----CccceeccccchhHHHhhHHHHHHhhhhhhcC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG-FKTACIDEWKDNEENFALG----GTCTNVGCIPSKALLQTSHSFENVKNSFFEYG 464 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~~~~~~~~~G----G~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~g 464 (866)
.||+++||.||++|+.|..|.+.+ .++..+|+.+ ...+..| |+-.....+.. +..+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~--~f~Wh~gmll~~~~~q~~fl~D----------------lvt~~ 63 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP--SFSWHPGMLLPGARMQVSFLKD----------------LVTLR 63 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S--S--TTGGG--SS-B-SS-TTSS----------------SSTTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC--CCCcCCccCCCCCccccccccc----------------cCcCc
Confidence 489999999999999999999886 8999999873 2222222 21111110000 00000
Q ss_pred ccccccccCHHHHHHHHHHH------------HHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCc-ccEEEEEc----C
Q psy9583 465 INTQNVTLNLQKMLERKNNI------------IKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNN-FHEIQIIN----K 526 (866)
Q Consensus 465 i~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~-~~~v~v~~----~ 526 (866)
-+ ...+.|-.++....+. ...+.+.+.+..++..-.+.++..|. +...... ...+.|.+ .
T Consensus 64 ~P--~s~~sflnYL~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g 141 (341)
T PF13434_consen 64 DP--TSPFSFLNYLHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDG 141 (341)
T ss_dssp -T--TSTTSHHHHHHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS
T ss_pred CC--CCcccHHHHHHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCC
Confidence 00 0111222111111111 11222334444555565477777766 4332111 13466654 2
Q ss_pred CceEEEecEEEEecCCCCcCCCCCc-CC-CceEecchhhhccc---cCCCeEEEECCcHHHHHHHHHHHhcCC--cEEEE
Q psy9583 527 TKETITAKYIIIATGSKARSFPGVK-FD-ENLILSNKGALEMI---NVPKKLCIIGAGVIGLEIGSIWRRLGS--EVTIL 599 (866)
Q Consensus 527 ~g~~i~~d~lViATGs~p~~~p~~~-~~-~~~~~t~~~~~~~~---~~~~~vvVIGgG~~glE~A~~l~~~g~--~Vtli 599 (866)
++..+.+++||+|||..|..|+... .. ...++++.++.... ...++|+|||||.+|.|++..|.+.+. +|+++
T Consensus 142 ~~~~~~ar~vVla~G~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i 221 (341)
T PF13434_consen 142 DGETYRARNVVLATGGQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWI 221 (341)
T ss_dssp -EEEEEESEEEE----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEE
T ss_pred CeeEEEeCeEEECcCCCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEE
Confidence 3478999999999999998876554 22 35677666655443 467899999999999999999998875 89999
Q ss_pred ecCCcCCCc---------ccHH-------------------------------HHHHHHHHH------HHcCCEEEeCce
Q psy9583 600 EMSSNFLNT---------VDEE-------------------------------IAKKAFHLL------NKQGLNIILNTK 633 (866)
Q Consensus 600 ~~~~~~l~~---------~d~~-------------------------------~~~~l~~~l------~~~GV~i~~~~~ 633 (866)
.|++.+.+. ++|+ +.+.+.+.+ .+..+.++.++.
T Consensus 222 ~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~ 301 (341)
T PF13434_consen 222 SRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTE 301 (341)
T ss_dssp ESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEE
T ss_pred ECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCE
Confidence 998876432 2232 222222222 123478999999
Q ss_pred EEEEEEcC-CeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 634 IHDIKINK-ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 634 v~~i~~~~-~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
|+.++..+ +++.+.+.+... ++..++++|.||+|||++
T Consensus 302 v~~~~~~~~~~~~l~~~~~~~---~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 302 VTSAEQDGDGGVRLTLRHRQT---GEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEEEES-SSEEEEEEETTT-----EEEEEESEEEE---EE
T ss_pred EEEEEECCCCEEEEEEEECCC---CCeEEEecCEEEEcCCcc
Confidence 99999888 488888875221 235689999999999985
|
|
| >PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-16 Score=178.87 Aligned_cols=120 Identities=21% Similarity=0.451 Sum_probs=102.2
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
..+|+||++|++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++.+++|+.|++|++|+.++....
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~v~~g~~l~~i~~~~~ 81 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGETLPVGALLAVVADAEV 81 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCEeCCCCEEEEEecCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999975432
Q ss_pred cccccccccccccccccccccchhHHHhhhhCCCCcccccCCCCCCCceeehhH
Q psy9583 83 KLSSKTEIKNKKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDV 136 (866)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv 136 (866)
.. +.....++|.+++++++ ++++... .+++..+++...++
T Consensus 82 ~~------------~~~~~~~~p~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~i 121 (371)
T PRK14875 82 SD------------AEIDAFIAPFARRFAPE-GIDEEDA-GPAPRKARIGGRTV 121 (371)
T ss_pred Cc------------ccccccccchhhhcccc-ccchhhc-cCCCCcceEcCcEE
Confidence 10 11123578999999888 8998888 67777666544443
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=167.63 Aligned_cols=158 Identities=16% Similarity=0.208 Sum_probs=122.1
Q ss_pred EEEECCcHHHHHHH-HHHH----hcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEE
Q psy9583 573 LCIIGAGVIGLEIG-SIWR----RLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLIN 647 (866)
Q Consensus 573 vvVIGgG~~glE~A-~~l~----~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~ 647 (866)
=+|++.+.+|+|++ ..+. ++|++|+++.+.+..++.+ ++.+.+.+.+++.|+++++++.|.+++.+++++...
T Consensus 218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~--rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v 295 (422)
T PRK05329 218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGL--RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAV 295 (422)
T ss_pred CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchH--HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEE
Confidence 36889999999998 7775 4699999999999988865 688889999999999999999999998776665544
Q ss_pred EeeCCCCccceeEEEeccEEEEeeccccCCCCC---------------------------------CccccCeeecCCCc
Q psy9583 648 YSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL---------------------------------NIDKIGLKVNENNF 694 (866)
Q Consensus 648 ~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l---------------------------------~l~~~gl~~~~~G~ 694 (866)
.. .++. ...+.+|.||+|+|+.+...+. ++...|+.+|++ .
T Consensus 296 ~~-~~g~----~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~-~ 369 (422)
T PRK05329 296 WT-RNHG----DIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDAT-L 369 (422)
T ss_pred Ee-eCCc----eEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCC-c
Confidence 43 2333 3478999999999987665431 123445555533 3
Q ss_pred EEeCCCCCCCCCCEEEecccCCCCCcH------HHHHHHHHHHHHHHhCC
Q psy9583 695 IIVNDNCETNIPNIYAIGDVVRGPMLA------HKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 695 i~Vd~~l~Ts~~~VyA~GD~a~~~~~~------~~A~~~g~~aa~~i~g~ 738 (866)
..+|...++..+||||+|++.+++..+ -.|+..|..||++|+..
T Consensus 370 ~p~~~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~ 419 (422)
T PRK05329 370 RPLDSQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEE 419 (422)
T ss_pred CcccCCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHh
Confidence 455666667799999999999988655 47899999999998743
|
|
| >PRK06748 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-16 Score=127.58 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=61.6
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEe-cceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIET-DKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~-~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
.|+|.+|++++||.|++||+|++||| ||++.+|+||.+|+|.++++++|+.|++|++|+.++.+
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~V~vG~~la~I~~~ 76 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQAIADQKLLITVRDD 76 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCEECCCCEEEEEECC
Confidence 49999999999999999999999999 99999999999999999999999999999999999743
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.3e-16 Score=173.36 Aligned_cols=194 Identities=20% Similarity=0.235 Sum_probs=119.0
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCe-EEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFK-TACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~-V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
..++||+|||||++|+++|.+|++.|.. ++|+||+ ...||+|.+. +.|+..+....... . +..+-.+
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~------~~~Gg~W~~~-ry~~l~~~~p~~~~-~----~~~~p~~ 73 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKR------DDVGGTWRYN-RYPGLRLDSPKWLL-G----FPFLPFR 73 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEcc------CCcCCcchhc-cCCceEECCchhee-c----cCCCccC
Confidence 3469999999999999999999999988 9999998 7899997442 22211111111110 0 0000000
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcE----EEEeEEEEeccccCcccEEEEEcCCceE--EEecEEEEec
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK----FFHGHAIFTGKIQNNFHEIQIINKTKET--ITAKYIIIAT 540 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~----v~~g~~v~~~~~~~~~~~v~v~~~~g~~--i~~d~lViAT 540 (866)
.......+.... +.+...++++++. +.....+. + .+.+...++|..+++.. +.+|.||+||
T Consensus 74 ~~~~~~~~~~~~-----------~y~~~~~~~y~~~~~i~~~~~v~~~-~-~~~~~~~w~V~~~~~~~~~~~a~~vV~AT 140 (443)
T COG2072 74 WDEAFAPFAEIK-----------DYIKDYLEKYGLRFQIRFNTRVEVA-D-WDEDTKRWTVTTSDGGTGELTADFVVVAT 140 (443)
T ss_pred CcccCCCcccHH-----------HHHHHHHHHcCceeEEEcccceEEE-E-ecCCCCeEEEEEcCCCeeeEecCEEEEee
Confidence 000111111111 1233445555443 33333332 1 23344566666555533 6799999999
Q ss_pred CC--CCcCCCCCcCC--CceEecchhhhc-cccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC
Q psy9583 541 GS--KARSFPGVKFD--ENLILSNKGALE-MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606 (866)
Q Consensus 541 Gs--~p~~~p~~~~~--~~~~~t~~~~~~-~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l 606 (866)
|. .|+.|+..+.+ ....+++.+..+ ..-.+|+|+|||+|.+|++++..|.+.|.+|+++.|.+...
T Consensus 141 G~~~~P~iP~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~ 211 (443)
T COG2072 141 GHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI 211 (443)
T ss_pred cCCCCCCCCCCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence 95 46666544422 223444444443 34468999999999999999999999999999999988664
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-14 Score=157.12 Aligned_cols=304 Identities=17% Similarity=0.191 Sum_probs=165.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhh--cCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFE--YGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~--~gi~~ 467 (866)
..+|+|||||+|||.+|+.|.+.|++++++||. +.+||.|.+..... ...+..++.+..++.. ++.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~------~~iGGlW~y~~~~~----~~~ss~Y~~l~tn~pKe~~~~~d 75 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERT------DDIGGLWKYTENVE----VVHSSVYKSLRTNLPKEMMGYSD 75 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceEEEec------CCccceEeecCccc----ccccchhhhhhccCChhhhcCCC
Confidence 489999999999999999999999999999998 79999997762211 0001112222111111 11111
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcE--EEEeEEEE-eccccCcccEEEEEcCCc--eEEEecEEEEecCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK--FFHGHAIF-TGKIQNNFHEIQIINKTK--ETITAKYIIIATGS 542 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--v~~g~~v~-~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs 542 (866)
.....+....+...+++. ..+..++++.++. +.+++.+. ++..+++.+.+......+ ...-||.|++|||-
T Consensus 76 fpf~~~~~~~~p~~~e~~----~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh 151 (448)
T KOG1399|consen 76 FPFPERDPRYFPSHREVL----EYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGH 151 (448)
T ss_pred CCCcccCcccCCCHHHHH----HHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccC
Confidence 111111111111112222 2345556666653 33333332 333222234444443332 57889999999997
Q ss_pred C--CcCCCCCc----CCCceEecchhhhccc-cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHH
Q psy9583 543 K--ARSFPGVK----FDENLILSNKGALEMI-NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK 615 (866)
Q Consensus 543 ~--p~~~p~~~----~~~~~~~t~~~~~~~~-~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~ 615 (866)
. |+.|...+ .-.-.++++.+..... ..+|+|+|||.|.+|+|++..+++...+|++..+ ........
T Consensus 152 ~~~P~~P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~~~~~~~~----- 225 (448)
T KOG1399|consen 152 YVEPRIPQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-SPKVHVEP----- 225 (448)
T ss_pred cCCCCCCcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-cccccccc-----
Confidence 7 65443222 2222455665555433 3579999999999999999999999999888765 20000000
Q ss_pred HHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcE
Q psy9583 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI 695 (866)
Q Consensus 616 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 695 (866)
...+ -.++..+. . +..+..++ ..+. .++. ...+|.+|+|||+.-...++ +..+ .+
T Consensus 226 --~~~~-~~~~~~~~-~-i~~~~e~~----~~~~-~~~~------~~~~D~ii~ctgy~y~fPfl--~~~~-------~~ 280 (448)
T KOG1399|consen 226 --PEIL-GENLWQVP-S-IKSFTEDG----SVFE-KGGP------VERVDRIIFCTGYKYKFPFL--ETLG-------LG 280 (448)
T ss_pred --ccee-ecceEEcc-c-cccccCcc----eEEE-cCce------eEEeeeEEEeeeeEeeccee--ccCC-------ce
Confidence 0000 01222221 1 44443322 1222 1443 78899999999998877774 3321 12
Q ss_pred EeCCCC-----CCCCCCEEEecccCCCC----CcHHHHHHHHHHHHHHHhCC
Q psy9583 696 IVNDNC-----ETNIPNIYAIGDVVRGP----MLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 696 ~Vd~~l-----~Ts~~~VyA~GD~a~~~----~~~~~A~~~g~~aa~~i~g~ 738 (866)
.+++.. ....|..++-|....+. ...+....|++.++.-+.|.
T Consensus 281 ~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~ 332 (448)
T KOG1399|consen 281 TVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGR 332 (448)
T ss_pred eeccCcccchheeccchhhCccccccccCeeeEeecceehhhhhhHhhhcCC
Confidence 222222 12234445555222111 23455667777777777765
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.6e-14 Score=147.81 Aligned_cols=200 Identities=18% Similarity=0.280 Sum_probs=125.6
Q ss_pred eEEEecEEEEecCCCCcCCCCCc---C-CCceEecchhhhccc----------------cCCCeEEEE---CCcH-----
Q psy9583 529 ETITAKYIIIATGSKARSFPGVK---F-DENLILSNKGALEMI----------------NVPKKLCII---GAGV----- 580 (866)
Q Consensus 529 ~~i~~d~lViATGs~p~~~p~~~---~-~~~~~~t~~~~~~~~----------------~~~~~vvVI---GgG~----- 580 (866)
-++..-.+|+|||-.++...-.. + .-..++|..++.++. ..||+|+.| |+-.
T Consensus 297 ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n 376 (622)
T COG1148 297 VELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGN 376 (622)
T ss_pred EEEEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHhccCCCCCceEEecCCCCCCceEEEEEEecCcCcccCC
Confidence 36788899999998776432111 0 112344444433322 246888876 4422
Q ss_pred ---------HHHHHHHHHHhc--CCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeEEEEE
Q psy9583 581 ---------IGLEIGSIWRRL--GSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKIN-KENVLINY 648 (866)
Q Consensus 581 ---------~glE~A~~l~~~--g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~v~~ 648 (866)
.++.-|+.+.++ ..+|++++..-+ .+....-+.+.+.-++.||+++.+. +.+|... ++.+.+..
T Consensus 377 ~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR---afG~~yEefY~~~Q~~~gV~fIRGr-vaei~e~p~~~l~V~~ 452 (622)
T COG1148 377 PYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR---AFGKDYEEFYVRSQEDYGVRFIRGR-VAEIAEFPKKKLIVRV 452 (622)
T ss_pred hhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee---ccCccHHHHHHhhhhhhchhhhcCC-hHHheeCCCCeeEEEE
Confidence 122334444443 346787766433 2333333444444457899998654 4444443 44556666
Q ss_pred eeCCCCccceeEEEeccEEEEeeccccCCCCCC-ccccCeeecCCCcEEeC-CCCC---CCCCCEEEecccCCCCCcHHH
Q psy9583 649 SNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN-IDKIGLKVNENNFIIVN-DNCE---TNIPNIYAIGDVVRGPMLAHK 723 (866)
Q Consensus 649 ~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~-l~~~gl~~~~~G~i~Vd-~~l~---Ts~~~VyA~GD~a~~~~~~~~ 723 (866)
++. +.+...++++|+|++++|..|....-. .+.+||+.+++|++.-. ..++ |+.+|||.+|-| .+|+-...
T Consensus 453 EdT---l~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~a-qgPkdI~~ 528 (622)
T COG1148 453 EDT---LTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAA-QGPKDIAD 528 (622)
T ss_pred Eec---cCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecc-cCCccHHH
Confidence 532 223456899999999999998554321 35678999999998876 5554 789999999954 48999999
Q ss_pred HHHHHHHHHHHHh
Q psy9583 724 AEEEGIMVAEHIS 736 (866)
Q Consensus 724 A~~~g~~aa~~i~ 736 (866)
++.||..||....
T Consensus 529 siaqa~aAA~kA~ 541 (622)
T COG1148 529 SIAQAKAAAAKAA 541 (622)
T ss_pred HHHHhHHHHHHHH
Confidence 9999998887654
|
|
| >PRK11892 pyruvate dehydrogenase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.1e-14 Score=157.54 Aligned_cols=79 Identities=37% Similarity=0.603 Sum_probs=75.4
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC-EEecCCEEEEEecCCc
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS-IVTSNQVIALIDTDIS 82 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~-~v~~g~~l~~~~~~~~ 82 (866)
++|+||++|++|+||+|.+|+|++||.|++||+|++|||||++++++||.+|++.++++++|+ .|++|++|+.++.+++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 589999999999999999999999999999999999999999999999999999999999995 7999999999976543
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-13 Score=149.86 Aligned_cols=283 Identities=16% Similarity=0.163 Sum_probs=157.0
Q ss_pred ccceeeecCCccHHHHHHHHH-HCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLA-QLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~-~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
..+|+||||||||++||.+|. +.|++|+|||+. +.+||.+.+ |..|.+
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~------p~pgGLvR~-GVaPdh------------------------ 87 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKL------PNPYGLIRY-GVAPDH------------------------ 87 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecC------CCCccEEEE-eCCCCC------------------------
Confidence 468999999999999999765 679999999998 677886542 222211
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p 548 (866)
.....+. ..+...+...+++++.+..+..+ +.+ +...-.||.||+|||+.+..+|
T Consensus 88 ---~~~k~v~-----------~~f~~~~~~~~v~f~gnv~VG~D--------vt~---eeL~~~YDAVIlAtGA~~l~ip 142 (506)
T PTZ00188 88 ---IHVKNTY-----------KTFDPVFLSPNYRFFGNVHVGVD--------LKM---EELRNHYNCVIFCCGASEVSIP 142 (506)
T ss_pred ---ccHHHHH-----------HHHHHHHhhCCeEEEeeeEecCc--------cCH---HHHHhcCCEEEEEcCCCCCCCC
Confidence 0111111 11223344567776633222111 111 1122379999999999877666
Q ss_pred ------------CCcCC--CceEecchhhhcc-------------c------cCCCeEEEECCcHHHHHHHHHHH-----
Q psy9583 549 ------------GVKFD--ENLILSNKGALEM-------------I------NVPKKLCIIGAGVIGLEIGSIWR----- 590 (866)
Q Consensus 549 ------------~~~~~--~~~~~t~~~~~~~-------------~------~~~~~vvVIGgG~~glE~A~~l~----- 590 (866)
+.... ...+++..++..| . ...++++|||.|++++++|..|.
T Consensus 143 i~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~ 222 (506)
T PTZ00188 143 IGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDD 222 (506)
T ss_pred cccccceeeeccccccccccCcEEehheEEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHH
Confidence 33110 1223322222111 0 12468999999999999998753
Q ss_pred ---------------hcCC-cEEEEecCCcCCCcc------------------cH-H-----------------------
Q psy9583 591 ---------------RLGS-EVTILEMSSNFLNTV------------------DE-E----------------------- 612 (866)
Q Consensus 591 ---------------~~g~-~Vtli~~~~~~l~~~------------------d~-~----------------------- 612 (866)
+.+. +|+++.|+......| ++ +
T Consensus 223 L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~ 302 (506)
T PTZ00188 223 LSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEI 302 (506)
T ss_pred hhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhH
Confidence 3232 588887764321110 00 0
Q ss_pred HHHHHHHHHH----------HcCCEEEeCceEEEEEEcCCeE-EEEEee-----CCCCccceeEEEeccEEEEeeccccC
Q psy9583 613 IAKKAFHLLN----------KQGLNIILNTKIHDIKINKENV-LINYSN-----KSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 613 ~~~~l~~~l~----------~~GV~i~~~~~v~~i~~~~~~~-~v~~~~-----~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
..+.+.+... .+-+.|++...+.+|...++.+ .+.+.. .....+++...+++|+|+-++|++..
T Consensus 303 ~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~ 382 (506)
T PTZ00188 303 FQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPIDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKS 382 (506)
T ss_pred HHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECCCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCC
Confidence 1112222221 1345677778888887522222 233331 11112345678999999999999865
Q ss_pred CCCCCccccCeeecCCCcEEeCCCCCC--CCCCEEEecccCCCCC-cHHHHHHHHHHHHHHHhC
Q psy9583 677 TNNLNIDKIGLKVNENNFIIVNDNCET--NIPNIYAIGDVVRGPM-LAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 677 ~~~l~l~~~gl~~~~~G~i~Vd~~l~T--s~~~VyA~GD~a~~~~-~~~~A~~~g~~aa~~i~g 737 (866)
.- . |+.+| +. +.. ...+. ..|++|++|-+..+|. .+..-+..+.-.+..|+.
T Consensus 383 p~----~--g~pFd-~~-~~n-~~grv~~~~~g~Y~~GWiKrGP~GvIgtn~~da~~t~~~v~~ 437 (506)
T PTZ00188 383 NF----A--ENLYN-QS-VQM-FKEDIGQHKFAIFKAGWFDKGPKGNIASQILNSKNSTHLVLN 437 (506)
T ss_pred CC----C--CCCcc-cc-CCC-CCCcccCCCCCcEEeeecCcCCCceeccCcccHHHHHHHHHH
Confidence 31 1 34555 22 221 11222 3799999999997773 333333444445555543
|
|
| >KOG1800|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-13 Score=138.18 Aligned_cols=287 Identities=15% Similarity=0.218 Sum_probs=162.2
Q ss_pred ccceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
...|+|||+||||+++|.+|.++ +++|.++|+. +.++|.. .||+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~------PvPFGLv--------------------------RyGVAP 67 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKL------PVPFGLV--------------------------RYGVAP 67 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecC------Cccccee--------------------------eeccCC
Confidence 46899999999999999999884 6999999998 5555533 223322
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~ 546 (866)
..+... .....+...+++....++-+..+-. .+.+ ...+-.||.||||+|+. ++.
T Consensus 68 DHpEvK-------------nvintFt~~aE~~rfsf~gNv~vG~--------dvsl---~eL~~~ydavvLaYGa~~dR~ 123 (468)
T KOG1800|consen 68 DHPEVK-------------NVINTFTKTAEHERFSFFGNVKVGR--------DVSL---KELTDNYDAVVLAYGADGDRR 123 (468)
T ss_pred CCcchh-------------hHHHHHHHHhhccceEEEecceecc--------cccH---HHHhhcccEEEEEecCCCCcc
Confidence 211110 0001112223333333332222211 1111 11244699999999986 444
Q ss_pred CCCCcCCCceEecchhhhcccc------------CCCeEEEECCcHHHHHHHHHHHhc----------------------
Q psy9583 547 FPGVKFDENLILSNKGALEMIN------------VPKKLCIIGAGVIGLEIGSIWRRL---------------------- 592 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~------------~~~~vvVIGgG~~glE~A~~l~~~---------------------- 592 (866)
+.+++.+...+++.+.+..|.. ...+++|||.|.+++++|..|...
T Consensus 124 L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~ 203 (468)
T KOG1800|consen 124 LDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSN 203 (468)
T ss_pred cCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCC
Confidence 4444434455666665555442 247899999999999999887532
Q ss_pred CCcEEEEecCCcCCCccc--------------------------------------HHHHHHHHHHHHHc---------C
Q psy9583 593 GSEVTILEMSSNFLNTVD--------------------------------------EEIAKKAFHLLNKQ---------G 625 (866)
Q Consensus 593 g~~Vtli~~~~~~l~~~d--------------------------------------~~~~~~l~~~l~~~---------G 625 (866)
=.+|+++.|+..+...|. +++.+.+.+.+.++ +
T Consensus 204 VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~ 283 (468)
T KOG1800|consen 204 VKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGG 283 (468)
T ss_pred cceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCc
Confidence 125888877654322110 22333333333331 1
Q ss_pred C---EEEeCceEEEEEEcCCe---EEEEEeeCC---CCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEE
Q psy9583 626 L---NIILNTKIHDIKINKEN---VLINYSNKS---TNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFII 696 (866)
Q Consensus 626 V---~i~~~~~v~~i~~~~~~---~~v~~~~~~---g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 696 (866)
. .+.+......|..+.++ +.+..+... -...+...+++|++++.++|++...-. .|+.+|.+-.+.
T Consensus 284 ~k~w~~~f~r~P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~-----~gipFd~~kgvv 358 (468)
T KOG1800|consen 284 SKQWHLRFFRTPGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVD-----SGIPFDDKKGVV 358 (468)
T ss_pred cchhHHHHhcCHHHhccCcccccceEEEeeeehhhcccccCceEeeccceeEeeeeecccccC-----CCCCcccccCcc
Confidence 1 11111222333333221 211111111 122334678999999999998754321 145555443355
Q ss_pred eCCCCCC----CCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHhC
Q psy9583 697 VNDNCET----NIPNIYAIGDVVRGP-MLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 697 Vd~~l~T----s~~~VyA~GD~a~~~-~~~~~A~~~g~~aa~~i~g 737 (866)
-|...+. ..|++|++|-|..+| .....+++++...|+.|+.
T Consensus 359 ~n~~GrV~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~q 404 (468)
T KOG1800|consen 359 PNVNGRVLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQ 404 (468)
T ss_pred cCCCceEEeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHHH
Confidence 4544443 359999999999877 4677788888888888874
|
|
| >PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=113.04 Aligned_cols=62 Identities=23% Similarity=0.426 Sum_probs=60.4
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+.|..|++|+.++
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~V~~G~~l~~i~ 71 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDVIQAGDLIAVIS 71 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCEECCCCEEEEEC
Confidence 49999999999999999999999999999999999999999999999999999999999875
|
|
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-13 Score=136.74 Aligned_cols=204 Identities=16% Similarity=0.285 Sum_probs=126.0
Q ss_pred EEcCCceEEEecEEEEecCCCCc--CCCCCc--CCCceEec----------chhhhcccc------CCC-eEEEECCcHH
Q psy9583 523 IINKTKETITAKYIIIATGSKAR--SFPGVK--FDENLILS----------NKGALEMIN------VPK-KLCIIGAGVI 581 (866)
Q Consensus 523 v~~~~g~~i~~d~lViATGs~p~--~~p~~~--~~~~~~~t----------~~~~~~~~~------~~~-~vvVIGgG~~ 581 (866)
|.+.+|++|+||++|||+|-.-+ .++|.. ++.+.+.+ ...+.+... .|. -+-..|+-.-
T Consensus 124 v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQK 203 (446)
T KOG3851|consen 124 VVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQK 203 (446)
T ss_pred EEccCCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccCCceEEecCCCccccCCCchh
Confidence 34467899999999999997643 344431 22222221 111222111 122 2334466666
Q ss_pred HHHHHH-HHHhcCCc--EEEEecC--CcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCcc
Q psy9583 582 GLEIGS-IWRRLGSE--VTILEMS--SNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVK 656 (866)
Q Consensus 582 glE~A~-~l~~~g~~--Vtli~~~--~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~ 656 (866)
.+-++. .++++|.+ +.++... +.+. --....+.+++..++++|++.+...+.++..++.....+.-++.|.
T Consensus 204 i~yise~y~Rk~gvRd~a~iiy~Tsl~~iF--gVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~-- 279 (446)
T KOG3851|consen 204 IMYISESYFRKRGVRDNANIIYNTSLPTIF--GVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGV-- 279 (446)
T ss_pred hhhhhHHHHHHhCccccccEEEecCcccee--cHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCc--
Confidence 666665 45556653 4444432 2222 1356688899999999999999999988887654433222222243
Q ss_pred ceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC-CCC-CCCCCEEEecccCCCCC--cHHHHHHHHHHHH
Q psy9583 657 TEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND-NCE-TNIPNIYAIGDVVRGPM--LAHKAEEEGIMVA 732 (866)
Q Consensus 657 ~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~-~l~-Ts~~~VyA~GD~a~~~~--~~~~A~~~g~~aa 732 (866)
..+++++++-+.....+.. . +.++.+ .|..|++.||. .+| +.+||||++|||.+.|. .+..+..|..+.-
T Consensus 280 --t~ei~yslLHv~Ppms~pe-~--l~~s~~-adktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~ 353 (446)
T KOG3851|consen 280 --TEEIEYSLLHVTPPMSTPE-V--LANSDL-ADKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVD 353 (446)
T ss_pred --eeEEeeeeeeccCCCCChh-h--hhcCcc-cCcccceecChhhhccccCCCceeeccccCCCchhhHHHHHhcCchhh
Confidence 5688999888776655433 3 345554 46789999995 566 57999999999998774 4444556667777
Q ss_pred HHHh
Q psy9583 733 EHIS 736 (866)
Q Consensus 733 ~~i~ 736 (866)
+|+.
T Consensus 354 ~nl~ 357 (446)
T KOG3851|consen 354 KNLT 357 (446)
T ss_pred hhHH
Confidence 7775
|
|
| >cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) | Back alignment and domain information |
|---|
Probab=99.44 E-value=7e-13 Score=110.55 Aligned_cols=72 Identities=28% Similarity=0.601 Sum_probs=69.8
Q ss_pred EecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEE
Q psy9583 6 VKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77 (866)
Q Consensus 6 ~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~ 77 (866)
|.+|++|.++.+|++.+|++++||.|++||+|+++|++|+..+|.||.+|+|.+++++.|+.+..|+.|+.+
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEC
Confidence 678999999999999999999999999999999999999999999999999999999999999999999864
|
These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. |
| >PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-12 Score=105.75 Aligned_cols=62 Identities=21% Similarity=0.378 Sum_probs=60.3
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.|+|.+|++++||+|++||+|+++|+||+.+++.||.+|+|.++++++|+.|..|++|+.++
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCEECCCCEEEEEC
Confidence 39999999999999999999999999999999999999999999999999999999999985
|
|
| >PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.1e-12 Score=151.73 Aligned_cols=77 Identities=31% Similarity=0.579 Sum_probs=73.9
Q ss_pred CccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 1 m~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
|+ .+|+||+|| |+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|++|++|+.|+.+
T Consensus 1 m~-~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~V~~G~~l~~i~~~ 77 (633)
T PRK11854 1 MA-IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDKVETGALIMIFESA 77 (633)
T ss_pred CC-ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCEEeCCCEEEEEecc
Confidence 44 489999999 999999999999999999999999999999999999999999999999999999999999999865
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-10 Score=123.66 Aligned_cols=206 Identities=13% Similarity=0.138 Sum_probs=120.9
Q ss_pred cceeeecCCccHHHHHHHHHHC---CCeEEEEeccCCCcccccCCCccceeccc-------cchhHHHh-hHHHHHHhhh
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL---GFKTACIDEWKDNEENFALGGTCTNVGCI-------PSKALLQT-SHSFENVKNS 459 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~---g~~V~liek~~~~~~~~~~GG~~~~~g~~-------P~~~~~~~-~~~~~~~~~~ 459 (866)
++|+|||||++|++.|.+|.+. ...|.|||+. +.+|+...|...- |...+... ....+.+..+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~------~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~W 75 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPR------PNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRW 75 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccc------cccCCCccCCCCCchhhhccccccccccCCCCchHHHHH
Confidence 7899999999999999999887 2339999998 6777555444333 33333222 2323334443
Q ss_pred hhhcCcccc--ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCC---cEEEEeEEEEeccccCcccEEEEEcCCceEEEec
Q psy9583 460 FFEYGINTQ--NVTLNLQKMLERKNNIIKKNNSGILFLFKKNK---IKFFHGHAIFTGKIQNNFHEIQIINKTKETITAK 534 (866)
Q Consensus 460 ~~~~gi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---V~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d 534 (866)
+...+-... .....+...+..+.-+..++...+..++++.. +.++........... ......+...+|....+|
T Consensus 76 L~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~-n~~~~~~~~~~g~~~~ad 154 (474)
T COG4529 76 LQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT-NAGGYLVTTADGPSEIAD 154 (474)
T ss_pred HHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc-CCceEEEecCCCCeeeee
Confidence 433311100 00111222222233333444455566666554 667766666543311 234556666778889999
Q ss_pred EEEEecCCCCcCCCCC--cCCC-ceEe-cch--hhhccccCCCeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCC
Q psy9583 535 YIIIATGSKARSFPGV--KFDE-NLIL-SNK--GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSS 603 (866)
Q Consensus 535 ~lViATGs~p~~~p~~--~~~~-~~~~-t~~--~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~ 603 (866)
-+|+|||..+...+.. .+.+ ..++ +.. +.+.-.....+|+|+|.|.+-++....|.++|. +||++.|..
T Consensus 155 ~~Vlatgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 155 IIVLATGHSAPPADPAARDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred EEEEeccCCCCCcchhhhccCCCcceeccccCCcccccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc
Confidence 9999999765433221 1111 1111 111 222222345669999999999999999999876 589998865
|
|
| >TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-12 Score=148.67 Aligned_cols=79 Identities=38% Similarity=0.625 Sum_probs=75.8
Q ss_pred CccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 1 m~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
|+ ++|+||+||++|+||+|++|+|++||.|++||+|+++||||++++++||.+|+|.++++++|+.|++|++|+.++..
T Consensus 1 M~-~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 1 MA-FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDTVDIGGEIAIIGEA 79 (590)
T ss_pred CC-eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCEEeeeeeEEEEeec
Confidence 44 68999999999999999999999999999999999999999999999999999999999999999999999999753
|
This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=105.05 Aligned_cols=78 Identities=32% Similarity=0.554 Sum_probs=73.8
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEe
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYS 649 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~ 649 (866)
+++|||||++|+|+|..|.++|.+|+++++.+.+++.+++++...+++.|++.||++++++.+++++.+++++.++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~ 78 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLE 78 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999998877666665
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-12 Score=118.90 Aligned_cols=62 Identities=27% Similarity=0.421 Sum_probs=60.6
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
-|++.+.+|++||+|++||+||.||.||+.++|+||.+|+|.+|++++||.|..|++|+.|+
T Consensus 78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~Ve~G~~L~~I~ 139 (140)
T COG0511 78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDPVEYGDPLAVIE 139 (140)
T ss_pred ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCccCCCCEEEEec
Confidence 49999999999999999999999999999999999999999999999999999999999986
|
|
| >PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2 | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.5e-11 Score=118.38 Aligned_cols=174 Identities=10% Similarity=0.120 Sum_probs=127.4
Q ss_pred ccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeCC-eeEEccceeEEEEEecC
Q psy9583 192 NSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGN-NIIYHKYYDIGIAISSS 270 (866)
Q Consensus 192 ~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~~-~~~~~~~~~i~~av~~~ 270 (866)
..|.++++.++|+|+|.++.++. ++++...+++++++|+.++|+|+-++.++ ++++++.++.+.+|-.+
T Consensus 24 ~~p~~svT~~lDvT~l~~~~K~~----------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~~ 93 (206)
T PF00302_consen 24 DNPYFSVTVNLDVTNLYKYAKEK----------GLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFHK 93 (206)
T ss_dssp SBEEEEEEEEEE-HHHHHHHHHT----------T--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEET
T ss_pred CCceEecceeEEhHHHHHHHHHc----------CCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEeC
Confidence 56899999999999998776543 78999999999999999999999999987 99999999999999864
Q ss_pred -CceEEeEEecCCCCCHHHHHHHHHHHHHHHhcC-CCCccc-cCCceEEEEcCCCcCcccccccc-CCCc--eEEEEecc
Q psy9583 271 -RGLVVPILRNADTMSIADIEKKINEFINKAQDN-KLLPEE-MSGGTFTISNGGVFGSMLSTPII-NPPQ--SAILGVHA 344 (866)
Q Consensus 271 -~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~-~l~~~~-~~~gt~tisn~g~~g~~~~~~ii-~~p~--~~il~vg~ 344 (866)
++.+.-+-- .-..++.++.+...+.++++++. .+.+.+ .....|.+|++.|+.-++++--+ +.+. .++++.|+
T Consensus 94 ~~~tFs~~~~-~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK 172 (206)
T PF00302_consen 94 DDETFSFCWT-EYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGK 172 (206)
T ss_dssp TTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE-
T ss_pred CCCeEEEEEe-cCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeee
Confidence 565544433 34449999999999999998774 455543 56679999999999555543322 2222 57788887
Q ss_pred ceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 345 IKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 345 ~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
..++ +| |-.||+++...|.++||.+..++...
T Consensus 173 ~~~~----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~ 204 (206)
T PF00302_consen 173 YFEE----NG----RLLMPVSIQVHHALVDGYHVGQFFEE 204 (206)
T ss_dssp -EEE----TT----EEEEEEEEEEETTT--HHHHHHHHHH
T ss_pred eEeE----CC----EEEEEEEEEEecccccHHHHHHHHHH
Confidence 6542 32 67899999999999999998877653
|
3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F .... |
| >PRK07051 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=103.28 Aligned_cols=72 Identities=28% Similarity=0.311 Sum_probs=66.9
Q ss_pred CccEEEecCCCCCCCCeEEEEE-------EEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCE
Q psy9583 1 MALIEVKIPKLSESISEATLLN-------WHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQV 73 (866)
Q Consensus 1 m~~~~~~~p~~g~~~~~g~i~~-------w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~ 73 (866)
|+..+|..|. .|++.+ |++++||.|++||+++++|+||+.++|.||.+|+|.++++++|+.|..|++
T Consensus 1 ~~~~~~~ap~------~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~V~~G~~ 74 (80)
T PRK07051 1 MAQHEIVSPL------PGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEPVEAGQV 74 (80)
T ss_pred CCccEEeCCC------ceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCEECCCCE
Confidence 6778888884 367777 999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q psy9583 74 IALID 78 (866)
Q Consensus 74 l~~~~ 78 (866)
|+.++
T Consensus 75 l~~i~ 79 (80)
T PRK07051 75 LARIE 79 (80)
T ss_pred EEEEe
Confidence 99986
|
|
| >PRK13757 chloramphenicol acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=114.53 Aligned_cols=186 Identities=10% Similarity=0.105 Sum_probs=139.7
Q ss_pred HHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeCCeeEEc
Q psy9583 179 RLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYH 258 (866)
Q Consensus 179 r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~~~~~~~ 258 (866)
||.--....+. .. |.++++.++|+|+|.++.++. ++++.+.+++|+++|+.++|+|+-++.+++++.+
T Consensus 18 RkehF~~f~~~-~~-~~fsiT~~iDiT~l~~~~K~~----------~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~ 85 (219)
T PRK13757 18 RKEHFEAFQSV-AQ-CTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIW 85 (219)
T ss_pred cHHHHHHHhcC-CC-CceEEEEEEEHHHHHHHHHHc----------CCChHHHHHHHHHHHHhcCHhHheEEECCeEEEE
Confidence 44444444332 22 349999999999998766543 7899999999999999999999999999999999
Q ss_pred cceeEEEEEecCCc-eEEeEEecCCCCCHHHHHHHHHHHHHHHhcC-CCCccccCCceEEEEcCCCcCcccccc-ccCCC
Q psy9583 259 KYYDIGIAISSSRG-LVVPILRNADTMSIADIEKKINEFINKAQDN-KLLPEEMSGGTFTISNGGVFGSMLSTP-IINPP 335 (866)
Q Consensus 259 ~~~~i~~av~~~~g-l~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~-~l~~~~~~~gt~tisn~g~~g~~~~~~-ii~~p 335 (866)
+.++.+.++-.++. ++.- +.-.-.-++.++.+...+.++++++. .+.+.......|.||++.|+.-++++- +-+..
T Consensus 86 D~i~ps~Ti~~~~~~tFs~-~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~ 164 (219)
T PRK13757 86 DSVHPCYTVFHEQTETFSS-LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMD 164 (219)
T ss_pred eEEeeeEEEEeCCCceEEE-EEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCC
Confidence 99999999996664 4543 44444458999988888888888886 465555566799999999995444322 22222
Q ss_pred --ceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhhh
Q psy9583 336 --QSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF 385 (866)
Q Consensus 336 --~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~~ 385 (866)
.+++++.|+..+ ++| |-.||+++...|.++||.+..++...-
T Consensus 165 ~~~~P~it~GKy~~----~~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~l 208 (219)
T PRK13757 165 NFFAPVFTMGKYYT----QGD----KVLMPLAIQVHHAVCDGFHVGRMLNEL 208 (219)
T ss_pred CCcCcEEEeeceEE----ECC----EEEEEEEEEEehhccchHHHHHHHHHH
Confidence 236777776642 222 678999999999999999998876543
|
|
| >PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-11 Score=110.43 Aligned_cols=62 Identities=26% Similarity=0.337 Sum_probs=60.1
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEE
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~ 77 (866)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++||.|..|++|+.|
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQVVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCEeCCCCEEEEe
Confidence 35999999999999999999999999999999999999999999999999999999999987
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-11 Score=127.89 Aligned_cols=149 Identities=23% Similarity=0.372 Sum_probs=92.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccC--CCccceecc-ccchhHHHhh---H---------HHH
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL--GGTCTNVGC-IPSKALLQTS---H---------SFE 454 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~--GG~~~~~g~-~P~~~~~~~~---~---------~~~ 454 (866)
.+||+|||||||||.||..+++.|++|+|||+.+.+.+.-.+ ||.|..... .|...+...+ + ..+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 599999999999999999999999999999998544333332 566744332 2222221111 1 122
Q ss_pred HHhhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEec
Q psy9583 455 NVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAK 534 (866)
Q Consensus 455 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d 534 (866)
.+..+...+|+..... +..+++.. ..-...+.+.+...+++.||+++.++.+.. ++.....+.+.+.++.++.+|
T Consensus 83 d~i~~~e~~Gi~~~e~--~~Gr~Fp~-sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~--v~~~~~~f~l~t~~g~~i~~d 157 (408)
T COG2081 83 DFIDWVEGLGIALKEE--DLGRMFPD-SDKASPIVDALLKELEALGVTIRTRSRVSS--VEKDDSGFRLDTSSGETVKCD 157 (408)
T ss_pred HHHHHHHhcCCeeEEc--cCceecCC-ccchHHHHHHHHHHHHHcCcEEEecceEEe--EEecCceEEEEcCCCCEEEcc
Confidence 3334455556653211 01111110 001122334456668889999999998873 222335788888888889999
Q ss_pred EEEEecCCC
Q psy9583 535 YIIIATGSK 543 (866)
Q Consensus 535 ~lViATGs~ 543 (866)
.+|+|||+.
T Consensus 158 ~lilAtGG~ 166 (408)
T COG2081 158 SLILATGGK 166 (408)
T ss_pred EEEEecCCc
Confidence 999999943
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.2e-11 Score=138.45 Aligned_cols=153 Identities=17% Similarity=0.163 Sum_probs=78.9
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCccc-ccCCCccceecc--ccchhH----------------HHhhH
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEEN-FALGGTCTNVGC--IPSKAL----------------LQTSH 451 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~-~~~GG~~~~~g~--~P~~~~----------------~~~~~ 451 (866)
+||+|||+|.||++||..+++.|.+|+||||....... ..-||.+..... .|...+ .....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 79999999999999999999999999999997211000 001222211000 000000 00011
Q ss_pred HHHHHhhhhhhcCccccccc----cCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCC
Q psy9583 452 SFENVKNSFFEYGINTQNVT----LNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKT 527 (866)
Q Consensus 452 ~~~~~~~~~~~~gi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~ 527 (866)
.......++..+|+++.... ..+...+.........+.+.+...+++.+++++.+....+.. .+...+-+.. +
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~--~~g~v~Gv~~-~ 158 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAI--KNGKAYGVFL-D 158 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEe--eCCEEEEEEE-C
Confidence 11122234555666543210 011110000011112334445556677899998775444422 1112222322 3
Q ss_pred ceEEEecEEEEecCCCCcC
Q psy9583 528 KETITAKYIIIATGSKARS 546 (866)
Q Consensus 528 g~~i~~d~lViATGs~p~~ 546 (866)
+..+.++.||+|||+....
T Consensus 159 g~~i~a~~VVLATGG~~~~ 177 (466)
T PRK08401 159 GELLKFDATVIATGGFSGL 177 (466)
T ss_pred CEEEEeCeEEECCCcCcCC
Confidence 5679999999999987653
|
|
| >PRK11855 dihydrolipoamide acetyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-11 Score=139.31 Aligned_cols=79 Identities=34% Similarity=0.692 Sum_probs=75.1
Q ss_pred CccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 1 m~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
|+ .+++||++|+ |++|+|++|+|++||.|++||+|++|||||+.++|.||.+|+|.++++++|+.|.+|++|+.++..
T Consensus 1 M~-~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~V~~G~~L~~i~~~ 78 (547)
T PRK11855 1 MA-IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDTVSVGGLLAVIEAA 78 (547)
T ss_pred CC-ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCEecCCceeeEeccc
Confidence 44 5799999999 999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred C
Q psy9583 81 I 81 (866)
Q Consensus 81 ~ 81 (866)
.
T Consensus 79 ~ 79 (547)
T PRK11855 79 G 79 (547)
T ss_pred c
Confidence 3
|
|
| >PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.1e-11 Score=111.34 Aligned_cols=62 Identities=29% Similarity=0.517 Sum_probs=60.1
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEE
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~ 77 (866)
..|+|.+|++++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.|
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDTVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCEECCCCEEEEe
Confidence 35999999999999999999999999999999999999999999999999999999999987
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-10 Score=126.41 Aligned_cols=323 Identities=19% Similarity=0.216 Sum_probs=157.2
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCccccc--CCCccceecccc--c----------------hhHHHhhH
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFA--LGGTCTNVGCIP--S----------------KALLQTSH 451 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~--~GG~~~~~g~~P--~----------------~~~~~~~~ 451 (866)
||+|||+|.|||++|+.|.+. ++|+|+.|.+....++. -||.....+.-. . ........
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999998 99999999854433332 366553332111 1 11111111
Q ss_pred HHHHHhhhhhhcCccccccc---cCH--H------HHHHHHHHHHHhhhhhHHHHH-HhCCcEEEEeEEEE-eccccC-c
Q psy9583 452 SFENVKNSFFEYGINTQNVT---LNL--Q------KMLERKNNIIKKNNSGILFLF-KKNKIKFFHGHAIF-TGKIQN-N 517 (866)
Q Consensus 452 ~~~~~~~~~~~~gi~~~~~~---~~~--~------~~~~~~~~~~~~~~~~~~~~~-~~~gV~v~~g~~v~-~~~~~~-~ 517 (866)
.......++..+|+++.... +.+ + .++.-.....+.+...+.... +..+|+++.+.... +-..+. .
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~ 167 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG 167 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence 12223334666777764322 111 1 111111111222333333333 34799999986554 221111 1
Q ss_pred ccEEEEEcCCc--eEEEecEEEEecCCCCcCCCCCc----CCCceEe-------cchhhhccccCCCeEEEECCcHHHHH
Q psy9583 518 FHEIQIINKTK--ETITAKYIIIATGSKARSFPGVK----FDENLIL-------SNKGALEMINVPKKLCIIGAGVIGLE 584 (866)
Q Consensus 518 ~~~v~v~~~~g--~~i~~d~lViATGs~p~~~p~~~----~~~~~~~-------t~~~~~~~~~~~~~vvVIGgG~~glE 584 (866)
...+.+...++ ..+.++.+|||||+-...+.... ..+..+- ...+. ++.+...+.+-.+.+... -
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g~ly~~TTNp~~~~GdGIamA~rAGa~v~Dl-EFvQFHPT~l~~~~~~~~-L 245 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAKAVVLATGGLGGLYAYTTNPKGSTGDGIAMAWRAGAAVADL-EFVQFHPTALYIPQRRAF-L 245 (518)
T ss_pred EeEEEEecCCCeEEEEecCeEEEecCCCcccccccCCCccccccHHHHHHHcCCeecCc-cceeeccceecCCCCccc-e
Confidence 11344443332 67889999999997544321110 0010000 00000 001111122222211110 0
Q ss_pred HHHHHHhcCCcEEEEecCCcCCCccc-------H-HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCcc
Q psy9583 585 IGSIWRRLGSEVTILEMSSNFLNTVD-------E-EIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVK 656 (866)
Q Consensus 585 ~A~~l~~~g~~Vtli~~~~~~l~~~d-------~-~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~ 656 (866)
+...++--|. +-+-..+++|++.++ . -++..+..++++.|-.++++.+-.. .+ . +.
T Consensus 246 iSEAVRGEGA-~L~~~~GeRFm~~~~p~~ELAPRDVVARAI~~e~~~~g~~V~LD~s~~~--~~--~----~~------- 309 (518)
T COG0029 246 ISEAVRGEGA-ILVNEDGERFMPDYHPRGELAPRDVVARAIDAEMKRGGADVFLDISHIP--GD--F----FE------- 309 (518)
T ss_pred eehhhhcCcc-EEECCCCCccccCCCCccccchHHHHHHHHHHHHHhcCCeEEEeccCCC--ch--h----hh-------
Confidence 1112222222 222345667776432 2 2456667777777665554432211 00 0 00
Q ss_pred ceeEEEec-cEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCC-----CCCcHHHHHHHH--
Q psy9583 657 TEIITSIF-DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVR-----GPMLAHKAEEEG-- 728 (866)
Q Consensus 657 ~~~~~~~~-D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~-----~~~~~~~A~~~g-- 728 (866)
..++. ...+...|..|..+.++.-.. .-. -.|+|.||.+.||++|++||||.|+. ..++++++.-++
T Consensus 310 ---~rFP~I~~~c~~~GiD~~r~~IPV~Pa-aHY-~mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLASNSLLE~vV 384 (518)
T COG0029 310 ---RRFPTIYAACLKAGIDPTREPIPVVPA-AHY-TMGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLASNSLLECLV 384 (518)
T ss_pred ---hhCcHHHHHHHHcCCCcccCccCccch-hhe-ecccEEECCCCcccCcccEEeeeecccccccchhhhhhhHHHHHH
Confidence 01111 112233455555554322211 111 25779999999999999999999985 346787776665
Q ss_pred --HHHHHHHhCC
Q psy9583 729 --IMVAEHISGQ 738 (866)
Q Consensus 729 --~~aa~~i~g~ 738 (866)
.-+|++|.+.
T Consensus 385 ~g~~aA~~i~~~ 396 (518)
T COG0029 385 FGKRAAEDIAGR 396 (518)
T ss_pred HHHHHHHHhhcc
Confidence 5566666665
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-10 Score=135.86 Aligned_cols=44 Identities=25% Similarity=0.239 Sum_probs=38.8
Q ss_pred cEEeC-------------CCCCCCCCCEEEecccCC--CCCcHHHHHHHHHHHHHHHhC
Q psy9583 694 FIIVN-------------DNCETNIPNIYAIGDVVR--GPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 694 ~i~Vd-------------~~l~Ts~~~VyA~GD~a~--~~~~~~~A~~~g~~aa~~i~g 737 (866)
+|.|| ++++|++||+||+|||++ ...+.+.+..+|++|+.++..
T Consensus 371 Gi~vd~~~~~~~~~~~~~~~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~ 429 (608)
T PRK06854 371 GYWVSGPEDWVPEEYKWGYNRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVR 429 (608)
T ss_pred EEEecCcccccccccccccccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 48999 999999999999999975 467889999999999999863
|
|
| >PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-11 Score=85.37 Aligned_cols=38 Identities=39% Similarity=0.705 Sum_probs=33.4
Q ss_pred ccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHh
Q psy9583 100 NTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK 138 (866)
Q Consensus 100 ~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~ 138 (866)
++.+||+||++|+|+|||+++| +|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v-~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQV-KGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGS-SSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccc-cccCCCCcEeHHHhhC
Confidence 3568999999999999999999 8999999999999974
|
Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E .... |
| >TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-10 Score=133.85 Aligned_cols=75 Identities=29% Similarity=0.551 Sum_probs=72.5
Q ss_pred EEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 5 ~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
+|+||+||+. .+|+|++|+|++||.|++||+|++||+||+.++|+|+.+|+|.++++++|+.|.+|++|+.++..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~V~~G~~La~i~~~ 76 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDTLPVGGVIATLEVG 76 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCEEeccceEEEEecc
Confidence 6899999987 99999999999999999999999999999999999999999999999999999999999999754
|
This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model. |
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=132.97 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=37.6
Q ss_pred CcEEeCCCCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHhC
Q psy9583 693 NFIIVNDNCETNIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 693 G~i~Vd~~l~Ts~~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~g 737 (866)
|+|.||+.++|++||+||||||+. +......|.-.|+.|+.++..
T Consensus 357 Ggi~~d~~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~~ 402 (554)
T PRK08275 357 SGVWVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAE 402 (554)
T ss_pred CcEEECCCCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999975 334566788889999888764
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.4e-10 Score=129.95 Aligned_cols=32 Identities=34% Similarity=0.566 Sum_probs=30.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+|||+|.||++||..+++.|. |+|+||.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~ 33 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKA 33 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEcc
Confidence 4799999999999999999999997 9999997
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=131.45 Aligned_cols=47 Identities=28% Similarity=0.476 Sum_probs=38.2
Q ss_pred CCcEEeCCCCCCCCCCEEEecccCCCC--------CcHHHHHHHHHHHHHHHhCC
Q psy9583 692 NNFIIVNDNCETNIPNIYAIGDVVRGP--------MLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 692 ~G~i~Vd~~l~Ts~~~VyA~GD~a~~~--------~~~~~A~~~g~~aa~~i~g~ 738 (866)
.|+|.||+++||++||+||+|+|+++. .....|+-.|++|+++++..
T Consensus 348 ~GGi~vd~~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~ 402 (543)
T PRK06263 348 MGGIRINEDCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKN 402 (543)
T ss_pred cCCEEECCCCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHH
Confidence 477999999999999999999997532 12346788899999998753
|
|
| >PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=115.17 Aligned_cols=61 Identities=28% Similarity=0.361 Sum_probs=58.8
Q ss_pred EEEEE-------EEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 18 ATLLN-------WHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 18 g~i~~-------w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
|++.+ |+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 206 Gtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 206 GTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred eEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCEeCCCCEEEEec
Confidence 67777 99999999999999999999999999999999999999999999999999999985
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-10 Score=130.78 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=81.0
Q ss_pred ccCCCeEEEECCcHHHHHHHHH-------HHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 567 INVPKKLCIIGAGVIGLEIGSI-------WRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 567 ~~~~~~vvVIGgG~~glE~A~~-------l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
...++.++++|++++++|++.. +.++|.+|+++...+..+..+...+...+.+.+++.|+++++++.++++..
T Consensus 157 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~ 236 (557)
T PRK07843 157 GKVPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGLRIGLQRAGVPVLLNTPLTDLYV 236 (557)
T ss_pred ccccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHHHHHHHcCCCEEEeCCEEEEEEE
Confidence 4557889999999999998865 677888888776665555566777888899999999999999999999987
Q ss_pred cCCeEE-EEEeeCCCCccceeEEEecc-EEEEeec-cccCCCC
Q psy9583 640 NKENVL-INYSNKSTNVKTEIITSIFD-KLLIAIG-RIPNTNN 679 (866)
Q Consensus 640 ~~~~~~-v~~~~~~g~~~~~~~~~~~D-~vi~a~G-~~p~~~~ 679 (866)
+++.+. +.+.. ++. ...+.++ .||+|+| +.+|.++
T Consensus 237 ~~g~v~Gv~~~~-~g~----~~~i~A~~~VIlAtGG~~~n~~m 274 (557)
T PRK07843 237 EDGRVTGVHAAE-SGE----PQLIRARRGVILASGGFEHNEQM 274 (557)
T ss_pred eCCEEEEEEEEe-CCc----EEEEEeceeEEEccCCcCcCHHH
Confidence 655543 33332 333 3468885 6888775 6666655
|
|
| >cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.8e-10 Score=92.32 Aligned_cols=62 Identities=27% Similarity=0.448 Sum_probs=59.6
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEE
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~ 77 (866)
-+|++.+|++++||.|++||+|+++|++|...+|+||.+|+|.++.++.|+.|..|++|+.|
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCEECCCCEEEEC
Confidence 46999999999999999999999999999999999999999999999999999999999874
|
This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=127.87 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+|||+|.||++||..+++.|.+|+|+||..
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~ 49 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAA 49 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccC
Confidence 5999999999999999999999999999999973
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=128.90 Aligned_cols=113 Identities=11% Similarity=0.139 Sum_probs=85.1
Q ss_pred chhhhccccCCCeEEEECCcH--HHHHHHHHHHhcCCcEEEEecCCcCCCccc--------------HHHHHHHHHHHHH
Q psy9583 560 NKGALEMINVPKKLCIIGAGV--IGLEIGSIWRRLGSEVTILEMSSNFLNTVD--------------EEIAKKAFHLLNK 623 (866)
Q Consensus 560 ~~~~~~~~~~~~~vvVIGgG~--~glE~A~~l~~~g~~Vtli~~~~~~l~~~d--------------~~~~~~l~~~l~~ 623 (866)
.++..++...++++.|+|+++ ++.+++..+...+.+++++.+..++++.++ ..+...+.+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~ 226 (574)
T PRK12842 147 GKDMARLRPPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALD 226 (574)
T ss_pred hhhHHhhcCCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHh
Confidence 455566677789999999998 899999999999999888776666554332 4567778888899
Q ss_pred cCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEecc-EEEEeeccccCC
Q psy9583 624 QGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFD-KLLIAIGRIPNT 677 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D-~vi~a~G~~p~~ 677 (866)
.|+++++++.++++..+++.+. +.+...++ ...+.++ .||+|+|..++.
T Consensus 227 ~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~-----~~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 227 LGIPILTGTPARELLTEGGRVVGARVIDAGG-----ERRITARRGVVLACGGFSHD 277 (574)
T ss_pred CCCEEEeCCEEEEEEeeCCEEEEEEEEcCCc-----eEEEEeCCEEEEcCCCccch
Confidence 9999999999999987666543 33432223 2357786 799999977654
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.8e-10 Score=127.28 Aligned_cols=36 Identities=28% Similarity=0.474 Sum_probs=31.7
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
|+.++||||||+|.||++||..++ .|.+|+||||.+
T Consensus 1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~ 36 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGK 36 (433)
T ss_pred CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCC
Confidence 334699999999999999999985 699999999973
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-09 Score=134.01 Aligned_cols=67 Identities=24% Similarity=0.320 Sum_probs=46.8
Q ss_pred eccccCCCCCCccc--cCee-ecCCCcEEeCCCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q psy9583 671 IGRIPNTNNLNIDK--IGLK-VNENNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 671 ~G~~p~~~~l~l~~--~gl~-~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~-~~~~~~A~~~g~~aa~~i~g 737 (866)
.|..|..+.+.... .... -...|+|+||.+++|++||+||+|||++. ......|.-.|+.|+.++..
T Consensus 337 ~G~d~~~~~i~v~p~~~~~~~~~~~GGi~vd~~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~ 407 (897)
T PRK13800 337 RGHDYRTHDIEMHISEIGLCSGHSASGVWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAG 407 (897)
T ss_pred cCCCcccccceecccccccccCCCcceEEecCCCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHH
Confidence 47777776643111 1111 01247799999999999999999999864 34556788889999888864
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=128.26 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=31.9
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
|..++||+|||+|.||++||+++++. .+|+|+||..
T Consensus 2 ~~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 2 QQHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred cceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 33468999999999999999999986 8999999973
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.9e-10 Score=129.55 Aligned_cols=47 Identities=23% Similarity=0.334 Sum_probs=37.8
Q ss_pred CCcEEeCCCCCCCCCCEEEecccCC-CC--------CcHHHHHHHHHHHHHHHhCC
Q psy9583 692 NNFIIVNDNCETNIPNIYAIGDVVR-GP--------MLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 692 ~G~i~Vd~~l~Ts~~~VyA~GD~a~-~~--------~~~~~A~~~g~~aa~~i~g~ 738 (866)
.|+|.||.+++|++||+||+|||++ +. .....|+-.|++|++++...
T Consensus 358 ~GGi~vd~~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~ 413 (582)
T PRK09231 358 MGGIETDQNCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAER 413 (582)
T ss_pred CCCEEECCCCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 5779999999999999999999974 21 23456777899999998753
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=127.28 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=37.7
Q ss_pred CCcEEeCCCCCCCCCCEEEecccCC-CC--------CcHHHHHHHHHHHHHHHhCC
Q psy9583 692 NNFIIVNDNCETNIPNIYAIGDVVR-GP--------MLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 692 ~G~i~Vd~~l~Ts~~~VyA~GD~a~-~~--------~~~~~A~~~g~~aa~~i~g~ 738 (866)
.|+|.||.+.||++||+||+|+|++ +. .....|.-.|++|++++...
T Consensus 353 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~ 408 (536)
T PRK09077 353 CGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSR 408 (536)
T ss_pred cCCeeECCCCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHh
Confidence 5779999999999999999999973 22 23456777899999998753
|
|
| >TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.7e-10 Score=106.46 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=58.6
Q ss_pred EEEEE-------EEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 18 ATLLN-------WHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 18 g~i~~-------w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
|++.+ |+|++||.|++||+||.||+||+.++|+|+.+|+|.+++++.|+.|..|++|+.|+
T Consensus 89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 77876 99999999999999999999999999999999999999999999999999999874
|
The gene name is accB or fabE. |
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.4e-09 Score=121.79 Aligned_cols=39 Identities=21% Similarity=0.222 Sum_probs=33.1
Q ss_pred CCCCCCCCCEEEecccCC--CCCcHHHHHHHHHHHHHHHhC
Q psy9583 699 DNCETNIPNIYAIGDVVR--GPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 699 ~~l~Ts~~~VyA~GD~a~--~~~~~~~A~~~g~~aa~~i~g 737 (866)
...+|++||+||+|||++ ...++.+|..+|.+++.++..
T Consensus 400 ~~~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~ 440 (614)
T TIGR02061 400 YNRMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVR 440 (614)
T ss_pred cCCccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHH
Confidence 778899999999999975 245888999999999988764
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.1e-09 Score=118.61 Aligned_cols=187 Identities=14% Similarity=0.160 Sum_probs=95.6
Q ss_pred cceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccceeccccchhHHHh----------hHHHHHHhh
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT----------SHSFENVKN 458 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~----------~~~~~~~~~ 458 (866)
++|+|||||++|+++|.+|.+.+ .+|+|||+. ..+|....+...-+++.++.. ....+....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~------~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~ 75 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA------DEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQK 75 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC------CCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhh
Confidence 68999999999999999998864 589999997 455633322222222211111 011111100
Q ss_pred ----hhhhcCccccccccCHHHHHHH--HHHHHHhhhhhHHHHHHhCC--cEEEEeEEEE-eccccCcccEEEEEcC-Cc
Q psy9583 459 ----SFFEYGINTQNVTLNLQKMLER--KNNIIKKNNSGILFLFKKNK--IKFFHGHAIF-TGKIQNNFHEIQIINK-TK 528 (866)
Q Consensus 459 ----~~~~~gi~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g--V~v~~g~~v~-~~~~~~~~~~v~v~~~-~g 528 (866)
.+..+++..... +-..+..+ ...++......+...+...| +.++.+..+. +.. ....+.+.+. ++
T Consensus 76 ~~~~~~~~~g~~~~~l--~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~---~~~g~~V~t~~gg 150 (534)
T PRK09897 76 QEDSHLQRYGVKKETL--HDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQI---TNAGVMLATNQDL 150 (534)
T ss_pred hhHHHHHhcCCcceee--cCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEE---eCCEEEEEECCCC
Confidence 011122211000 00001100 01111111222233344555 6666664444 322 2345666653 34
Q ss_pred eEEEecEEEEecCCCCcCCCCCcCCCceEe-cch--hhhccccCCCeEEEECCcHHHHHHHHHHHhc
Q psy9583 529 ETITAKYIIIATGSKARSFPGVKFDENLIL-SNK--GALEMINVPKKLCIIGAGVIGLEIGSIWRRL 592 (866)
Q Consensus 529 ~~i~~d~lViATGs~p~~~p~~~~~~~~~~-t~~--~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~ 592 (866)
..+.+|+||+|||..+...+ . ....++ +.. ...... .+.+|+|+|.|+++++.+..|...
T Consensus 151 ~~i~aD~VVLAtGh~~p~~~--~-~~~~yi~~pw~~~~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 151 PSETFDLAVIATGHVWPDEE--E-ATRTYFPSPWSGLMEAKV-DACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred eEEEcCEEEECCCCCCCCCC--h-hhccccCCCCcchhhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence 78999999999997532111 1 111111 111 111111 268999999999999999888765
|
|
| >cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases | Back alignment and domain information |
|---|
Probab=99.02 E-value=3e-09 Score=88.36 Aligned_cols=73 Identities=42% Similarity=0.769 Sum_probs=70.5
Q ss_pred EEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEE
Q psy9583 5 EVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77 (866)
Q Consensus 5 ~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~ 77 (866)
++.+|+++....+|+|.+|+++.|+.|..|++++.+|++|+..++.+|.+|++.+..+.+|+.+..|++|+++
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCEeCCCCEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999874
|
2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. |
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=128.65 Aligned_cols=33 Identities=36% Similarity=0.596 Sum_probs=31.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||+|||+|.||++||..+++.|.+|+||||.
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~ 67 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQ 67 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecC
Confidence 489999999999999999999999999999986
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=127.27 Aligned_cols=33 Identities=36% Similarity=0.690 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||||||+|.||++||..+++.|.+|+|+||.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~ 37 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKV 37 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEcc
Confidence 489999999999999999999999999999997
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-09 Score=126.63 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=38.0
Q ss_pred CCcEEeCCCCCCCCCCEEEecccCC-C-C-------CcHHHHHHHHHHHHHHHhCC
Q psy9583 692 NNFIIVNDNCETNIPNIYAIGDVVR-G-P-------MLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 692 ~G~i~Vd~~l~Ts~~~VyA~GD~a~-~-~-------~~~~~A~~~g~~aa~~i~g~ 738 (866)
.|.|.+|+..+|++||+||+|+|++ + . .....|+-.|++|+++++..
T Consensus 357 ~GGi~~d~~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~ 412 (580)
T TIGR01176 357 MGGIETDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAER 412 (580)
T ss_pred CCCeeECcCcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 5779999999999999999999973 2 1 23456788899999998753
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-09 Score=121.91 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=30.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||||||+|.||++||.++++ |.+|+||||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~ 35 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKT 35 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccC
Confidence 5899999999999999999976 89999999983
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-09 Score=126.26 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=30.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||||||+|.||++||..+++ |.+|+||||.
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~ 40 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLPS-HLRVGLITKD 40 (553)
T ss_pred cCCEEEECccHHHHHHHHHhhc-CCCEEEEEcc
Confidence 5899999999999999999964 9999999997
|
|
| >PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=103.92 Aligned_cols=61 Identities=26% Similarity=0.395 Sum_probs=58.1
Q ss_pred EEEEE-------EEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 18 ATLLN-------WHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 18 g~i~~-------w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
|++.. |+|++||.|++||+||.||+||+..+|+||.+|+|.+++++.|+.|..|++|+.++
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 67765 99999999999999999999999999999999999999999999999999999874
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=124.35 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=31.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..||||||+|.||++||+.+++.|.+|+||||.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 479999999999999999999999999999997
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=125.50 Aligned_cols=32 Identities=34% Similarity=0.557 Sum_probs=30.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||||||+|.||++||+.+++.| +|+|+||.
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~ 60 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKD 60 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECC
Confidence 489999999999999999999999 99999997
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-09 Score=124.82 Aligned_cols=244 Identities=15% Similarity=0.225 Sum_probs=135.8
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceec---cccchhHHHhhHHHHHHhh---hhhh
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG---CIPSKALLQTSHSFENVKN---SFFE 462 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g---~~P~~~~~~~~~~~~~~~~---~~~~ 462 (866)
.++||+|||+|.+|++||..+++.|.+|+||||. ..+||.|...+ |+|.+.+............ .+..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~------~~~gg~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 84 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKD------PVFGGTTAWSGGWMWIPRNPLARRAGIVEDIEQPRTYLRH 84 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecC------CCCCccccccCceeecCccHHhhhccccchHHHHHHHHHH
Confidence 3599999999999999999999999999999997 56888887665 5666554433222111111 0100
Q ss_pred cCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHh-CCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecC
Q psy9583 463 YGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATG 541 (866)
Q Consensus 463 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATG 541 (866)
.. ....+...+. .+.+.-... ..|+.+ .++++..... . ..+.....-.++|
T Consensus 85 ~~----~~~~~~~l~~----~~~~~s~~~-~~wl~~~~gv~~~~~~~--~-----------------~d~~~~~~~~~~g 136 (581)
T PRK06134 85 EL----GARYDAARID----AFLEAGPHM-VAFFERHTALRFADGNA--I-----------------PDYHGDTPGAATG 136 (581)
T ss_pred Hh----CcCCCHHHHH----HHHhccHHH-HHHHHhcCCceeeecCC--C-----------------CCCCCCCCCCCCC
Confidence 00 0011111111 111111112 234444 3555521100 0 0011111113445
Q ss_pred CCCcCC-CCCcCCCceEecchhhhccccCCCeEEEECCcHHH-HHHHHHHHhcCCcEEEEecCCcCCCc-----------
Q psy9583 542 SKARSF-PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIG-LEIGSIWRRLGSEVTILEMSSNFLNT----------- 608 (866)
Q Consensus 542 s~p~~~-p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~g-lE~A~~l~~~g~~Vtli~~~~~~l~~----------- 608 (866)
.++..+ +..+ ... .++...+...+.++.++|++.++ .+++..+...+..+.+..+..++++.
T Consensus 137 gr~~~~~~~~g---~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (581)
T PRK06134 137 GRSLIAAPFDG---REL--GALLERLRKPLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGM 211 (581)
T ss_pred CCeeccCCCCh---hhh--hHHHHHhccccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCC
Confidence 443322 1111 000 13344455556777888888766 67887777766665554443332221
Q ss_pred ---ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEec-cEEEEeeccccC
Q psy9583 609 ---VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIF-DKLLIAIGRIPN 676 (866)
Q Consensus 609 ---~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~-D~vi~a~G~~p~ 676 (866)
....+...+.+.+++.|+++++++.++++..+++.+. +.+...++ ...+.+ +.||+|+|.-.+
T Consensus 212 ~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~-----~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 212 HLVNGNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGG-----LQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred cccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCc-----EEEEEeCCEEEEcCCCccc
Confidence 2345667888889999999999999999876655443 33433232 246788 999999986554
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.4e-09 Score=119.24 Aligned_cols=146 Identities=22% Similarity=0.316 Sum_probs=73.8
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccC--CCccceec-cccchhHH-----------Hh--hHHHH
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL--GGTCTNVG-CIPSKALL-----------QT--SHSFE 454 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~--GG~~~~~g-~~P~~~~~-----------~~--~~~~~ 454 (866)
|||+|||||||||.||..|++.|.+|+|+||++.+..+-.. +|.|.... ......+. .. .....
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 79999999999999999999999999999998443222221 37775444 21111111 00 01122
Q ss_pred HHhhhhhhcCcccccc----ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCce
Q psy9583 455 NVKNSFFEYGINTQNV----TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKE 529 (866)
Q Consensus 455 ~~~~~~~~~gi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~ 529 (866)
.+..++.+.|++.... .+.... . ...+.+.+...+++.||+++.++.+. +.. .+...+.|.++++.
T Consensus 81 d~~~ff~~~Gv~~~~~~~gr~fP~s~---~----a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~f~v~~~~~~ 151 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEEDGRVFPKSD---K----ASSVVDALLEELKRLGVEIHFNTRVKSIEK--KEDGVFGVKTKNGG 151 (409)
T ss_dssp HHHHHHHHTT--EEE-STTEEEETT---------HHHHHHHHHHHHHHHT-EEE-S--EEEEEE--ETTEEEEEEETTTE
T ss_pred HHHHHHHhcCCeEEEcCCCEECCCCC---c----HHHHHHHHHHHHHHcCCEEEeCCEeeeeee--cCCceeEeeccCcc
Confidence 3444566677753211 111110 1 12223345666788899999998877 321 12244777765668
Q ss_pred EEEecEEEEecCCCCc
Q psy9583 530 TITAKYIIIATGSKAR 545 (866)
Q Consensus 530 ~i~~d~lViATGs~p~ 545 (866)
.+.+|+||||||+..+
T Consensus 152 ~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 152 EYEADAVILATGGKSY 167 (409)
T ss_dssp EEEESEEEE----SSS
T ss_pred cccCCEEEEecCCCCc
Confidence 9999999999997643
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.7e-09 Score=124.24 Aligned_cols=63 Identities=25% Similarity=0.464 Sum_probs=61.1
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEec
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~ 79 (866)
.|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+.|.+|++|+.|+.
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~V~~G~~L~~I~~ 595 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDKVTPGQVLIRVEV 595 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCEECCCCEEEEEeC
Confidence 499999999999999999999999999999999999999999999999999999999999963
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-09 Score=126.55 Aligned_cols=33 Identities=45% Similarity=0.866 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||||||+|.||++||..+++.|.+|+||||.
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~ 82 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL 82 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence 489999999999999999999999999999997
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-09 Score=125.42 Aligned_cols=32 Identities=38% Similarity=0.621 Sum_probs=30.6
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
||||||+|.||++||..+++.|.+|+||||..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 79999999999999999999999999999973
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=125.25 Aligned_cols=33 Identities=45% Similarity=0.914 Sum_probs=31.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||||||||.||++||+.+++.|.+|+|+||.
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~ 61 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKL 61 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence 589999999999999999999999999999997
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.6e-09 Score=125.78 Aligned_cols=33 Identities=24% Similarity=0.549 Sum_probs=30.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCC--CeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG--FKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~ 422 (866)
++||+|||||.||++||+++++.| .+|+|+||.
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~ 37 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKT 37 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEecc
Confidence 589999999999999999999874 899999997
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.1e-09 Score=122.32 Aligned_cols=35 Identities=23% Similarity=0.503 Sum_probs=32.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCC---CeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLG---FKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g---~~V~liek~~ 423 (866)
.++||+|||||.||++||..+++.| .+|+|+||..
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 3589999999999999999999998 8999999973
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-09 Score=124.16 Aligned_cols=34 Identities=35% Similarity=0.434 Sum_probs=32.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||||||||.||++||..+++.|.+|+|+||.+
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~ 38 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVP 38 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4899999999999999999999999999999973
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.8e-09 Score=123.13 Aligned_cols=33 Identities=45% Similarity=0.857 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||||||||.||++||+.+++.|.+|+|+||.
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~ 44 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKV 44 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 589999999999999999999999999999997
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.6e-09 Score=124.47 Aligned_cols=34 Identities=35% Similarity=0.576 Sum_probs=32.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||||||+|.||++||..+++.|.+|+||||..
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 4899999999999999999999999999999973
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-08 Score=119.02 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.2
Q ss_pred CCcEEeCCCCCCCCCCEEEecccCCCC----C----cHHHHHHHHHHHHHHHhC
Q psy9583 692 NNFIIVNDNCETNIPNIYAIGDVVRGP----M----LAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 692 ~G~i~Vd~~l~Ts~~~VyA~GD~a~~~----~----~~~~A~~~g~~aa~~i~g 737 (866)
.|.|.+|...+|++||+||+|+|+++. . ....+.-.|++|++++..
T Consensus 370 ~gG~~~d~~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~ 423 (603)
T TIGR01811 370 MGGLWVDYDQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIP 423 (603)
T ss_pred CCCeeECCCCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 477999999999999999999997532 2 234567778888888764
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.2e-08 Score=110.52 Aligned_cols=32 Identities=44% Similarity=0.612 Sum_probs=30.9
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
|||+|||||+||+.||..+++.|.+|+|+|+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 69999999999999999999999999999986
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.1e-08 Score=118.25 Aligned_cols=33 Identities=39% Similarity=0.733 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||||||+|.||++||+.+++.|.+|+||||.
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 589999999999999999999999999999997
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.3e-06 Score=93.45 Aligned_cols=136 Identities=18% Similarity=0.215 Sum_probs=90.3
Q ss_pred cCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEee
Q psy9583 592 LGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAI 671 (866)
Q Consensus 592 ~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~ 671 (866)
.|+.|.-+-..+.- -....+.+.+.+.+++.|++++.++.|.++..+++.+....+. ++. ...+.+|.+|+|+
T Consensus 246 ~g~~v~E~ptlPPS--v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~-~g~----~~~l~AD~vVLAa 318 (419)
T TIGR03378 246 TGLTLCELPTMPPS--LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTR-NHR----DIPLRADHFVLAS 318 (419)
T ss_pred HCCCEEeCCCCCCC--CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEec-CCc----cceEECCEEEEcc
Confidence 46666654332221 2356778889999999999999999999998777766643322 321 1379999999999
Q ss_pred ccc-cCCCCC-Cc----c-ccCeee--------------------cCCCcEEeCCCCCC-----CCCCEEEecccCCCCC
Q psy9583 672 GRI-PNTNNL-NI----D-KIGLKV--------------------NENNFIIVNDNCET-----NIPNIYAIGDVVRGPM 719 (866)
Q Consensus 672 G~~-p~~~~l-~l----~-~~gl~~--------------------~~~G~i~Vd~~l~T-----s~~~VyA~GD~a~~~~ 719 (866)
|.- ... ++ .+ | -.++.+ ..-| |.+|++||. ..+|+||+|-+.+++.
T Consensus 319 Gaw~S~g-L~a~l~~i~Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~G-V~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d 396 (419)
T TIGR03378 319 GSFFSNG-LVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFG-VKTDAQLRPSRGGQTIENLYAIGAVLGGYD 396 (419)
T ss_pred CCCcCHH-HHhhcCceeeeccCCCcCCCcchhhhcchhhcCCChhhhcC-ceEccccCccCCCcccccceEechhhcCCC
Confidence 976 321 10 00 0 001111 1123 889999983 3899999999998764
Q ss_pred c------HHHHHHHHHHHHHHHh
Q psy9583 720 L------AHKAEEEGIMVAEHIS 736 (866)
Q Consensus 720 ~------~~~A~~~g~~aa~~i~ 736 (866)
. .-.|+..|..||++|+
T Consensus 397 ~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 397 PIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred hHhcCCCchhHHHHHHHHHHhhC
Confidence 2 3478888888988873
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-08 Score=117.37 Aligned_cols=33 Identities=36% Similarity=0.615 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||||||+|.||++||.++++.|.+|+|+||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~ 39 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKV 39 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence 489999999999999999999999999999997
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.9e-08 Score=114.22 Aligned_cols=47 Identities=28% Similarity=0.370 Sum_probs=36.4
Q ss_pred CCcEEeCCCCCCCCCCEEEecccCC-CC----Cc----HHHHHHHHHHHHHHHhCC
Q psy9583 692 NNFIIVNDNCETNIPNIYAIGDVVR-GP----ML----AHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 692 ~G~i~Vd~~l~Ts~~~VyA~GD~a~-~~----~~----~~~A~~~g~~aa~~i~g~ 738 (866)
.|+|.||...+|++||+||+|+|++ +. .+ ...+.-.|++|++++...
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~ 396 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGT 396 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999973 22 12 345667789999988654
|
|
| >TIGR02712 urea_carbox urea carboxylase | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.6e-09 Score=128.95 Aligned_cols=62 Identities=21% Similarity=0.405 Sum_probs=60.5
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.|+|.+|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~V~~G~~l~~i~ 1201 (1201)
T TIGR02712 1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDMVDAGDIVAVLE 1201 (1201)
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCEeCCCCEEEEeC
Confidence 59999999999999999999999999999999999999999999999999999999999875
|
Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-08 Score=117.99 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=56.4
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEE
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVI 74 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l 74 (866)
.|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+.|.+|++|
T Consensus 525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~V~~G~~l 582 (582)
T TIGR01108 525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDAVSVGQVL 582 (582)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCCC
Confidence 4999999999999999999999999999999999999999999999999999999975
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.2e-08 Score=113.66 Aligned_cols=145 Identities=19% Similarity=0.280 Sum_probs=76.4
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhh-------hhh
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKN-------SFF 461 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~-------~~~ 461 (866)
.+|||+|||||+||+.||..+++.|.+|+|||+.. ..+|+. +|.|+.......+..+.+.. ...
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~-----d~iG~m----~CnpsiGG~akg~lvrEidalGg~~g~~~d 73 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNL-----DTIGQM----SCNPAIGGIAKGHLVREIDALGGEMGKAID 73 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccc-----cccccc----CCccccccchhhHHHHHHHhcCCHHHHHHh
Confidence 35999999999999999999999999999999862 245542 34443332222222221110 011
Q ss_pred hcCccccccccCH-HHHH-HHHHHHHHhhhhhHHHHHHh-CCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEE
Q psy9583 462 EYGINTQNVTLNL-QKML-ERKNNIIKKNNSGILFLFKK-NKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIII 538 (866)
Q Consensus 462 ~~gi~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lVi 538 (866)
..++........- .... .+.+-....+...+...+++ .+++++.+.+..+.. .+....-|.+.+|..+.++.||+
T Consensus 74 ~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~--e~grV~GV~t~dG~~I~Ak~VIl 151 (618)
T PRK05192 74 KTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIV--ENGRVVGVVTQDGLEFRAKAVVL 151 (618)
T ss_pred hccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEe--cCCEEEEEEECCCCEEECCEEEE
Confidence 1111110000000 0000 00000011122333344444 489988776554322 11222335556678899999999
Q ss_pred ecCCCC
Q psy9583 539 ATGSKA 544 (866)
Q Consensus 539 ATGs~p 544 (866)
|||...
T Consensus 152 ATGTFL 157 (618)
T PRK05192 152 TTGTFL 157 (618)
T ss_pred eeCcch
Confidence 999753
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2e-08 Score=116.16 Aligned_cols=62 Identities=21% Similarity=0.350 Sum_probs=60.1
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.|+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.+.
T Consensus 532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~V~~G~~L~~I~ 593 (593)
T PRK14040 532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDAVAVGDTLLTLA 593 (593)
T ss_pred cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999999873
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-08 Score=102.19 Aligned_cols=137 Identities=25% Similarity=0.302 Sum_probs=75.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceecc-ccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGC-IPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~-~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++||+||||||||++||++|++.|++|+|+|+. ..+||.+...+. .+.... .......+..++++..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~------~~~Ggg~~~gg~~~~~~~v------~~~~~~~l~~~gv~~~ 92 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERK------LSFGGGMWGGGMLFNKIVV------QEEADEILDEFGIRYK 92 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecC------CCCCCccccCccccccccc------hHHHHHHHHHCCCCce
Confidence 589999999999999999999999999999997 455543221111 111111 0111222445555532
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccC-cccEEEEEc---------CCceEEEecEEE
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQN-NFHEIQIIN---------KTKETITAKYII 537 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~-~~~~v~v~~---------~~g~~i~~d~lV 537 (866)
.....+.. . .. ..+...+.....+.|++++.++.+. +...+. ....+.+.. .+..++.++.||
T Consensus 93 ~~~~g~~~-v-d~----~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI 166 (257)
T PRK04176 93 EVEDGLYV-A-DS----VEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVV 166 (257)
T ss_pred eecCccee-c-cH----HHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence 21111000 0 01 1222334555677899999887655 211111 111222210 123579999999
Q ss_pred EecCCCC
Q psy9583 538 IATGSKA 544 (866)
Q Consensus 538 iATGs~p 544 (866)
+|||...
T Consensus 167 ~ATG~~a 173 (257)
T PRK04176 167 DATGHDA 173 (257)
T ss_pred EEeCCCc
Confidence 9999653
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-08 Score=122.71 Aligned_cols=67 Identities=16% Similarity=0.456 Sum_probs=62.2
Q ss_pred CCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 11 LSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 11 ~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
++..| .|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+
T Consensus 1077 I~a~~-~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1143 (1143)
T TIGR01235 1077 VGAPM-PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQIDAKDLLLVLE 1143 (1143)
T ss_pred eecCC-CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCEECCCCEEEEeC
Confidence 33443 49999999999999999999999999999999999999999999999999999999999874
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.3e-08 Score=107.79 Aligned_cols=138 Identities=18% Similarity=0.257 Sum_probs=75.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHh---hH--HHHHHhhhhhhcC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT---SH--SFENVKNSFFEYG 464 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~---~~--~~~~~~~~~~~~g 464 (866)
+|||+||||||||++||+.|++.|++|+|+||+ ..+|..+...+.+....+... .. .............
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~------~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~ 76 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKG------SEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFP 76 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecC------CCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEec
Confidence 499999999999999999999999999999998 344432222111111111000 00 0000000000000
Q ss_pred -----cccc---ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEE
Q psy9583 465 -----INTQ---NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYI 536 (866)
Q Consensus 465 -----i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~l 536 (866)
+... ...++... +.+.+....++.|++++.++.+.....+.. ..+.....++.+++++.+
T Consensus 77 ~~~~~~~~~~~~~y~v~R~~-----------fd~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~a~~v 144 (396)
T COG0644 77 GEKVAIEVPVGEGYIVDRAK-----------FDKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVRAGDDEVRAKVV 144 (396)
T ss_pred CCceEEecCCCceEEEEhHH-----------hhHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEEcCCEEEEcCEE
Confidence 0000 11111111 222355667788999999988773221112 222222233378999999
Q ss_pred EEecCCCCc
Q psy9583 537 IIATGSKAR 545 (866)
Q Consensus 537 ViATGs~p~ 545 (866)
|.|+|....
T Consensus 145 I~AdG~~s~ 153 (396)
T COG0644 145 IDADGVNSA 153 (396)
T ss_pred EECCCcchH
Confidence 999997654
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.7e-07 Score=98.02 Aligned_cols=33 Identities=39% Similarity=0.681 Sum_probs=32.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||+||||||||++||+.|++.|++|+|+||.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~ 53 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERS 53 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 599999999999999999999999999999998
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.1e-08 Score=111.06 Aligned_cols=62 Identities=27% Similarity=0.483 Sum_probs=60.6
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.|+|.+|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+.|..|++|+.++
T Consensus 530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 591 (592)
T PRK09282 530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDRVNPGDVLMEIE 591 (592)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCEeCCCCEEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999986
|
|
| >COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-06 Score=84.07 Aligned_cols=171 Identities=11% Similarity=0.056 Sum_probs=131.0
Q ss_pred ccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeCCeeEEccceeEEEEEecCC
Q psy9583 192 NSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSR 271 (866)
Q Consensus 192 ~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~~~~~~~~~~~i~~av~~~~ 271 (866)
..||+....+.|+|++-...++. +++++..+++|+.+++.++++|+-++.++...+++.+++.++|..++
T Consensus 27 ~~p~y~i~~~LDvtn~~~~vk~~----------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~~ 96 (219)
T COG4845 27 QYPHYDINLQLDVTNFYGYVKEN----------GLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHGE 96 (219)
T ss_pred ccceEeeeeeeehhHHHHHHHHc----------CCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcCC
Confidence 57999999999999887666543 78999999999999999999999999999999999999999999866
Q ss_pred ceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCC-c-cccCCceEEEEcCCCcCccccccccCCCc------eEEEEec
Q psy9583 272 GLVVPILRNADTMSIADIEKKINEFINKAQDNKLL-P-EEMSGGTFTISNGGVFGSMLSTPIINPPQ------SAILGVH 343 (866)
Q Consensus 272 gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~-~-~~~~~gt~tisn~g~~g~~~~~~ii~~p~------~~il~vg 343 (866)
+-..-++----+.+..++++...+-+++.+++.-. + +.-..--.-+||+.|+ .||.+-.+=+ ..|+.-|
T Consensus 97 ~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWl---sFtslS~~~~~~k~~~~PiF~~G 173 (219)
T COG4845 97 TETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWL---SFTSLSHHYRRNKIYGQPIFYAG 173 (219)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEecccccc---ceeeeeeeccCCccccceeEeec
Confidence 53334444446779999999999888988887532 2 2223457889999999 7777654433 2344444
Q ss_pred cceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhh
Q psy9583 344 AIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLM 383 (866)
Q Consensus 344 ~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~ 383 (866)
+-. .+||.+ .++++....|..+||-....+..
T Consensus 174 rf~----~~~Gkl----~lPlavq~hHA~vDG~Hi~~l~~ 205 (219)
T COG4845 174 RFY----EEDGKL----TLPLAVQAHHANVDGFHIGQLFD 205 (219)
T ss_pred cee----ccCCeE----EEeEEEEecccccchhhHHHHHH
Confidence 432 245554 46789999999999988765543
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-06 Score=86.01 Aligned_cols=123 Identities=17% Similarity=0.169 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCC----------
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL---------- 680 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l---------- 680 (866)
-.+.+.+...+++.|.-++.+..|...+-.++.++-..+. +.. ...+.+|..++|+|.--...+.
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~tr-n~~----diP~~a~~~VLAsGsffskGLvae~d~I~EPI 332 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTR-NHA----DIPLRADFYVLASGSFFSKGLVAERDKIYEPI 332 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEec-ccc----cCCCChhHeeeeccccccccchhhhhhhhcch
Confidence 3456778888999999999999999988877777654443 222 2367899999999853222110
Q ss_pred -CccccCe----eecC----------CCcEEeCCCCCC-----CCCCEEEecccCCCCCc------HHHHHHHHHHHHHH
Q psy9583 681 -NIDKIGL----KVNE----------NNFIIVNDNCET-----NIPNIYAIGDVVRGPML------AHKAEEEGIMVAEH 734 (866)
Q Consensus 681 -~l~~~gl----~~~~----------~G~i~Vd~~l~T-----s~~~VyA~GD~a~~~~~------~~~A~~~g~~aa~~ 734 (866)
.++-... ++.. .-++.+|+++|. ..+|+||||-+.+++.. .-+|+..|..||+.
T Consensus 333 f~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~q 412 (421)
T COG3075 333 FDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQ 412 (421)
T ss_pred hhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHH
Confidence 0000000 0000 013888888875 36899999999987643 24677788888888
Q ss_pred HhCC
Q psy9583 735 ISGQ 738 (866)
Q Consensus 735 i~g~ 738 (866)
|+..
T Consensus 413 i~~~ 416 (421)
T COG3075 413 IAER 416 (421)
T ss_pred HHHH
Confidence 7653
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.6e-07 Score=102.37 Aligned_cols=45 Identities=33% Similarity=0.504 Sum_probs=36.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~ 434 (866)
+|||+||||||||++||..|++.|++|+||||.+.|......||.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~ 49 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGR 49 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccce
Confidence 599999999999999999999999999999998544333333443
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.1e-07 Score=104.81 Aligned_cols=141 Identities=20% Similarity=0.252 Sum_probs=75.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHh-hhhhhcC-cccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVK-NSFFEYG-INTQ 468 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~-~~~~~~g-i~~~ 468 (866)
+||+||||||||++||..|++.|++|+|+|+. ...+..| .+++|...+.... ...... ....... +...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~------~~~~~~c--g~~i~~~~l~~~g-~~~~~~~~~i~~~~~~~p~ 71 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERK------PDNAKPC--GGAIPLCMVDEFA-LPRDIIDRRVTKMKMISPS 71 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecC------CCCCCCc--cccccHhhHhhcc-CchhHHHhhhceeEEecCC
Confidence 58999999999999999999999999999997 2333444 2445543322110 000000 0000000 0001
Q ss_pred ccccCHHH---------HHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEecccc--CcccEEEEEcCC-----c--eE
Q psy9583 469 NVTLNLQK---------MLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQ--NNFHEIQIINKT-----K--ET 530 (866)
Q Consensus 469 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~--~~~~~v~v~~~~-----g--~~ 530 (866)
...+++.. .+.+ ..+...+.....+.|++++.++...+.... .....+++...+ + .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~v~R-----~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~ 146 (398)
T TIGR02028 72 NIAVDIGRTLKEHEYIGMLRR-----EVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCT 146 (398)
T ss_pred ceEEEeccCCCCCCceeeeeH-----HHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccE
Confidence 11111110 0111 122234555567789999888754431111 111234433221 2 57
Q ss_pred EEecEEEEecCCCCc
Q psy9583 531 ITAKYIIIATGSKAR 545 (866)
Q Consensus 531 i~~d~lViATGs~p~ 545 (866)
+++|.||.|+|..+.
T Consensus 147 i~a~~VIgADG~~S~ 161 (398)
T TIGR02028 147 LEVDAVIGADGANSR 161 (398)
T ss_pred EEeCEEEECCCcchH
Confidence 999999999998764
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.4e-07 Score=101.83 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=34.2
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
|.+.+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 1 m~~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 1 MAAVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 5567899999999999999999999999999999974
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-08 Score=110.22 Aligned_cols=142 Identities=23% Similarity=0.244 Sum_probs=38.8
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhH----HHhhHHHHHHhhhhhhcCccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL----LQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~----~~~~~~~~~~~~~~~~~gi~~ 467 (866)
||||||||+||++||+.+++.|.+|+|||+. ..+||.....+..+.... .........+...+...+-..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~------~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~ 74 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKG------GFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYP 74 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SS------SSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECC------ccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccc
Confidence 8999999999999999999999999999998 678887755543321111 111222222222222111000
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc-eEEEecEEEEecCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK-ETITAKYIIIATGS 542 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs 542 (866)
......|....... ...+...+..++.+.|+++++++.+. +...+.....+.+.+.+| .++.++.+|-|||-
T Consensus 75 ~~~~~~~~~~~~~~---~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 75 QEDRYGWVSNVPFD---PEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00011111000000 11222345566778899999998876 322111224455544333 78999999999994
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.8e-07 Score=103.39 Aligned_cols=36 Identities=39% Similarity=0.594 Sum_probs=33.5
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
..++||||||||.|||.||..+++.|.+|+|+||..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~ 39 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAP 39 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccc
Confidence 346999999999999999999999999999999973
|
|
| >COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-07 Score=102.63 Aligned_cols=62 Identities=27% Similarity=0.445 Sum_probs=60.5
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.|+|+...|++|++|.+||+|+.+|.|||+..|.||.+|+|.++.+.+|+.|..|++|+.++
T Consensus 583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~V~~g~vLve~~ 644 (645)
T COG4770 583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQVAVGTVLVEFE 644 (645)
T ss_pred CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCccccCceEEEec
Confidence 49999999999999999999999999999999999999999999999999999999999986
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.1e-07 Score=100.30 Aligned_cols=36 Identities=22% Similarity=0.453 Sum_probs=33.3
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
...+||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 346899999999999999999999999999999974
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-06 Score=85.14 Aligned_cols=33 Identities=42% Similarity=0.687 Sum_probs=31.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..||+|||+||+||+||++|++.|++|+|||++
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ 62 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERK 62 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEee
Confidence 379999999999999999999999999999997
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.4e-07 Score=95.80 Aligned_cols=33 Identities=39% Similarity=0.753 Sum_probs=31.6
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
|||+|||||++|+++|..|++.|.+|+|||+.+
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 699999999999999999999999999999984
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.9e-07 Score=86.83 Aligned_cols=132 Identities=27% Similarity=0.325 Sum_probs=65.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHH-hhHHHHHHhhhhhhcCcccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ-TSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~-~~~~~~~~~~~~~~~gi~~~ 468 (866)
++||+||||||+|++||+.|++.|++|++||++ ..+||....-|..-++...+ .+.. .+.++|++..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~------~~~GGg~~~Gg~lf~~iVVq~~a~~------iL~elgi~y~ 84 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERK------LSPGGGMWGGGMLFNKIVVQEEADE------ILDELGIPYE 84 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESS------SS-BTTTTS-CTT---EEEETTTHH------HHHHHT---E
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecC------CCCCccccccccccchhhhhhhHHH------HHHhCCceeE
Confidence 599999999999999999999999999999997 45655432222222222111 1111 1444555543
Q ss_pred ccc-----cCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-e-ccccCcccEEEEE-c---C-----CceEEE
Q psy9583 469 NVT-----LNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-T-GKIQNNFHEIQII-N---K-----TKETIT 532 (866)
Q Consensus 469 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~-~~~~~~~~~v~v~-~---~-----~g~~i~ 532 (866)
+.. .+-..+. ..+....-+.|+.++....+. + -..+..-..+.+. + . |-..++
T Consensus 85 ~~~~g~~v~d~~~~~-----------s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ 153 (230)
T PF01946_consen 85 EYGDGYYVADSVEFT-----------STLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIR 153 (230)
T ss_dssp E-SSEEEES-HHHHH-----------HHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEE
T ss_pred EeCCeEEEEcHHHHH-----------HHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEE
Confidence 211 1111111 112223345899998887766 1 1110011112221 1 1 225899
Q ss_pred ecEEEEecCCCC
Q psy9583 533 AKYIIIATGSKA 544 (866)
Q Consensus 533 ~d~lViATGs~p 544 (866)
++.+|=|||...
T Consensus 154 ak~ViDaTGHda 165 (230)
T PF01946_consen 154 AKVVIDATGHDA 165 (230)
T ss_dssp ESEEEE---SSS
T ss_pred EeEEEeCCCCch
Confidence 999999999643
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.7e-07 Score=96.08 Aligned_cols=139 Identities=19% Similarity=0.240 Sum_probs=73.9
Q ss_pred ccceeeecCCccHHHHHHHHHHC-CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~-g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++||+|||||++|+.||+.|++. |++|+|||+. ..+||.+...|........... ....+.++|++..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~------~~~GGG~~~gg~l~~~~vv~~~-----a~e~LeElGV~fd 160 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQS------VSPGGGAWLGGQLFSAMVVRKP-----AHLFLDELGVPYD 160 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecC------cccccceeeCcccccccccccH-----HHHHHHHcCCCcc
Confidence 58999999999999999999986 8999999997 4555432222211111111111 1122455676653
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEE------Ec-CC-----ceEEEecE
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQI------IN-KT-----KETITAKY 535 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v------~~-~~-----g~~i~~d~ 535 (866)
.. -++... .+...+. ...+....++.+++++.++.+. +-..+.....+.+ .. .+ ...+.+++
T Consensus 161 ~~-dgy~vv-~ha~e~~---stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~Aka 235 (357)
T PLN02661 161 EQ-ENYVVI-KHAALFT---STIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKV 235 (357)
T ss_pred cC-CCeeEe-cchHHHH---HHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCE
Confidence 22 011000 0101111 1112234455789999887755 2111111122222 11 11 13689999
Q ss_pred EEEecCCCC
Q psy9583 536 IIIATGSKA 544 (866)
Q Consensus 536 lViATGs~p 544 (866)
+|+|||...
T Consensus 236 VVlATGh~g 244 (357)
T PLN02661 236 VVSSCGHDG 244 (357)
T ss_pred EEEcCCCCC
Confidence 999999653
|
|
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-05 Score=86.03 Aligned_cols=45 Identities=29% Similarity=0.327 Sum_probs=41.2
Q ss_pred cEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC
Q psy9583 694 FIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 694 ~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~ 738 (866)
.+.+|+.+.|+.+|+|++||+++..+-...|...|..+|+.|+.+
T Consensus 438 ri~~d~~~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k 482 (486)
T COG2509 438 RIKVDEDLSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARK 482 (486)
T ss_pred eEeecccceeeecceEEccccccccchhHHHhhhhHHHHHHHHHH
Confidence 489999999999999999999998888999999999999998743
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.1e-07 Score=103.37 Aligned_cols=45 Identities=33% Similarity=0.533 Sum_probs=36.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~ 434 (866)
+|||+||||||||++||+.|++.|++|+||||.+.|......||.
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~ 49 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGR 49 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCce
Confidence 599999999999999999999999999999998544333333443
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.6e-07 Score=113.93 Aligned_cols=62 Identities=23% Similarity=0.421 Sum_probs=60.5
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.|+|++|+|++||.|++||+|+.+|+||+..+|.||.+|+|.++++++|+.|..|++|+.++
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~V~~g~~l~~i~ 1145 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQVEAGDLLVELE 1145 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCEECCCCEEEEEc
Confidence 49999999999999999999999999999999999999999999999999999999999986
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=96.42 Aligned_cols=34 Identities=32% Similarity=0.286 Sum_probs=31.8
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~ 424 (866)
.||+|||||++|+.||+.|++.|++|+|||+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCc
Confidence 6899999999999999999999999999998643
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.7e-06 Score=96.95 Aligned_cols=54 Identities=24% Similarity=0.567 Sum_probs=48.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceec---cccchhHHHhh
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG---CIPSKALLQTS 450 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g---~~P~~~~~~~~ 450 (866)
++||||||+| +|++||..+++.|.+|+||||. +.+||+|.+.| |+|.+.+....
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~------~~~GG~~~~~gG~~~~~~~~~~~~~ 72 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHELGLSVLIVEKS------SYVGGSTARSGGAFWLPASPVLDEA 72 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHHCCCcEEEEecC------CCCcCcccCcCCCEecCChHHHHHh
Confidence 5999999999 8999999999999999999997 68999999998 88887665443
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-06 Score=98.93 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=72.9
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhh-cCcccccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFE-YGINTQNV 470 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~-~gi~~~~~ 470 (866)
||+|||||+||+++|..|++.|++|+|||+. +..|+.+. +++.+. .+... .......+.+.. ..+.....
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~------~~~~~~~~-~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~ 71 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPH------PPIPGNHT-YGVWDD-DLSDL-GLADCVEHVWPDVYEYRFPKQ 71 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccC------CCCCCCcc-ccccHh-hhhhh-chhhHHhhcCCCceEEecCCc
Confidence 7999999999999999999999999999997 34554331 111110 00000 000000010100 00000000
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
...+... +..-....+...+...+.+.+++++.+....+.. .....+.+..+++.+++++.||.|+|..+
T Consensus 72 ~~~~~~~--~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~--~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 72 PRKLGTA--YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEA--DGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred chhcCCc--eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEe--cCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 0000000 0000011222334445566789887766555432 11244555555667899999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-06 Score=92.63 Aligned_cols=99 Identities=19% Similarity=0.226 Sum_probs=81.0
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc---C--------CCcc-----cHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN---F--------LNTV-----DEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~---~--------l~~~-----d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
+++|||||+.|+++|..|.+.|.+|+++++.+. + .+.+ +.++...+.+.+++.|+++++ +.++
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v~ 80 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY-EEVI 80 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE-EEEE
Confidence 589999999999999999999999999998651 1 1222 367888999999999999998 8999
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+++.+++.+.+... ++. .+.+|.+++|+|..|+...
T Consensus 81 ~v~~~~~~~~v~~~--~~~------~~~~d~liiAtG~~~~~~~ 116 (300)
T TIGR01292 81 KVDLSDRPFKVKTG--DGK------EYTAKAVIIATGASARKLG 116 (300)
T ss_pred EEEecCCeeEEEeC--CCC------EEEeCEEEECCCCCcccCC
Confidence 99887766666553 454 7999999999999887654
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-06 Score=94.42 Aligned_cols=129 Identities=23% Similarity=0.321 Sum_probs=69.3
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhh-------hhhhcC
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKN-------SFFEYG 464 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~-------~~~~~g 464 (866)
||+|||||+||+.||+.+++.|.+|+|+.... +.+|.. .|.|+..-.........+.. .....+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~-----d~i~~~----~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~ 71 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNT-----DTIGEM----SCNPSIGGIAKGHLVREIDALGGLMGRAADETG 71 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-G-----GGTT------SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecc-----cccccc----cchhhhccccccchhHHHhhhhhHHHHHHhHhh
Confidence 79999999999999999999999999994321 334432 34443221111111111110 011111
Q ss_pred c-----------ccccc--ccCHHHHHHHHHHHHHhhhhhHHHHHHh-CCcEEEEeEEEEeccccCcccEEEEEcCCceE
Q psy9583 465 I-----------NTQNV--TLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFFHGHAIFTGKIQNNFHEIQIINKTKET 530 (866)
Q Consensus 465 i-----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~ 530 (866)
+ ..... .+|-..+.. .+...++. .+++++.+.+..+... ....+-|.+.+|..
T Consensus 72 i~~~~lN~skGpav~a~r~qvDr~~y~~-----------~~~~~l~~~~nl~i~~~~V~~l~~e--~~~v~GV~~~~g~~ 138 (392)
T PF01134_consen 72 IHFRMLNRSKGPAVHALRAQVDRDKYSR-----------AMREKLESHPNLTIIQGEVTDLIVE--NGKVKGVVTKDGEE 138 (392)
T ss_dssp EEEEEESTTS-GGCTEEEEEE-HHHHHH-----------HHHHHHHTSTTEEEEES-EEEEEEC--TTEEEEEEETTSEE
T ss_pred hhhhcccccCCCCccchHhhccHHHHHH-----------HHHHHHhcCCCeEEEEcccceEEec--CCeEEEEEeCCCCE
Confidence 1 11111 222222222 23334444 7999998877665331 23445566678899
Q ss_pred EEecEEEEecCC
Q psy9583 531 ITAKYIIIATGS 542 (866)
Q Consensus 531 i~~d~lViATGs 542 (866)
+.+|.+|+|||.
T Consensus 139 ~~a~~vVlaTGt 150 (392)
T PF01134_consen 139 IEADAVVLATGT 150 (392)
T ss_dssp EEECEEEE-TTT
T ss_pred EecCEEEEeccc
Confidence 999999999997
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.2e-07 Score=102.54 Aligned_cols=142 Identities=15% Similarity=0.262 Sum_probs=77.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchh--HHHhhHHHHHHhhh---h--hh
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKA--LLQTSHSFENVKNS---F--FE 462 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~--~~~~~~~~~~~~~~---~--~~ 462 (866)
++||+||||||+|+++|..|++.|++|+|||+.+.+. ..+. ..+++.... ++......+.+... . ..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~----~~~~--Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~ 76 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQE----LVGS--RAGGLHARTLEVLDQRGIADRFLAQGQVAQVTG 76 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC----CCCc--ceeeECHHHHHHHHHcCcHHHHHhcCCccccce
Confidence 4899999999999999999999999999999974321 0111 011122111 11111111111110 0 00
Q ss_pred cC---ccccccc--cCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEE
Q psy9583 463 YG---INTQNVT--LNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYI 536 (866)
Q Consensus 463 ~g---i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~l 536 (866)
++ +...... ..+...+. ...+...+...+++.+++++.++.+. +.. +...+.+...++.++.+|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~i~-----q~~le~~L~~~l~~~gv~i~~~~~v~~v~~---~~~~v~v~~~~g~~i~a~~v 148 (488)
T PRK06834 77 FAATRLDISDFPTRHNYGLALW-----QNHIERILAEWVGELGVPIYRGREVTGFAQ---DDTGVDVELSDGRTLRAQYL 148 (488)
T ss_pred eeeEecccccCCCCCCcccccc-----HHHHHHHHHHHHHhCCCEEEcCCEEEEEEE---cCCeEEEEECCCCEEEeCEE
Confidence 00 0000000 00100000 11233445556677899999988776 322 22455565555678999999
Q ss_pred EEecCCCCc
Q psy9583 537 IIATGSKAR 545 (866)
Q Consensus 537 ViATGs~p~ 545 (866)
|.|.|..+.
T Consensus 149 VgADG~~S~ 157 (488)
T PRK06834 149 VGCDGGRSL 157 (488)
T ss_pred EEecCCCCC
Confidence 999998764
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-06 Score=93.42 Aligned_cols=31 Identities=32% Similarity=0.561 Sum_probs=30.4
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
||+|||||++|+++|++|++.|++|+|+|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 7999999999999999999999999999997
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=9.2e-07 Score=102.17 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=33.3
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
|..++||||||+|+||++||.+|++.|.+|+||||.
T Consensus 1 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~ 36 (466)
T PRK08274 1 MASMVDVLVIGGGNAALCAALAAREAGASVLLLEAA 36 (466)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334699999999999999999999999999999997
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-06 Score=96.66 Aligned_cols=33 Identities=30% Similarity=0.730 Sum_probs=31.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.|||+||||||||+++|..|++.|++|+|||+.
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~ 60 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPS 60 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEeccC
Confidence 489999999999999999999999999999986
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=101.76 Aligned_cols=34 Identities=24% Similarity=0.620 Sum_probs=32.6
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.++||||||+|.||++||+.+++.|.+|+||||.
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~ 93 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKM 93 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 4689999999999999999999999999999998
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-06 Score=100.42 Aligned_cols=31 Identities=39% Similarity=0.588 Sum_probs=28.5
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
||||||+|.||++||++|++.|.+|+||||.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~ 31 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKG 31 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESS
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEee
Confidence 8999999999999999999999999999998
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.2e-06 Score=84.95 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=26.3
Q ss_pred eeecCCccHHHHHHHHHHC-----CCeEEEEecc
Q psy9583 394 IVIGAGPGGYVASIRLAQL-----GFKTACIDEW 422 (866)
Q Consensus 394 vIIGgG~AGl~aA~~L~~~-----g~~V~liek~ 422 (866)
+|||+|++|++++.+|.+. ..+|+|||+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~ 34 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPS 34 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence 5999999999999999987 4689999995
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.7e-05 Score=88.49 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
.+...+.+.+++.|++++.++.|++++.+++.+.+.+...++. +..++.+|.||+|+|..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~---~~~~i~a~~vV~a~G~~ 257 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEH---PSRTLEFDGVVVCAGVG 257 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCC---ccceEecCEEEECCCcC
Confidence 4566777888899999999999999987776666655432210 01268999999999965
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.9e-06 Score=93.83 Aligned_cols=34 Identities=35% Similarity=0.572 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||+|||||+||+++|..|++.|++|+|+|+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRA 38 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4899999999999999999999999999999984
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-06 Score=97.45 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=31.2
Q ss_pred cceeeecCCccHHHHHHHHHHCC--CeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~ 423 (866)
|||+||||||+|+++|..|++.| ++|+|||+.+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 89999999999999999999995 9999999973
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.3e-06 Score=92.52 Aligned_cols=32 Identities=25% Similarity=0.560 Sum_probs=31.2
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~ 422 (866)
+||+|||||.+|+++|++|+++ |++|+|+|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 8999999999999999999999 9999999997
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-06 Score=101.60 Aligned_cols=34 Identities=41% Similarity=0.725 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+||||||+|+++|..|++.|++|+||||.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3899999999999999999999999999999974
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.2e-06 Score=96.93 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=33.1
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
....||+|||||++|+++|..|++.|++|+|+||.+
T Consensus 2 ~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 2 TKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 335899999999999999999999999999999974
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-05 Score=91.38 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=61.9
Q ss_pred cHHHHHHHHHHHhcCCcEEEEecCCcCC---CcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEc--CC-e-E-EEEEee
Q psy9583 579 GVIGLEIGSIWRRLGSEVTILEMSSNFL---NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKIN--KE-N-V-LINYSN 650 (866)
Q Consensus 579 G~~glE~A~~l~~~g~~Vtli~~~~~~l---~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~-~-~-~v~~~~ 650 (866)
-.++.|+..++.++=.++.-+.....+. ..-...+...+.+.|+++||+|+++++|+++..+ ++ + + .+.+..
T Consensus 191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~ 270 (576)
T PRK13977 191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTR 270 (576)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEe
Confidence 3689999999887733322222222221 1123677889999999999999999999999874 22 2 2 233332
Q ss_pred CCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 651 KSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 651 ~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+|. .........|.||+++|.--...-
T Consensus 271 -~~~-~~~I~l~~~DlVivTnGs~t~ns~ 297 (576)
T PRK13977 271 -NGK-EETIDLTEDDLVFVTNGSITESST 297 (576)
T ss_pred -CCc-eeEEEecCCCEEEEeCCcCccccc
Confidence 222 112335678999999996544433
|
|
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.7e-07 Score=99.67 Aligned_cols=67 Identities=19% Similarity=0.466 Sum_probs=62.6
Q ss_pred CCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 11 LSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 11 ~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
+|..|. |+|++..|++||.|++||+|+.+|.|||+..|.||.+|+|.+++|+.|+.|..|+.|..++
T Consensus 1082 igApmp-G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~i~~gDLLi~~~ 1148 (1149)
T COG1038 1082 IGAPMP-GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQIDGGDLLVVVE 1148 (1149)
T ss_pred cCCCCC-CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCccccCceEEEcc
Confidence 445554 8999999999999999999999999999999999999999999999999999999998875
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-06 Score=97.20 Aligned_cols=33 Identities=39% Similarity=0.545 Sum_probs=31.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+|||+||||||||++||..|++.|++|+|+|+.
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~ 71 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERK 71 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 599999999999999999999999999999997
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.7e-06 Score=93.28 Aligned_cols=36 Identities=36% Similarity=0.558 Sum_probs=33.3
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++.+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 346899999999999999999999999999999974
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-06 Score=98.90 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=33.4
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
...+||+|||||+||+++|..|++.|++|+|||+.+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 345999999999999999999999999999999984
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.8e-06 Score=95.69 Aligned_cols=32 Identities=41% Similarity=0.672 Sum_probs=31.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
|||+||||||||++||+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999996
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=93.96 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=32.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||||||+|.||++||.++++.|.+|+|+||.
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~ 52 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERA 52 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 589999999999999999999999999999997
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.1e-05 Score=85.29 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
..+...+.+.+++.|++++.++.|.+++.+++.+.+... ++ ++.+|.||+|+|..
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~--~~-------~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTT--KG-------SYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeC--CC-------EEEeCEEEEecCcc
Confidence 455677777888899999999999999887766655442 33 68899999999964
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.6e-06 Score=94.84 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=74.2
Q ss_pred eeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceec---cccc-----hhH-HHh---hHH---------
Q psy9583 394 IVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG---CIPS-----KAL-LQT---SHS--------- 452 (866)
Q Consensus 394 vIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g---~~P~-----~~~-~~~---~~~--------- 452 (866)
+|||||+||++||..|++.|++|+|+|+. +.+|+.+...| |... ..+ ... ...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~------~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKN------KKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFS 74 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecC------ccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCC
Confidence 69999999999999999999999999998 34444322211 1110 000 000 000
Q ss_pred HHHHhhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEE
Q psy9583 453 FENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETI 531 (866)
Q Consensus 453 ~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i 531 (866)
......++...|+...... ...++.. ......+...+...+++.+++++.+..+. +.. ....+.+..+ +..+
T Consensus 75 ~~d~~~~~~~~Gv~~~~~~--~g~~~p~-~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~---~~~~~~v~~~-~~~i 147 (400)
T TIGR00275 75 NKDLIDFFESLGLELKVEE--DGRVFPC-SDSAADVLDALLNELKELGVEILTNSKVKSIKK---DDNGFGVETS-GGEY 147 (400)
T ss_pred HHHHHHHHHHcCCeeEEec--CCEeECC-CCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe---cCCeEEEEEC-CcEE
Confidence 1111222334444321100 0000000 00011223345556777899999887665 322 2234555543 4579
Q ss_pred EecEEEEecCCCC
Q psy9583 532 TAKYIIIATGSKA 544 (866)
Q Consensus 532 ~~d~lViATGs~p 544 (866)
.+|+||+|||...
T Consensus 148 ~ad~VIlAtG~~s 160 (400)
T TIGR00275 148 EADKVILATGGLS 160 (400)
T ss_pred EcCEEEECCCCcc
Confidence 9999999999754
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.3e-06 Score=95.76 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=32.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||+||||||+|+++|..|++.|.+|+|||+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4899999999999999999999999999999984
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.7e-06 Score=92.46 Aligned_cols=33 Identities=33% Similarity=0.690 Sum_probs=31.6
Q ss_pred ccceeeecCCccHHHHHHHHHHC---CCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL---GFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~---g~~V~liek~ 422 (866)
++||+||||||||+++|..|++. |++|+|||+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 59999999999999999999998 9999999995
|
|
| >KOG2820|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.5e-06 Score=84.21 Aligned_cols=158 Identities=17% Similarity=0.191 Sum_probs=89.4
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcccee-ccccchhH-HHhhHHHHHHhhhhhhcC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV-GCIPSKAL-LQTSHSFENVKNSFFEYG 464 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~-g~~P~~~~-~~~~~~~~~~~~~~~~~g 464 (866)
|.+..|++|||+|.-|+++|++|+++|.+++++|+.+.|.++....|..... ...+...+ ....+.++.....-...|
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g 83 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG 83 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc
Confidence 5567999999999999999999999999999999987766665555543211 11110000 001111111111000001
Q ss_pred ccc---------cccc-cCHHHHHHH------------HHHHHHh--------------------------hhhhHHHHH
Q psy9583 465 INT---------QNVT-LNLQKMLER------------KNNIIKK--------------------------NNSGILFLF 496 (866)
Q Consensus 465 i~~---------~~~~-~~~~~~~~~------------~~~~~~~--------------------------~~~~~~~~~ 496 (866)
... .... ..+.++... ..++.++ -...++..+
T Consensus 84 ~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~ 163 (399)
T KOG2820|consen 84 VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKA 163 (399)
T ss_pred eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHH
Confidence 000 0000 001000000 0011111 112355677
Q ss_pred HhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 497 KKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 497 ~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
++.|+.++.|+.+. ...++.....+.|.+.+|..+.++++|+++|++-
T Consensus 164 ~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 164 RELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI 212 (399)
T ss_pred HHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence 88899999988877 3334456677788887888899999999999863
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.9e-06 Score=97.33 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=32.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
+.|||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35999999999999999999999999999999973
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.6e-06 Score=99.29 Aligned_cols=35 Identities=34% Similarity=0.600 Sum_probs=32.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~ 424 (866)
++||+||||||+|+++|..|++.|++|+||||.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 58999999999999999999999999999999743
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=1e-05 Score=91.54 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=32.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~ 424 (866)
++||+||||||+|+++|..|++.|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 48999999999999999999999999999999843
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.4e-06 Score=92.07 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=32.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 4899999999999999999999999999999973
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=7e-06 Score=92.73 Aligned_cols=34 Identities=35% Similarity=0.582 Sum_probs=32.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+||||||+|+++|..|++.|++|+|+||.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4999999999999999999999999999999974
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=2e-05 Score=92.68 Aligned_cols=44 Identities=30% Similarity=0.619 Sum_probs=39.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceec
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG 439 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g 439 (866)
++||+|||+|.+|++||..+++.|.+|+|||+. ..+||+|.+.+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~------~~~gG~~~~s~ 49 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ------DKVGGSTAMSG 49 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC------CCCCceeceec
Confidence 589999999999999999999999999999997 56788876654
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=8.2e-06 Score=95.94 Aligned_cols=36 Identities=42% Similarity=0.577 Sum_probs=33.5
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
|..++||||||+|.||++||..+++.|.+|+||||.
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~ 36 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQE 36 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 344699999999999999999999999999999998
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-05 Score=90.32 Aligned_cols=99 Identities=17% Similarity=0.286 Sum_probs=69.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..++++|.+|+|||+.+ .+ .| ..
T Consensus 174 ~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~------~i---------Lp--------------------------~~ 212 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGD------RI---------LP--------------------------GE 212 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC------CC---------CC--------------------------cC
Confidence 679999999999999999999999999999972 21 01 00
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCce--EEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKE--TITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~--~i~~d~lViATGs~p~~ 546 (866)
+.+.. ..+...+++.++.++.+..+.... .....+.+..+++. .+.+|++++|+|-+|+.
T Consensus 213 D~ei~--------------~~~~~~l~~~gv~i~~~~~v~~~~--~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~ 274 (454)
T COG1249 213 DPEIS--------------KELTKQLEKGGVKILLNTKVTAVE--KKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNT 274 (454)
T ss_pred CHHHH--------------HHHHHHHHhCCeEEEccceEEEEE--ecCCeEEEEEecCCCCEEEeeEEEEccCCccCC
Confidence 11111 123445666789999988877422 12222555544443 78999999999999884
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=91.39 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+||||||+|+++|..|++.|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 589999999999999999999999999999985
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.17 E-value=6e-06 Score=95.18 Aligned_cols=33 Identities=33% Similarity=0.608 Sum_probs=31.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+||||||||+++|..|++.|++|+|||+.
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 589999999999999999999999999999985
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.1e-05 Score=90.64 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=31.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+||||||+|+++|..|++.|++|+|||+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 489999999999999999999999999999986
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-06 Score=94.43 Aligned_cols=34 Identities=38% Similarity=0.771 Sum_probs=30.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~ 424 (866)
+||+|||||+||+++|..|++.|++|+|||+.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 7999999999999999999999999999999743
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.8e-06 Score=93.86 Aligned_cols=32 Identities=44% Similarity=0.683 Sum_probs=29.9
Q ss_pred ceeeecCCccHHHHHHHH--HHCCCeEEEEeccC
Q psy9583 392 DVIVIGAGPGGYVASIRL--AQLGFKTACIDEWK 423 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L--~~~g~~V~liek~~ 423 (866)
||+|||||+||+++|.+| ++.|.+|+|||+.+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~ 34 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKP 34 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 899999999999999999 77799999999873
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.2e-06 Score=92.31 Aligned_cols=33 Identities=30% Similarity=0.547 Sum_probs=31.2
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCC
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~ 424 (866)
||+|||||+||+++|..|++.|++|+|+||.+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence 799999999999999999999999999999853
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.6e-06 Score=69.42 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=33.6
Q ss_pred eecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcccee
Q psy9583 395 VIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV 438 (866)
Q Consensus 395 IIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~ 438 (866)
|||||++|+++|..|++.|++|+|+|+. +.+||.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~------~~~GG~~~~~ 38 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKN------DRLGGRARSF 38 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESS------SSSSGGGCEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecC------cccCcceeEE
Confidence 8999999999999999999999999998 7889877543
|
... |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.3e-06 Score=92.23 Aligned_cols=33 Identities=36% Similarity=0.589 Sum_probs=31.2
Q ss_pred ceeeecCCccHHHHHHHHHHCC-CeEEEEeccCC
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLG-FKTACIDEWKD 424 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~~ 424 (866)
||+||||||+|+++|..|++.| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence 7999999999999999999999 99999999743
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.4e-05 Score=83.91 Aligned_cols=98 Identities=19% Similarity=0.281 Sum_probs=79.0
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-------------------------------------cc----
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-------------------------------------TV---- 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-------------------------------------~~---- 609 (866)
..|+|||||+.|+-+|..+++.|.+|.++++++.+.+ .|
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d 83 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED 83 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence 4689999999999999999999999999987654311 00
Q ss_pred --------------------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEe
Q psy9583 610 --------------------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663 (866)
Q Consensus 610 --------------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~ 663 (866)
...+.+.+.+.+++.||+++++++|.+++.++....+... +|. ++.
T Consensus 84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~--~g~------~i~ 155 (408)
T COG2081 84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTS--SGE------TVK 155 (408)
T ss_pred HHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcC--CCC------EEE
Confidence 1345777788999999999999999999988766666554 665 899
Q ss_pred ccEEEEeeccccC
Q psy9583 664 FDKLLIAIGRIPN 676 (866)
Q Consensus 664 ~D~vi~a~G~~p~ 676 (866)
||.+|+|+|-...
T Consensus 156 ~d~lilAtGG~S~ 168 (408)
T COG2081 156 CDSLILATGGKSW 168 (408)
T ss_pred ccEEEEecCCcCC
Confidence 9999999995433
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.2e-05 Score=86.68 Aligned_cols=137 Identities=19% Similarity=0.273 Sum_probs=94.4
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-----------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT----------------------------------------- 608 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 608 (866)
.++|+|||+|+.|+-+|..|.+.|.+|+++++++.+...
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f~ 89 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGYR 89 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccCC
Confidence 589999999999999999999999999999886533110
Q ss_pred -------------------ccHHHHHHHHHHHHHcCCE--EEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEE
Q psy9583 609 -------------------VDEEIAKKAFHLLNKQGLN--IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKL 667 (866)
Q Consensus 609 -------------------~d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~v 667 (866)
-..++.+++++..+..|+. +.++++|++++..++.+.++....++. ..+..+|.|
T Consensus 90 dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~----~~~~~~d~V 165 (461)
T PLN02172 90 DFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGF----SKDEIFDAV 165 (461)
T ss_pred CCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCc----eEEEEcCEE
Confidence 0145677777888888988 889999999998777788877633222 235689999
Q ss_pred EEeec--cccCCCCCCccccCeeecCCCcEEeCCCCCC----CCCCEEEecccC
Q psy9583 668 LIAIG--RIPNTNNLNIDKIGLKVNENNFIIVNDNCET----NIPNIYAIGDVV 715 (866)
Q Consensus 668 i~a~G--~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~T----s~~~VyA~GD~a 715 (866)
|+|+| ..|+...+ . |++.- .|.+.--..++. ..++|-.+|-..
T Consensus 166 IvAtG~~~~P~~P~i--p--G~~~f-~G~~iHs~~yr~~~~~~gk~VvVVG~G~ 214 (461)
T PLN02172 166 VVCNGHYTEPNVAHI--P--GIKSW-PGKQIHSHNYRVPDPFKNEVVVVIGNFA 214 (461)
T ss_pred EEeccCCCCCcCCCC--C--CcccC-CceEEEecccCCccccCCCEEEEECCCc
Confidence 99999 46665432 1 22111 232222122222 357788888544
|
|
| >KOG0369|consensus | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.1e-06 Score=92.63 Aligned_cols=67 Identities=19% Similarity=0.416 Sum_probs=62.7
Q ss_pred CCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 11 LSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 11 ~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
+|..|. |+|+++.|++|+.|++||+|+.+..||+++-|.||.+|+++++++..|+.+..|+.++.+|
T Consensus 1109 igAPMp-G~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1109 IGAPMP-GTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTKVEGGDLIVELE 1175 (1176)
T ss_pred ccCCCC-CceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCcccccceEEEcc
Confidence 444444 9999999999999999999999999999999999999999999999999999999999886
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.4e-05 Score=87.48 Aligned_cols=180 Identities=15% Similarity=0.146 Sum_probs=101.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+|+|||||++|+.+|..+++.|.+|+++++.+ .+. |. .
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~------~~l---------~~--------------------------~ 196 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS------TIL---------PR--------------------------E 196 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC------ccC---------CC--------------------------C
Confidence 579999999999999999999999999999862 210 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
..++. ..+...+++.||+++.+..+. ++. ....+.+.. ++.++.+|.||+|+|..|... .
T Consensus 197 ~~~~~--------------~~~~~~l~~~GI~i~~~~~V~~i~~---~~~~v~v~~-~g~~i~~D~viva~G~~p~~~-~ 257 (438)
T PRK07251 197 EPSVA--------------ALAKQYMEEDGITFLLNAHTTEVKN---DGDQVLVVT-EDETYRFDALLYATGRKPNTE-P 257 (438)
T ss_pred CHHHH--------------HHHHHHHHHcCCEEEcCCEEEEEEe---cCCEEEEEE-CCeEEEcCEEEEeeCCCCCcc-c
Confidence 00000 112345677899999887655 322 223455543 356899999999999998742 1
Q ss_pred CcCC-------CceEecchhhhccccCCCeEEEECC---c----HHHHHHHHHHHh--cCC-cEEEEecCCcCCC-cccH
Q psy9583 550 VKFD-------ENLILSNKGALEMINVPKKLCIIGA---G----VIGLEIGSIWRR--LGS-EVTILEMSSNFLN-TVDE 611 (866)
Q Consensus 550 ~~~~-------~~~~~t~~~~~~~~~~~~~vvVIGg---G----~~glE~A~~l~~--~g~-~Vtli~~~~~~l~-~~d~ 611 (866)
.+.. .......++. +....+.|-.+|. + +++++-+..... .|. .+.+..+...... .+++
T Consensus 258 l~l~~~~~~~~~~g~i~vd~~--~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p 335 (438)
T PRK07251 258 LGLENTDIELTERGAIKVDDY--CQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTTMFITP 335 (438)
T ss_pred CCchhcCcEECCCCcEEECCC--cccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCCCCccccccCCCCEEEECCC
Confidence 1111 1111111111 1122466777875 4 555552222211 122 2222222111111 3466
Q ss_pred HHHHH--HHHHHHHcCCEEEeCc
Q psy9583 612 EIAKK--AFHLLNKQGLNIILNT 632 (866)
Q Consensus 612 ~~~~~--l~~~l~~~GV~i~~~~ 632 (866)
++... .++.+++.|+++....
T Consensus 336 ~ia~vGlte~~a~~~g~~~~~~~ 358 (438)
T PRK07251 336 PLSQVGLTEKEAKEAGLPYAVKE 358 (438)
T ss_pred ceEeeeCCHHHHHhcCCCeEEEE
Confidence 66555 6777888888766543
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1e-05 Score=89.67 Aligned_cols=32 Identities=38% Similarity=0.568 Sum_probs=30.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
|||+||||||||+++|..|++. ++|+|+|+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 8999999999999999999999 9999999974
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-05 Score=90.18 Aligned_cols=31 Identities=26% Similarity=0.522 Sum_probs=30.3
Q ss_pred ceeeecCCccHHHHHHHHHHCC-CeEEEEecc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLG-FKTACIDEW 422 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~ 422 (866)
||||||+|.||++||.++++.| .+|+|+||.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~ 32 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKM 32 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecC
Confidence 7999999999999999999999 999999998
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=98.13 E-value=6.5e-06 Score=92.91 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+||||||+|+++|..|++.|++|+|+|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 3899999999999999999999999999999984
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.9e-05 Score=88.61 Aligned_cols=181 Identities=19% Similarity=0.210 Sum_probs=103.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||++|+.+|..|++.|.+|+++++.+ .+. |. .
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~------~~l---------~~---------------------~----- 209 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD------RIL---------PG---------------------E----- 209 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC------CCC---------CC---------------------C-----
Confidence 679999999999999999999999999999862 110 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARSF 547 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~~ 547 (866)
..++ ...+...+++.||+++.++.+. ++. ..+.+.+...++ .++.+|.||+|+|..|...
T Consensus 210 ~~~~--------------~~~~~~~l~~~gi~i~~~~~v~~i~~---~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~ 272 (461)
T TIGR01350 210 DAEV--------------SKVVAKALKKKGVKILTNTKVTAVEK---NDDQVVYENKGGETETLTGEKVLVAVGRKPNTE 272 (461)
T ss_pred CHHH--------------HHHHHHHHHHcCCEEEeCCEEEEEEE---eCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence 0000 0112345677899999987665 322 224455554444 5799999999999998743
Q ss_pred C-CCc-----CCCceEecchhhhccccCCCeEEEECCcH-----------HHHHHHHHHHhcCCcEEEEecCCcCCC-cc
Q psy9583 548 P-GVK-----FDENLILSNKGALEMINVPKKLCIIGAGV-----------IGLEIGSIWRRLGSEVTILEMSSNFLN-TV 609 (866)
Q Consensus 548 p-~~~-----~~~~~~~t~~~~~~~~~~~~~vvVIGgG~-----------~glE~A~~l~~~g~~Vtli~~~~~~l~-~~ 609 (866)
. ... .+....+..++. +....+.|-++|... .|..+|..+...+.. .+........ .+
T Consensus 273 ~l~~~~~gl~~~~~g~i~vd~~--l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~~--~~~~~~~~~~~~~ 348 (461)
T TIGR01350 273 GLGLENLGVELDERGRIVVDEY--MRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEPA--PIDYDAVPSCIYT 348 (461)
T ss_pred CCCcHhhCceECCCCcEeeCCC--cccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCCC--CCCCCCCCeEEec
Confidence 1 111 111111111111 112246788888642 344555555543321 1111111111 23
Q ss_pred cHHHHHH--HHHHHHHcCCEEEeCce
Q psy9583 610 DEEIAKK--AFHLLNKQGLNIILNTK 633 (866)
Q Consensus 610 d~~~~~~--l~~~l~~~GV~i~~~~~ 633 (866)
++++... .++.+++.|+++.....
T Consensus 349 ~~~~a~vG~~~~~a~~~g~~~~~~~~ 374 (461)
T TIGR01350 349 DPEVASVGLTEEQAKEAGYDVKIGKF 374 (461)
T ss_pred CCceEEEeCCHHHHHhCCCCeEEEEE
Confidence 5555544 67778888888665443
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >cd06848 GCS_H Glycine cleavage H-protein | Back alignment and domain information |
|---|
Probab=98.12 E-value=5e-06 Score=72.98 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=45.2
Q ss_pred eEEEEE-EEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCE
Q psy9583 17 EATLLN-WHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSI 67 (866)
Q Consensus 17 ~g~i~~-w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~ 67 (866)
-|+|.. |++++|+.|++||++++||++|+..+|.||.+|+|.++..+..+.
T Consensus 28 lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~ 79 (96)
T cd06848 28 LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN 79 (96)
T ss_pred CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence 467777 677779999999999999999999999999999999998776654
|
Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue. |
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.5e-05 Score=84.51 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.++...+.+.+.++|+++++++.|+.++..++++.+... .+|+ . +++|+.||.|.|....
T Consensus 153 ~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~-~~g~----~-~~~ak~Vin~AGl~Ad 212 (429)
T COG0579 153 GELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNT-SNGE----E-TLEAKFVINAAGLYAD 212 (429)
T ss_pred HHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEe-cCCc----E-EEEeeEEEECCchhHH
Confidence 345677778888889999999999999998875333322 2554 1 2999999999997543
|
|
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.09 E-value=3.9e-05 Score=88.44 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=31.3
Q ss_pred ccceeeecCCccHHHHHHHHHHC--CCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~ 422 (866)
++||+|||||.+|+++|++|++. |.+|+|+|++
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 48999999999999999999998 8999999996
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=92.48 Aligned_cols=46 Identities=30% Similarity=0.538 Sum_probs=40.6
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceec
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG 439 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g 439 (866)
..++||+|||+|.+|++||..+++.|.+|+|||+. ..+||.|...+
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~------~~~gg~~~~~~ 51 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKA------STCGGATAWSG 51 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC------CCCCccccccC
Confidence 34699999999999999999999999999999997 56788876655
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.7e-06 Score=92.21 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=33.5
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~ 424 (866)
+.+||+||||||+|+++|..|++.|++|+|+|+.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 468999999999999999999999999999999843
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=91.33 Aligned_cols=36 Identities=22% Similarity=0.526 Sum_probs=33.3
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
..++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~ 39 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 346999999999999999999999999999999973
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.5e-05 Score=90.01 Aligned_cols=34 Identities=32% Similarity=0.645 Sum_probs=32.5
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.++||||||+|.||++||+.+++.|.+|+|+||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~ 43 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKS 43 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcC
Confidence 4689999999999999999999999999999997
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.2e-05 Score=90.02 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=34.6
Q ss_pred hcccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 386 ~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.|++.|||+|||||..|+++|+.|+++|++|+|||++
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 2 TMMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4566799999999999999999999999999999997
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.6e-05 Score=79.16 Aligned_cols=98 Identities=23% Similarity=0.348 Sum_probs=68.3
Q ss_pred EEECCcHHHHHHHHHHHhcCCc-EEEEecCCcCCC--------------c-----------------------------c
Q psy9583 574 CIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNFLN--------------T-----------------------------V 609 (866)
Q Consensus 574 vVIGgG~~glE~A~~l~~~g~~-Vtli~~~~~~l~--------------~-----------------------------~ 609 (866)
+|||+|+.|+-+|..|.+.|.+ ++++++++.+.. . .
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999998643310 0 0
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc--ccCCCC
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR--IPNTNN 679 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~--~p~~~~ 679 (866)
.+++.+++++..++.+++++++++|+++..+++++.+++. ++. ++.||.||+|+|. .|+...
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~--~~~------~~~a~~VVlAtG~~~~p~~p~ 144 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTR--DGR------TIRADRVVLATGHYSHPRIPD 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEET--TS-------EEEEEEEEE---SSCSB---S
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEE--ecc------eeeeeeEEEeeeccCCCCccc
Confidence 1345677888888999999999999999999888888775 554 7889999999996 555443
|
... |
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=98.06 E-value=9.1e-06 Score=91.51 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=31.9
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 899999999999999999999999999999984
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.7e-06 Score=93.76 Aligned_cols=33 Identities=30% Similarity=0.637 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+||||||+|+++|..|++.|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 489999999999999999999999999999997
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.3e-05 Score=85.73 Aligned_cols=33 Identities=39% Similarity=0.649 Sum_probs=31.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||+|||||+.|+++|++|++.|++|+|||++
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~ 35 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRF 35 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 499999999999999999999999999999997
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00021 Score=81.40 Aligned_cols=56 Identities=11% Similarity=0.210 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
..+...+.+.+++.|+++++++.|++++.+++.+....+ ++. ++.+|.||+|+|..
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t--~~~------~~~a~~VV~a~G~~ 256 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQT--GGG------VITADAYVVALGSY 256 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEe--CCc------EEeCCEEEECCCcc
Confidence 356677778888999999999999999877665432222 222 68899999999964
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.5e-06 Score=91.78 Aligned_cols=33 Identities=27% Similarity=0.525 Sum_probs=31.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
+||+|||||+||+++|..|++.|++|+|+|+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 379999999999999999999999999999984
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00019 Score=75.51 Aligned_cols=167 Identities=20% Similarity=0.252 Sum_probs=102.6
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-------------------------------------c-cH
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-------------------------------------V-DE 611 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------------~-d~ 611 (866)
.-.|+|||+|+.|+-+|..+++.|.+|.++++.+.+... . ..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 357999999999999999999999999999987654210 0 13
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEE-EEEee----CCCCccceeEEEeccEEEEeeccccCCCCCCccc-
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKE-NVL-INYSN----KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK- 684 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~-v~~~~----~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~- 684 (866)
++...+.+...+.|++++.++.+.++..+++ .+. +.+.. .++ ...+...+.++.||.|+|..........+.
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g-~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~~ 183 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAG-LHVDPLTIEAKAVVDATGHDAEVVSVLARKG 183 (257)
T ss_pred HHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccC-CCCCcEEEEcCEEEEEeCCCcHHHHHHHHHc
Confidence 4455566777788999999999999876544 332 22110 011 111235799999999999654332100010
Q ss_pred --cCeeecCCC--------cEEeCCCCCCCCCCEEEecccCC----CCC--cHHHH-HHHHHHHHHHHhCC
Q psy9583 685 --IGLKVNENN--------FIIVNDNCETNIPNIYAIGDVVR----GPM--LAHKA-EEEGIMVAEHISGQ 738 (866)
Q Consensus 685 --~gl~~~~~G--------~i~Vd~~l~Ts~~~VyA~GD~a~----~~~--~~~~A-~~~g~~aa~~i~g~ 738 (866)
.+..+...+ ...|+.+-+ -+||+|++|=++. .|+ -...+ ..+|+.||+-|+.+
T Consensus 184 ~~~~~~~~g~~~~~~~~~e~~v~~~t~~-~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~ 253 (257)
T PRK04176 184 PELGIEVPGEKSMWAERGEKLVVENTGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEK 253 (257)
T ss_pred CCcccccCCccccccCchHHHHHhcCCe-EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHH
Confidence 111111111 122222222 3799999998874 232 23333 46788888887643
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.6e-05 Score=86.72 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=32.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4899999999999999999999999999999974
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.8e-05 Score=88.55 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=34.4
Q ss_pred hcccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 386 ~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+|..++||+|||||+.|+++|+.|+++|++|+|+|++
T Consensus 2 ~~~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 2 AEPETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 3556799999999999999999999999999999997
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.1e-05 Score=82.77 Aligned_cols=32 Identities=28% Similarity=0.518 Sum_probs=30.9
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+||+|||||.+|+++|++|++.|++|+|+|+.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~ 32 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERS 32 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 58999999999999999999999999999997
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00014 Score=76.18 Aligned_cols=167 Identities=22% Similarity=0.206 Sum_probs=103.8
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc--------------------------------------ccH
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT--------------------------------------VDE 611 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~--------------------------------------~d~ 611 (866)
.-+|+|||+|+.|+-+|..+++.|.+|.++++.+.+... ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 457999999999999999999999999999997654200 113
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCC--eEE-EEEeeC----CCCccceeEEEeccEEEEeeccccCCCCCCccc
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKE--NVL-INYSNK----STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~~-v~~~~~----~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~ 684 (866)
++.+.+.+...+.|++++.++.++++..+++ .+. +.+... .|. ..+...+.++.||.|+|.......+..+.
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~-~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGL-HVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCC-CCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 4455666677788999999999999887655 232 222110 110 11245899999999999765432211222
Q ss_pred cCeeecC-----CCcEEeCC-------CCCCCCCCEEEecccCC----CCC--cHHHH-HHHHHHHHHHHhC
Q psy9583 685 IGLKVNE-----NNFIIVND-------NCETNIPNIYAIGDVVR----GPM--LAHKA-EEEGIMVAEHISG 737 (866)
Q Consensus 685 ~gl~~~~-----~G~i~Vd~-------~l~Ts~~~VyA~GD~a~----~~~--~~~~A-~~~g~~aa~~i~g 737 (866)
.++.... .+..+.+. +-+--+||+|++|=.+. .|+ -...+ ..+|+.||+.++.
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~ 251 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILE 251 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHH
Confidence 2221111 11122221 11124799999998774 232 23334 3678888887764
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.1e-05 Score=94.99 Aligned_cols=34 Identities=32% Similarity=0.723 Sum_probs=32.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 5899999999999999999999999999999984
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.8e-05 Score=87.63 Aligned_cols=100 Identities=12% Similarity=0.165 Sum_probs=80.8
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecC--CcC--------C----CcccHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS--SNF--------L----NTVDEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~--~~~--------l----~~~d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
..+++|||||+.|+.+|..+++.|.+|+++... ..+ + ....+++.+.+.+.+++.|++++.++++.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~~~~V~ 290 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMNLQRAS 290 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEcCCEEE
Confidence 458999999999999999999999999999653 111 0 12356788889999999999999999999
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
.+...++...+.+. ++. .+.+|.+++|+|.+|..
T Consensus 291 ~I~~~~~~~~V~~~--~g~------~i~a~~vViAtG~~~r~ 324 (517)
T PRK15317 291 KLEPAAGLIEVELA--NGA------VLKAKTVILATGARWRN 324 (517)
T ss_pred EEEecCCeEEEEEC--CCC------EEEcCEEEECCCCCcCC
Confidence 99887666666553 554 78999999999998754
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.7e-05 Score=89.45 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=31.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 379999999999999999999999999999973
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00016 Score=83.18 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHH----cC--CEEEeCceEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 611 EEIAKKAFHLLNK----QG--LNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 611 ~~~~~~l~~~l~~----~G--V~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
..+...+.+.+++ .| +++++++.|++++..++ .+.+.. .+| ++.+|.||+|+|...
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T--~~G-------~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHT--NRG-------EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEE--CCC-------EEEeCEEEECcChhH
Confidence 3566777778887 67 88999999999998744 344443 233 689999999999543
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00027 Score=80.27 Aligned_cols=34 Identities=29% Similarity=0.574 Sum_probs=31.3
Q ss_pred cccceeeecCCccHHHHHHHHHHC-CC-eEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQL-GF-KTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~-g~-~V~liek~ 422 (866)
+++||+|||||..|+++|++|++. |. +|+|||+.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 469999999999999999999995 85 89999996
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.4e-05 Score=86.76 Aligned_cols=101 Identities=13% Similarity=0.206 Sum_probs=80.8
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecC--CcCC------------CcccHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS--SNFL------------NTVDEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~--~~~l------------~~~d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
..+|+|||||+.|+.+|..+++.|.+|+++... ..+. ....+++.+.+.+.+++.|++++.+++|+
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~~~~V~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEcCCEEE
Confidence 578999999999999999999999999998641 1111 02356778888899999999999999999
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~ 678 (866)
++..+++.+.+.+. +|. .+.+|.+++|+|..|...
T Consensus 292 ~I~~~~~~~~v~~~--~g~------~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 292 KIETEDGLIVVTLE--SGE------VLKAKSVIVATGARWRKL 326 (515)
T ss_pred EEEecCCeEEEEEC--CCC------EEEeCEEEECCCCCcCCC
Confidence 99876666666553 554 799999999999987543
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.5e-06 Score=92.93 Aligned_cols=34 Identities=41% Similarity=0.592 Sum_probs=31.6
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..|||+|||||.||+.||..+++.|.+++|+.-+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 3599999999999999999999999999999765
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00012 Score=85.52 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=31.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||||||+| ||++||.++++.|.+|+||||.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~ 38 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEAT 38 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEEEecC
Confidence 5899999999 9999999999999999999997
|
|
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00044 Score=73.16 Aligned_cols=146 Identities=21% Similarity=0.261 Sum_probs=89.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||..||..+.--.++|.+|+++|-. +.+||..
T Consensus 212 k~~~viG~G~IGLE~gsV~~rLGseVT~VEf~------~~i~~~m----------------------------------- 250 (506)
T KOG1335|consen 212 KKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFL------DQIGGVM----------------------------------- 250 (506)
T ss_pred ceEEEEcCceeeeehhhHHHhcCCeEEEEEeh------hhhcccc-----------------------------------
Confidence 67999999999999999999999999999975 4555421
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCc-ccEEEEEc-CCc--eEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNN-FHEIQIIN-KTK--ETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~-~~~v~v~~-~~g--~~i~~d~lViATGs~p~~ 546 (866)
+.+..+ .++..+.+.|+++..++.+.....+.+ .-.+++.. .++ +++++|.|++++|-+|+.
T Consensus 251 D~Eisk--------------~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t 316 (506)
T KOG1335|consen 251 DGEISK--------------AFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT 316 (506)
T ss_pred CHHHHH--------------HHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccc
Confidence 011111 234467789999999999884332222 22344433 222 789999999999999984
Q ss_pred CCCCcCCCceEecchhhhcc------ccCCCeEEEECCcHHHHHHHHHHHhcC
Q psy9583 547 FPGVKFDENLILSNKGALEM------INVPKKLCIIGAGVIGLEIGSIWRRLG 593 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~------~~~~~~vvVIGgG~~glE~A~~l~~~g 593 (866)
.+++++...+.. +...+. ...-.++-.||--..|--+|.-..+.|
T Consensus 317 -~GLgle~iGi~~-D~r~rv~v~~~f~t~vP~i~~IGDv~~gpMLAhkAeeeg 367 (506)
T KOG1335|consen 317 -EGLGLEKIGIEL-DKRGRVIVNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEG 367 (506)
T ss_pred -cCCChhhccccc-ccccceeccccccccCCceEEecccCCcchhhhhhhhhc
Confidence 344433322211 111111 011235666775555555554444444
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.6e-05 Score=89.99 Aligned_cols=35 Identities=34% Similarity=0.563 Sum_probs=31.4
Q ss_pred cccceeeecCCccHHHHHHHHHHCC----CeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLG----FKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g----~~V~liek~~ 423 (866)
..+||+||||||+|+++|..|++.| ++|+|+|+.+
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 3589999999999999999999987 4799999973
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.91 E-value=6.3e-05 Score=86.46 Aligned_cols=104 Identities=22% Similarity=0.384 Sum_probs=75.0
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCCcC------CCcc-----c--HHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNF------LNTV-----D--EEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~~~------l~~~-----d--~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
++++|||||+.|+.+|..|++++. +|+++++.+.+ ++.+ + .++.....+.+++.|+++++++.|+
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~ 80 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHEVV 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEecCEEE
Confidence 479999999999999999998864 89999998764 1111 1 1233344567888999999999999
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
++..++..+.+.-. .++. ...+.+|.+|+|||.+|+...
T Consensus 81 ~id~~~~~v~~~~~-~~~~----~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 81 KVDAKNKTITVKNL-KTGS----IFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEECCCCEEEEEEC-CCCC----EEEecCCEEEECCCCCCCCCC
Confidence 99877665554321 1233 123349999999999987654
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00012 Score=86.32 Aligned_cols=34 Identities=21% Similarity=0.500 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||+||||||+|+++|..|+++|++|+|||+.+
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5899999999999999999999999999999874
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.90 E-value=4e-05 Score=85.84 Aligned_cols=32 Identities=25% Similarity=0.531 Sum_probs=31.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 79999999999999999999999999999986
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.3e-05 Score=83.73 Aligned_cols=61 Identities=10% Similarity=0.151 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
..++.+.+.+.++..|..+++++.|++|..++++....+...+|+ ++.++.||....+.|.
T Consensus 231 ~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge------~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 231 LGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGE------VAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCc------EEECCEEEECcccccc
Confidence 457888888888999999999999999987754433333334665 7899999998777765
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00025 Score=83.81 Aligned_cols=44 Identities=39% Similarity=0.559 Sum_probs=39.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceec
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG 439 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g 439 (866)
++||+|||+|++|++||..+++.|.+|+||||. ..+||.+...+
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~------~~~gg~~~~s~ 59 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLLVERT------EYVGGTTATSA 59 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC------CCCCCcccccC
Confidence 589999999999999999999999999999997 56788775554
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.2e-05 Score=84.22 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=65.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc--------------------------------------c----
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT--------------------------------------V---- 609 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~--------------------------------------~---- 609 (866)
+|+|||||+.|+-+|..+++.|.+|.++++++++..- +
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999987643110 0
Q ss_pred --------------------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCe-EEEEEeeCCCCccceeEEE
Q psy9583 610 --------------------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITS 662 (866)
Q Consensus 610 --------------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~ 662 (866)
..++.+.+.+.+++.||+++++++|.+++.++++ +.+.+. ++. .+
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~--~~~------~~ 153 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTK--NGG------EY 153 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEET--TTE------EE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeecc--Ccc------cc
Confidence 0445677778889999999999999999987776 566552 333 89
Q ss_pred eccEEEEeeccccC
Q psy9583 663 IFDKLLIAIGRIPN 676 (866)
Q Consensus 663 ~~D~vi~a~G~~p~ 676 (866)
.+|.||+|+|-...
T Consensus 154 ~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 154 EADAVILATGGKSY 167 (409)
T ss_dssp EESEEEE----SSS
T ss_pred cCCEEEEecCCCCc
Confidence 99999999997654
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=82.77 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=32.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.++||+|||||.+|+++|++|++.|.+|+++|++.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~ 37 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGE 37 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCc
Confidence 35999999999999999999999999999999973
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.2e-05 Score=90.28 Aligned_cols=34 Identities=38% Similarity=0.593 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+||||||+|+++|..|++.|++|+|||+.+
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 5899999999999999999999999999999973
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00016 Score=81.03 Aligned_cols=101 Identities=23% Similarity=0.369 Sum_probs=79.5
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC------------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN------------------------------------------ 607 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 607 (866)
.++|+|||||+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~ 83 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT 83 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence 57899999999999999999999999999987653100
Q ss_pred ---cc-----------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEE
Q psy9583 608 ---TV-----------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKL 667 (866)
Q Consensus 608 ---~~-----------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~v 667 (866)
.+ .+++.+.+.+.+.+.|+++++++++++++.+++.+.+.+. +|. ++.+|.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~--~g~------~~~ad~v 155 (375)
T PRK06847 84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFS--DGT------TGRYDLV 155 (375)
T ss_pred EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEc--CCC------EEEcCEE
Confidence 00 1344566667777789999999999999887777766664 565 7899999
Q ss_pred EEeeccccCCC
Q psy9583 668 LIAIGRIPNTN 678 (866)
Q Consensus 668 i~a~G~~p~~~ 678 (866)
|.|.|..+...
T Consensus 156 I~AdG~~s~~r 166 (375)
T PRK06847 156 VGADGLYSKVR 166 (375)
T ss_pred EECcCCCcchh
Confidence 99999877553
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.9e-05 Score=79.64 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=34.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
.+|+|||+|+||++||..|++.|.+|+||||+ ..+||..
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg------~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKG------RGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcC------CCcccch
Confidence 46999999999999999999999999999998 4566654
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00037 Score=81.86 Aligned_cols=61 Identities=8% Similarity=0.057 Sum_probs=43.6
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEee-CCCCccceeEEEeccEEEEeeccc
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSN-KSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
+..+...+.....++|+++++++.|+++..+++.+. +.+.+ .+++ ...+.+|.||.|+|.-
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~----~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGE----TQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCc----EEEEECCEEEECCChh
Confidence 344555666777889999999999999987766543 44432 1222 2479999999999964
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.8e-05 Score=88.98 Aligned_cols=33 Identities=30% Similarity=0.593 Sum_probs=30.9
Q ss_pred cceeeecCCccHHHHHHHHHH----CCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQ----LGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~----~g~~V~liek~~ 423 (866)
|||+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 699999999999999999998 799999999953
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00015 Score=83.77 Aligned_cols=99 Identities=17% Similarity=0.245 Sum_probs=68.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..+++.|.+|+||++.+ .+...
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~------~~l~~----------------------------------- 213 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD------RLLSF----------------------------------- 213 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC------CcCCc-----------------------------------
Confidence 3689999999999999999999999999999862 21100
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.+.++ ...+...+++.|++++.+..+. +.. ....+.+...++.++.+|.|++|+|.+|..
T Consensus 214 ~d~~~--------------~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 214 LDDEI--------------SDALSYHLRDSGVTIRHNEEVEKVEG---GDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred CCHHH--------------HHHHHHHHHHcCCEEEECCEEEEEEE---eCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 00000 1112344667899999887665 321 123445544556789999999999998874
|
|
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.8e-05 Score=95.98 Aligned_cols=41 Identities=32% Similarity=0.441 Sum_probs=36.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
.++||||||+|.||++||.++++.|.+|+|+||. ...||.+
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~------~~~GG~s 448 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKE------AKLGGNS 448 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEcc------CCCCCch
Confidence 3589999999999999999999999999999998 4566654
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.5e-05 Score=84.96 Aligned_cols=31 Identities=29% Similarity=0.585 Sum_probs=29.8
Q ss_pred ceeeecCCccHHHHHHHHHHC--CCeEEEEecc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQL--GFKTACIDEW 422 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~ 422 (866)
||+|||||+||+++|.+|++. |++|+++|+.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~ 33 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 799999999999999999987 9999999997
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >KOG2415|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.9e-05 Score=79.64 Aligned_cols=47 Identities=34% Similarity=0.658 Sum_probs=38.7
Q ss_pred cccceeeecCCccHHHHHHHHHHC------CCeEEEEeccCCCcccccCCCccceeccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQL------GFKTACIDEWKDNEENFALGGTCTNVGCI 441 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~------g~~V~liek~~~~~~~~~~GG~~~~~g~~ 441 (866)
..+||+|||||||||+||++|+++ ..+|.++||. ..+||-.+.-.++
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKa------a~~GghtlSGavi 127 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKA------AEVGGHTLSGAVI 127 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeec------cccCCceecceee
Confidence 459999999999999999999876 4689999998 6788766554443
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00019 Score=83.06 Aligned_cols=179 Identities=17% Similarity=0.178 Sum_probs=98.0
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+|+|||+|+.|+.+|..|++.|.+|++|++.+ .+.. +.
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~------~~l~------~~----------------------------- 222 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALP------AFLA------AA----------------------------- 222 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC------ccCC------cC-----------------------------
Confidence 579999999999999999999999999999862 1100 00
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEE--cCCc--eEEEecEEEEecCCCCc
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQII--NKTK--ETITAKYIIIATGSKAR 545 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~--~~~g--~~i~~d~lViATGs~p~ 545 (866)
..++ ...+...+++.||+++.++.+. +.. ....+.+. ..++ ..+.+|.|++|+|..|.
T Consensus 223 d~~~--------------~~~~~~~l~~~gi~i~~~~~v~~i~~---~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 223 DEQV--------------AKEAAKAFTKQGLDIHLGVKIGEIKT---GGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred CHHH--------------HHHHHHHHHHcCcEEEeCcEEEEEEE---cCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 0000 0112334667899999887655 322 11233333 2223 57999999999999987
Q ss_pred CCC-C-----CcCCCceEecchhhhccccCCCeEEEECCcHH-----------HHHHHHHHHhcCCcEEEEecCCcCCCc
Q psy9583 546 SFP-G-----VKFDENLILSNKGALEMINVPKKLCIIGAGVI-----------GLEIGSIWRRLGSEVTILEMSSNFLNT 608 (866)
Q Consensus 546 ~~p-~-----~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~-----------glE~A~~l~~~g~~Vtli~~~~~~l~~ 608 (866)
... . ...+....+..++.. ....+.|-.+|.... |..+|..+.....++. ...-+..+ .
T Consensus 286 ~~~l~~~~~g~~~~~~G~i~vd~~~--~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~~~~~-~~~~p~~~-~ 361 (475)
T PRK06327 286 TDGLGLEAVGLKLDERGFIPVDDHC--RTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQKGHID-YNTIPWVI-Y 361 (475)
T ss_pred CCCCCcHhhCceeCCCCeEeECCCC--ccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCCCCCC-CCCCCeEE-e
Confidence 431 1 111111112122111 122456777775322 4444555443222110 00111111 2
Q ss_pred ccHHHHH--HHHHHHHHcCCEEEeC
Q psy9583 609 VDEEIAK--KAFHLLNKQGLNIILN 631 (866)
Q Consensus 609 ~d~~~~~--~l~~~l~~~GV~i~~~ 631 (866)
.++++.. ..++.+++.|+++...
T Consensus 362 ~~pe~a~vGlte~~a~~~g~~~~~~ 386 (475)
T PRK06327 362 TSPEIAWVGKTEQQLKAEGVEYKAG 386 (475)
T ss_pred CCcceEEEeCCHHHHHHcCCCEEEE
Confidence 3556554 5567777888876644
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.2e-05 Score=87.84 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=31.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 689999999999999999999999999999974
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00021 Score=82.04 Aligned_cols=185 Identities=10% Similarity=0.072 Sum_probs=101.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCcc-------ccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCe
Q psy9583 283 TMSIADIEKKINEFINKAQDNKLLPE-------EMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNN 355 (866)
Q Consensus 283 ~~~~~~i~~~~~~~~~~~~~~~l~~~-------~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~ 355 (866)
+.++.++.+..++.+++.+.+..... ++-.|+.++.+-...-+.... .+ .....|||.|+-...|.+.+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~-~~-~~d~lViATGs~p~~p~i~g~~ 149 (451)
T PRK07846 72 GVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGE-EI-TADQVVIAAGSRPVIPPVIADS 149 (451)
T ss_pred cCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCC-EE-EeCEEEEcCCCCCCCCCCCCcC
Confidence 35888999998888888766422111 111133332221111000000 12 3466789999765444332211
Q ss_pred eEeeeeeeeeecccccccccchhhhhhhhhhcccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcc
Q psy9583 356 VVIRPINYFALSYDHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 356 ~~ir~~~~~~l~~dhr~~dg~~a~~~~~~~~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
. ..+.+..+...... ...+++|||||+.|+.+|..|++.|.+|+|+++.+ .+.
T Consensus 150 ----~---------~~~~~~~~~~~l~~-----~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~------~ll--- 202 (451)
T PRK07846 150 ----G---------VRYHTSDTIMRLPE-----LPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG------RLL--- 202 (451)
T ss_pred ----C---------ccEEchHHHhhhhh-----cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC------ccc---
Confidence 0 01111112111111 12679999999999999999999999999999862 110
Q ss_pred ceeccccchhHHHhhHHHHHHhhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccc
Q psy9583 436 TNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKI 514 (866)
Q Consensus 436 ~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~ 514 (866)
|. ...++.. .+..++ +.+++++.+..+. ++.
T Consensus 203 ------~~--------------------------~d~~~~~--------------~l~~l~-~~~v~i~~~~~v~~i~~- 234 (451)
T PRK07846 203 ------RH--------------------------LDDDISE--------------RFTELA-SKRWDVRLGRNVVGVSQ- 234 (451)
T ss_pred ------cc--------------------------cCHHHHH--------------HHHHHH-hcCeEEEeCCEEEEEEE-
Confidence 00 0000000 011122 3578888876655 321
Q ss_pred cCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 515 QNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 515 ~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..+.+.+...++.++.+|.|++|+|..|..
T Consensus 235 --~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 264 (451)
T PRK07846 235 --DGSGVTLRLDDGSTVEADVLLVATGRVPNG 264 (451)
T ss_pred --cCCEEEEEECCCcEeecCEEEEEECCccCc
Confidence 223455555567789999999999999874
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00031 Score=80.32 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
..+.+.|.+...+.||+++.++ |+.+..++++....+...+|. ++.+|.+|=|+|++...
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~------~i~ad~~IDASG~~s~L 213 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGR------TIEADFFIDASGRRSLL 213 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSE------EEEESEEEE-SGGG-CC
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCC------EEEEeEEEECCCccchh
Confidence 4556777788888999999875 777766655544444444665 89999999999997643
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.2e-05 Score=68.79 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC
Q psy9583 19 TLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS 66 (866)
Q Consensus 19 ~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~ 66 (866)
.-+++ .++|+.|++||++++||++|+..+|.||.+|+|.+++-+..+
T Consensus 33 ~~v~l-p~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~ 79 (110)
T TIGR03077 33 LHIDL-PSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED 79 (110)
T ss_pred EEEEC-CCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence 34455 377999999999999999999999999999999998655444
|
The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown. |
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.3e-05 Score=87.91 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=32.4
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+||+|||||++|+++|..|++.|++|+|+||.
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 4689999999999999999999999999999997
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.6e-05 Score=90.01 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=31.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+|||||.+|+++|++|+++|.+|+|+|+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~ 292 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEAD 292 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence 379999999999999999999999999999997
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00046 Score=79.74 Aligned_cols=96 Identities=19% Similarity=0.256 Sum_probs=66.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||+|+.|+..|..|++.|.+|+++++.+ .+ |. .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~------~l----------~~--------------------------~ 216 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSR------VL----------SQ--------------------------E 216 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCC------CC----------CC--------------------------C
Confidence 579999999999999999999999999998641 11 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..++ ...+...+++.||+++.+..+. +.. ....+.+.++++ ++.+|.||+|+|..|..
T Consensus 217 ~~~~--------------~~~l~~~l~~~GI~v~~~~~v~~i~~---~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 217 DPAV--------------GEAIEAAFRREGIEVLKQTQASEVDY---NGREFILETNAG-TLRAEQLLVATGRTPNT 275 (468)
T ss_pred CHHH--------------HHHHHHHHHhCCCEEEeCCEEEEEEE---cCCEEEEEECCC-EEEeCEEEEccCCCCCc
Confidence 0000 1113445777899999886655 322 223444544443 69999999999999874
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00049 Score=79.28 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEEEEEee-CCCCccceeEEEeccEEEEeecccc
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKE-NVLINYSN-KSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+..+...+.+.+++.|+++++++.|++++.+++ .+.+.+.. .+|. ..++.+|.||+|+|...
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~----~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGG----KRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCc----eEEEECCEEEECCCcch
Confidence 356677888888889999999999999987543 45554432 1221 23689999999999643
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00013 Score=61.78 Aligned_cols=31 Identities=35% Similarity=0.421 Sum_probs=29.8
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+++|||||+.|+.+|..|++.|.+|+||++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEecc
Confidence 4899999999999999999999999999997
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.9e-05 Score=85.24 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=29.9
Q ss_pred ceeeecCCccHHHHHHHHHHCC-CeEEEEeccC
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLG-FKTACIDEWK 423 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~ 423 (866)
+|+|||||+||+++|..|++.| .+|+|+||.+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 6999999999999999999998 5999999973
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00052 Score=78.67 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=42.3
Q ss_pred HHHHHHHHHHH-HcCCEEEeCceEEEEEEc-CCeEEEEEee-CCCCccceeEEEeccEEEEeecccc
Q psy9583 612 EIAKKAFHLLN-KQGLNIILNTKIHDIKIN-KENVLINYSN-KSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 612 ~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~-~~~~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
.+.+.+.+.+. ..|+++++++.|+.++.. ++.+.+.+.. .++. ..++.+|.||+|.|...
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~----~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGE----KREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCc----eEEEEcCEEEECCCcch
Confidence 44566666665 459999999999999876 5566665431 2221 12589999999999765
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00015 Score=84.01 Aligned_cols=101 Identities=15% Similarity=0.308 Sum_probs=66.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||++|+.+|..|++.|.+|+||++.+ .+. |. .
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~------~il---------~~--------------------------~ 219 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD------RIL---------PT--------------------------E 219 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC------ccC---------Cc--------------------------C
Confidence 579999999999999999999999999999862 110 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~ 546 (866)
..++ ...+...+++.||+++.++.+..-..........+...++ .++.+|.||+|+|..|..
T Consensus 220 ~~~~--------------~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 220 DAEL--------------SKEVARLLKKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred CHHH--------------HHHHHHHHHhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 0000 1112345677899999987665211000112222222334 579999999999999874
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00018 Score=82.33 Aligned_cols=104 Identities=19% Similarity=0.287 Sum_probs=72.2
Q ss_pred CeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCC--C-cccHHH-------HHHH----HHHHHHcCCEEEeCceE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFL--N-TVDEEI-------AKKA----FHLLNKQGLNIILNTKI 634 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l--~-~~d~~~-------~~~l----~~~l~~~GV~i~~~~~v 634 (866)
++|+|||||+.|+.+|..|+++ +.+|+++++.+.+. + .++.-. ...+ ....++.|++++.+++|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~V 81 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYHEV 81 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcccccCCcchhhcCccCCHHHcccCCHHHHHHhCCCEEEeCCEE
Confidence 4799999999999999999887 57899999987532 1 111110 0111 22335679999999999
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
++|..++..+.+.-.. ++. ..++.+|.+|+|||.+|+...
T Consensus 82 ~~Id~~~~~v~~~~~~-~~~----~~~~~yd~lviAtGs~~~~~~ 121 (438)
T PRK13512 82 IAINDERQTVTVLNRK-TNE----QFEESYDKLILSPGASANSLG 121 (438)
T ss_pred EEEECCCCEEEEEECC-CCc----EEeeecCEEEECCCCCCCCCC
Confidence 9998777655443221 122 235789999999999997544
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0002 Score=80.59 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=74.2
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc------ccHHHHHHHHH------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------VDEEIAKKAFH------------------------ 619 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------~d~~~~~~l~~------------------------ 619 (866)
..+|+|||||+.|+.+|..|++.|.+|+++++.+..... +.+...+.+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 578999999999999999999999999999998754321 23332222221
Q ss_pred -------------------HHHH--cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 620 -------------------LLNK--QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 620 -------------------~l~~--~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
.|.+ .++.+++++++++++.+++++.+.+. +|. ++.+|.||.|-|.....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g~------~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFA--DGR------RETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEEC--CCC------EEEeCEEEECCCCCchH
Confidence 1111 13568899999999988777777775 665 78999999999976654
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.9e-05 Score=89.77 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCe-EEEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
-..+.+.+.+.+++.|++|+++++|++|..+++. +.+... +|. .+++|.||.+...
T Consensus 223 ~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~--~g~------~~~ad~vv~~~~~ 279 (487)
T COG1233 223 MGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTS--DGE------NIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEecc--ccc------eeccceeEecCch
Confidence 3567889999999999999999999999987764 333332 443 7899999998876
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00018 Score=81.16 Aligned_cols=98 Identities=13% Similarity=0.247 Sum_probs=71.5
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCCcCC---CcccHHHH---------HHHHHHHHHcCCEEEeCceEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNFL---NTVDEEIA---------KKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~~~l---~~~d~~~~---------~~l~~~l~~~GV~i~~~~~v~ 635 (866)
.++++|||||+.|+.+|..|++.|. +|+++.+.+.+. +.+...+. ..-.+.+.+.||+++.++.|.
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~V~ 82 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcCCEEE
Confidence 4689999999999999999999876 799998765431 12222110 011345677899999999999
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
.+..+... +.+. +|. .+.+|.+|+|||.+|..
T Consensus 83 ~id~~~~~--v~~~--~g~------~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 83 TLGRDTRE--LVLT--NGE------SWHWDQLFIATGAAARP 114 (396)
T ss_pred EEECCCCE--EEEC--CCC------EEEcCEEEEccCCCCCC
Confidence 98765433 3333 555 79999999999999864
|
|
| >KOG0368|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=4.5e-05 Score=91.35 Aligned_cols=65 Identities=28% Similarity=0.434 Sum_probs=61.6
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
.-|++++|+|+.|+.|..||+-+|||.|||.+.+.|+.+|+| +...++|+.+.+|++||.++-+.
T Consensus 692 s~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~i~aG~vlakL~lDd 756 (2196)
T KOG0368|consen 692 SPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDAIEAGSVLAKLTLDD 756 (2196)
T ss_pred CCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCccCccceeEEeecCC
Confidence 569999999999999999999999999999999999999999 58899999999999999998665
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00035 Score=75.26 Aligned_cols=97 Identities=19% Similarity=0.221 Sum_probs=76.4
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC--------------------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-------------------------------------------- 607 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-------------------------------------------- 607 (866)
.|+|||||+.|+-+|..|++.|.+|+++++.+....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 489999999999999999999999999998754210
Q ss_pred -----cc-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 608 -----TV-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 608 -----~~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
.+ ...+.+.+.+.+++.|++++.+++++++..+++.+.+.++. ++ .++.+|.||.|+|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~-~~------~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRG-GE------GTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcC-cc------EEEEeCEEEECCCcch
Confidence 01 13455667777888899999999999998877776666542 22 3789999999999764
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=81.12 Aligned_cols=104 Identities=24% Similarity=0.274 Sum_probs=71.8
Q ss_pred cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc---------ccHHHHHHHHHHHHHcCCEEEeCceEEEEE
Q psy9583 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT---------VDEEIAKKAFHLLNKQGLNIILNTKIHDIK 638 (866)
Q Consensus 568 ~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~---------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 638 (866)
..+++++|||+|+.|+++|..|++.|.+|+++++.+.+... ++.+......+.+.+.|++++.++.+..+.
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~~~ 95 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHTRTKVCCGE 95 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEecCcEEeecc
Confidence 45789999999999999999999999999999998776421 233444455566777899999998886553
Q ss_pred E----cCCeEEEEEeeCCCCccceeEEEeccEEEEeecc-ccCC
Q psy9583 639 I----NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR-IPNT 677 (866)
Q Consensus 639 ~----~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~-~p~~ 677 (866)
. ..+....... .. +...+.+|.+|+|+|. .|..
T Consensus 96 ~~~~~~~~~~~~~~~--~~----~~~~~~~d~lviAtGs~~~~~ 133 (352)
T PRK12770 96 PLHEEEGDEFVERIV--SL----EELVKKYDAVLIATGTWKSRK 133 (352)
T ss_pred ccccccccccccccC--CH----HHHHhhCCEEEEEeCCCCCCc
Confidence 2 1111111110 10 0114689999999998 4543
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=3.1e-05 Score=89.96 Aligned_cols=44 Identities=30% Similarity=0.572 Sum_probs=39.8
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
|++++||+|||||++||+||..|++.|++|+|+|+. +.+||.|.
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~------~~~GG~~~ 44 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEAD------PVVGGISR 44 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecC------CCCCceee
Confidence 445689999999999999999999999999999998 78899774
|
|
| >PRK00624 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=7.8e-05 Score=66.77 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=37.5
Q ss_pred EEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEee
Q psy9583 19 TLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62 (866)
Q Consensus 19 ~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~ 62 (866)
.-++|. ++|+.|++||++++||++|+..+|.||.+|+|.++.-
T Consensus 35 ~~v~lp-~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~ 77 (114)
T PRK00624 35 LHIDLP-SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNT 77 (114)
T ss_pred EEEECC-CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHH
Confidence 344553 6799999999999999999999999999999998853
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00017 Score=80.91 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=68.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+++++.+ .+... ..|
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~------~~l~~-----~~~--------------------------- 182 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA------SLLAS-----LMP--------------------------- 182 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC------cccch-----hCC---------------------------
Confidence 3679999999999999999999999999999862 11100 000
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
. .....+...+++.||+++.+..+. +.. ....+.+...++.++.+|.||+|+|..|.
T Consensus 183 --~--------------~~~~~l~~~l~~~gV~i~~~~~v~~i~~---~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 183 --P--------------EVSSRLQHRLTEMGVHLLLKSQLQGLEK---TDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred --H--------------HHHHHHHHHHHhCCCEEEECCeEEEEEc---cCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 0 001113345677899999876655 322 22344555567788999999999999886
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00053 Score=79.62 Aligned_cols=138 Identities=22% Similarity=0.269 Sum_probs=88.0
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-------------------------------c---------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-------------------------------V--------- 609 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------~--------- 609 (866)
.|+|+|||+|.+|+-.+..|.+.|.+++++++.+.+... +
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 379999999999999999999999999999987654211 0
Q ss_pred --cHHHHHHHHHHHHHcCC--EEEeCceEEEEEEcC-----CeEEEEEeeCCCCccceeEEEeccEEEEeecc--ccCCC
Q psy9583 610 --DEEIAKKAFHLLNKQGL--NIILNTKIHDIKINK-----ENVLINYSNKSTNVKTEIITSIFDKLLIAIGR--IPNTN 678 (866)
Q Consensus 610 --d~~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~-----~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~--~p~~~ 678 (866)
..++.++++...+..++ .+.++++|++++..+ +.+.++.. .+|. ..+..+|.|++|+|. .|+.+
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~-~~g~----~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE-NDGK----EETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET-TTTE----EEEEEECEEEEEE-SSSCESB-
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee-cCCe----EEEEEeCeEEEcCCCcCCCCCC
Confidence 15678888888887776 588999999998754 24666654 2343 346679999999996 35543
Q ss_pred CCCccccCeeecCCCcEEeCCCCCC----CCCCEEEecccC
Q psy9583 679 NLNIDKIGLKVNENNFIIVNDNCET----NIPNIYAIGDVV 715 (866)
Q Consensus 679 ~l~l~~~gl~~~~~G~i~Vd~~l~T----s~~~VyA~GD~a 715 (866)
.. .-.|++.= .|.+.-...++. ..++|-.+|-..
T Consensus 156 ~~--~~~G~e~F-~G~i~HS~~yr~~~~f~gKrVlVVG~g~ 193 (531)
T PF00743_consen 156 EP--SFPGLEKF-KGEIIHSKDYRDPEPFKGKRVLVVGGGN 193 (531)
T ss_dssp ------CTGGGH-CSEEEEGGG--TGGGGTTSEEEEESSSH
T ss_pred hh--hhhhhhcC-CeeEEccccCcChhhcCCCEEEEEeCCH
Confidence 20 01123211 455554444432 357788888654
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00021 Score=81.67 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=65.6
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+|+|||||++|+.+|..|++.|.+|+++++.+ .+.. +
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~------~~~~--------~---------------------------- 175 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE------RILN--------K---------------------------- 175 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc------ccCc--------c----------------------------
Confidence 689999999999999999999999999999862 1100 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
..+ . .+...+...+++.||+++.+..+. ++. ... + +...++.++.+|.||+|+|..|.
T Consensus 176 ~~~-~-----------~~~~~~~~~l~~~gV~v~~~~~v~~i~~---~~~-~-v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 176 LFD-E-----------EMNQIVEEELKKHEINLRLNEEVDSIEG---EER-V-KVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred ccC-H-----------HHHHHHHHHHHHcCCEEEeCCEEEEEec---CCC-E-EEEcCCCEEEeCEEEECCCccCC
Confidence 000 0 001113345677899999877665 322 222 2 22245678999999999999876
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00015 Score=82.86 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=27.7
Q ss_pred eecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 395 VIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 395 IIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
|||+|.||++||.++++.|.+|+|+||.+
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~ 29 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAP 29 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 79999999999999999999999999973
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00031 Score=76.82 Aligned_cols=41 Identities=29% Similarity=0.548 Sum_probs=38.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
..||+|||+|.+||.||..|.+.|++|+|+|.+ +.+||.|.
T Consensus 7 ~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar------~r~GGR~~ 47 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKAGYQVQILEAR------DRVGGRSL 47 (450)
T ss_pred CCcEEEECCchHHHHHHHHHhhcCcEEEEEecc------CCcCceeE
Confidence 589999999999999999999999999999987 78888773
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00027 Score=81.67 Aligned_cols=98 Identities=18% Similarity=0.280 Sum_probs=66.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+|+++.+ .+ .|.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~------~~---------l~~--------------------------- 210 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLD------RA---------LPN--------------------------- 210 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCC------Cc---------CCc---------------------------
Confidence 579999999999999999999999999999862 11 000
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEE--EEEcCCc--eEEEecEEEEecCCCCc
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEI--QIINKTK--ETITAKYIIIATGSKAR 545 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v--~v~~~~g--~~i~~d~lViATGs~p~ 545 (866)
.+. .+...+...+++.||+++.++.+. +.. ....+ .+...++ .++.+|.||+|+|..|.
T Consensus 211 -~d~------------~~~~~l~~~l~~~gV~i~~~~~v~~i~~---~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 211 -EDA------------EVSKEIAKQYKKLGVKILTGTKVESIDD---NGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred -cCH------------HHHHHHHHHHHHCCCEEEECCEEEEEEE---eCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 000 001113445778899999987665 322 12223 3321234 57999999999999887
Q ss_pred C
Q psy9583 546 S 546 (866)
Q Consensus 546 ~ 546 (866)
.
T Consensus 275 ~ 275 (466)
T PRK07818 275 V 275 (466)
T ss_pred C
Confidence 4
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00019 Score=81.23 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=31.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+|+|||||+||+++|..|++.|++|+|+|+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 679999999999999999999999999999973
|
|
| >KOG0238|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=4.1e-05 Score=82.87 Aligned_cols=61 Identities=21% Similarity=0.325 Sum_probs=58.9
Q ss_pred EEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 18 ATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 18 g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
|.|.+.+||+||.|++||.++.++.||+...+.||.+|++..+.+++|++|.-|.+|..++
T Consensus 610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~v~~g~vlv~~~ 670 (670)
T KOG0238|consen 610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGATVGDGAVLVEFE 670 (670)
T ss_pred CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcccCCCceEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999998864
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=82.60 Aligned_cols=98 Identities=20% Similarity=0.272 Sum_probs=67.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.+ .+. |. .
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~------~~l---------~~---------------------~----- 211 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALP------RIL---------PG---------------------E----- 211 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC------CcC---------Cc---------------------C-----
Confidence 579999999999999999999999999999862 210 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc---eEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK---ETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g---~~i~~d~lViATGs~p~~ 546 (866)
..+. ...+...+++.||+++.+..+. +.. ..+.+.+...++ +++.+|.||+|+|..|..
T Consensus 212 ~~~~--------------~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 212 DKEI--------------SKLAERALKKRGIKIKTGAKAKKVEQ---TDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred CHHH--------------HHHHHHHHHHcCCEEEeCCEEEEEEE---eCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 0000 0112345677899999987665 322 223454543333 679999999999999874
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00031 Score=80.95 Aligned_cols=98 Identities=16% Similarity=0.259 Sum_probs=66.8
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||++|+.+|..+++.|.+|+++++.+ .+. |. .
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~------~ll---------~~--------------------------~ 209 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP------QLL---------PG--------------------------E 209 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC------CcC---------cc--------------------------c
Confidence 579999999999999999999999999999862 110 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc-eEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~p~~ 546 (866)
..+ +...+...+++.||+++.++.+. ++. ....+.+..+++ .++.+|.||+|+|..|..
T Consensus 210 d~e--------------~~~~l~~~L~~~GI~i~~~~~V~~i~~---~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~ 270 (458)
T PRK06912 210 DED--------------IAHILREKLENDGVKIFTGAALKGLNS---YKKQALFEYEGSIQEVNAEFVLVSVGRKPRV 270 (458)
T ss_pred cHH--------------HHHHHHHHHHHCCCEEEECCEEEEEEE---cCCEEEEEECCceEEEEeCEEEEecCCccCC
Confidence 000 01112345677899999987655 322 223445543322 479999999999998874
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.6e-05 Score=83.48 Aligned_cols=42 Identities=36% Similarity=0.620 Sum_probs=38.5
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcccee
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV 438 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~ 438 (866)
+||+|||||++|+++|.+|++.|.+|+|+|++ +.+||.|...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~------~~iGG~~~~~ 43 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKR------NHIGGNCYDE 43 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC------CCCCCceeee
Confidence 79999999999999999999999999999997 7899987543
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00022 Score=87.33 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=68.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+|+++.+ .+- + . .+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~------~ll---------~-----~---------------~l---- 180 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP------GLM---------A-----K---------------QL---- 180 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC------chh---------h-----h---------------hc----
Confidence 3679999999999999999999999999999751 110 0 0 00
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
+. .....+...+++.||+++.+..+. +.. ......+...+|.++.+|.||+|+|.+|..
T Consensus 181 ---d~------------~~~~~l~~~l~~~GV~v~~~~~v~~i~~---~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~ 240 (785)
T TIGR02374 181 ---DQ------------TAGRLLQRELEQKGLTFLLEKDTVEIVG---ATKADRIRFKDGSSLEADLIVMAAGIRPND 240 (785)
T ss_pred ---CH------------HHHHHHHHHHHHcCCEEEeCCceEEEEc---CCceEEEEECCCCEEEcCEEEECCCCCcCc
Confidence 00 001123445778899999987654 211 112333444567889999999999999874
|
|
| >PRK13380 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=9.3e-05 Score=69.48 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=43.9
Q ss_pred EEEEEEEeC-CCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC
Q psy9583 18 ATLLNWHKK-EGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS 66 (866)
Q Consensus 18 g~i~~w~~~-~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~ 66 (866)
|+|+.+.+. +|++|++||+++.||++|+..+|.||.+|+|.++..+.-+
T Consensus 44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~ 93 (144)
T PRK13380 44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALED 93 (144)
T ss_pred CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhh
Confidence 678888776 8999999999999999999999999999999998866544
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00082 Score=74.40 Aligned_cols=102 Identities=22% Similarity=0.282 Sum_probs=76.9
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-------------------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------------------------------------------- 608 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------- 608 (866)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 5899999999999999999999999999886532110
Q ss_pred -------------------------c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeC-CCCccceeEE
Q psy9583 609 -------------------------V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNK-STNVKTEIIT 661 (866)
Q Consensus 609 -------------------------~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~~~~~ 661 (866)
+ -..+.+.+.+.+++.|++++++++++.++.+.+++.+.+... +|. ..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~----~~~ 158 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGE----EET 158 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCE----EEE
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCc----eeE
Confidence 0 134566777778888999999999999998888877766643 333 357
Q ss_pred EeccEEEEeeccccCC
Q psy9583 662 SIFDKLLIAIGRIPNT 677 (866)
Q Consensus 662 ~~~D~vi~a~G~~p~~ 677 (866)
+++|+||-|-|.....
T Consensus 159 i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 159 IEADLVVGADGAHSKV 174 (356)
T ss_dssp EEESEEEE-SGTT-HH
T ss_pred EEEeeeecccCcccch
Confidence 9999999999987644
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0002 Score=72.50 Aligned_cols=103 Identities=30% Similarity=0.409 Sum_probs=73.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC---Cccc-----------HHHH--H--HHHHHHHHcCCEEEeCce
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL---NTVD-----------EEIA--K--KAFHLLNKQGLNIILNTK 633 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l---~~~d-----------~~~~--~--~l~~~l~~~GV~i~~~~~ 633 (866)
+|+|||||+.|+.+|..|.+.+.+++++++.+... ..+. .... . .+.+.+...+++++.++.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 80 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRLNAK 80 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEHHHT
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEeeccc
Confidence 58999999999999999999999999997765321 1100 0111 1 444556788999999999
Q ss_pred EEEEEEcCCeE-----EEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 634 IHDIKINKENV-----LINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 634 v~~i~~~~~~~-----~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+.++......+ .+.... .+. ..++.+|.+|+|+|..|+...
T Consensus 81 v~~i~~~~~~~~~~~~~~~~~~-~~~----~~~~~~d~lviAtG~~~~~~~ 126 (201)
T PF07992_consen 81 VVSIDPESKRVVCPAVTIQVVE-TGD----GREIKYDYLVIATGSRPRTPN 126 (201)
T ss_dssp EEEEEESTTEEEETCEEEEEEE-TTT----EEEEEEEEEEEESTEEEEEES
T ss_pred cccccccccccccCcccceeec-cCC----ceEecCCeeeecCccccceee
Confidence 99998876632 222211 111 358999999999999987654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00037 Score=79.35 Aligned_cols=109 Identities=20% Similarity=0.259 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC--Ccc---------cHHHHHHHHHHHHHcCCEEEeCceEEEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL--NTV---------DEEIAKKAFHLLNKQGLNIILNTKIHDIK 638 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l--~~~---------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 638 (866)
.++++|||||+.|+.+|..|.+.+.+|+++++.+.+. +.+ ..++...+.+.++..|++++. .+|++|+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~-~~V~~Id 88 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR-AVVYDVD 88 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE-EEEEEEE
Confidence 4789999999999999999977678999999887753 111 122334455667777888764 6899998
Q ss_pred EcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 639 INKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 639 ~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.++..+.+.....+.....+..++.+|.+|+|+|.+|+...
T Consensus 89 ~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ 129 (424)
T PTZ00318 89 FEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFN 129 (424)
T ss_pred cCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCC
Confidence 77766655322111000001237999999999999987544
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00054 Score=79.18 Aligned_cols=97 Identities=13% Similarity=0.122 Sum_probs=64.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.. .+ |. +
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~------~l----------~~---------------------~----- 218 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI------LL----------RG---------------------F----- 218 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecc------cc----------cc---------------------c-----
Confidence 469999999999999999999999999998630 00 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc---eEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK---ETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g---~~i~~d~lViATGs~p~~ 546 (866)
+.++ ...+...+++.||+++.+..+. +... ...+.+...++ .++.+|.|++|+|..|..
T Consensus 219 d~~~--------------~~~l~~~L~~~gV~i~~~~~v~~v~~~---~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 219 DQDC--------------ANKVGEHMEEHGVKFKRQFVPIKVEQI---EAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred CHHH--------------HHHHHHHHHHcCCEEEeCceEEEEEEc---CCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 0000 1113345777899999887543 2211 12333332222 479999999999998874
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00011 Score=85.86 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=32.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35899999999999999999999999999999973
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00078 Score=78.47 Aligned_cols=102 Identities=17% Similarity=0.150 Sum_probs=78.1
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc------------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------------------------------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 608 (866)
..|+|||||+.|+-+|..|++.|.+|+++++.+...+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 36999999999999999999999999999876432100
Q ss_pred -c--------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 609 -V--------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 609 -~--------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
+ -..+.+.+.+.+++.|++++.++++++++.+++++.+.+...+|. .++.+|.||.|.|.
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~-----~~i~a~~vVgADG~ 157 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGL-----RTLTSSYVVGADGA 157 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCcc-----EEEEeCEEEECCCC
Confidence 0 012345555666778999999999999998888887777643442 37899999999998
Q ss_pred ccCC
Q psy9583 674 IPNT 677 (866)
Q Consensus 674 ~p~~ 677 (866)
+...
T Consensus 158 ~S~v 161 (493)
T PRK08244 158 GSIV 161 (493)
T ss_pred ChHH
Confidence 7643
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.001 Score=72.94 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=72.5
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC---cC--------CCc-----ccHHHHHHHHHHHHHcCCEEEeCc
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS---NF--------LNT-----VDEEIAKKAFHLLNKQGLNIILNT 632 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~---~~--------l~~-----~d~~~~~~l~~~l~~~GV~i~~~~ 632 (866)
..++++|||||+.|+.+|..+.++|.++++++... .+ ++. ..+++.+.+.+.....++++..+
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD- 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEee-
Confidence 35789999999999999999999999999886432 11 011 12455777778888888888765
Q ss_pred eEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 633 KIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 633 ~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.+..++..++.+.+.. +.. .+.+|.||+|+|..|+...
T Consensus 84 ~v~~v~~~~~~~~v~~---~~~------~~~~d~vilAtG~~~~~~~ 121 (321)
T PRK10262 84 HINKVDLQNRPFRLTG---DSG------EYTCDALIIATGASARYLG 121 (321)
T ss_pred EEEEEEecCCeEEEEe---cCC------EEEECEEEECCCCCCCCCC
Confidence 5667776655554432 122 6889999999999986543
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00064 Score=81.11 Aligned_cols=37 Identities=22% Similarity=0.546 Sum_probs=33.6
Q ss_pred cccccceeeecCCccHHHHHHHHHHC-CCeEEEEeccC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWK 423 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~-g~~V~liek~~ 423 (866)
|...+||+||||||+||++|..|+++ |.+|+|||+.+
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 44579999999999999999999995 99999999974
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00016 Score=82.29 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=31.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
+||+|||||+||+++|..|++.|++|+|||+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 479999999999999999999999999999973
|
|
| >PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00038 Score=82.10 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=33.9
Q ss_pred CcEEeCCCCCC----------CCCCEEEecccCC-CC--------CcHHHHHHHHHHHHHHHhC
Q psy9583 693 NFIIVNDNCET----------NIPNIYAIGDVVR-GP--------MLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 693 G~i~Vd~~l~T----------s~~~VyA~GD~a~-~~--------~~~~~A~~~g~~aa~~i~g 737 (866)
|+|.+|...+| ++||+||+|+|++ +. .....|+-.|++|++++..
T Consensus 340 GGi~vd~~g~~~~~d~~~~~t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~ 403 (570)
T PRK05675 340 GGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEK 403 (570)
T ss_pred CCcccCCCCeeecccccccCCccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHHH
Confidence 66777777665 7999999999974 21 1246678889999998864
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00032 Score=86.77 Aligned_cols=93 Identities=16% Similarity=0.232 Sum_probs=72.3
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .++.++.+...+.+++.||+|++++.+-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~--- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGK--- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEecc---
Confidence 379999999999999999999999999999999875432 24677778888889999999999876521
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc-cCC
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI-PNT 677 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~-p~~ 677 (866)
.+++. +.. ...+|.|++|+|.. |..
T Consensus 382 -----dit~~--~l~------~~~yDAV~LAtGA~~pr~ 407 (944)
T PRK12779 382 -----TATLE--DLK------AAGFWKIFVGTGAGLPTF 407 (944)
T ss_pred -----EEeHH--Hhc------cccCCEEEEeCCCCCCCc
Confidence 13332 221 35689999999984 544
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0011 Score=76.86 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=76.2
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC---C---ccc----------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL---N---TVD---------------------------------- 610 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l---~---~~d---------------------------------- 610 (866)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... + .+.
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 469999999999999999999999999999765311 0 000
Q ss_pred ----------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 611 ----------------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 611 ----------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
..+.+.+.+.+++.|+++++++++++++.+++++.+++. +|. ++.+|.||.|.|..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~--~g~------~i~a~~vVgADG~~ 155 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELS--DGR------TLRAQYLVGCDGGR 155 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEEC--CCC------EEEeCEEEEecCCC
Confidence 122334445567779999999999999988888777663 454 78999999999998
Q ss_pred cCC
Q psy9583 675 PNT 677 (866)
Q Consensus 675 p~~ 677 (866)
+..
T Consensus 156 S~v 158 (488)
T PRK06834 156 SLV 158 (488)
T ss_pred CCc
Confidence 754
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=65.04 Aligned_cols=168 Identities=20% Similarity=0.241 Sum_probs=101.7
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-------cc-------------------------------H
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-------VD-------------------------------E 611 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-------~d-------------------------------~ 611 (866)
...|+|||+|++|+-+|.+|++.|.+|.+++|+-.+... |+ .
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 467999999999999999999999999999987654321 11 2
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEEEEEeeCC----CCccceeEEEeccEEEEeeccccCCCCCCccc--
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKE-NVLINYSNKS----TNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK-- 684 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~v~~~~~~----g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~-- 684 (866)
++...+....-+.|.+++....++.+.-.++ ++.-.+.+.. -...-+...++++.|+-|||.....-.+..+.
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~~ 189 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRIP 189 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhcc
Confidence 2233333333446788888889988766555 4432222211 11233456889999999999876543221111
Q ss_pred -cCeeecCCCcEEeC--CCC-----CCCCCCEEEecccCC----CCC--cHHHH-HHHHHHHHHHHhC
Q psy9583 685 -IGLKVNENNFIIVN--DNC-----ETNIPNIYAIGDVVR----GPM--LAHKA-EEEGIMVAEHISG 737 (866)
Q Consensus 685 -~gl~~~~~G~i~Vd--~~l-----~Ts~~~VyA~GD~a~----~~~--~~~~A-~~~g~~aa~~i~g 737 (866)
++.++...+..+.+ |.+ +--+||+|++|=.+. .|+ -...+ ..+|+.||+.++.
T Consensus 190 ~l~~~~~Ge~~mw~e~~E~lvV~~T~eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e 257 (262)
T COG1635 190 ELGIEVPGEKSMWAERGEDLVVENTGEVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILE 257 (262)
T ss_pred ccccccCCCcchhhhHHHHHHHhccccccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHH
Confidence 12332222223332 221 224799999998764 221 23333 3568888877654
|
|
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0019 Score=76.44 Aligned_cols=185 Identities=18% Similarity=0.273 Sum_probs=115.0
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEEEc
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKIN 640 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~ 640 (866)
+++|+|||.|+.|+-+|..|.+.|..|++.+|.+++.. -+|.-+.++-...|.+.||+|.+|+.|-.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk---- 1860 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGK---- 1860 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccc----
Confidence 58999999999999999999999999999999998742 24777888888999999999999988732
Q ss_pred CCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccc---cCeee-----cCCCcEEeCCCC-----CCCCCC
Q psy9583 641 KENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK---IGLKV-----NENNFIIVNDNC-----ETNIPN 707 (866)
Q Consensus 641 ~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~---~gl~~-----~~~G~i~Vd~~l-----~Ts~~~ 707 (866)
. +.+ |+ ..-+.|.|++|+|..-..++- .+. .|+.+ ..+-.-..|..+ ...-+.
T Consensus 1861 --~--vs~---d~------l~~~~daiv~a~gst~prdlp-v~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkk 1926 (2142)
T KOG0399|consen 1861 --H--VSL---DE------LKKENDAIVLATGSTTPRDLP-VPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKK 1926 (2142)
T ss_pred --c--ccH---HH------HhhccCeEEEEeCCCCCcCCC-CCCccccccHHHHHHHHHhHHhhhccccccceeccCCCe
Confidence 1 222 11 134569999999975433321 111 11110 000011122222 223355
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHH--hCCCCCCCCCCccEEEEccCceeeeecCHHHHHhc-CCcE
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHI--SGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKH-NISY 774 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i--~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~~~~ 774 (866)
|..+|---.+......++++|..-..|+ +-.+.+......||-. .|-+-.|-...+|+++. |-|.
T Consensus 1927 vivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpq--wprvfrvdygh~e~~~~~g~dp 1994 (2142)
T KOG0399|consen 1927 VIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQ--WPRVFRVDYGHAEAKEHYGSDP 1994 (2142)
T ss_pred EEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCcc--CceEEEeecchHHHHHHhCCCc
Confidence 6777633333444556667775544443 3333222233345443 36677888899999876 5443
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00048 Score=84.12 Aligned_cols=91 Identities=24% Similarity=0.390 Sum_probs=69.4
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
.+++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .++.+....-.+.+++.||++++++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di~- 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DLT- 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EEE-
Confidence 468999999999999999999999999999998775422 134555666667888899999999876 221
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
+. +.. ...+|.||+|||..+..
T Consensus 616 --------le--~L~------~~gYDaVILATGA~~~~ 637 (1019)
T PRK09853 616 --------VE--QLK------NEGYDYVVVAIGADKNG 637 (1019)
T ss_pred --------hh--hhe------eccCCEEEECcCCCCCC
Confidence 11 111 44589999999997543
|
|
| >KOG0029|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=8.1e-05 Score=85.15 Aligned_cols=40 Identities=35% Similarity=0.558 Sum_probs=36.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
.++|+|||||+|||+||++|.+.|++|+|+|.+ +++||..
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEAR------dRvGGRI 54 (501)
T KOG0029|consen 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEAR------DRVGGRI 54 (501)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCceEEEecc------CCcCcee
Confidence 589999999999999999999999999999997 7788764
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00023 Score=79.30 Aligned_cols=31 Identities=35% Similarity=0.387 Sum_probs=30.0
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
||+|||||.+|+.||..|++.|++|+|||+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~r 32 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMR 32 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEecc
Confidence 7999999999999999999999999999986
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0013 Score=75.79 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=31.8
Q ss_pred cccceeeecCCccHHHHHHHHHHC--CCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~ 423 (866)
.++||+|||||+.|++.|++|++. |.+|+|+||..
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~ 40 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLD 40 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence 358999999999999999999985 78999999974
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00047 Score=79.13 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=67.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..+++.|.+|+++++.+ .+. |. .
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~------~~l---------~~---------------------~----- 205 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE------LIL---------RG---------------------F----- 205 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC------CCC---------cc---------------------c-----
Confidence 579999999999999999999999999999862 110 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..+ +...+...+++.||+++.+..+. +.. ....+.+...++.++.+|.||+|+|..|..
T Consensus 206 d~~--------------~~~~l~~~l~~~gV~i~~~~~v~~i~~---~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 206 DDD--------------MRALLARNMEGRGIRIHPQTSLTSITK---TDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred CHH--------------HHHHHHHHHHHCCCEEEeCCEEEEEEE---cCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 000 01112345677899999887654 321 112344544456789999999999998874
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00089 Score=77.34 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=30.6
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+++|||||+.|+.+|..+++.|.+|+||++.
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~ 206 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMF 206 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 57999999999999999999999999999986
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.001 Score=78.40 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=74.4
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC------------Cc----ccHHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL------------NT----VDEEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l------------~~----~d~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
..|+|||||+.|+.+|..+++.|.+|+++++.. +. +. ...++.+.+.+.+++.|++++ ++.+
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~-~~~V 82 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL-QAEV 82 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe-ccEE
Confidence 469999999999999999999999999999754 21 11 124667777888888999986 6788
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..+..+++...+... ++ .+.+|.+|+|+|.+|....
T Consensus 83 ~~i~~~~~~~~V~~~--~g-------~~~a~~lVlATGa~p~~~~ 118 (555)
T TIGR03143 83 LDVDFDGDIKTIKTA--RG-------DYKTLAVLIATGASPRKLG 118 (555)
T ss_pred EEEEecCCEEEEEec--CC-------EEEEeEEEECCCCccCCCC
Confidence 888765544444332 33 5788999999999887643
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00061 Score=78.65 Aligned_cols=100 Identities=14% Similarity=0.192 Sum_probs=66.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.+ .+. |. .
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~------~~l---------~~--------------------------~ 210 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP------RLL---------PR--------------------------E 210 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC------CCC---------cc--------------------------c
Confidence 679999999999999999999999999999862 211 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g~~i~~d~lViATGs~p~~ 546 (866)
..+. ...+...+++.||+++.++.+. +.. +.....+.+.. .++..+.+|.||+|+|..|..
T Consensus 211 ~~~~--------------~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 211 DEDV--------------AAAVREILEREGIDVRLNAECIRVER-DGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred CHHH--------------HHHHHHHHHhCCCEEEeCCEEEEEEE-cCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 0000 0112345677899999886655 322 11112233332 234679999999999999874
|
|
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00091 Score=73.39 Aligned_cols=104 Identities=13% Similarity=0.118 Sum_probs=78.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
...|+++|+|..|+.+|..|...+.+|++|++.+. |.|.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~---------------~~~~-------------------------- 251 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW---------------LLPR-------------------------- 251 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCcc---------------chhh--------------------------
Confidence 46799999999999999999999999999998621 1111
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
-+...+.+.++.+++++||+++.++.+..-.-+...+...|...++.++.+|-||+.+|++|...
T Consensus 252 -------------lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~ 316 (478)
T KOG1336|consen 252 -------------LFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTS 316 (478)
T ss_pred -------------hhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccccc
Confidence 01112334467789999999999998773212223456667777889999999999999998853
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00049 Score=76.87 Aligned_cols=97 Identities=19% Similarity=0.290 Sum_probs=71.6
Q ss_pred eEEEECCcHHHHHHHHHHHhc---CCcEEEEecCCcCC--Ccc---------cHHHHHHHHHHHHHcCCEEEeCceEEEE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNFL--NTV---------DEEIAKKAFHLLNKQGLNIILNTKIHDI 637 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~---g~~Vtli~~~~~~l--~~~---------d~~~~~~l~~~l~~~GV~i~~~~~v~~i 637 (866)
+|+|||||+.|+.+|..+.+. +.+|+++++.+.+. +.+ ..++...+.+.+++.|++++.+ .|+++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~i 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEE-EEEEE
Confidence 589999999999999998643 57899999887642 111 1233444566777889999875 78888
Q ss_pred EEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 638 KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 638 ~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..++.. +.+. +|+ ++.+|.+|+|+|.+|+...
T Consensus 80 d~~~~~--V~~~--~g~------~~~yD~LviAtG~~~~~~~ 111 (364)
T TIGR03169 80 DPDRRK--VLLA--NRP------PLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ecccCE--EEEC--CCC------cccccEEEEccCCCCCCCC
Confidence 776543 3343 555 7899999999999987654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0005 Score=79.13 Aligned_cols=99 Identities=20% Similarity=0.127 Sum_probs=68.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.+ .+. +. .
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~------~~l---------~~---------------------~----- 206 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD------APL---------RG---------------------F----- 206 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC------CCc---------cc---------------------c-----
Confidence 679999999999999999999999999999862 110 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.. .+...+...+++.||+++.++.+. +.. .+...+.+...++.++.+|.||+|+|..|..
T Consensus 207 ~~--------------~~~~~l~~~L~~~GV~i~~~~~V~~i~~--~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 207 DP--------------DIRETLVEEMEKKGIRLHTNAVPKAVEK--NADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred CH--------------HHHHHHHHHHHHCCcEEECCCEEEEEEE--cCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 00 001123345677899999887665 321 1112245555567789999999999998874
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0005 Score=78.02 Aligned_cols=99 Identities=25% Similarity=0.366 Sum_probs=70.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||+|++|+.+|..|++.|++|+++|+. +.+++....
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~------~~~~~~~~~-------------------------------- 177 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAA------DRLGGQLLD-------------------------------- 177 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcc------cccchhhhh--------------------------------
Confidence 378999999999999999999999999999997 455442100
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEE---EEcCCceEEEecEEEEecCCCCc
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQ---IINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~---v~~~~g~~i~~d~lViATGs~p~ 545 (866)
..+...+...++++||+++.+..+. ++. ...... +....+..+++|.+++++|.+|.
T Consensus 178 ----------------~~~~~~~~~~l~~~gi~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 178 ----------------PEVAEELAELLEKYGVELLLGTKVVGVEG---KGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred ----------------HHHHHHHHHHHHHCCcEEEeCCceEEEEc---ccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 0011224556788899998888766 332 111111 33345678999999999999985
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00057 Score=78.82 Aligned_cols=98 Identities=13% Similarity=0.165 Sum_probs=68.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||+|+.|+.+|..|++.|.+|++|++.+ .+....
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~------~~l~~~----------------------------------- 216 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD------RVLPGE----------------------------------- 216 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC------cCCCCC-----------------------------------
Confidence 579999999999999999999999999999862 211000
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..+ ....+...+++.||+++.+..+. +.. ....+.+...+++++.+|.|++|+|..|..
T Consensus 217 d~~--------------~~~~l~~~L~~~gV~i~~~~~v~~v~~---~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 217 DAD--------------AAEVLEEVFARRGMTVLKRSRAESVER---TGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred CHH--------------HHHHHHHHHHHCCcEEEcCCEEEEEEE---eCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 000 01113445778899999887654 321 113355554566789999999999999874
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00057 Score=79.38 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=68.5
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..+++.|.+|+|+++.+ .+- |.
T Consensus 204 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~------~~l---------~~--------------------------- 241 (499)
T PLN02507 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE------LPL---------RG--------------------------- 241 (499)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC------CcC---------cc---------------------------
Confidence 579999999999999999999999999999862 110 00
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
++. .+...+...+++.||+++.+..+. +.. ..+.+.+...++.++.+|.|++|+|..|..
T Consensus 242 -~d~------------~~~~~l~~~l~~~GI~i~~~~~V~~i~~---~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 242 -FDD------------EMRAVVARNLEGRGINLHPRTNLTQLTK---TEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred -cCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEE---eCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 000 001113345677899999887655 321 123455555566789999999999998874
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00061 Score=78.72 Aligned_cols=100 Identities=16% Similarity=0.224 Sum_probs=66.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||+|+.|+.+|..|++.|.+|+++++.+ .+. |. .
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~------~~l---------~~--------------------------~ 205 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSD------RLL---------PR--------------------------E 205 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC------cCC---------Cc--------------------------c
Confidence 579999999999999999999999999999862 110 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcC-CceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINK-TKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~-~g~~i~~d~lViATGs~p~~ 546 (866)
..++. ..+...+++.||+++.++.+. +.. +.....+.+... +++++.+|.||+|+|..|..
T Consensus 206 d~~~~--------------~~l~~~l~~~gV~i~~~~~V~~i~~-~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 206 EPEIS--------------AAVEEALAEEGIEVVTSAQVKAVSV-RGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred CHHHH--------------HHHHHHHHHcCCEEEcCcEEEEEEE-cCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 00000 112345677899999987554 322 111122333322 23689999999999998874
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0003 Score=81.07 Aligned_cols=90 Identities=28% Similarity=0.368 Sum_probs=70.7
Q ss_pred cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------C--cccHHHHHHHHHHHHHcCCEEEeCceEEEEE
Q psy9583 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------N--TVDEEIAKKAFHLLNKQGLNIILNTKIHDIK 638 (866)
Q Consensus 568 ~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------~--~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 638 (866)
..+++|+|||||+.|+++|..|++.|.+|+++++.+.+. + .++.++.....+.+++.|+++++++.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~-- 215 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGR-- 215 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECC--
Confidence 346899999999999999999999999999999987653 1 23667778888889999999999887621
Q ss_pred EcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 639 INKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 639 ~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
.+.+. +. .+.+|.||+|||..
T Consensus 216 ------~v~~~--~~-------~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 ------DITLD--EL-------RAGYDAVFIGTGAG 236 (457)
T ss_pred ------ccCHH--HH-------HhhCCEEEEccCCC
Confidence 01111 11 36789999999985
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0051 Score=66.58 Aligned_cols=169 Identities=16% Similarity=0.156 Sum_probs=97.8
Q ss_pred CCeEEEECCcHHHHHHHHHHHhc-CCcEEEEecCCcCCC---------------------------ccc-----------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRL-GSEVTILEMSSNFLN---------------------------TVD----------- 610 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~-g~~Vtli~~~~~~l~---------------------------~~d----------- 610 (866)
.-.|+|||+|..|+-+|..+++. |.+|+++++...+.. .++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 35899999999999999999976 889999998654311 001
Q ss_pred HHHHHHHH-HHHHHcCCEEEeCceEEEEEEcCCeEEEEEee-----CCCCcc--ceeEEEeccEEEEeeccccCCCCCC-
Q psy9583 611 EEIAKKAF-HLLNKQGLNIILNTKIHDIKINKENVLINYSN-----KSTNVK--TEIITSIFDKLLIAIGRIPNTNNLN- 681 (866)
Q Consensus 611 ~~~~~~l~-~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~-----~~g~~~--~~~~~~~~D~vi~a~G~~p~~~~l~- 681 (866)
.++...+. +.+++.|++++.++.+.++..+++.+.-.+.+ .++... .+...+.++.||+|||..+......
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga~~~ 251 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGATGV 251 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchhhhh
Confidence 11112233 33445789999999999988766544322210 011100 1234789999999999654321111
Q ss_pred --ccccCeee--cCCCcEEeCC-------CCCCCCCCEEEecccCC----CCC--cHHHH-HHHHHHHHHHHhCC
Q psy9583 682 --IDKIGLKV--NENNFIIVND-------NCETNIPNIYAIGDVVR----GPM--LAHKA-EEEGIMVAEHISGQ 738 (866)
Q Consensus 682 --l~~~gl~~--~~~G~i~Vd~-------~l~Ts~~~VyA~GD~a~----~~~--~~~~A-~~~g~~aa~~i~g~ 738 (866)
+...|+.. ..-...+++. +-+--+||+|++|=.+. .|+ -...+ ...|+.||+.|+..
T Consensus 252 ~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~t~ev~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~ 326 (357)
T PLN02661 252 KRLKSIGMIDSVPGMKALDMNAAEDAIVRLTREVVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKA 326 (357)
T ss_pred hcccccCCccCCCCccccchhhHHHHHHhccCcccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHH
Confidence 11122210 0011122221 11123799999998774 232 23344 46788899888754
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00058 Score=83.64 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=73.2
Q ss_pred CeEEEECCcHHHHHHHHHHHhc----CCcEEEEecCCcCC--C-cc--------cHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL----GSEVTILEMSSNFL--N-TV--------DEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~----g~~Vtli~~~~~~l--~-~~--------d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
++++|||+|+.|+.+|..|.+. +.+|+++.+.+++. + .+ ..++.....+.+++.||+++.++.+.
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~g~~V~ 83 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAI 83 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEcCCEEE
Confidence 5899999999999999999765 46899999887742 1 11 12222333466788999999999999
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
++..+.. .+.+ .+|. .+.+|.+|+|||..|....
T Consensus 84 ~Id~~~~--~V~~--~~G~------~i~yD~LVIATGs~p~~p~ 117 (847)
T PRK14989 84 TINRQEK--VIHS--SAGR------TVFYDKLIMATGSYPWIPP 117 (847)
T ss_pred EEeCCCc--EEEE--CCCc------EEECCEEEECCCCCcCCCC
Confidence 8876542 2333 2554 7999999999999987654
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00027 Score=81.00 Aligned_cols=93 Identities=26% Similarity=0.362 Sum_probs=70.6
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------C--cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------N--TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------~--~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.....+.+++.||++++++.+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~--- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGK--- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCC---
Confidence 35799999999999999999999999999999876542 2 24667777777889999999999885511
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeecc-ccCCC
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR-IPNTN 678 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~-~p~~~ 678 (866)
.+.+. +. ...+|.||+|+|. .|...
T Consensus 209 -----~v~~~--~~-------~~~yd~viiAtGa~~p~~~ 234 (449)
T TIGR01316 209 -----TATLE--EL-------FSQYDAVFIGTGAGLPKLM 234 (449)
T ss_pred -----cCCHH--HH-------HhhCCEEEEeCCCCCCCcC
Confidence 12221 11 2458999999997 56543
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0015 Score=74.29 Aligned_cols=103 Identities=11% Similarity=0.235 Sum_probs=74.0
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC----C---ccc--------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL----N---TVD-------------------------------- 610 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l----~---~~d-------------------------------- 610 (866)
..+|+|||||+.|+-+|..|++.|.+|+++++.+... . .+.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 4579999999999999999999999999998765321 0 000
Q ss_pred -----------------------HHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccE
Q psy9583 611 -----------------------EEIAKKAFHLLNK-QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 611 -----------------------~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~ 666 (866)
..+.+.+.+.+.+ .|+++++++++++++.+++.+.+++...++ ..++++|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~-----~~~i~adl 172 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGK-----QQTLQSKL 172 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCc-----ceEEeeeE
Confidence 1112223333444 379999999999998887777777753222 23699999
Q ss_pred EEEeeccccCC
Q psy9583 667 LLIAIGRIPNT 677 (866)
Q Consensus 667 vi~a~G~~p~~ 677 (866)
||.|.|.....
T Consensus 173 vIgADG~~S~v 183 (415)
T PRK07364 173 VVAADGARSPI 183 (415)
T ss_pred EEEeCCCCchh
Confidence 99999987654
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=77.50 Aligned_cols=32 Identities=16% Similarity=0.053 Sum_probs=30.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+++|||||+.|+..|..+++.|.+|+|||+.
T Consensus 313 k~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~ 344 (659)
T PTZ00153 313 NYMGIVGMGIIGLEFMDIYTALGSEVVSFEYS 344 (659)
T ss_pred CceEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 57999999999999999999999999999986
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=74.96 Aligned_cols=42 Identities=31% Similarity=0.516 Sum_probs=39.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
++|++|||+|.+|...|..|+++|.+|+||||+ +++||.|.-
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR------~HIGGNaYd 42 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKR------NHIGGNAYD 42 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEecc------ccCCCcccc
Confidence 389999999999999999999999999999998 899999843
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0015 Score=73.71 Aligned_cols=100 Identities=13% Similarity=0.216 Sum_probs=76.5
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-----C-----cc------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-----N-----TV------------------------------ 609 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-----~-----~~------------------------------ 609 (866)
..+|+|||||+.|+-+|..|++.|.+|+++++.+..- + .+
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMRV 85 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEEE
Confidence 3579999999999999999999999999999854210 0 00
Q ss_pred --------------------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEe
Q psy9583 610 --------------------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663 (866)
Q Consensus 610 --------------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~ 663 (866)
...+.+.+.+.+++.|++++.++.+++++.+++++.+++. +|. ++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~--~g~------~~~ 157 (392)
T PRK08773 86 WDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLD--DGR------RLE 157 (392)
T ss_pred EeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEEC--CCC------EEE
Confidence 0223444556667789999999999999887777766654 554 789
Q ss_pred ccEEEEeeccccCC
Q psy9583 664 FDKLLIAIGRIPNT 677 (866)
Q Consensus 664 ~D~vi~a~G~~p~~ 677 (866)
+|.||.|.|..+..
T Consensus 158 a~~vV~AdG~~S~v 171 (392)
T PRK08773 158 AALAIAADGAASTL 171 (392)
T ss_pred eCEEEEecCCCchH
Confidence 99999999998754
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00013 Score=81.22 Aligned_cols=42 Identities=29% Similarity=0.468 Sum_probs=38.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcccee
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV 438 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~ 438 (866)
++|+|+|||.|||+||..|++.|++|+|+|.+ +.+||.|..+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~------~~~GGk~~s~ 42 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEAR------DRLGGKVASW 42 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEecc------CccCceeeee
Confidence 36999999999999999999999999999998 8999988543
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00062 Score=78.38 Aligned_cols=92 Identities=20% Similarity=0.392 Sum_probs=71.4
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------C--cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------N--TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------~--~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.....+.+++.|+++++++.+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRD-- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCc--
Confidence 46899999999999999999999999999999887652 2 246677777788899999999999876320
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
+.+. + . ...+|.||+|+|..+..
T Consensus 218 ------~~~~--~-~------~~~~D~vilAtGa~~~~ 240 (467)
T TIGR01318 218 ------ISLD--D-L------LEDYDAVFLGVGTYRSM 240 (467)
T ss_pred ------cCHH--H-H------HhcCCEEEEEeCCCCCC
Confidence 1111 1 1 24689999999998753
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00071 Score=77.63 Aligned_cols=99 Identities=17% Similarity=0.077 Sum_probs=67.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..|++.|.+|+|+++.+ .+... +
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~------~il~~------------------------------~----- 205 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE------RVLRS------------------------------F----- 205 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC------CCCcc------------------------------c-----
Confidence 579999999999999999999999999999862 11000 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc-eEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~p~~ 546 (866)
+.+ +...+...+++.||+++.+..+. +.. + ....+.+..+++ ..+.+|.||+|+|..|..
T Consensus 206 d~~--------------~~~~~~~~l~~~gI~i~~~~~v~~i~~-~-~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 206 DSM--------------ISETITEEYEKEGINVHKLSKPVKVEK-T-VEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred CHH--------------HHHHHHHHHHHcCCEEEcCCEEEEEEE-e-CCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 000 01113345677899999887655 321 1 112244444455 679999999999999874
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0022 Score=75.78 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=75.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-----c-----------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-----V----------------------------------- 609 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-----~----------------------------------- 609 (866)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+... +
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 457999999999999999999999999999876532110 0
Q ss_pred ---------------------cHHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEE
Q psy9583 610 ---------------------DEEIAKKAFHLLNKQ-GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKL 667 (866)
Q Consensus 610 ---------------------d~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~v 667 (866)
...+...+.+.+.+. |+++++++++++++.+++++.+.+...++. .++.+|.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~-----~~i~ad~v 177 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGP-----YTLEADWV 177 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCc-----EEEEeCEE
Confidence 001122334444443 799999999999998888877777643442 36899999
Q ss_pred EEeeccccCC
Q psy9583 668 LIAIGRIPNT 677 (866)
Q Consensus 668 i~a~G~~p~~ 677 (866)
|.|.|.....
T Consensus 178 VgADG~~S~v 187 (547)
T PRK08132 178 IACDGARSPL 187 (547)
T ss_pred EECCCCCcHH
Confidence 9999987654
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=74.43 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=73.5
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-C-c-------c--------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-N-T-------V-------------------------------- 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-~-~-------~-------------------------------- 609 (866)
-.|+|||||+.|+-+|..|++.|.+|.++++.+... + . +
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 479999999999999999999999999998865221 0 0 0
Q ss_pred ----cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 610 ----DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 610 ----d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
..++.+.+.+.+.+.|++++ ...|++++.++++..+.+. +|. ++.+|.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~~~V~~~--dG~------~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFH-QAKVKKVVHEESKSLVVCD--DGV------KIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCeEEEEEC--CCC------EEEcCEEEECcCCCcC
Confidence 12233455566677899997 5789999887777666664 565 8999999999998754
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0025 Score=73.61 Aligned_cols=99 Identities=22% Similarity=0.280 Sum_probs=65.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..|++.|.+|+++++. +.+. |. .
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~------~~~l---------~~---------~----------------- 208 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERG------DRIL---------PL---------E----------------- 208 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecC------CCcC---------cc---------h-----------------
Confidence 68999999999999999999999999999986 2211 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc--CCceEEEecEEEEecCCCCcCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN--KTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~--~~g~~i~~d~lViATGs~p~~~ 547 (866)
..+ +...+...+++. |+++.+..+. +.. + ....+.+.. .++.++.+|.+++|+|..|...
T Consensus 209 d~~--------------~~~~~~~~l~~~-I~i~~~~~v~~i~~-~-~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~ 271 (460)
T PRK06292 209 DPE--------------VSKQAQKILSKE-FKIKLGAKVTSVEK-S-GDEKVEELEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred hHH--------------HHHHHHHHHhhc-cEEEcCCEEEEEEE-c-CCceEEEEEcCCceEEEEeCEEEEccCCccCCC
Confidence 000 011123446667 8988876655 321 1 112344422 2336799999999999988743
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0021 Score=75.15 Aligned_cols=100 Identities=16% Similarity=0.167 Sum_probs=75.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-----c------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-----V------------------------------------ 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-----~------------------------------------ 609 (866)
-+|+|||||+.|+-+|..|++.|.+|+++++.+.+... +
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 46999999999999999999999999999876432100 0
Q ss_pred ------------------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEecc
Q psy9583 610 ------------------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665 (866)
Q Consensus 610 ------------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D 665 (866)
-..+.+.+.+.+.+.|+++++++++++++.+++++.+.+...++ ..++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~-----~~~i~a~ 158 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAG-----EETVRAR 158 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCC-----eEEEEeC
Confidence 01123345566777899999999999999888887777643222 2379999
Q ss_pred EEEEeecccc
Q psy9583 666 KLLIAIGRIP 675 (866)
Q Consensus 666 ~vi~a~G~~p 675 (866)
.||.|.|...
T Consensus 159 ~vVgADG~~S 168 (502)
T PRK06184 159 YLVGADGGRS 168 (502)
T ss_pred EEEECCCCch
Confidence 9999999765
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00015 Score=84.29 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
..+.+.+.+.+++.|++|++++.|++|..+++.+ .+.+ .+|. ++.+|.||+++|...
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~--~~g~------~~~ad~vV~a~~~~~ 286 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKL--ADGE------KIYAKRIVSNATRWD 286 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEe--CCCC------EEEcCEEEECCChHH
Confidence 5678889999999999999999999998765543 3333 3554 789999999988643
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00048 Score=84.12 Aligned_cols=32 Identities=19% Similarity=0.499 Sum_probs=30.1
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~ 422 (866)
++|+||||||||+++|..|++. |++|+|+|+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~ 34 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERN 34 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 3699999999999999999998 8999999997
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00016 Score=84.13 Aligned_cols=61 Identities=8% Similarity=0.182 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeE-EEEEeeC-CCCccceeEEEeccEEEEeeccc
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENV-LINYSNK-STNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
-..+.+.+.+.+++.|++|++++.|++|..+++.. .+.+.++ ++. ..++.+|.||+++...
T Consensus 231 ~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~----~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 231 MQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQE----DLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCc----eEEEECCEEEECCCHH
Confidence 45688889999999999999999999998876643 2333321 111 1368899999998754
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0019 Score=72.92 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=73.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc------------------c-----------------c----
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------------------V-----------------D---- 610 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------------------~-----------------d---- 610 (866)
+.+|+|||||+.|+-+|..|++.|.+|+++++.+.+... + +
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~ 83 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVDA 83 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCCC
Confidence 568999999999999999999999999999986542110 0 0
Q ss_pred -------------------------HHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEec
Q psy9583 611 -------------------------EEIAKKAFHLLNKQ-GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIF 664 (866)
Q Consensus 611 -------------------------~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~ 664 (866)
.++.+.+.+.+.+. ++++++++.+++++.+++++.+.+. +|. ++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~--~g~------~~~a 155 (396)
T PRK08163 84 EEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQ--QGN------RWTG 155 (396)
T ss_pred CEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEc--CCC------EEec
Confidence 01122333444444 4999999999999877777666554 555 7899
Q ss_pred cEEEEeeccccCC
Q psy9583 665 DKLLIAIGRIPNT 677 (866)
Q Consensus 665 D~vi~a~G~~p~~ 677 (866)
|.||.|.|.....
T Consensus 156 d~vV~AdG~~S~~ 168 (396)
T PRK08163 156 DALIGCDGVKSVV 168 (396)
T ss_pred CEEEECCCcChHH
Confidence 9999999987654
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00015 Score=83.50 Aligned_cols=39 Identities=31% Similarity=0.450 Sum_probs=35.9
Q ss_pred ceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~ 436 (866)
+|+|||||+|||+||+.|++.| ++|+|+|+. +.+||.+.
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~------~~~GGr~~ 42 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEAS------DRLGGKIQ 42 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcC------CCCcceEE
Confidence 6999999999999999999987 899999998 78999763
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=75.47 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=76.8
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-----c------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-----T------------------------------------ 608 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-----~------------------------------------ 608 (866)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. .
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 35799999999999999999999999999987653210 0
Q ss_pred ----cc-----------------HHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccE
Q psy9583 609 ----VD-----------------EEIAKKAFHLLNK-QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 609 ----~d-----------------~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~ 666 (866)
++ +++.+.+.+.+.+ .|+++++++++++++.+++++.+++++.+|+ ..++.+|.
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~----~~~i~ad~ 165 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQ----RETVRARY 165 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCC----EEEEEEEE
Confidence 00 1122233344444 3899999999999999888888888643453 34799999
Q ss_pred EEEeeccccCC
Q psy9583 667 LLIAIGRIPNT 677 (866)
Q Consensus 667 vi~a~G~~p~~ 677 (866)
||-|.|.+...
T Consensus 166 vVgADG~~S~v 176 (538)
T PRK06183 166 VVGCDGANSFV 176 (538)
T ss_pred EEecCCCchhH
Confidence 99999986544
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00016 Score=84.30 Aligned_cols=42 Identities=33% Similarity=0.465 Sum_probs=38.5
Q ss_pred ccceeeecCCccHHHHHHHHHHC-CCeEEEEeccCCCcccccCCCccce
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~-g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
++||+|||||++||+||++|.+. |++|+|+|+. +.+||.+..
T Consensus 12 ~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~------~rvGGr~~t 54 (496)
T PLN02576 12 SKDVAVVGAGVSGLAAAYALASKHGVNVLVTEAR------DRVGGNITS 54 (496)
T ss_pred CCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecC------CCCCCceeE
Confidence 47899999999999999999999 9999999998 789998743
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00016 Score=82.72 Aligned_cols=56 Identities=14% Similarity=0.121 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
..+.+.+.+.+++.|++++++++|++|+.+++.+.+... ++. .+.+|.||+|++..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~--~~~------~~~ad~vI~a~p~~ 253 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGVEV--DGE------EEDFDAVISTAPPP 253 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCCceEEEEe--CCc------eEECCEEEECCCHH
Confidence 457788888899999999999999999987766544432 444 78999999999854
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0002 Score=83.50 Aligned_cols=44 Identities=25% Similarity=0.432 Sum_probs=38.7
Q ss_pred cccccceeeecCCccHHHHHHHHHHCC-----CeEEEEeccCCCcccccCCCccc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLG-----FKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g-----~~V~liek~~~~~~~~~~GG~~~ 436 (866)
|.+.+||+|||||++||+||.+|++.| ++|+|+|++ ..+||.+.
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~------~~~GGr~~ 50 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG------DRIGGRIN 50 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCC------CCcCCeEE
Confidence 445689999999999999999999887 899999998 67888764
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0019 Score=72.68 Aligned_cols=100 Identities=20% Similarity=0.295 Sum_probs=79.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecC-CcCCCc------------------c----------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS-SNFLNT------------------V---------------------- 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~-~~~l~~------------------~---------------------- 609 (866)
.+|+|||||+.|+-+|..|++.|.+|+++++. +.+.+. .
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~ 82 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR 82 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence 57999999999999999999999999999997 222110 0
Q ss_pred --------------------cHHHHHHHHHHHHHcC-CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEE
Q psy9583 610 --------------------DEEIAKKAFHLLNKQG-LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLL 668 (866)
Q Consensus 610 --------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi 668 (866)
-.++...+.+.+.+.+ |+++.++.|+.++.+++.+.+++.. +|+ +++||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~-dG~------~~~a~llV 155 (387)
T COG0654 83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSF-DGE------TLDADLLV 155 (387)
T ss_pred eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcC-CCc------EEecCEEE
Confidence 0334556667776665 9999999999999998888887765 675 89999999
Q ss_pred EeeccccCC
Q psy9583 669 IAIGRIPNT 677 (866)
Q Consensus 669 ~a~G~~p~~ 677 (866)
-|-|.....
T Consensus 156 gADG~~S~v 164 (387)
T COG0654 156 GADGANSAV 164 (387)
T ss_pred ECCCCchHH
Confidence 999976543
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00016 Score=83.53 Aligned_cols=41 Identities=22% Similarity=0.342 Sum_probs=37.9
Q ss_pred cceeeecCCccHHHHHHHHHHC----CCeEEEEeccCCCcccccCCCccce
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL----GFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~----g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
+||+|||||++||+||+.|++. |++|+|+|+. +.+||.|..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~------~r~GG~~~t 47 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEAS------DRVGGKIQT 47 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcC------CcCcceEEE
Confidence 7899999999999999999999 9999999998 789998743
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=72.63 Aligned_cols=98 Identities=17% Similarity=0.227 Sum_probs=74.6
Q ss_pred eEEEECCcHHHHHHHHHHHhcC--CcEEEEecCCcCCC------------------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFLN------------------------------------------ 607 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g--~~Vtli~~~~~~l~------------------------------------------ 607 (866)
+|+|||||+.|+-+|..|++.| .+|+++++.+...+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 89999987542100
Q ss_pred ----------cc---------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEE
Q psy9583 608 ----------TV---------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITS 662 (866)
Q Consensus 608 ----------~~---------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~ 662 (866)
.+ ...+.+.+.+.+.+.|++++.++++++++.+++.+.+.+. +|. ++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~--~g~------~~ 154 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLS--DGS------VL 154 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEEC--CCC------EE
Confidence 00 0223455556667789999999999999887777776664 555 78
Q ss_pred eccEEEEeeccccCC
Q psy9583 663 IFDKLLIAIGRIPNT 677 (866)
Q Consensus 663 ~~D~vi~a~G~~p~~ 677 (866)
.+|.||.|.|..+..
T Consensus 155 ~ad~vI~AdG~~S~v 169 (403)
T PRK07333 155 EARLLVAADGARSKL 169 (403)
T ss_pred EeCEEEEcCCCChHH
Confidence 999999999987653
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00093 Score=76.76 Aligned_cols=97 Identities=14% Similarity=0.197 Sum_probs=64.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..|++.|.+|++|++.+ .+... .
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~------~ll~~-----------------------------------~ 208 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST------KLLRH-----------------------------------L 208 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC------ccccc-----------------------------------c
Confidence 579999999999999999999999999999862 11000 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..++.. .+...+ +.+++++.+..+. +.. ....+.+...+++++.+|.|++|+|.+|..
T Consensus 209 d~~~~~--------------~l~~~~-~~gI~i~~~~~V~~i~~---~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 209 DEDISD--------------RFTEIA-KKKWDIRLGRNVTAVEQ---DGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred CHHHHH--------------HHHHHH-hcCCEEEeCCEEEEEEE---cCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 000000 011222 3578888776655 321 123355554556789999999999999874
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK01202 glycine cleavage system protein H; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00065 Score=62.63 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=47.6
Q ss_pred EEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeec---CCCEEe---cCC-EEEEEecC
Q psy9583 19 TLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT---DGSIVT---SNQ-VIALIDTD 80 (866)
Q Consensus 19 ~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~---~g~~v~---~g~-~l~~~~~~ 80 (866)
.-++| .++|++|++||+++.||++|+..+|.||.+|+|.++..+ ..+.+. -|+ -|+.+...
T Consensus 40 ~~v~l-p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~ln~~p~~~gWl~~v~~~ 107 (127)
T PRK01202 40 VFVEL-PEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPELVNEDPYGEGWLFKIKPS 107 (127)
T ss_pred eEEEc-CCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHhhcCCCCCCceEEEEEeC
Confidence 33454 367999999999999999999999999999999999544 334444 444 77777644
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00087 Score=76.09 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
|..+.-.......++|-++...++|+.+..+++.+-+.+.+.. .++..++.++.||-|+|--
T Consensus 163 daRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~v~gV~~~D~~---tg~~~~ira~~VVNAaGpW 224 (532)
T COG0578 163 DARLVAANARDAAEHGAEILTYTRVESLRREGGVWGVEVEDRE---TGETYEIRARAVVNAAGPW 224 (532)
T ss_pred hHHHHHHHHHHHHhcccchhhcceeeeeeecCCEEEEEEEecC---CCcEEEEEcCEEEECCCcc
Confidence 4456666677788899999999999999988874446655322 2236789999999999953
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0024 Score=72.12 Aligned_cols=98 Identities=21% Similarity=0.384 Sum_probs=72.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-------------------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------------------------------------------- 608 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------- 608 (866)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 6899999999999999999999999999876543110
Q ss_pred --cc-----------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEE
Q psy9583 609 --VD-----------------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLI 669 (866)
Q Consensus 609 --~d-----------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~ 669 (866)
++ .++...+.+.+ ..|+++++++++++++.+++++.+.+. +|. .+.+|.||.
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~--~g~------~~~~d~vIg 152 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFE--RGT------PRDFDLVIG 152 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEEC--CCC------EEEeCEEEE
Confidence 00 00111222222 347999999999999988877777665 665 678999999
Q ss_pred eeccccCCC
Q psy9583 670 AIGRIPNTN 678 (866)
Q Consensus 670 a~G~~p~~~ 678 (866)
|.|......
T Consensus 153 ADG~~S~vR 161 (391)
T PRK07588 153 ADGLHSHVR 161 (391)
T ss_pred CCCCCccch
Confidence 999876553
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0014 Score=74.47 Aligned_cols=99 Identities=16% Similarity=0.292 Sum_probs=73.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc----------CCC---ccc---------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN----------FLN---TVD--------------------------- 610 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~----------~l~---~~d--------------------------- 610 (866)
.+|+|||||+.|+-+|..|++.|.+|+++++.+. +.+ .+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999998651 000 000
Q ss_pred -----------------------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEE
Q psy9583 611 -----------------------------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIIT 661 (866)
Q Consensus 611 -----------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~ 661 (866)
..+.+.+.+.+++.|++++.++++++++.+++++.+.+. +|. +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~--~g~------~ 154 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLA--DGR------Q 154 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEEC--CCC------E
Confidence 011223344556678999999999999888777777664 555 7
Q ss_pred EeccEEEEeeccccCC
Q psy9583 662 SIFDKLLIAIGRIPNT 677 (866)
Q Consensus 662 ~~~D~vi~a~G~~p~~ 677 (866)
+.+|.||.|.|.....
T Consensus 155 ~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 155 LRAPLVVAADGANSAV 170 (405)
T ss_pred EEeCEEEEecCCCchh
Confidence 9999999999986644
|
|
| >PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00086 Score=75.60 Aligned_cols=66 Identities=21% Similarity=0.294 Sum_probs=58.0
Q ss_pred CeEEEEEEE-eCCCCeeeCCCeEEEEEec------------------------------------------------cee
Q psy9583 16 SEATLLNWH-KKEGELVVRNENLIDIETD------------------------------------------------KVI 46 (866)
Q Consensus 16 ~~g~i~~w~-~~~G~~v~~g~~l~~ve~~------------------------------------------------k~~ 46 (866)
.+|.|.+.+ +++||.|++||+|+++++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 469999998 9999999999999999831 013
Q ss_pred eEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 47 ~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
..|.||++|+|.+..+.+|+.|..|++|+.|....
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMD 244 (409)
T ss_pred EEEECCCCeEEEEEECCCCCEECCCCeEEEEEcCC
Confidence 57999999999999999999999999999997544
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=76.54 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=66.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..|++.|.+|+|+++. ..+.. +
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~------~~l~~-------------------------------~----- 220 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS------IPLRG-------------------------------F----- 220 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC------ccccc-------------------------------C-----
Confidence 47999999999999999999999999999863 10000 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
+.+. ...+...+++.||+++.+..+. +.. ....+.+...+++++.+|.|++|+|..|..
T Consensus 221 d~~~--------------~~~l~~~l~~~GV~i~~~~~v~~v~~---~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 221 DRQC--------------SEKVVEYMKEQGTLFLEGVVPINIEK---MDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred CHHH--------------HHHHHHHHHHcCCEEEcCCeEEEEEE---cCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 0000 1113445778899999887654 321 112334444456779999999999999873
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00022 Score=81.76 Aligned_cols=40 Identities=33% Similarity=0.473 Sum_probs=36.9
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
.+|+|||||.|||+||+.|.+.|++|+|+|+. +++||.+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~------~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESR------DRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC------CCCCceee
Confidence 36999999999999999999999999999998 78999763
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=75.42 Aligned_cols=97 Identities=12% Similarity=0.225 Sum_probs=67.0
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||+|+.|+..|..|++.|.+|+|+++.+ .+. |.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~------~~l---------~~--------------------------- 196 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAAS------LFL---------PR--------------------------- 196 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC------CCC---------CC---------------------------
Confidence 579999999999999999999999999999862 110 00
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.+ . .+...+...+++.||+++.+..+. +.. ....+.+..+++ ++.+|.|++|+|..|..
T Consensus 197 -~~-~-----------~~~~~l~~~l~~~gV~v~~~~~v~~i~~---~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 197 -ED-R-----------DIADNIATILRDQGVDIILNAHVERISH---HENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred -cC-H-----------HHHHHHHHHHHhCCCEEEeCCEEEEEEE---cCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 00 0 001113445778899999887655 322 223455554444 58999999999999874
|
|
| >KOG2614|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0017 Score=70.24 Aligned_cols=34 Identities=18% Similarity=0.440 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
+.+|+|||||.+|+++|..|.++|++|+|+|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecc
Confidence 3689999999999999999999999999999974
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00097 Score=76.24 Aligned_cols=91 Identities=14% Similarity=0.303 Sum_probs=66.0
Q ss_pred CCCeEEEECCcHHHHHHHHHHHh--cCCcEEEEecCCcCCCc----------ccHHHHHHHHHHHHHcCCEEEeCceEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRR--LGSEVTILEMSSNFLNT----------VDEEIAKKAFHLLNKQGLNIILNTKIHD 636 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~--~g~~Vtli~~~~~~l~~----------~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 636 (866)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+... ....+...+.+.+...+|+++.+..+-.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg~ 104 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLGR 104 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEECc
Confidence 46899999999999999999987 79999999998876421 1123444566677888999988766521
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.+++. +- ...+|.||+|+|..+.
T Consensus 105 --------dvtl~--~L-------~~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 105 --------DVSLS--EL-------RDLYHVVVLAYGAESD 127 (491)
T ss_pred --------cccHH--HH-------hhhCCEEEEecCCCCC
Confidence 12222 11 3468999999998764
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00021 Score=83.42 Aligned_cols=56 Identities=11% Similarity=0.089 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
..+.+.+.+.+++.|+++++++.|++|..+++.+ .+.+ .+|. ++.+|.||++++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~--~~g~------~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHL--ADGE------RLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEE--CCCC------EEECCEEEECCcHH
Confidence 5678888899999999999999999998766553 3433 3555 78999999998864
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0015 Score=75.30 Aligned_cols=100 Identities=19% Similarity=0.292 Sum_probs=65.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..+++.|.+|+|||+.+ .+. |. .
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~------~il---------~~---------------------~----- 213 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD------RIC---------PG---------------------T----- 213 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC------CCC---------CC---------------------C-----
Confidence 679999999999999999999999999999862 110 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-C--CceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-K--TKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~--~g~~i~~d~lViATGs~p~~ 546 (866)
..+. ...+...+++.||+++.++.+. +.. +.+...+.+.. . ++..+.+|.|++|+|..|..
T Consensus 214 d~~~--------------~~~l~~~l~~~gV~i~~~~~V~~i~~-~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 278 (466)
T PRK06115 214 DTET--------------AKTLQKALTKQGMKFKLGSKVTGATA-GADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYT 278 (466)
T ss_pred CHHH--------------HHHHHHHHHhcCCEEEECcEEEEEEE-cCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccc
Confidence 0000 0112345677899999887665 321 11112233332 1 23679999999999998863
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0031 Score=70.57 Aligned_cols=99 Identities=19% Similarity=0.300 Sum_probs=72.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---cc--c-------------HHH-------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---TV--D-------------EEI------------------- 613 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---~~--d-------------~~~------------------- 613 (866)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+.. .. . +.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4799999999999999999999999999987654311 00 0 000
Q ss_pred ----------------------HHHHHHHHH---HcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEE
Q psy9583 614 ----------------------AKKAFHLLN---KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLL 668 (866)
Q Consensus 614 ----------------------~~~l~~~l~---~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi 668 (866)
...+.+.|. ..|+++++++++++++.+++++.+++. +|. ++.+|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~--dg~------~~~adlvI 153 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFE--RAA------AREFDLVI 153 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEEC--CCC------eEEeCEEE
Confidence 112223332 357899999999999877777777775 565 78999999
Q ss_pred EeeccccCC
Q psy9583 669 IAIGRIPNT 677 (866)
Q Consensus 669 ~a~G~~p~~ 677 (866)
-|-|.+...
T Consensus 154 gADG~~S~v 162 (372)
T PRK05868 154 GADGLHSNV 162 (372)
T ss_pred ECCCCCchH
Confidence 999987655
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0036 Score=70.89 Aligned_cols=102 Identities=18% Similarity=0.201 Sum_probs=74.4
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc------------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------------------------------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 608 (866)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 68999999999999999999999999999876532100
Q ss_pred --c--------------------cHHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEecc
Q psy9583 609 --V--------------------DEEIAKKAFHLLNK-QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665 (866)
Q Consensus 609 --~--------------------d~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D 665 (866)
+ -.++.+.+.+.+.+ .|+++++++++++++.+++++.+++...++. ..+.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~-----~~~~ad 157 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSV-----ETVSAA 157 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCC-----cEEecC
Confidence 0 01122333344444 4799999999999988777887777543332 368999
Q ss_pred EEEEeeccccCC
Q psy9583 666 KLLIAIGRIPNT 677 (866)
Q Consensus 666 ~vi~a~G~~p~~ 677 (866)
+||-|-|.....
T Consensus 158 lvIgADG~~S~v 169 (400)
T PRK06475 158 YLIACDGVWSML 169 (400)
T ss_pred EEEECCCccHhH
Confidence 999999987644
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0027 Score=70.78 Aligned_cols=95 Identities=20% Similarity=0.224 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhcCCcEEEEecCCcCCC---cccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--C-eE--EEEEeeC
Q psy9583 580 VIGLEIGSIWRRLGSEVTILEMSSNFLN---TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK--E-NV--LINYSNK 651 (866)
Q Consensus 580 ~~glE~A~~l~~~g~~Vtli~~~~~~l~---~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~-~~--~v~~~~~ 651 (866)
.+++|+-.+|.++=.++.=+..-..+.. .--+.+...+.+.|+++||+|+++++|+.+.-+. + .. .+.+. .
T Consensus 173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~-~ 251 (500)
T PF06100_consen 173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIE-Q 251 (500)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEE-c
Confidence 5789999888887333221111111111 1235677889999999999999999999987642 2 11 23333 2
Q ss_pred CCCccceeEEEeccEEEEeeccccC
Q psy9583 652 STNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 652 ~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
+|.. .....-+-|.|++..|..-.
T Consensus 252 ~g~~-~~i~l~~~DlV~vT~GS~t~ 275 (500)
T PF06100_consen 252 DGKE-ETIDLGPDDLVFVTNGSMTE 275 (500)
T ss_pred CCCe-eEEEeCCCCEEEEECCcccc
Confidence 3331 11112245788888886543
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00074 Score=77.63 Aligned_cols=94 Identities=24% Similarity=0.353 Sum_probs=68.4
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------Cc--ccH-HHHHHHHHHHHHcCCEEEeCceEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------NT--VDE-EIAKKAFHLLNKQGLNIILNTKIHDIK 638 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------~~--~d~-~~~~~l~~~l~~~GV~i~~~~~v~~i~ 638 (866)
.+++|+|||+|+.|+.+|..|+++|.+|+++++.+.+. +. ++. ++.....+.+++.|+++++++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v~~-- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVVVGK-- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEcCCEECC--
Confidence 46899999999999999999999999999999876532 11 222 3666667788899999999986621
Q ss_pred EcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc-ccCC
Q psy9583 639 INKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR-IPNT 677 (866)
Q Consensus 639 ~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~-~p~~ 677 (866)
.+.+. +.. ..+.+|.|++|+|. .|..
T Consensus 217 ------~v~~~--~~~-----~~~~~d~viiAtGa~~~~~ 243 (464)
T PRK12831 217 ------TVTID--ELL-----EEEGFDAVFIGSGAGLPKF 243 (464)
T ss_pred ------cCCHH--HHH-----hccCCCEEEEeCCCCCCCC
Confidence 11221 111 13568999999997 5654
|
|
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0012 Score=71.06 Aligned_cols=96 Identities=22% Similarity=0.284 Sum_probs=69.1
Q ss_pred cceeeecCCccHHHHHHHHHHC--------------CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHH
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--------------GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENV 456 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--------------g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~ 456 (866)
-.+|||||||.|...|.+|+.. ..+|+|+|..+ . ....
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d------~---------------------iL~m- 270 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD------H---------------------ILNM- 270 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch------h---------------------HHHH-
Confidence 5799999999999999999843 35788998751 0 0000
Q ss_pred hhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc--eEEEe
Q psy9583 457 KNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK--ETITA 533 (866)
Q Consensus 457 ~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g--~~i~~ 533 (866)
+-+++....+..+.+.+|++..++.+. +.. ..+.+.+.+| +.++|
T Consensus 271 ---------------------------Fdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~-----~~I~~~~~~g~~~~iPY 318 (491)
T KOG2495|consen 271 ---------------------------FDKRLVEYAENQFVRDGIDLDTGTMVKKVTE-----KTIHAKTKDGEIEEIPY 318 (491)
T ss_pred ---------------------------HHHHHHHHHHHHhhhccceeecccEEEeecC-----cEEEEEcCCCceeeecc
Confidence 011223335667888999999998776 444 6677766555 78999
Q ss_pred cEEEEecCCCCcC
Q psy9583 534 KYIIIATGSKARS 546 (866)
Q Consensus 534 d~lViATGs~p~~ 546 (866)
--||.|||..|+.
T Consensus 319 G~lVWatG~~~rp 331 (491)
T KOG2495|consen 319 GLLVWATGNGPRP 331 (491)
T ss_pred eEEEecCCCCCch
Confidence 9999999988773
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0019 Score=74.79 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=66.0
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..|++.|.+|+|+++. ..+ |.
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~------~~l----------~~--------------------------- 225 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARS------TLL----------FR--------------------------- 225 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC------CCC----------Cc---------------------------
Confidence 57999999999999999999999999999864 111 00
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.+ . .+...+...+++.||+++.+..+. +.. ....+.+..+++ ++.+|.+|+|+|..|..
T Consensus 226 -~d--~----------~~~~~l~~~L~~~GV~i~~~~~V~~i~~---~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 226 -ED--P----------LLGETLTACFEKEGIEVLNNTQASLVEH---DDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred -ch--H----------HHHHHHHHHHHhCCCEEEcCcEEEEEEE---eCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 00 0 001123445778899999887665 321 123455554444 58999999999999874
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0018 Score=76.81 Aligned_cols=96 Identities=15% Similarity=0.155 Sum_probs=66.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+||++. ..+ |. .
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~------~~l----------~~--------------------------~ 308 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARS------TLF----------FR--------------------------E 308 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecC------ccc----------cc--------------------------c
Confidence 57999999999999999999999999999874 111 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
+.++ ...+...+++.||+++.+..+. +.. ....+.+..+++ .+.+|.|++|+|..|..
T Consensus 309 d~~~--------------~~~l~~~l~~~gI~i~~~~~v~~i~~---~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 309 DPAI--------------GEAVTAAFRAEGIEVLEHTQASQVAH---VDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred CHHH--------------HHHHHHHHHHCCCEEEcCCEEEEEEe---cCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 0000 1113445678899999887665 321 223455544444 69999999999999874
|
|
| >KOG2311|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0013 Score=71.56 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=31.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.|||||||||.||+.||..+++.|.+.+|+..+
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 699999999999999999999999999999875
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0071 Score=68.20 Aligned_cols=141 Identities=21% Similarity=0.274 Sum_probs=94.0
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc----------------------------------------
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT---------------------------------------- 608 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~---------------------------------------- 608 (866)
..++++|||+|++|+-.|..|.+.|.++++++|.+.+...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 3689999999999999999999999999999987654210
Q ss_pred --cc-HHHHHHHHHHHHHcCC--EEEeCceEEEEEEcC-CeEEEEEeeCCCCccceeEEEeccEEEEeeccc--cCCCCC
Q psy9583 609 --VD-EEIAKKAFHLLNKQGL--NIILNTKIHDIKINK-ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI--PNTNNL 680 (866)
Q Consensus 609 --~d-~~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~--p~~~~l 680 (866)
.+ .++.++++...+.-++ .+.+++.+.++.... +.+.+......+. .....+|.|++|+|.- |+.+..
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~----~~~~ifd~VvVctGh~~~P~~P~~ 160 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ----IEEEIFDAVVVCTGHYVEPRIPQI 160 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcc----eeEEEeeEEEEcccCcCCCCCCcC
Confidence 01 2556666666666665 577889888888877 6788877643331 2478899999999976 555442
Q ss_pred CccccCeeecCCCcEE-eCCCCCC---CCCCEEEecccCC
Q psy9583 681 NIDKIGLKVNENNFII-VNDNCET---NIPNIYAIGDVVR 716 (866)
Q Consensus 681 ~l~~~gl~~~~~G~i~-Vd~~l~T---s~~~VyA~GD~a~ 716 (866)
+..+++.= .|.+. .-++... ..+.|-.+|--.+
T Consensus 161 --~g~~~~~f-~G~~iHS~~Yk~~e~f~~k~VlVIG~g~S 197 (448)
T KOG1399|consen 161 --PGPGIESF-KGKIIHSHDYKSPEKFRDKVVLVVGCGNS 197 (448)
T ss_pred --CCCchhhc-CCcceehhhccCcccccCceEEEECCCcc
Confidence 22122111 23222 2222221 3477888985443
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0021 Score=75.28 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=65.8
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..+++.|.+|+++++.+ .+. |. +
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~------~il---------~~---------------------~----- 276 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGN------RLL---------RK---------------------F----- 276 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc------ccc---------cc---------------------C-----
Confidence 679999999999999999999999999999862 110 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCceEEEecEEEEecCCCCc
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g~~i~~d~lViATGs~p~ 545 (866)
+.+. ...+...+++.||+++.+..+. +.. + ....+.+.. +++.++.+|.|++|+|..|.
T Consensus 277 d~~i--------------~~~l~~~L~~~GV~i~~~~~V~~I~~-~-~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 277 DETI--------------INELENDMKKNNINIITHANVEEIEK-V-KEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred CHHH--------------HHHHHHHHHHCCCEEEeCCEEEEEEe-c-CCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 0000 0112345677899999887655 321 1 112233332 33467999999999998887
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0013 Score=75.99 Aligned_cols=89 Identities=27% Similarity=0.452 Sum_probs=69.2
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------C--cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------N--TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------~--~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+++. + .++.++.....+.+++.||++++++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~-- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVD-- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCc--
Confidence 35799999999999999999999999999999887652 2 235667777778889999999999887310
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
+.. +. ....+|.|++|+|..
T Consensus 220 ------~~~---~~------~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 ------ISA---DE------LKEQFDAVVLAGGAT 239 (485)
T ss_pred ------cCH---HH------HHhhCCEEEEccCCC
Confidence 100 11 135689999999987
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0009 Score=72.51 Aligned_cols=65 Identities=15% Similarity=0.294 Sum_probs=57.4
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecc---------------------------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDK--------------------------------------------------- 44 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k--------------------------------------------------- 44 (866)
..|+|.+++|++||.|++||+|+++++..
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999999998621
Q ss_pred -------------------eeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 45 -------------------VILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 45 -------------------~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
....|.||++|+|.++.+++|+.|.+|++|+.+...
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEFITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCEecCCCeeEEEEeC
Confidence 024699999999999999999999999999988654
|
|
| >TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A) | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.001 Score=73.33 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=32.2
Q ss_pred eEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 47 ~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
..|.||.+|+|..+.+++|+.|..|++|+.|....
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQVVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCCEeCCCCeeEEEEcCC
Confidence 47999999999999999999999999999998653
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=75.48 Aligned_cols=90 Identities=20% Similarity=0.440 Sum_probs=68.8
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .++.++.....+.+.+.|+++++++.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 218 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGK--- 218 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECC---
Confidence 467999999999999999999999999999999876532 23556666677788999999999987631
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
. +.. +. ....+|.|++|+|..+
T Consensus 219 -~----~~~---~~------~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 219 -D----ITA---EE------LLAEYDAVFLGTGAYK 240 (471)
T ss_pred -c----CCH---HH------HHhhCCEEEEecCCCC
Confidence 0 111 11 1346899999999973
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0011 Score=82.98 Aligned_cols=94 Identities=21% Similarity=0.284 Sum_probs=70.4
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. .++.++.....+.+++.||++++++.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg---- 504 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIG---- 504 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccC----
Confidence 368999999999999999999999999999998775521 2367788888889999999999987541
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc-cCC
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI-PNT 677 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~-p~~ 677 (866)
.. +++..-. ....+|.||+|||.. |..
T Consensus 505 --~~--~~~~~l~-------~~~~yDaViIATGa~~pr~ 532 (1006)
T PRK12775 505 --KT--FTVPQLM-------NDKGFDAVFLGVGAGAPTF 532 (1006)
T ss_pred --Cc--cCHHHHh-------hccCCCEEEEecCCCCCCC
Confidence 11 1221000 023589999999984 544
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0042 Score=70.01 Aligned_cols=98 Identities=13% Similarity=0.198 Sum_probs=73.7
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------------------cc--------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------------------TV-------------------- 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------------------~~-------------------- 609 (866)
-+|+|||||+.|+-+|..|++.|.+|+++++.+.... .+
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4699999999999999999999999999998755311 00
Q ss_pred ------------------------cHHHHHHHHHHHHHcC-CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEec
Q psy9583 610 ------------------------DEEIAKKAFHLLNKQG-LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIF 664 (866)
Q Consensus 610 ------------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~ 664 (866)
...+.+.+.+.+++.| ++++ ++++++++.+++.+.+++. +|. ++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~~v~~~--~g~------~~~a 156 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF-PARAQGLEVDPDAATLTLA--DGQ------VLRA 156 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeEEEEEC--CCC------EEEe
Confidence 0122334445566676 8888 9999999877777766654 554 7999
Q ss_pred cEEEEeeccccCC
Q psy9583 665 DKLLIAIGRIPNT 677 (866)
Q Consensus 665 D~vi~a~G~~p~~ 677 (866)
|.||.|.|.....
T Consensus 157 ~~vI~adG~~S~v 169 (388)
T PRK07608 157 DLVVGADGAHSWV 169 (388)
T ss_pred eEEEEeCCCCchH
Confidence 9999999986543
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0024 Score=71.99 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=61.5
Q ss_pred CCCeEEEECCcHHHHHHHHHHH-hcCCcEEEEecCCcCCCc----c---c---HHHHHHHHHHHHHcCCEEEeCceEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWR-RLGSEVTILEMSSNFLNT----V---D---EEIAKKAFHLLNKQGLNIILNTKIHDI 637 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~-~~g~~Vtli~~~~~~l~~----~---d---~~~~~~l~~~l~~~GV~i~~~~~v~~i 637 (866)
.+++|+|||+|+.|+.+|..|. +.|.+|+++++.+.+... . . ..+...+.+.+...+++++.+..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG~- 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVGV- 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEecC-
Confidence 4789999999999999999764 679999999999877421 1 1 23444455556667888875444311
Q ss_pred EEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 638 KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 638 ~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.++++ .....+|.||+|+|..+.
T Consensus 117 -------Dvt~e---------eL~~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 -------DLKME---------ELRNHYNCVIFCCGASEV 139 (506)
T ss_pred -------ccCHH---------HHHhcCCEEEEEcCCCCC
Confidence 01111 112368999999998753
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0049 Score=68.22 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 614 AKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 614 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
...+.+.+++.|++++.+++|+++..+++.+. +.+. +| .+.+|.||+|+|.....
T Consensus 150 ~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~--~g-------~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 150 IQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTS--DG-------EIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEET--TE-------EEEECEEEE--GGGHHH
T ss_pred hhhhHHHHHHhhhhccccccccchhhccccccccccc--cc-------ccccceeEeccccccee
Confidence 34444666778999999999999999888876 6553 44 59999999999975443
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0043 Score=69.70 Aligned_cols=96 Identities=18% Similarity=0.325 Sum_probs=71.8
Q ss_pred eEEEECCcHHHHHHHHHHHhcC-CcEEEEecCCcCCC---------ccc-------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLG-SEVTILEMSSNFLN---------TVD------------------------------- 610 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g-~~Vtli~~~~~~l~---------~~d------------------------------- 610 (866)
.|+|||||+.|+-+|..|++.| .+|+++++.+.... .+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 4899999999999999999999 99999987643210 000
Q ss_pred ------------------------HHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEecc
Q psy9583 611 ------------------------EEIAKKAFHLLNK-QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665 (866)
Q Consensus 611 ------------------------~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D 665 (866)
..+.+.+.+.+.+ .|++++.+++++++..+++++.+.+. +|. ++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~--~g~------~~~ad 152 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLD--NGQ------QLRAK 152 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEEC--CCC------EEEee
Confidence 1123333444555 48999999999999887777776654 554 78999
Q ss_pred EEEEeecccc
Q psy9583 666 KLLIAIGRIP 675 (866)
Q Consensus 666 ~vi~a~G~~p 675 (866)
.||.|.|...
T Consensus 153 ~vV~AdG~~S 162 (382)
T TIGR01984 153 LLIAADGANS 162 (382)
T ss_pred EEEEecCCCh
Confidence 9999999764
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0015 Score=72.05 Aligned_cols=100 Identities=24% Similarity=0.384 Sum_probs=75.8
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcC--CcEEEEecCCcCCC-cc----------cHHHHHHHHHHHHHcC-CEEEeCceEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFLN-TV----------DEEIAKKAFHLLNKQG-LNIILNTKIH 635 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g--~~Vtli~~~~~~l~-~~----------d~~~~~~l~~~l~~~G-V~i~~~~~v~ 635 (866)
.++++|+|||+-|+.++..|.+.- .+|+++++++..+- .+ +.++...+.+.++..+ |+++. .+|+
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~-~~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQ-GEVT 81 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEE-EEEE
Confidence 578999999999999999999874 88999999987652 11 3455666777777555 88774 5677
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL 680 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l 680 (866)
+|..++.. |.+. ++. .+.+|.+|+|+|..++....
T Consensus 82 ~ID~~~k~--V~~~--~~~------~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDRDAKK--VTLA--DLG------EISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EEcccCCE--EEeC--CCc------cccccEEEEecCCcCCcCCC
Confidence 77766544 3343 333 79999999999999988653
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.005 Score=69.51 Aligned_cols=100 Identities=18% Similarity=0.339 Sum_probs=73.0
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC---C---c------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL---N---T------------------------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l---~---~------------------------------------ 608 (866)
-+|+|||||+.|+-+|..|++.|.+|+++++.+... + .
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999999865310 0 0
Q ss_pred ---------cc---------------HHHHHHHHHHH-HHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEe
Q psy9583 609 ---------VD---------------EEIAKKAFHLL-NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663 (866)
Q Consensus 609 ---------~d---------------~~~~~~l~~~l-~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~ 663 (866)
++ ..+.+.+.+.+ +..|++++.++++++++.+++.+.+.+. +|. ++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~--~g~------~~~ 155 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLA--NGR------RLT 155 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEc--CCC------EEE
Confidence 00 00112222333 3468999999999999887777666664 555 799
Q ss_pred ccEEEEeeccccCCC
Q psy9583 664 FDKLLIAIGRIPNTN 678 (866)
Q Consensus 664 ~D~vi~a~G~~p~~~ 678 (866)
+|.||.|.|..+...
T Consensus 156 a~~vI~AdG~~S~vr 170 (392)
T PRK09126 156 ARLLVAADSRFSATR 170 (392)
T ss_pred eCEEEEeCCCCchhh
Confidence 999999999876653
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0021 Score=74.18 Aligned_cols=99 Identities=11% Similarity=0.056 Sum_probs=64.9
Q ss_pred cceeeecCCccHHHHHHHHHHC---CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL---GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~---g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
.+++|||||+.|+.+|..+... |.+|+||++.+ .+... +
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~------~il~~------------------------------~-- 229 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN------MILRG------------------------------F-- 229 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC------ccccc------------------------------c--
Confidence 6799999999999999766554 99999999862 21000 0
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
+.+ +.+.+...+++.||+++.+..+. +.. + ......+...++.++.+|.+++|+|..|..
T Consensus 230 ---d~~--------------~~~~l~~~L~~~GI~i~~~~~v~~i~~-~-~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 230 ---DST--------------LRKELTKQLRANGINIMTNENPAKVTL-N-ADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred ---CHH--------------HHHHHHHHHHHcCCEEEcCCEEEEEEE-c-CCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 000 11123445777899999987655 321 1 112233433456689999999999998874
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.005 Score=71.27 Aligned_cols=97 Identities=23% Similarity=0.277 Sum_probs=73.5
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---c---------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---T--------------------------------------- 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---~--------------------------------------- 608 (866)
-.|+|||+|++|+-+|..|++.|.+|.++++.+.... .
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 4699999999999999999999999999987643210 0
Q ss_pred ---------cc------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEE
Q psy9583 609 ---------VD------------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKL 667 (866)
Q Consensus 609 ---------~d------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~v 667 (866)
++ ..+...+.+.+++.|++++.++++++++.+++++.+.+. +|. ++.++.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~--~g~------~v~a~~v 157 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLS--NGE------RIQSRYV 157 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEEC--CCc------EEEeCEE
Confidence 00 112223445567789999999999999988877766653 454 7899999
Q ss_pred EEeecccc
Q psy9583 668 LIAIGRIP 675 (866)
Q Consensus 668 i~a~G~~p 675 (866)
|.|.|.+.
T Consensus 158 VgADG~~S 165 (487)
T PRK07190 158 IGADGSRS 165 (487)
T ss_pred EECCCCCH
Confidence 99999865
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0055 Score=69.04 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=71.0
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC--c---c------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN--T---V------------------------------------ 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~--~---~------------------------------------ 609 (866)
-+|+|||||+.|+-+|..|++.|.+|+++++.+.+.. . +
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 4799999999999999999999999999987654310 0 0
Q ss_pred ------------c-------HHHHHHHHHHHH-HcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEE
Q psy9583 610 ------------D-------EEIAKKAFHLLN-KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLI 669 (866)
Q Consensus 610 ------------d-------~~~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~ 669 (866)
. .++.+.+.+.+. ..|++++++++++.++.++++..+.+...+|+ ++.+|.||.
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~------~~~~~~vIg 159 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGE------RVAPTVLVG 159 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCC------EEECCEEEE
Confidence 0 012222333333 24799999999999988765543233333565 789999999
Q ss_pred eeccccCC
Q psy9583 670 AIGRIPNT 677 (866)
Q Consensus 670 a~G~~p~~ 677 (866)
|.|.....
T Consensus 160 ADG~~S~v 167 (388)
T PRK07045 160 ADGARSMI 167 (388)
T ss_pred CCCCChHH
Confidence 99987644
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00041 Score=79.95 Aligned_cols=39 Identities=28% Similarity=0.438 Sum_probs=36.0
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
+|+|||||++||+||..|++.|++|+|+|+. +.+||.|.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~------~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEAR------DVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecC------CCCCCCcc
Confidence 5899999999999999999999999999998 78899763
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PF13533 Biotin_lipoyl_2: Biotin-lipoyl like | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.001 Score=50.41 Aligned_cols=35 Identities=20% Similarity=0.517 Sum_probs=31.4
Q ss_pred eeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 46 ILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 46 ~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
++.|.||.+|+|.++++++|+.|+.|++|+.++..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~~VkkGd~L~~ld~~ 36 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQQVKKGDVLLVLDSP 36 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCCEEcCCCEEEEECcH
Confidence 36789999999999999999999999999999854
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0051 Score=67.64 Aligned_cols=94 Identities=20% Similarity=0.333 Sum_probs=64.9
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEec-CCcCCC-------------------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEM-SSNFLN------------------------------------------- 607 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~-~~~~l~------------------------------------------- 607 (866)
.|+|||||..|+|.|..+++.|.+|.++.. .+.+..
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 489999999999999999999999999932 222110
Q ss_pred ----------ccc-HHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 608 ----------TVD-EEIAKKAFHLLNK-QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 608 ----------~~d-~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
..| ..+...+.+.|++ .+++++ ...|+++..+++.+.-... .+|. .+.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~~v~GV~~-~~g~------~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENGKVKGVVT-KDGE------EIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTTEEEEEEE-TTSE------EEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCCeEEEEEe-CCCC------EEecCEEEEeccc
Confidence 011 2335555666766 678886 5789999887776654333 4665 8999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >TIGR00527 gcvH glycine cleavage system H protein | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00073 Score=62.26 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=37.4
Q ss_pred eCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC
Q psy9583 25 KKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS 66 (866)
Q Consensus 25 ~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~ 66 (866)
.++|+.|++||+++.||++|+..+|.||.+|+|.++.-..-+
T Consensus 44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~ 85 (127)
T TIGR00527 44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED 85 (127)
T ss_pred CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence 368999999999999999999999999999999988755443
|
The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0018 Score=77.60 Aligned_cols=91 Identities=25% Similarity=0.458 Sum_probs=70.8
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
.+++|+|||+|+.|+..|..|++.|.+|+++++.+.+.. .++.++.+...+.+++.||++++++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR--- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCC---
Confidence 468999999999999999999999999999999886531 25677777777889999999999987631
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.+.+. + ....+|.|++|+|..+.
T Consensus 386 -----~~~~~--~-------l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 -----DITFS--D-------LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred -----cCCHH--H-------HHhcCCEEEEeCCCCCC
Confidence 01121 1 13458999999998653
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0054 Score=68.96 Aligned_cols=97 Identities=13% Similarity=0.281 Sum_probs=72.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC--------C--ccc-------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL--------N--TVD------------------------------- 610 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l--------~--~~d------------------------------- 610 (866)
.|+|||+|+.|+-+|..|++.|.+|+++++.+... . .+.
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 48999999999999999999999999999885320 0 000
Q ss_pred -------------------------HHHHHHHHHHHHHcC-CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEec
Q psy9583 611 -------------------------EEIAKKAFHLLNKQG-LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIF 664 (866)
Q Consensus 611 -------------------------~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~ 664 (866)
..+.+.+.+.+.+.| ++++.+++|++++.+++++.+.+. +|. ++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~--~g~------~~~~ 152 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLD--DGQ------QLRA 152 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEEC--CCC------EEEe
Confidence 112233444555666 899999999999887777766554 565 7899
Q ss_pred cEEEEeeccccC
Q psy9583 665 DKLLIAIGRIPN 676 (866)
Q Consensus 665 D~vi~a~G~~p~ 676 (866)
|.||.|.|....
T Consensus 153 ~~vi~adG~~S~ 164 (385)
T TIGR01988 153 RLLVGADGANSK 164 (385)
T ss_pred eEEEEeCCCCCH
Confidence 999999997654
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00043 Score=80.03 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=36.2
Q ss_pred cceeeecCCccHHHHHHHHHHC------CCeEEEEeccCCCcccccCCCccce
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL------GFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~------g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
++|+|||||++||+||+.|++. |++|+|+|+. +++||.+..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~------~r~GGr~~T 48 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKE------EYLGGKIHS 48 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecC------CCccceEEE
Confidence 5699999999999999999986 3799999998 789998743
|
|
| >TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.002 Score=76.00 Aligned_cols=47 Identities=15% Similarity=0.052 Sum_probs=34.5
Q ss_pred CCcEEeCCCCC---------CCCCCEEEecccCC-C-C---C----cHHHHHHHHHHHHHHHhCC
Q psy9583 692 NNFIIVNDNCE---------TNIPNIYAIGDVVR-G-P---M----LAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 692 ~G~i~Vd~~l~---------Ts~~~VyA~GD~a~-~-~---~----~~~~A~~~g~~aa~~i~g~ 738 (866)
.|.|.+|...| |++||+||+|+|++ + . . ....|+-.|++|+++++..
T Consensus 331 ~GGi~id~~g~vl~~~~~~~t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa~~ 395 (565)
T TIGR01816 331 MGGIPTNYHGQVLRDGNGNDQIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEY 395 (565)
T ss_pred cCCceeCCCceEcccccCCCCccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 46677777666 68999999999974 2 1 1 3456778899999998653
|
coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase. |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0067 Score=69.18 Aligned_cols=97 Identities=14% Similarity=0.188 Sum_probs=70.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC------------------cc-----------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN------------------TV----------------------- 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~------------------~~----------------------- 609 (866)
-.|+|||||+.|+-+|..|++.|.+|.++++.+.... .+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 3699999999999999999999999999988643210 00
Q ss_pred ---------------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEE
Q psy9583 610 ---------------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLL 668 (866)
Q Consensus 610 ---------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi 668 (866)
-..+-+.+.+..++.|++++.++.|+++..+++.+..... ++. ++.+|.||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~--~g~------~i~A~~VI 157 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEA--DGD------VIEAKTVI 157 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEc--CCc------EEECCEEE
Confidence 0111233555666789999999999998876655433222 444 78999999
Q ss_pred Eeecccc
Q psy9583 669 IAIGRIP 675 (866)
Q Consensus 669 ~a~G~~p 675 (866)
.|+|...
T Consensus 158 ~A~G~~s 164 (428)
T PRK10157 158 LADGVNS 164 (428)
T ss_pred EEeCCCH
Confidence 9999753
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0057 Score=68.49 Aligned_cols=98 Identities=20% Similarity=0.383 Sum_probs=70.7
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-----cccHHH---------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-----TVDEEI--------------------------------- 613 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-----~~d~~~--------------------------------- 613 (866)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.. .+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 699999999999999999999999999998765321 001110
Q ss_pred ---------------HHHHHHHHHHc--CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 614 ---------------AKKAFHLLNKQ--GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 614 ---------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
...+.+.|.+. +.++++++++++++.+++++.+++. +|. .+.+|+||.|-|....
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g~------~~~~~~vigadG~~S~ 153 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFA--DGE------SEAFDLCIGADGIHSK 153 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEEC--CCC------EEecCEEEECCCcchH
Confidence 11122333221 3568899999999887777777664 565 7899999999997654
Q ss_pred C
Q psy9583 677 T 677 (866)
Q Consensus 677 ~ 677 (866)
.
T Consensus 154 v 154 (373)
T PRK06753 154 V 154 (373)
T ss_pred H
Confidence 4
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=80.06 Aligned_cols=93 Identities=24% Similarity=0.345 Sum_probs=69.7
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------C--cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------N--TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------~--~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.....+.+++.||+|++++.+.
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~---- 505 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVG---- 505 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEC----
Confidence 46899999999999999999999999999999865432 1 2356667777788899999999987651
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeecc-ccCC
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR-IPNT 677 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~-~p~~ 677 (866)
. .+++. +. ....+|.|++|+|. .|..
T Consensus 506 --~--~v~~~--~l------~~~~ydavvlAtGa~~~~~ 532 (752)
T PRK12778 506 --K--TITIE--EL------EEEGFKGIFIASGAGLPNF 532 (752)
T ss_pred --C--cCCHH--HH------hhcCCCEEEEeCCCCCCCC
Confidence 1 12222 11 14568999999998 4654
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0036 Score=70.60 Aligned_cols=99 Identities=11% Similarity=0.204 Sum_probs=72.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC--------------------------------C----c------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL--------------------------------N----T------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l--------------------------------~----~------ 608 (866)
-+|+|||||+.|+-+|..|++.|.+|+++++.+... . .
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 85 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLET 85 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEEE
Confidence 479999999999999999999999999998764100 0 0
Q ss_pred ---------c---------------cHHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEe
Q psy9583 609 ---------V---------------DEEIAKKAFHLLNKQ-GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663 (866)
Q Consensus 609 ---------~---------------d~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~ 663 (866)
+ ...+.+.+.+.+++. |++++.++.++++..+++++.+.+. +|. ++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~--~g~------~~~ 157 (391)
T PRK08020 86 WEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLA--DGE------EIQ 157 (391)
T ss_pred EeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEEC--CCC------EEE
Confidence 0 011223344445555 8999999999999877777666654 554 789
Q ss_pred ccEEEEeeccccCC
Q psy9583 664 FDKLLIAIGRIPNT 677 (866)
Q Consensus 664 ~D~vi~a~G~~p~~ 677 (866)
+|.||.|.|.....
T Consensus 158 a~~vI~AdG~~S~v 171 (391)
T PRK08020 158 AKLVIGADGANSQV 171 (391)
T ss_pred eCEEEEeCCCCchh
Confidence 99999999987653
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0017 Score=75.46 Aligned_cols=90 Identities=20% Similarity=0.296 Sum_probs=68.7
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINY 648 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~ 648 (866)
.+++++|+|+|.+|+++|..|.++|.+|+++++.+. +....+.+.|++.||+++++..+. .
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-------~~~~~~~~~l~~~gv~~~~~~~~~------------~ 75 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-------ERHRALAAILEALGATVRLGPGPT------------L 75 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------hhhHHHHHHHHHcCCEEEECCCcc------------c
Confidence 367999999999999999999999999999987643 234456677888999998776542 0
Q ss_pred eeCCCCccceeEEEeccEEEEeeccccCCCCCC-ccccCeee
Q psy9583 649 SNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN-IDKIGLKV 689 (866)
Q Consensus 649 ~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~-l~~~gl~~ 689 (866)
...+|.||+++|..|+.+++. +.+.|+++
T Consensus 76 ------------~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 76 ------------PEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred ------------cCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 234799999999999988631 23445544
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0018 Score=79.72 Aligned_cols=90 Identities=22% Similarity=0.363 Sum_probs=66.3
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEEEc
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKIN 640 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~ 640 (866)
+++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. .++.+......+.+.+.||+++++....
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d----- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPD----- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccc-----
Confidence 57999999999999999999999999999998765421 2345556666677888999999874311
Q ss_pred CCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 641 KENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 641 ~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
+.+. +.. ...+|.|++|+|..+..
T Consensus 612 -----~~ve--~l~------~~gYDaVIIATGA~~~~ 635 (1012)
T TIGR03315 612 -----LTVA--ELK------NQGYKYVILAIGAWKHG 635 (1012)
T ss_pred -----eEhh--hhh------cccccEEEECCCCCCCC
Confidence 1111 111 34589999999987543
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00052 Score=76.79 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=36.0
Q ss_pred ceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~ 436 (866)
+++|||||++||+||++|++.+ .+++|+|++ +.+||...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~------~r~GG~l~ 42 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD------DRVGGLLR 42 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecC------CCCCceEE
Confidence 5999999999999999999999 999999998 78999754
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0065 Score=68.75 Aligned_cols=99 Identities=12% Similarity=0.193 Sum_probs=72.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-----------ccc-----------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-----------TVD----------------------------- 610 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-----------~~d----------------------------- 610 (866)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.... .+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 4699999999999999999999999999998654110 000
Q ss_pred ---------------------------HHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEE
Q psy9583 611 ---------------------------EEIAKKAFHLLNKQ-GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITS 662 (866)
Q Consensus 611 ---------------------------~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~ 662 (866)
..+.+.+.+.+.+. |+++++++++++++.+++.+.+++. +|. ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~--~g~------~i 155 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLK--DGS------ML 155 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEc--CCC------EE
Confidence 01112223333443 7899999999999887777777664 555 79
Q ss_pred eccEEEEeeccccCC
Q psy9583 663 IFDKLLIAIGRIPNT 677 (866)
Q Consensus 663 ~~D~vi~a~G~~p~~ 677 (866)
.+|+||-|-|.....
T Consensus 156 ~a~lvVgADG~~S~v 170 (400)
T PRK08013 156 TARLVVGADGANSWL 170 (400)
T ss_pred EeeEEEEeCCCCcHH
Confidence 999999999987544
|
|
| >TIGR01730 RND_mfp RND family efflux transporter, MFP subunit | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=72.62 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=57.7
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecce--------------------------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKV-------------------------------------------------- 45 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~-------------------------------------------------- 45 (866)
.+|+|.++++++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 459999999999999999999999975311
Q ss_pred ---------------------eeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 46 ---------------------ILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 46 ---------------------~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
...|.||.+|+|..+.+++|+.+..|++|+.+....
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~g~~l~~i~~~~ 169 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAYVTAGQTLATIVDLD 169 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCceeCCCCcEEEEEcCC
Confidence 246999999999999999999999999999997543
|
This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. |
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0038 Score=73.11 Aligned_cols=99 Identities=11% Similarity=0.031 Sum_probs=66.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+|+|||||+.|+..|..|++.|.+|+|+++.+ .+... +
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~------~il~~------------------------------~----- 291 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK------KVLRG------------------------------F----- 291 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc------ccccc------------------------------c-----
Confidence 689999999999999999999999999999861 11000 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
+ ..+...+...+++.||+++.+..+. +.. .....+.+...++....+|.|++|+|..|..
T Consensus 292 --d------------~~~~~~l~~~L~~~GV~i~~~~~v~~i~~--~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 292 --D------------EEVRDFVAEQMSLRGIEFHTEESPQAIIK--SADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred --C------------HHHHHHHHHHHHHCCcEEEeCCEEEEEEE--cCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 0 0001123445778899999887655 211 1123344544444445589999999998874
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0064 Score=68.63 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=75.0
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC--C----c------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL--N----T------------------------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l--~----~------------------------------------ 608 (866)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... . .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 579999999999999999999999999999876310 0 0
Q ss_pred -----c-------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEE-cCCeEEEEEeeCCCCccceeEEEeccEEEE
Q psy9583 609 -----V-------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKI-NKENVLINYSNKSTNVKTEIITSIFDKLLI 669 (866)
Q Consensus 609 -----~-------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~ 669 (866)
+ -+++.+.+.+...+.|+++++++++++++. +++...+++. .+|+ ..++.+|+||-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~-~~G~----~~~i~ad~vVg 157 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYE-KDGE----EHRLDCDFIAG 157 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEE-cCCe----EEEEEeCEEEE
Confidence 0 012233344445667999999999999986 5556666664 2443 34789999999
Q ss_pred eeccccCCC
Q psy9583 670 AIGRIPNTN 678 (866)
Q Consensus 670 a~G~~p~~~ 678 (866)
|-|.....-
T Consensus 158 ADG~~S~vR 166 (392)
T PRK08243 158 CDGFHGVSR 166 (392)
T ss_pred CCCCCCchh
Confidence 999876553
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.003 Score=75.77 Aligned_cols=91 Identities=27% Similarity=0.352 Sum_probs=68.8
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------C--cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------N--TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------~--~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.+...+.+.+.|+++++++.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~--- 268 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR--- 268 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccC---
Confidence 35799999999999999999999999999999887652 2 23566667777888899999998876511
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.+.+. +. ...+|.|++|+|..+.
T Consensus 269 -----dv~~~--~~-------~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 269 -----DITLE--EL-------QKEFDAVLLAVGAQKA 291 (652)
T ss_pred -----ccCHH--HH-------HhhcCEEEEEcCCCCC
Confidence 01111 11 2348999999998754
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0097 Score=63.94 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=72.7
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCc-EEEEecCCcC-----------CC-----cccHHHHHHHHHHHHHcCCEEEeCce
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNF-----------LN-----TVDEEIAKKAFHLLNKQGLNIILNTK 633 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~-Vtli~~~~~~-----------l~-----~~d~~~~~~l~~~l~~~GV~i~~~~~ 633 (866)
-.|+|||+|+.|+-.|.++.+.+.+ +.+++....- .| ...+++.+...++.+.-|+++.. ..
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence 4689999999999999999999988 4454442110 01 13577788888888888999987 77
Q ss_pred EEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 634 v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+.+++..++.+.+... ++ +++++.||+|+|..+....
T Consensus 83 v~~v~~~~~~F~v~t~--~~-------~~~ak~vIiAtG~~~~~~~ 119 (305)
T COG0492 83 VEKVELEGGPFKVKTD--KG-------TYEAKAVIIATGAGARKLG 119 (305)
T ss_pred EEEEeecCceEEEEEC--CC-------eEEEeEEEECcCCcccCCC
Confidence 7777766544444443 44 5999999999998876654
|
|
| >PRK12784 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0064 Score=48.62 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=59.3
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEec-ceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETD-KVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~-k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
-.|++-+.++.+++.|-+.++|+-|+++ +.-..|.--.+|.|..+.+++||.+..+..|+.++++
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~i~~dtlL~~~edD 77 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQIHTDTLLVRLEDD 77 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCceecCCcEEEEEeec
Confidence 4699999999999999999999999994 5566688899999999999999999999999999864
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0031 Score=75.99 Aligned_cols=90 Identities=22% Similarity=0.432 Sum_probs=68.5
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------C--cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------N--TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------~--~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .++.++.....+.+++.|+++++++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCC---
Confidence 46899999999999999999999999999999877642 1 24566666667788899999999887621
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+ +.+. + ....+|.|++|+|..+
T Consensus 403 -~----i~~~--~-------~~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 -D----ISLE--S-------LLEDYDAVFVGVGTYR 424 (654)
T ss_pred -c----CCHH--H-------HHhcCCEEEEeCCCCC
Confidence 0 1111 1 0235899999999754
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0088 Score=67.00 Aligned_cols=97 Identities=18% Similarity=0.337 Sum_probs=70.8
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCC----cCC---C--ccc--------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS----NFL---N--TVD-------------------------------- 610 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~----~~l---~--~~d-------------------------------- 610 (866)
+|+|||||+.|+-+|..|++.|.+|+++++.+ .+. . .+.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999752 100 0 001
Q ss_pred ---------------------HHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEE
Q psy9583 611 ---------------------EEIAKKAFHLLNKQ-GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLL 668 (866)
Q Consensus 611 ---------------------~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi 668 (866)
.++.+.+.+.+.+. +++++++++++++..+++++.+.+. ++ ++.+|+||
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~--~~-------~~~adlvI 153 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFD--DK-------QIKCNLLI 153 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEc--CC-------EEeeCEEE
Confidence 12233334444454 4888889999999887777777663 32 78999999
Q ss_pred EeeccccCC
Q psy9583 669 IAIGRIPNT 677 (866)
Q Consensus 669 ~a~G~~p~~ 677 (866)
.|-|.....
T Consensus 154 gADG~~S~v 162 (374)
T PRK06617 154 ICDGANSKV 162 (374)
T ss_pred EeCCCCchh
Confidence 999987655
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00081 Score=80.29 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=31.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+|||||+||++||..|++.|++|+|+|+.
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~ 192 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGR 192 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Confidence 488999999999999999999999999999997
|
|
| >PRK10476 multidrug resistance protein MdtN; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0022 Score=70.90 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=32.0
Q ss_pred eEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 47 ~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
..|.||++|+|.++.+++|+.|.+|++|+.|....
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGEFAAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCCCCcCCCCeEEEEecCC
Confidence 46999999999999999999999999999997654
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00089 Score=77.38 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=37.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCC-eEEEEeccCCCcccccCCCccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~~~~~~~~~~GG~~~ 436 (866)
..+||+|||||++||+||.+|++.|. +|+|+|++ ..+||.+.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~------~~~GG~~~ 67 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEAT------DRIGGRMR 67 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCC------CCCCCcce
Confidence 45899999999999999999999998 69999998 67788653
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.014 Score=67.68 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=67.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCCcCCCcc-----------------------cHHHH-----------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNFLNTV-----------------------DEEIA----------- 614 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~~~l~~~-----------------------d~~~~----------- 614 (866)
++|+|||+|+.|+-++..|.+.+. +|++++++..+.... ++.+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 579999999999999999987654 799998755332110 01111
Q ss_pred -----------------------------HHHHHHHHHcC--CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEe
Q psy9583 615 -----------------------------KKAFHLLNKQG--LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663 (866)
Q Consensus 615 -----------------------------~~l~~~l~~~G--V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~ 663 (866)
+.+.+.+.+.| +.++.+++|++++..++++.+.+. .++. .+.
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~-~gg~------~i~ 154 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATN-QDLP------SET 154 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEEC-CCCe------EEE
Confidence 11122333455 678889999999888777766553 1233 789
Q ss_pred ccEEEEeeccccC
Q psy9583 664 FDKLLIAIGRIPN 676 (866)
Q Consensus 664 ~D~vi~a~G~~p~ 676 (866)
+|.||+|+|..+.
T Consensus 155 aD~VVLAtGh~~p 167 (534)
T PRK09897 155 FDLAVIATGHVWP 167 (534)
T ss_pred cCEEEECCCCCCC
Confidence 9999999997543
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.01 Score=67.13 Aligned_cols=100 Identities=14% Similarity=0.180 Sum_probs=75.4
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcC----CcEEEEecCCcCCC--------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLG----SEVTILEMSSNFLN-------------------------------------- 607 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g----~~Vtli~~~~~~l~-------------------------------------- 607 (866)
..+|+|||||+.|+-+|..|++.| .+|+++++.+..-.
T Consensus 11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~ 90 (398)
T PRK06996 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR 90 (398)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence 457999999999999999999987 46999987531000
Q ss_pred ----------------c----c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccE
Q psy9583 608 ----------------T----V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 608 ----------------~----~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~ 666 (866)
. . -.++.+.+.+.+++.|++++.++++++++.+++++.+.+.+.+|. .++.+|+
T Consensus 91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~-----~~i~a~l 165 (398)
T PRK06996 91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGA-----RTLRARI 165 (398)
T ss_pred CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcc-----eEEeeeE
Confidence 0 0 034566667777888999999999999988888888877533331 3799999
Q ss_pred EEEeeccc
Q psy9583 667 LLIAIGRI 674 (866)
Q Consensus 667 vi~a~G~~ 674 (866)
||-|.|..
T Consensus 166 vIgADG~~ 173 (398)
T PRK06996 166 AVQAEGGL 173 (398)
T ss_pred EEECCCCC
Confidence 99999953
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.013 Score=69.20 Aligned_cols=103 Identities=15% Similarity=0.212 Sum_probs=73.8
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-----------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT----------------------------------------- 608 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 608 (866)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.....
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 467999999999999999999999999999875421100
Q ss_pred ----------c--------------------------c-HHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEEEEEee
Q psy9583 609 ----------V--------------------------D-EEIAKKAFHLLNK-QGLNIILNTKIHDIKINKENVLINYSN 650 (866)
Q Consensus 609 ----------~--------------------------d-~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~v~~~~ 650 (866)
+ + ..+...+.+.+++ .|+++++++.+++++.+++++.+.+.+
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~ 166 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATVED 166 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEEEE
Confidence 0 0 0012223333333 489999999999999888777777654
Q ss_pred -CCCCccceeEEEeccEEEEeeccccC
Q psy9583 651 -KSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 651 -~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.+|. ..++.+|.||.|.|....
T Consensus 167 ~~~g~----~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 167 LDGGE----SLTIRADYLVGCDGARSA 189 (545)
T ss_pred CCCCc----EEEEEEEEEEecCCcchH
Confidence 2332 347899999999997653
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=68.28 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=70.0
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc------------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------------------------------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 608 (866)
-.|+|||+|+.|+-+|..+++.|.+|.++++...+...
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 46999999999999999999999999999864332110
Q ss_pred c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 609 V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 609 ~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+ ...+.+.+.+.+.+.|+++ .++.|+++..+++++.+... .+|. ++.++.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~-~dG~------~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVAC-EDGR------VIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEE-cCCc------EEECCEEEECCCcCh
Confidence 0 0122344555566779998 57899999876665543332 2454 799999999999876
|
|
| >PF13533 Biotin_lipoyl_2: Biotin-lipoyl like | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0013 Score=49.72 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=26.4
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecc
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDK 44 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k 44 (866)
..|+|.+|+|++||.|++||+|+++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 46999999999999999999999998753
|
|
| >KOG2404|consensus | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0043 Score=64.24 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=33.7
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
-|||||+|.|||+|+..+...|-.|+|+|+. ..+||..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~------~s~GGNS 48 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKA------GSIGGNS 48 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEecc------CCcCCcc
Confidence 4999999999999999999998889999998 5677654
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.016 Score=65.70 Aligned_cols=102 Identities=21% Similarity=0.299 Sum_probs=71.5
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-----cc-----------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-----TV----------------------------------- 609 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-----~~----------------------------------- 609 (866)
..+|+|||||++|+-+|..|++.|.+|+++++.+.... .+
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 35799999999999999999999999999997642100 00
Q ss_pred ---------------------cHHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccE
Q psy9583 610 ---------------------DEEIAKKAFHLLNK-QGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 610 ---------------------d~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~ 666 (866)
...+.+.+.+.+.+ .|++++.++.++++..+++.+. +.+...+|. .++.+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~-----~~i~a~~ 160 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGP-----GEIRADL 160 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCc-----EEEEeCE
Confidence 01122333344444 4899999999999987766543 444433442 3789999
Q ss_pred EEEeeccccC
Q psy9583 667 LLIAIGRIPN 676 (866)
Q Consensus 667 vi~a~G~~p~ 676 (866)
||.|.|....
T Consensus 161 vI~AdG~~S~ 170 (407)
T PRK06185 161 VVGADGRHSR 170 (407)
T ss_pred EEECCCCchH
Confidence 9999998653
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=66.40 Aligned_cols=100 Identities=15% Similarity=0.274 Sum_probs=71.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC--cCCC---------cccH-------------H--------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS--NFLN---------TVDE-------------E-------------- 612 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~--~~l~---------~~d~-------------~-------------- 612 (866)
-+|+|||||+.|+-+|..|++.|.+|+++++.+ .+.. .+.+ .
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 369999999999999999999999999999764 1000 0000 0
Q ss_pred ----------------------------HHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEe
Q psy9583 613 ----------------------------IAKKAFHLLNK-QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663 (866)
Q Consensus 613 ----------------------------~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~ 663 (866)
+...+.+.+.+ .|++++.++++++++.+++++.+++. +|. ++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~--~g~------~~~ 155 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLE--SGA------EIE 155 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEEC--CCC------EEE
Confidence 00011122222 37899999999999888777777775 565 899
Q ss_pred ccEEEEeeccccCCC
Q psy9583 664 FDKLLIAIGRIPNTN 678 (866)
Q Consensus 664 ~D~vi~a~G~~p~~~ 678 (866)
+|+||.|.|..+...
T Consensus 156 ~~lvIgADG~~S~vR 170 (384)
T PRK08849 156 AKWVIGADGANSQVR 170 (384)
T ss_pred eeEEEEecCCCchhH
Confidence 999999999877653
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.001 Score=76.69 Aligned_cols=39 Identities=23% Similarity=0.467 Sum_probs=35.6
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
+|+|||||++|++||..|++.|++|+|+|+. +.+||.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~------~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESR------SFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEec------CCCCceee
Confidence 5899999999999999999999999999998 67888653
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.013 Score=65.99 Aligned_cols=97 Identities=13% Similarity=0.225 Sum_probs=70.2
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc----c-------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT----V------------------------------------- 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~----~------------------------------------- 609 (866)
.+|+|||||+.|+-+|..|++.|.+|+++++.+..... +
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~~ 87 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRLI 87 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCCC
Confidence 47999999999999999999999999999986432100 0
Q ss_pred ----------------------cHHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccE
Q psy9583 610 ----------------------DEEIAKKAFHLLNKQ-GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 610 ----------------------d~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~ 666 (866)
...+.+.+.+.+.+. ++. ++++++++++.+++++.+++. +|. ++.+|.
T Consensus 88 ~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~--~g~------~~~a~~ 158 (388)
T PRK07494 88 RAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLA--DGT------TLSARL 158 (388)
T ss_pred CCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEEC--CCC------EEEEeE
Confidence 011223334444444 455 778999999887777776654 554 789999
Q ss_pred EEEeeccccC
Q psy9583 667 LLIAIGRIPN 676 (866)
Q Consensus 667 vi~a~G~~p~ 676 (866)
||.|.|....
T Consensus 159 vI~AdG~~S~ 168 (388)
T PRK07494 159 VVGADGRNSP 168 (388)
T ss_pred EEEecCCCch
Confidence 9999998754
|
|
| >KOG1298|consensus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0024 Score=67.74 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=31.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+|||+|.+|.+.|..|++.|.+|.+|||+
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred cccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 589999999999999999999999999999997
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.012 Score=64.99 Aligned_cols=69 Identities=20% Similarity=0.297 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCe-EEEEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCe
Q psy9583 612 EIAKKAFHLLNKQ-GLNIILNTKIHDIKINKEN-VLINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687 (866)
Q Consensus 612 ~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~-~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl 687 (866)
.+.+.+.+.|.+. |++++++++|+.++..+++ +.+.+.+ .+|. ..++.++.|+++.|-..- .+ +..+|+
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~----~~~v~a~FVfvGAGG~aL-~L--Lqksgi 253 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGE----KREVRAKFVFVGAGGGAL-PL--LQKSGI 253 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCC----eEEEECCEEEECCchHhH-HH--HHHcCC
Confidence 4556666677777 9999999999999998776 7777753 1232 568999999999986532 22 466666
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0013 Score=78.43 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=32.5
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+.|||+|||||..|+++|+.|+++|++|+|||++
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 3599999999999999999999999999999997
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0043 Score=70.31 Aligned_cols=91 Identities=26% Similarity=0.436 Sum_probs=71.5
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEEEc
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKIN 640 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~ 640 (866)
+++|+|||+|+-|+.+|..|++.|+.|+++++.+.... .++.++.+...+.|++.|++|++++.+-.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~---- 198 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR---- 198 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECC----
Confidence 58999999999999999999999999999998877632 24678889999999999999999988731
Q ss_pred CCeEEEEEeeCCCCccceeEEEeccEEEEeecc-ccCC
Q psy9583 641 KENVLINYSNKSTNVKTEIITSIFDKLLIAIGR-IPNT 677 (866)
Q Consensus 641 ~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~-~p~~ 677 (866)
.++++ ....++|.|++++|. .|..
T Consensus 199 ----~it~~---------~L~~e~Dav~l~~G~~~~~~ 223 (457)
T COG0493 199 ----DITLE---------ELLKEYDAVFLATGAGKPRP 223 (457)
T ss_pred ----cCCHH---------HHHHhhCEEEEeccccCCCC
Confidence 12221 013345999999995 3443
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.013 Score=65.89 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=68.5
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-------------------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------------------------------------------- 608 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------- 608 (866)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 4899999999999999999999999999976532100
Q ss_pred -c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 609 -V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKIN-KENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 609 -~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+ ...+.+.+.+.+.+.|++++ ...+..+..+ ++.+.+.+. +|. ++.++.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~~~~~~v~~~--~g~------~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWL-ERKAIHAEADGVALSTVYCA--GGQ------RIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEE-ccEEEEEEecCCceeEEEeC--CCC------EEEeCEEEECCCCch
Confidence 0 02233445555667788886 5578887766 444455443 554 799999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK15136 multidrug efflux system protein EmrA; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.003 Score=70.80 Aligned_cols=35 Identities=9% Similarity=0.259 Sum_probs=32.1
Q ss_pred eEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 47 ~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
..|.||.+|+|..+.+++|+.|..|++|+.+....
T Consensus 216 t~I~AP~dG~V~~~~v~~G~~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGAQISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCCEeCCCCeEEEEEeCC
Confidence 47999999999999999999999999999997544
|
|
| >KOG2852|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.012 Score=60.29 Aligned_cols=37 Identities=11% Similarity=0.211 Sum_probs=32.7
Q ss_pred hcccccceeeecCCccHHHHHHHHHHCC------CeEEEEecc
Q psy9583 386 IMNKNFDVIVIGAGPGGYVASIRLAQLG------FKTACIDEW 422 (866)
Q Consensus 386 ~m~~~~dVvIIGgG~AGl~aA~~L~~~g------~~V~liek~ 422 (866)
+|.+..+|+|+|||..|.++|+.|++.+ ..|+|||+.
T Consensus 6 r~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 6 REGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred ccCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 3445689999999999999999999986 789999986
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.019 Score=64.63 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=70.6
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecC-CcCC-----------Cc-------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMS-SNFL-----------NT------------------------------- 608 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~-~~~l-----------~~------------------------------- 608 (866)
+|+|||||+.|+-+|..|++.|.+|.++++. +... ..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999986 2110 00
Q ss_pred -------cc-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 609 -------VD-EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 609 -------~d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
++ ..+-+.+.+...+.|++++.+ .++++..+++.+.+.+...+....++..++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIHG-LFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEee-EEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 00 112233445556679999755 68888877777777765310000011247999999999997653
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.012 Score=66.43 Aligned_cols=93 Identities=25% Similarity=0.361 Sum_probs=67.5
Q ss_pred EEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc---------------------------------------------
Q psy9583 574 CIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT--------------------------------------------- 608 (866)
Q Consensus 574 vVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~--------------------------------------------- 608 (866)
+|||||..|+-+|..+++.|.+|+++++++.+...
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 58899999999999999888889888876543110
Q ss_pred ----------------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccE
Q psy9583 609 ----------------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 609 ----------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~ 666 (866)
...++.+.+.+.+++.|+++++++.++++..+++.+.+.. ++. .+.+|.
T Consensus 81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~---~~~------~i~ad~ 151 (400)
T TIGR00275 81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVET---SGG------EYEADK 151 (400)
T ss_pred HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEE---CCc------EEEcCE
Confidence 0122344455667778999999999999987666555444 333 688999
Q ss_pred EEEeecccc
Q psy9583 667 LLIAIGRIP 675 (866)
Q Consensus 667 vi~a~G~~p 675 (866)
||+|+|...
T Consensus 152 VIlAtG~~s 160 (400)
T TIGR00275 152 VILATGGLS 160 (400)
T ss_pred EEECCCCcc
Confidence 999999754
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.015 Score=66.04 Aligned_cols=99 Identities=12% Similarity=0.253 Sum_probs=71.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecC-CcCC-------C--ccc-------------H----------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS-SNFL-------N--TVD-------------E---------------- 611 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~-~~~l-------~--~~d-------------~---------------- 611 (866)
.+|+|||||+.|+-+|..|++.|.+|+++++. +... . .+. +
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~ 84 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEVW 84 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEEE
Confidence 57999999999999999999999999999985 1100 0 000 0
Q ss_pred ---------------------------HHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEe
Q psy9583 612 ---------------------------EIAKKAFHLLNK-QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663 (866)
Q Consensus 612 ---------------------------~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~ 663 (866)
.+...+.+.+.+ .|++++.++++++++.+++.+.+.+. +|+ ++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~--~g~------~~~ 156 (405)
T PRK08850 85 EQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLD--NGQ------ALT 156 (405)
T ss_pred eCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEEC--CCC------EEE
Confidence 011222333333 47899999999999887777777664 565 799
Q ss_pred ccEEEEeeccccCC
Q psy9583 664 FDKLLIAIGRIPNT 677 (866)
Q Consensus 664 ~D~vi~a~G~~p~~ 677 (866)
+|+||.|.|.....
T Consensus 157 a~lvIgADG~~S~v 170 (405)
T PRK08850 157 AKLVVGADGANSWL 170 (405)
T ss_pred eCEEEEeCCCCChh
Confidence 99999999976543
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.019 Score=65.47 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=69.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC------------------Ccc-----------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL------------------NTV----------------------- 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l------------------~~~----------------------- 609 (866)
-.|+|||||+.|+-+|..|++.|.+|.++++.+.+. +.+
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 369999999999999999999999999998754320 000
Q ss_pred ---------------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEE
Q psy9583 610 ---------------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLL 668 (866)
Q Consensus 610 ---------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi 668 (866)
-..+-+.+.+.+++.|++++.+++|+.+..+++.+..... ++. ++.+|.||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~--~~~------~i~A~~VI 157 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQA--GDD------ILEANVVI 157 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEe--CCe------EEECCEEE
Confidence 0111223556667789999999999998876555543222 222 79999999
Q ss_pred Eeecccc
Q psy9583 669 IAIGRIP 675 (866)
Q Consensus 669 ~a~G~~p 675 (866)
.|.|...
T Consensus 158 ~AdG~~s 164 (429)
T PRK10015 158 LADGVNS 164 (429)
T ss_pred EccCcch
Confidence 9999754
|
|
| >KOG2853|consensus | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.041 Score=57.75 Aligned_cols=49 Identities=22% Similarity=0.519 Sum_probs=38.0
Q ss_pred ccceeeecCCccHHHHHHHHHHC----CCeEEEEeccCCCcccc---cCCCcccee
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL----GFKTACIDEWKDNEENF---ALGGTCTNV 438 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~----g~~V~liek~~~~~~~~---~~GG~~~~~ 438 (866)
+.||+|||||-.|.+.|.-|+++ |++|+++|+++.-..+. ..||.|...
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQF 141 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQF 141 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeec
Confidence 58999999999999999988765 79999999985322222 248888544
|
|
| >KOG0685|consensus | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0017 Score=71.14 Aligned_cols=41 Identities=29% Similarity=0.498 Sum_probs=35.8
Q ss_pred cccceeeecCCccHHHHHHHHHHCC-CeEEEEeccCCCcccccCCCcc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLG-FKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~~~~~~~~~GG~~ 435 (866)
...+|||||||.||++||.+|.+.| .+++|+|.. +++||..
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~------dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEAS------DRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEec------cccCceE
Confidence 3568999999999999999999876 579999998 7888865
|
|
| >PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0038 Score=57.25 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=32.3
Q ss_pred eCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeec
Q psy9583 25 KKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63 (866)
Q Consensus 25 ~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~ 63 (866)
.++|+.|++|++++.||+.|.+.++.||.+|+|.++.-+
T Consensus 39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~ 77 (122)
T PF01597_consen 39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEE 77 (122)
T ss_dssp B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GH
T ss_pred ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccc
Confidence 466999999999999999999999999999999987543
|
GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B .... |
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.019 Score=64.76 Aligned_cols=98 Identities=20% Similarity=0.338 Sum_probs=70.4
Q ss_pred CeEEEECCcHHHHHHHHHHHhc---CCcEEEEecCCcC---CC--------------------cc-c-------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNF---LN--------------------TV-D------------- 610 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~---g~~Vtli~~~~~~---l~--------------------~~-d------------- 610 (866)
-+|+|||+|+.|+-+|..|++. |.+|+++++.... .+ .+ +
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 3689999999999999999998 9999999984110 00 00 0
Q ss_pred ----------------------------HHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEE
Q psy9583 611 ----------------------------EEIAKKAFHLLNK-QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIIT 661 (866)
Q Consensus 611 ----------------------------~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~ 661 (866)
.++.+.+.+.+.+ .|++++.+++++++..+++++.+++. ++. .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~--~g~------~ 155 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLD--DGE------T 155 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEEC--CCC------E
Confidence 0111223333444 47999999999999877777776654 454 7
Q ss_pred EeccEEEEeeccccC
Q psy9583 662 SIFDKLLIAIGRIPN 676 (866)
Q Consensus 662 ~~~D~vi~a~G~~p~ 676 (866)
+.+|.||.|.|....
T Consensus 156 ~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 156 LTGRLLVAADGSHSA 170 (395)
T ss_pred EEeCEEEEecCCChh
Confidence 899999999998764
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0014 Score=77.24 Aligned_cols=34 Identities=29% Similarity=0.479 Sum_probs=32.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+..+|+|||||++|+++|..|++.|++|+|||+.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~ 113 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKD 113 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 4589999999999999999999999999999996
|
|
| >PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0037 Score=70.24 Aligned_cols=65 Identities=18% Similarity=0.315 Sum_probs=55.8
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecc---------------------------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDK--------------------------------------------------- 44 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k--------------------------------------------------- 44 (866)
..|+|.++++++||.|++||+|+.+++.-
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46999999999999999999999998631
Q ss_pred --------------------eeeEEecCCCeEEEEEeecCCCEEecC--CEEEEEecC
Q psy9583 45 --------------------VILELPAPQDGIINKIIITDGSIVTSN--QVIALIDTD 80 (866)
Q Consensus 45 --------------------~~~~i~~~~~G~~~~~~~~~g~~v~~g--~~l~~~~~~ 80 (866)
....|.||++|+|.+.++++|+.|.+| ++|+.+...
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGALVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCeecCCCCcceEEEEec
Confidence 013799999999999999999999996 588888643
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0012 Score=71.27 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEc--CCeE-EEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCe
Q psy9583 613 IAKKAFHLLNKQGLNIILNTKIHDIKIN--KENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl 687 (866)
...++...++..|++|++++.|++|..+ +... -|.+...++. .....+.++.||+|.|.--...+ |..+|+
T Consensus 195 ~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~--~~~~~~~ak~VIlaAGai~Tp~L--Ll~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGG--VQRRIVAAKEVILAAGAIGTPRL--LLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTS--EEEEEEEEEEEEE-SHHHHHHHH--HHHTTE
T ss_pred hhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCc--ceeeeccceeEEeccCCCCChhh--hccccc
Confidence 3556666666669999999999999553 4433 3555544442 22356788999999997555555 344455
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >PRK03598 putative efflux pump membrane fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0035 Score=68.87 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=31.6
Q ss_pred eEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 47 ~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
..|.||++|+|..+.+++|+.|..|++|+.|...
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGTMLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCCCcCCCCeEEEEecC
Confidence 5799999999999999999999999999999754
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.018 Score=72.57 Aligned_cols=109 Identities=12% Similarity=0.131 Sum_probs=72.7
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc----------c-cHHHHHHHHHHHHHc-CCEEEeCceEEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT----------V-DEEIAKKAFHLLNKQ-GLNIILNTKIHDI 637 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~----------~-d~~~~~~l~~~l~~~-GV~i~~~~~v~~i 637 (866)
..+|+|||||+.|+..|..+++.|.+|++++..+.+... . ..+....+.+.++.. +++++.++.|..+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~~i 242 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAFGY 242 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEEEE
Confidence 468999999999999999999999999999987655321 1 123445566666666 5999999999887
Q ss_pred EEcCCeEEEE-Eee-----CCCCccceeEEEeccEEEEeeccccCCC
Q psy9583 638 KINKENVLIN-YSN-----KSTNVKTEIITSIFDKLLIAIGRIPNTN 678 (866)
Q Consensus 638 ~~~~~~~~v~-~~~-----~~g~~~~~~~~~~~D~vi~a~G~~p~~~ 678 (866)
...+....+. ... .++........+.+|.||+|||..|...
T Consensus 243 ~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~ 289 (985)
T TIGR01372 243 YDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPL 289 (985)
T ss_pred ecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCC
Confidence 5422111111 100 0111001123689999999999987654
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.021 Score=64.52 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=76.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC------------------ccc----------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN------------------TVD---------------------- 610 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~------------------~~d---------------------- 610 (866)
-.|+|||+|+.|+-+|..|++.|.+|.++++++.+.. .+.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 3689999999999999999999999999998654311 010
Q ss_pred -----------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 611 -----------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 611 -----------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
..+-+++.+..++.|++++.++++..+..+++++.+.+...+ .++.++.||.|.|....
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~-------~e~~a~~vI~AdG~~s~ 153 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGD-------DEVRAKVVIDADGVNSA 153 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCC-------EEEEcCEEEECCCcchH
Confidence 123345666777899999999999999988877776665322 38999999999996543
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0019 Score=75.44 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=36.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
.++|+|||||++|+++|..|++.|++|+|+|+. +.+||.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~------~~~gG~~ 114 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR------PFIGGKV 114 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecC------CCCCCce
Confidence 368999999999999999999999999999998 6778755
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0019 Score=77.69 Aligned_cols=34 Identities=35% Similarity=0.626 Sum_probs=32.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
..+|+|||||++|++||..|.+.|++|+|+|+..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 4789999999999999999999999999999983
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.002 Score=74.57 Aligned_cols=32 Identities=28% Similarity=0.470 Sum_probs=31.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
|||+|||+||+|+.+|..|++.|++|++||++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~ 32 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIG 32 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEecc
Confidence 69999999999999999999999999999998
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0058 Score=72.34 Aligned_cols=90 Identities=26% Similarity=0.486 Sum_probs=66.4
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceE-EEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKI-HDIK 638 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v-~~i~ 638 (866)
.+++|+|||+|++|+-+|..|++.|.+|+++++.+.+.. .++.++.+.-.+.+.+.|++++.++.+ ..+.
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~ 215 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDIT 215 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCC
Confidence 478999999999999999999999999999998765421 234555555566778899999988765 2221
Q ss_pred EcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 639 INKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 639 ~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.+. ....+|.|++|+|..+.
T Consensus 216 ~~~------------------~~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 216 LEQ------------------LEGEFDAVFVAIGAQLG 235 (564)
T ss_pred HHH------------------HHhhCCEEEEeeCCCCC
Confidence 100 01247999999998654
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=67.10 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=68.6
Q ss_pred eEEEECCcHHHHHHHHHHHhcC-CcEEEEecCCcCCCc-----ccHH-------------H-------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLG-SEVTILEMSSNFLNT-----VDEE-------------I------------------- 613 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g-~~Vtli~~~~~~l~~-----~d~~-------------~------------------- 613 (866)
+|+|||||..|+-+|..|++.| .+|+++++.+.+... +.+. +
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 599999987654210 0000 0
Q ss_pred ----------------------HHHHHHHHHHc--CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEE
Q psy9583 614 ----------------------AKKAFHLLNKQ--GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLI 669 (866)
Q Consensus 614 ----------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~ 669 (866)
...+.+.|.+. +..++++++|++++.+++++.+.+. +|. ++.+|.||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~--~g~------~~~ad~vVg 153 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASFGKRATQIEEQAEEVQVLFT--DGT------EYRCDLLIG 153 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEcCCEEEEEEecCCcEEEEEc--CCC------EEEeeEEEE
Confidence 11122222221 3567889999999887777777665 565 789999999
Q ss_pred eeccccC
Q psy9583 670 AIGRIPN 676 (866)
Q Consensus 670 a~G~~p~ 676 (866)
|.|....
T Consensus 154 ADG~~S~ 160 (414)
T TIGR03219 154 ADGIKSA 160 (414)
T ss_pred CCCccHH
Confidence 9997654
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.026 Score=63.74 Aligned_cols=32 Identities=31% Similarity=0.629 Sum_probs=29.6
Q ss_pred eEEEECCcHHHHHHHHHHHhc--CCcEEEEecCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSS 603 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~ 603 (866)
+|+|||||.+|+-+|..|+++ |.+|+++++.+
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 689999999999999999999 99999999864
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.031 Score=62.00 Aligned_cols=100 Identities=13% Similarity=0.069 Sum_probs=70.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC--------C-cccHHH-----------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL--------N-TVDEEI----------------------------- 613 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l--------~-~~d~~~----------------------------- 613 (866)
+|+|||+|+.|+-+|..|++. .+|+++++.+... . .+.+..
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999998 9999999876320 0 000000
Q ss_pred ----------------HHHHHHH---HHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 614 ----------------AKKAFHL---LNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 614 ----------------~~~l~~~---l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
+..+.+. ..+.|++++.++.++.++.+++++.+.+.. +|. ..++.+|.||.|.|..
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~-~g~----~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRA-DGW----EQHITARYLVGADGAN 156 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEec-CCc----EEEEEeCEEEECCCCC
Confidence 1111122 234689999999999998877777776632 342 2368999999999987
Q ss_pred cCC
Q psy9583 675 PNT 677 (866)
Q Consensus 675 p~~ 677 (866)
...
T Consensus 157 S~v 159 (351)
T PRK11445 157 SMV 159 (351)
T ss_pred cHH
Confidence 543
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.048 Score=62.26 Aligned_cols=137 Identities=21% Similarity=0.250 Sum_probs=87.2
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCc-EEEEecCCcCCCc------------------------c--------cHHHHHH
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNFLNT------------------------V--------DEEIAKK 616 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~-Vtli~~~~~~l~~------------------------~--------d~~~~~~ 616 (866)
..+|+|||+|++|+-+|..|.+.|.. +.++++++.+... + -.++.++
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y 87 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDY 87 (443)
T ss_pred cccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHHH
Confidence 35799999999999999999999998 9999987633210 1 0236788
Q ss_pred HHHHHHHcCCEE--EeCceEEEEEEcC--CeEEEEEeeCCCCccceeEEEeccEEEEeecc--ccCCCCCCccccCeeec
Q psy9583 617 AFHLLNKQGLNI--ILNTKIHDIKINK--ENVLINYSNKSTNVKTEIITSIFDKLLIAIGR--IPNTNNLNIDKIGLKVN 690 (866)
Q Consensus 617 l~~~l~~~GV~i--~~~~~v~~i~~~~--~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~--~p~~~~l~l~~~gl~~~ 690 (866)
+...+++.++.. ..++.|+.+..+. ..+.+++. ++. ..++.+|.||+|+|. .|+.+-+ .|++.-
T Consensus 88 ~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~--~~~----~~~~~a~~vV~ATG~~~~P~iP~~----~G~~~f 157 (443)
T COG2072 88 IKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTS--DGG----TGELTADFVVVATGHLSEPYIPDF----AGLDEF 157 (443)
T ss_pred HHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEc--CCC----eeeEecCEEEEeecCCCCCCCCCC----CCccCC
Confidence 888888877644 4455565555444 45667665 333 112779999999996 3333322 122221
Q ss_pred CCCcEEeC----CCCCCCCCCEEEecccCCC
Q psy9583 691 ENNFIIVN----DNCETNIPNIYAIGDVVRG 717 (866)
Q Consensus 691 ~~G~i~Vd----~~l~Ts~~~VyA~GD~a~~ 717 (866)
.|.+.-. +...-.-++|-.||--++.
T Consensus 158 -~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA 187 (443)
T COG2072 158 -KGRILHSADWPNPEDLRGKRVLVIGAGASA 187 (443)
T ss_pred -CceEEchhcCCCccccCCCeEEEECCCccH
Confidence 3333222 1223355889999976653
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.027 Score=64.08 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=70.5
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---c--c-------------c-----------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---T--V-------------D----------------------- 610 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---~--~-------------d----------------------- 610 (866)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.+ . + .
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 689999999999999999999999999998754211 0 0 0
Q ss_pred --------------------HHHHHHHHHHHHH-cC-CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEE
Q psy9583 611 --------------------EEIAKKAFHLLNK-QG-LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLL 668 (866)
Q Consensus 611 --------------------~~~~~~l~~~l~~-~G-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi 668 (866)
..+.+.+.+.+.+ .| ..+++++++++++.+++++.+.+.+..+ ++..++.+|+||
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~---g~~~~~~adlvI 158 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAG---GDLVSVRGDVLI 158 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCC---CccceEEeeEEE
Confidence 0111223333333 35 4699999999998877666555543211 113479999999
Q ss_pred EeeccccCC
Q psy9583 669 IAIGRIPNT 677 (866)
Q Consensus 669 ~a~G~~p~~ 677 (866)
-|-|.....
T Consensus 159 gADG~~S~v 167 (413)
T PRK07538 159 GADGIHSAV 167 (413)
T ss_pred ECCCCCHHH
Confidence 999986644
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0092 Score=71.35 Aligned_cols=90 Identities=26% Similarity=0.385 Sum_probs=67.9
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
..++++|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .+..++.....+.+++.|++++.++.+..
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 358 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK--- 358 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC---
Confidence 468899999999999999999999999999998875421 13455556666788899999999987732
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+ +.+. + ....+|.||+|+|..+
T Consensus 359 -~----~~~~--~-------~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 359 -D----IPLE--E-------LREKHDAVFLSTGFTL 380 (604)
T ss_pred -c----CCHH--H-------HHhcCCEEEEEcCcCC
Confidence 0 1111 1 1346899999999763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 866 | ||||
| 1lpf_A | 477 | Three-Dimensional Structure Of Lipoamide Dehydrogen | 1e-126 | ||
| 3lad_A | 476 | Refined Crystal Structure Of Lipoamide Dehydrogenas | 1e-125 | ||
| 1zmc_A | 474 | Crystal Structure Of Human Dihydrolipoamide Dehydro | 1e-115 | ||
| 1dxl_A | 470 | Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy | 1e-114 | ||
| 1zy8_A | 474 | The Crystal Structure Of Dihydrolipoamide Dehydroge | 1e-114 | ||
| 3rnm_A | 495 | The Crystal Structure Of The Subunit Binding Of Hum | 1e-114 | ||
| 2qae_A | 468 | Crystal Structure Analysis Of Trypanosoma Cruzi Lip | 1e-106 | ||
| 2eq7_A | 455 | Crystal Structure Of Lipoamide Dehydrogenase From T | 1e-102 | ||
| 1jeh_A | 478 | Crystal Structure Of Yeast E3, Lipoamide Dehydrogen | 1e-101 | ||
| 3urh_A | 491 | Crystal Structure Of A Dihydrolipoamide Dehydrogena | 7e-98 | ||
| 1ebd_A | 455 | Dihydrolipoamide Dehydrogenase Complexed With The B | 1e-86 | ||
| 2eq6_A | 464 | Crystal Structure Of Lipoamide Dehydrogenase From T | 7e-81 | ||
| 1c4t_A | 233 | Catalytic Domain From Trimeric Dihydrolipoamide Suc | 2e-71 | ||
| 3ii4_A | 466 | Structure Of Mycobacterial Lipoamide Dehydrogenase | 2e-62 | ||
| 1lvl_A | 458 | The Refined Structure Of Pseudomonas Putida Lipoami | 1e-61 | ||
| 2a8x_A | 464 | Crystal Structure Of Lipoamide Dehydrogenase From M | 1e-61 | ||
| 1ojt_A | 482 | Structure Of Dihydrolipoamide Dehydrogenase Length | 2e-49 | ||
| 1bhy_A | 482 | Low Temperature Middle Resolution Structure Of P64k | 3e-49 | ||
| 3duf_I | 428 | Snapshots Of Catalysis In The E1 Subunit Of The Pyr | 5e-49 | ||
| 2r9z_A | 463 | Glutathione Amide Reductase From Chromatium Gracile | 1e-43 | ||
| 2grt_A | 461 | Human Glutathione Reductase A34e, R37w Mutant, Oxid | 4e-42 | ||
| 1grt_A | 478 | Human Glutathione Reductase A34eR37W MUTANT Length | 5e-42 | ||
| 1zk7_A | 467 | Crystal Structure Of Tn501 Mera Length = 467 | 5e-40 | ||
| 1typ_A | 487 | Substrate Interactions Between Trypanothione Reduct | 2e-38 | ||
| 3djg_X | 477 | Catalytic Cycle Of Human Glutathione Reductase Near | 2e-38 | ||
| 1bwc_A | 478 | Structure Of Human Glutathione Reductase Complexed | 2e-38 | ||
| 1tyt_A | 487 | Crystal And Molecular Structure Of Crithidia Fascic | 2e-38 | ||
| 2aaq_A | 479 | Crystal Structure Analysis Of The Human Glutahione | 2e-38 | ||
| 1xan_A | 461 | Human Glutathione Reductase In Complex With A Xanth | 3e-38 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 9e-38 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 1e-37 | ||
| 2x50_A | 510 | Crystal Structure Of Trypanothione Reductase From L | 1e-37 | ||
| 2jk6_A | 511 | Structure Of Trypanothione Reductase From Leishmani | 1e-37 | ||
| 2tpr_A | 490 | X-ray Structure Of Trypanothione Reductase From Cri | 2e-37 | ||
| 1k4q_A | 463 | Human Glutathione Reductase Inactivated By Peroxyni | 3e-37 | ||
| 3dgz_A | 488 | Crystal Structure Of Mouse Mitochondrial Thioredoxi | 4e-37 | ||
| 1gsn_A | 478 | Human Glutathione Reductase Modified By Dinitrosogl | 4e-37 | ||
| 1fea_A | 490 | Unliganded Crithidia Fasciculata Trypanothione Redu | 5e-37 | ||
| 1zdl_A | 517 | Crystal Structure Of Mouse Thioredoxin Reductase Ty | 5e-37 | ||
| 1grg_A | 478 | Substrate Binding And Catalysis By Glutathione Redu | 6e-37 | ||
| 1dnc_A | 478 | Human Glutathione Reductase Modified By Diglutathio | 6e-37 | ||
| 1ges_A | 450 | Anatomy Of An Engineered Nad-Binding Site Length = | 4e-36 | ||
| 2hqm_A | 479 | Crystal Structure Of Glutathione Reductase Glr1 Fro | 5e-35 | ||
| 3h4k_A | 598 | Crystal Structure Of The Wild Type Thioredoxin Glut | 1e-34 | ||
| 4b1b_A | 542 | Crystal Structure Of Plasmodium Falciparum Oxidised | 1e-34 | ||
| 2v6o_A | 596 | Structure Of Schistosoma Mansoni Thioredoxin-Glutat | 1e-34 | ||
| 2x8c_A | 598 | Thioredoxin Glutathione Reductase From Schistosoma | 1e-34 | ||
| 1h6v_A | 499 | Mammalian Thioredoxin Reductase Length = 499 | 6e-34 | ||
| 3o0h_A | 484 | Crystal Structure Of Glutathione Reductase From Bar | 9e-34 | ||
| 1b5s_A | 242 | Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt | 1e-33 | ||
| 3ean_A | 499 | Crystal Structure Of Recombinant Rat Selenoprotein | 3e-33 | ||
| 1ger_A | 450 | The Structure Of Glutathione Reductase From Escheri | 3e-33 | ||
| 2nvk_X | 488 | Crystal Structure Of Thioredoxin Reductase From Dro | 4e-32 | ||
| 3dgh_A | 483 | Crystal Structure Of Drosophila Thioredoxin Reducta | 5e-32 | ||
| 3dh9_A | 482 | Crystal Structure Of Drosophila Thioredoxin Reducta | 5e-32 | ||
| 3mae_A | 256 | Crystal Structure Of Probable Dihydrolipamide Acety | 3e-31 | ||
| 3l8k_A | 466 | Crystal Structure Of A Dihydrolipoyl Dehydrogenase | 6e-31 | ||
| 3ic9_A | 492 | The Structure Of Dihydrolipoamide Dehydrogenase Fro | 8e-31 | ||
| 1xdi_A | 499 | Crystal Structure Of Lpda (Rv3303c) From Mycobacter | 9e-31 | ||
| 2cfy_A | 521 | Crystal Structure Of Human Thioredoxin Reductase 1 | 5e-30 | ||
| 2zz0_A | 513 | Crystal Structure Of Human Thioredoxin Reductase I | 5e-30 | ||
| 3qfa_A | 519 | Crystal Structure Of The Human Thioredoxin Reductas | 6e-30 | ||
| 2j3n_A | 519 | X-Ray Structure Of Human Thioredoxin Reductase 1 Le | 6e-30 | ||
| 1onf_A | 500 | Crystal Structure Of Plasmodium Falciparum Glutathi | 6e-30 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 2e-27 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 2e-27 | ||
| 3rqc_A | 224 | Crystal Structure Of The Catalytic Core Of The 2-Ox | 2e-27 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 2e-27 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 1e-26 | ||
| 4dna_A | 463 | Crystal Structure Of Putative Glutathione Reductase | 2e-26 | ||
| 1dpc_A | 243 | Crystallographic And Enzymatic Investigations On Th | 1e-22 | ||
| 1eaa_A | 243 | Atomic Structure Of The Cubic Core Of The Pyruvate | 7e-22 | ||
| 1dpd_A | 243 | Crystallographic And Enzymatic Investigations On Th | 1e-21 | ||
| 2ihw_A | 262 | Crystal Structure Of A Cubic Core Of The Dihydrolip | 5e-21 | ||
| 3b8k_A | 239 | Structure Of The Truncated Human Dihydrolipoyl Acet | 5e-21 | ||
| 1dpb_A | 243 | Crystallographic And Enzymatic Investigations On Th | 1e-20 | ||
| 1mo9_A | 523 | Nadph Dependent 2-Ketopropyl Coenzyme M Oxidoreduct | 2e-17 | ||
| 3l60_A | 250 | Crystal Structure Of Branched-Chain Alpha-Keto Acid | 7e-16 | ||
| 1pmr_A | 80 | Lipoyl Domain From The Dihydrolipoyl Succinyltransf | 1e-15 | ||
| 3ntd_A | 565 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 8e-13 | ||
| 1ghj_A | 79 | Solution Structure Of The Lipoyl Domain Of The 2- O | 3e-12 | ||
| 4eqx_A | 437 | Crystal Structure Of The C43s Mutant Of Staphylococ | 5e-12 | ||
| 4emw_A | 436 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 5e-12 | ||
| 4em3_A | 437 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 5e-12 | ||
| 1yqz_A | 438 | Structure Of Coenzyme A-Disulfide Reductase From St | 6e-12 | ||
| 4eqs_A | 437 | Crystal Structure Of The Y419f Mutant Of Staphyloco | 6e-12 | ||
| 4eqr_A | 437 | Crystal Structure Of The Y361f Mutant Of Staphyloco | 6e-12 | ||
| 4eqw_A | 437 | Crystal Structure Of The Y361f, Y419f Mutant Of Sta | 6e-12 | ||
| 2xt6_A | 1113 | Crystal Structure Of Mycobacterium Smegmatis Alpha- | 6e-12 | ||
| 3nta_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 9e-11 | ||
| 3nt6_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 9e-11 | ||
| 3ef6_A | 410 | Crystal Structure Of Toluene 2,3-Dioxygenase Reduct | 1e-10 | ||
| 2l5t_A | 77 | Solution Nmr Structure Of E2 Lipoyl Domain From The | 8e-10 | ||
| 1zy8_L | 229 | The Crystal Structure Of Dihydrolipoamide Dehydroge | 8e-10 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 1e-09 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 9e-09 | ||
| 2dnc_A | 98 | Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain | 2e-08 | ||
| 3cty_A | 319 | Crystal Structure Of T. Acidophilum Thioredoxin Red | 3e-08 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 6e-08 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 7e-08 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 7e-08 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 1e-07 | ||
| 1hyu_A | 521 | Crystal Structure Of Intact Ahpf Length = 521 | 1e-07 | ||
| 2q7v_A | 325 | Crystal Structure Of Deinococcus Radiodurans Thiore | 1e-07 | ||
| 1lab_A | 80 | Three-Dimensional Structure Of The Lipoyl Domain Fr | 2e-07 | ||
| 1fl2_A | 310 | Catalytic Core Component Of The Alkylhydroperoxide | 2e-07 | ||
| 2bc0_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 5e-07 | ||
| 2bc1_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 5e-07 | ||
| 2gr3_A | 408 | Crystal Structure Of Ferredoxin Reductase, Bpha4 (O | 5e-07 | ||
| 1d7y_A | 408 | Crystal Structure Of Nadh-Dependent Ferredoxin Redu | 9e-07 | ||
| 4a5l_A | 314 | Crystal Structure Of The Thioredoxin Reductase From | 1e-06 | ||
| 1xhc_A | 367 | Nadh Oxidase /nitrite Reductase From Pyrococcus Fur | 2e-05 | ||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 5e-05 | ||
| 3f8d_A | 323 | Structure Of Sulfolobus Solfataricus Thioredoxin Re | 9e-05 | ||
| 3f8p_A | 323 | Structure Of Sulfolobus Solfataricus Trxr-B3 Length | 1e-04 | ||
| 1y8n_B | 128 | Crystal Structure Of The Pdk3-L2 Complex Length = 1 | 1e-04 | ||
| 1fyc_A | 106 | Inner Lipoyl Domain From Human Pyruvate Dehydrogena | 1e-04 | ||
| 3fg2_P | 404 | Crystal Structure Of Ferredoxin Reductase For The C | 2e-04 | ||
| 2coo_A | 70 | Solution Structure Of The E3_binding Domain Of Dihy | 4e-04 | ||
| 4gcm_A | 312 | Crystal Structure Of A Thioredoxine Reductase (Trxb | 4e-04 | ||
| 3crk_C | 87 | Crystal Structure Of The Pdhk2-L2 Complex. Length = | 6e-04 | ||
| 1zwv_A | 58 | Solution Structure Of The Subunit Binding Domain (H | 7e-04 |
| >pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase From Pseudomonas Fluorescens At 2.8 Angstroms Resolution. Analysis Of Redox And Thermostability Properties Length = 477 | Back alignment and structure |
|
| >pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From Azotobacter Vinelandii At 2.2 Angstroms Resolution. A Comparison With The Structure Of Glutathione Reductase Length = 476 | Back alignment and structure |
|
| >pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474 | Back alignment and structure |
|
| >pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470 | Back alignment and structure |
|
| >pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474 | Back alignment and structure |
|
| >pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495 | Back alignment and structure |
|
| >pdb|2QAE|A Chain A, Crystal Structure Analysis Of Trypanosoma Cruzi Lipoamide Dehydrogenase Length = 468 | Back alignment and structure |
|
| >pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455 | Back alignment and structure |
|
| >pdb|1JEH|A Chain A, Crystal Structure Of Yeast E3, Lipoamide Dehydrogenase Length = 478 | Back alignment and structure |
|
| >pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491 | Back alignment and structure |
|
| >pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455 | Back alignment and structure |
|
| >pdb|2EQ6|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 Length = 464 | Back alignment and structure |
|
| >pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233 | Back alignment and structure |
|
| >pdb|3II4|A Chain A, Structure Of Mycobacterial Lipoamide Dehydrogenase Bound To A Triazaspirodimethoxybenzoyl Inhibitor Length = 466 | Back alignment and structure |
|
| >pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458 | Back alignment and structure |
|
| >pdb|2A8X|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Mycobacterium Tuberculosis Length = 464 | Back alignment and structure |
|
| >pdb|1OJT|A Chain A, Structure Of Dihydrolipoamide Dehydrogenase Length = 482 | Back alignment and structure |
|
| >pdb|1BHY|A Chain A, Low Temperature Middle Resolution Structure Of P64k From Masc Data Length = 482 | Back alignment and structure |
|
| >pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428 | Back alignment and structure |
|
| >pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile Length = 463 | Back alignment and structure |
|
| >pdb|2GRT|A Chain A, Human Glutathione Reductase A34e, R37w Mutant, Oxidized Glutathione Complex Length = 461 | Back alignment and structure |
|
| >pdb|1GRT|A Chain A, Human Glutathione Reductase A34eR37W MUTANT Length = 478 | Back alignment and structure |
|
| >pdb|1ZK7|A Chain A, Crystal Structure Of Tn501 Mera Length = 467 | Back alignment and structure |
|
| >pdb|1TYP|A Chain A, Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0.28-Nm Resolution Length = 487 | Back alignment and structure |
|
| >pdb|3DJG|X Chain X, Catalytic Cycle Of Human Glutathione Reductase Near 1 A Resolution Length = 477 | Back alignment and structure |
|
| >pdb|1BWC|A Chain A, Structure Of Human Glutathione Reductase Complexed With Ajoene Inhibitor And Subversive Substrate Length = 478 | Back alignment and structure |
|
| >pdb|1TYT|A Chain A, Crystal And Molecular Structure Of Crithidia Fasciculata Trypanothione Reductase At 2.6 Angstroms Resolution Length = 487 | Back alignment and structure |
|
| >pdb|2AAQ|A Chain A, Crystal Structure Analysis Of The Human Glutahione Reductase, Complexed With Gopi Length = 479 | Back alignment and structure |
|
| >pdb|1XAN|A Chain A, Human Glutathione Reductase In Complex With A Xanthene Inhibitor Length = 461 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|2X50|A Chain A, Crystal Structure Of Trypanothione Reductase From Leishmania Infantum In Complex With Nadph And Silver Length = 510 | Back alignment and structure |
|
| >pdb|2JK6|A Chain A, Structure Of Trypanothione Reductase From Leishmania Infantum Length = 511 | Back alignment and structure |
|
| >pdb|2TPR|A Chain A, X-ray Structure Of Trypanothione Reductase From Crithidia Fasciculata At 2.4 Angstroms Resolution Length = 490 | Back alignment and structure |
|
| >pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488 | Back alignment and structure |
|
| >pdb|1GSN|A Chain A, Human Glutathione Reductase Modified By Dinitrosoglutathione Length = 478 | Back alignment and structure |
|
| >pdb|1FEA|A Chain A, Unliganded Crithidia Fasciculata Trypanothione Reductase At 2.2 Angstrom Resolution Length = 490 | Back alignment and structure |
|
| >pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517 | Back alignment and structure |
|
| >pdb|1GRG|A Chain A, Substrate Binding And Catalysis By Glutathione Reductase As Derived From Refined Enzyme: Substrate Crystal Structures At 2 Angstroms Resolution Length = 478 | Back alignment and structure |
|
| >pdb|1DNC|A Chain A, Human Glutathione Reductase Modified By Diglutathione-Dinitroso-Iron Length = 478 | Back alignment and structure |
|
| >pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450 | Back alignment and structure |
|
| >pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479 | Back alignment and structure |
|
| >pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione Reductase From Schistosoma Mansoni In Complex With Auranofin Length = 598 | Back alignment and structure |
|
| >pdb|4B1B|A Chain A, Crystal Structure Of Plasmodium Falciparum Oxidised Thioredoxin Reductase At 2.9 Angstrom Length = 542 | Back alignment and structure |
|
| >pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione Reductase (Smtgr) Length = 596 | Back alignment and structure |
|
| >pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni With The Reduced C-Terminal End Length = 598 | Back alignment and structure |
|
| >pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499 | Back alignment and structure |
|
| >pdb|3O0H|A Chain A, Crystal Structure Of Glutathione Reductase From Bartonella Henselae Length = 484 | Back alignment and structure |
|
| >pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242 | Back alignment and structure |
|
| >pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499 | Back alignment and structure |
|
| >pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450 | Back alignment and structure |
|
| >pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From Drosophila Melanogaster Length = 488 | Back alignment and structure |
|
| >pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, C-Terminal 8- Residue Truncation Length = 483 | Back alignment and structure |
|
| >pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase, Wild-Type Length = 482 | Back alignment and structure |
|
| >pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256 | Back alignment and structure |
|
| >pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466 | Back alignment and structure |
|
| >pdb|3IC9|A Chain A, The Structure Of Dihydrolipoamide Dehydrogenase From Colwellia Psychrerythraea 34h. Length = 492 | Back alignment and structure |
|
| >pdb|1XDI|A Chain A, Crystal Structure Of Lpda (Rv3303c) From Mycobacterium Tuberculosis Length = 499 | Back alignment and structure |
|
| >pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521 | Back alignment and structure |
|
| >pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513 | Back alignment and structure |
|
| >pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519 | Back alignment and structure |
|
| >pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519 | Back alignment and structure |
|
| >pdb|1ONF|A Chain A, Crystal Structure Of Plasmodium Falciparum Glutathione Reductase Length = 500 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463 | Back alignment and structure |
|
| >pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 | Back alignment and structure |
|
| >pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243 | Back alignment and structure |
|
| >pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 | Back alignment and structure |
|
| >pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262 | Back alignment and structure |
|
| >pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239 | Back alignment and structure |
|
| >pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 | Back alignment and structure |
|
| >pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl Coenzyme M Length = 523 | Back alignment and structure |
|
| >pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250 | Back alignment and structure |
|
| >pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80 | Back alignment and structure |
|
| >pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565 | Back alignment and structure |
|
| >pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79 | Back alignment and structure |
|
| >pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436 | Back alignment and structure |
|
| >pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437 | Back alignment and structure |
|
| >pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438 | Back alignment and structure |
|
| >pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113 | Back alignment and structure |
|
| >pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574 | Back alignment and structure |
|
| >pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574 | Back alignment and structure |
|
| >pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410 | Back alignment and structure |
|
| >pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98 | Back alignment and structure |
|
| >pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase Length = 319 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf Length = 521 | Back alignment and structure |
|
| >pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin Reductase Length = 325 | Back alignment and structure |
|
| >pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80 | Back alignment and structure |
|
| >pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide Reductase Ahpf From E.Coli Length = 310 | Back alignment and structure |
|
| >pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490 | Back alignment and structure |
|
| >pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408 | Back alignment and structure |
|
| >pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408 | Back alignment and structure |
|
| >pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From Entamoeba Histolytica Length = 314 | Back alignment and structure |
|
| >pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367 | Back alignment and structure |
|
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase Mutant C147a Length = 323 | Back alignment and structure |
|
| >pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3 Length = 323 | Back alignment and structure |
|
| >pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128 | Back alignment and structure |
|
| >pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106 | Back alignment and structure |
|
| >pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404 | Back alignment and structure |
|
| >pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of Dihydrolipoamide Branched Chaintransacylase Length = 70 | Back alignment and structure |
|
| >pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312 | Back alignment and structure |
|
| >pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87 | Back alignment and structure |
|
| >pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd) Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 58 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 866 | |||
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 0.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 0.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 0.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 0.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 0.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 0.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 0.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 0.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 0.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 0.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 0.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 0.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 0.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 0.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 0.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 0.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 0.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 1e-161 | |
| 3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase comp | 1e-158 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 1e-141 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 1e-138 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 1e-138 | |
| 1scz_A | 233 | E2, dihydrolipoamide succinyltransferase; COA-depe | 1e-136 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 1e-135 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 1e-135 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 1e-133 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 1e-133 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 1e-133 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 1e-133 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 1e-130 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 1e-130 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 1e-128 | |
| 3mae_A | 256 | 2-oxoisovalerate dehydrogenase E2 component, dihyd | 1e-127 | |
| 3rqc_A | 224 | Probable lipoamide acyltransferase; alpha beta fol | 1e-110 | |
| 3l60_A | 250 | Branched-chain alpha-keto acid dehydrogenase; stru | 1e-105 | |
| 1dpb_A | 243 | Dihydrolipoyl-transacetylase; dihydrolipoamide ace | 2e-89 | |
| 2ii3_A | 262 | Lipoamide acyltransferase component of branched-C | 3e-89 | |
| 3b8k_A | 239 | PDCE2;, dihydrolipoyllysine-residue acetyltransfer | 3e-81 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 3e-36 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 1e-35 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 5e-35 | |
| 1zy8_K | 229 | Pyruvate dehydrogenase protein X component, mitoch | 2e-34 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 2e-34 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 2e-34 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 6e-34 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 1e-33 | |
| 1yqz_A | 438 | Coenzyme A disulfide reductase; oxidoreductase; HE | 4e-33 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 5e-33 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 9e-33 | |
| 1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase c | 2e-31 | |
| 1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate | 4e-31 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 1e-24 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 3e-24 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 5e-24 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 3e-23 | |
| 1q23_A | 219 | Chloramphenicol acetyltransferase; CAT I, trimer, | 3e-23 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 5e-23 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 8e-23 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 4e-22 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 2e-21 | |
| 2l5t_A | 77 | Lipoamide acyltransferase; E2 lipoyl domain; NMR { | 4e-21 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 7e-21 | |
| 1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehy | 2e-19 | |
| 3cla_A | 213 | Type III chloramphenicol acetyltransferase; transf | 6e-19 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 6e-19 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 7e-18 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 3e-17 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 1e-16 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 1e-16 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 2e-16 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 2e-16 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 3e-04 | |
| 1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase COM | 8e-16 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 9e-16 | |
| 2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic | 3e-15 | |
| 2i9d_A | 217 | Chloramphenicol acetyltransferase; structural geno | 7e-15 | |
| 2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase comp | 8e-15 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 9e-15 | |
| 3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase COM | 3e-13 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 2e-12 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 1e-11 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 1e-10 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 3e-10 | |
| 2eq7_C | 40 | 2-oxoglutarate dehydrogenase E2 component; protein | 2e-09 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 2e-09 | |
| 2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, | 2e-09 | |
| 3rnm_E | 58 | Lipoamide acyltransferase component of branched-C | 2e-09 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 3e-09 | |
| 1bal_A | 51 | Dihydrolipoamide succinyltransferase; glycolysis; | 3e-09 | |
| 2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, | 2e-08 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 3e-08 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 4e-08 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 5e-08 | |
| 2coo_A | 70 | Lipoamide acyltransferase component of branched- c | 6e-08 | |
| 2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase comp | 7e-08 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 4e-07 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 9e-07 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 1e-06 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 1e-06 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 1e-06 | |
| 1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl dom | 1e-06 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 1e-06 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 1e-06 | |
| 1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, | 2e-06 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 2e-06 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 2e-06 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 2e-04 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 2e-06 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 1w85_I | 49 | Dihydrolipoyllysine-residue acetyltransferase comp | 4e-06 | |
| 1w4i_A | 62 | Pyruvate dehydrogenase E2; transferase, peripheral | 4e-06 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 4e-06 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 6e-06 | |
| 1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component | 1e-05 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 1e-05 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 1e-05 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 2e-05 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 2e-05 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 4e-05 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 7e-05 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 9e-05 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 1e-04 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 1e-04 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 2e-04 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 2e-04 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 2e-04 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 2e-04 | |
| 2f60_K | 64 | Pyruvate dehydrogenase protein X component; protei | 2e-04 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 3e-04 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 3e-04 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 3e-04 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 3e-04 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 3e-04 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 3e-04 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 3e-04 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 5e-04 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 5e-04 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 6e-04 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 7e-04 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 8e-04 |
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 726 bits (1876), Expect = 0.0
Identities = 217/479 (45%), Positives = 316/479 (65%), Gaps = 12/479 (2%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+ FDVIVIGAGPGGYVA+I+ AQLG KTA I+++K E ALGGTC NVGCIPSKALL
Sbjct: 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLD 61
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+S+ F SF +GI+T V +++ M+ RK+ I++ G+ L K N + F GH
Sbjct: 62 SSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHG 121
Query: 509 IFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
++++ + + + + +I+A+GSK P D+++I+ + GAL+
Sbjct: 122 KLLAG-----KKVEVTAADGSSQVLDTENVILASGSKPVEIPPAPVDQDVIVDSTGALDF 176
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
NVP KL +IGAGVIGLE+GS+W RLG+EVT+LE FL VDE++AK+A +L KQGL
Sbjct: 177 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGL 236
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
I+L ++ ++ + V + + + FDKL++A+GR P T +L G
Sbjct: 237 KILLGARVTGTEVKNKQVTVKFVDAEGEKSQA-----FDKLIVAVGRRPVTTDLLAADSG 291
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
+ ++E FI V+D C T++P +YAIGDVVRG MLAHKA EEG++VAE I+G K +N++
Sbjct: 292 VTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDL 351
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+P VIYT PEIA VGKTEQ LK ++ NVG+FPF A+ RA +T+G VK+++D K+D
Sbjct: 352 IPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTD 411
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
+LG+H+IGP A+EL+ + IA+EF S+ED+ + HP+LSEA+ EAA+++ +I+
Sbjct: 412 RVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHAIH 470
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 720 bits (1860), Expect = 0.0
Identities = 210/488 (43%), Positives = 308/488 (63%), Gaps = 21/488 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+NK+ DV++IG GP GYVA+I+ AQLGF TAC+++ LGGTC NVGCIPSKAL
Sbjct: 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG------KLGGTCLNVGCIPSKAL 55
Query: 447 LQTSHSFENVKNSFFEYGINTQ-NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
L SH F + + GI+ ++ +N+ + K++ +K+ GI LFKKNK+ ++
Sbjct: 56 LNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYK 115
Query: 506 GHAIFTGKIQNNFHEIQIIN--------KTKETITAKYIIIATGSKARSFPGVKFDENLI 557
G+ F + +I++ K + K II+ATGS+ FPG++ DE I
Sbjct: 116 GNGSFEDE-----TKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFPGIEIDEEKI 170
Query: 558 LSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKA 617
+S+ GAL + +PK+L IIG G+IGLE+GS++ RLGS+VT++E ++D E+AK
Sbjct: 171 VSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKAT 230
Query: 618 FHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677
L KQGL+ L+TK+ K N + ++ + T + + LL+A+GR P
Sbjct: 231 QKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTK-TNKQENLEAEVLLVAVGRRPYI 289
Query: 678 NNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737
L +KIGL+V++ ++++D + P+I +GDV GPMLAHKAEEEGI E +
Sbjct: 290 AGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKT 349
Query: 738 QKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMV 797
+N+N +P V+Y+ PE+A VGKTE+ LK+ I Y +G FPF ANSRA+ +T G V
Sbjct: 350 GHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFV 409
Query: 798 KILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAM 857
KIL D K++ ILG HIIGP A E+IAEA +A+E+ AS+ED+AR+CH HP+LSEA KEA M
Sbjct: 410 KILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANM 469
Query: 858 SIENRSIN 865
+ +++I+
Sbjct: 470 AAYDKAIH 477
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 719 bits (1858), Expect = 0.0
Identities = 219/481 (45%), Positives = 320/481 (66%), Gaps = 16/481 (3%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+ DV++IG GPGGYVA+I+ AQLGFKT CI++ ALGGTC NVGCIPSKAL
Sbjct: 3 GSDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG------ALGGTCLNVGCIPSKAL 56
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
L +SH + K+SF +G+ NV ++L M+ +K+ + GI LFKKNK+ + G
Sbjct: 57 LHSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKG 116
Query: 507 HAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
+ F EI + + K+IIIATGS +S PGV DE I+S+ GAL
Sbjct: 117 YGKFVSP-----SEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKIVSSTGAL 171
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+ +PKKL +IGAG IGLE+GS+W R+GSEVT++E +S + T+D EI K+ L KQ
Sbjct: 172 ALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQ 231
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ L TK+ + + + V + + +T I D +L++ GR P T+ LN+DK
Sbjct: 232 GMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIE---ADVVLVSAGRTPFTSGLNLDK 288
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINF 744
IG++ ++ I+VN+ TN+ +YAIGDV+ GPMLAHKAEE+G+ E+++G+ +++
Sbjct: 289 IGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDY 348
Query: 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMK 804
+ +P V+YT PE+ASVGKTE+ +K+ + Y VG FPF+ANSRA+ + G+VKI+++ +
Sbjct: 349 DKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKE 408
Query: 805 SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+D+ILG+HI+ P A ELI EA IA+++ ASSEDIAR+CH HP++SEA+KEAAM+ ++ I
Sbjct: 409 TDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPI 468
Query: 865 N 865
+
Sbjct: 469 H 469
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 716 bits (1850), Expect = 0.0
Identities = 211/504 (41%), Positives = 309/504 (61%), Gaps = 18/504 (3%)
Query: 366 LSYDHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDN 425
+ + H G + + F +D+IVIG+GPGGYV +I+ AQLG K A +++
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRS-- 58
Query: 426 EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNII 485
GGTC NVGCIPSKALL S F ++ G+ N LNLQKM+ K+ +
Sbjct: 59 ----TYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPKLNLQKMMAHKDATV 114
Query: 486 KKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSK 543
K N G+ FLFKKNKI F G G+ ++ + N+ ++ + AK ++IATGS
Sbjct: 115 KSNVDGVSFLFKKNKIDGFQGTGKVLGQ-----GKVSVTNEKGEEQVLEAKNVVIATGSD 169
Query: 544 ARSFPGVK--FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEM 601
PGV+ FDE I+S+ GAL + VP + ++G GVIGLE+GS+W RLG++VT++E
Sbjct: 170 VAGIPGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEF 229
Query: 602 SSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIIT 661
L +D E+AK+ +L KQG++ L K+ + + + + T +
Sbjct: 230 LDTILGGMDGEVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLD- 288
Query: 662 SIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLA 721
+ +LIA GR P+T+ L + K G+ ++ + ++ + +T+I +YAIGDVVRGPMLA
Sbjct: 289 --AEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGPMLA 346
Query: 722 HKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPF 781
HKAE+EG+ VAE I+GQ +N++ +P V+YT PE+ASVGKTE+ LK ++Y +G FPF
Sbjct: 347 HKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVASVGKTEEELKAAGVAYKIGKFPF 406
Query: 782 LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARI 841
AN RAR + +T G VKIL+D ++D +LG HIIG A E+I E + +EF SSED+ R
Sbjct: 407 TANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRT 466
Query: 842 CHVHPSLSEAMKEAAMSIENRSIN 865
CH HP++SEA+KEAA+S + I+
Sbjct: 467 CHAHPTMSEAVKEAALSTFFKPIH 490
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 708 bits (1830), Expect = 0.0
Identities = 198/475 (41%), Positives = 286/475 (60%), Gaps = 22/475 (4%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+D++VIGAGPGGYVA+IR AQLG K +++ K ALGGTC VGCIPSKALL+T+
Sbjct: 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEK------ALGGTCLRVGCIPSKALLETT 55
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
K G + V L+L ++ K+ +++ N G+ FLFKKN I G A F
Sbjct: 56 ERIYEAKKGLL--GAKVKGVELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARF 113
Query: 511 TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVP 570
+ ++ + E + A+YI+IATGS P + D ++++ AL VP
Sbjct: 114 LSE-----RKVLVEET-GEELEARYILIATGSAPLIPPWAQVDYERVVTSTEALSFPEVP 167
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIIL 630
K+L ++G GVIGLE+G +W RLG+EV +LE L T+D E+++ A + KQGL I
Sbjct: 168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRT 227
Query: 631 NTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN 690
++ + + + D++L+A+GR P T L+++ GL +
Sbjct: 228 GVRVTAVVPEAKGARVELEGGEVLE--------ADRVLVAVGRRPYTEGLSLENAGLSTD 279
Query: 691 ENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFV 750
E I V+++ T +P+IYAIGDVVRGPMLAHKA EEGI EH+ +++ A+P V
Sbjct: 280 ERGRIPVDEHLRTRVPHIYAIGDVVRGPMLAHKASEEGIAAVEHMVRGFGHVDYQAIPSV 339
Query: 751 IYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILG 810
+YT PEIA+VG TE+ LK I Y VG FP+ A+ RAR +GET G +K+L+ K+D ILG
Sbjct: 340 VYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAMGETEGFIKVLAHAKTDRILG 399
Query: 811 IHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
+H IG +++AEA +A+ F+AS+ED+ R H HPSLSE +KEAA++ R I+
Sbjct: 400 VHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAALAAWERPIH 454
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 708 bits (1830), Expect = 0.0
Identities = 217/482 (45%), Positives = 312/482 (64%), Gaps = 20/482 (4%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
+DV+VIG GPGGYVASI+ AQLG KTAC+++ ALGGTC NVGCIPSKALL
Sbjct: 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRG------ALGGTCLNVGCIPSKALLHA 55
Query: 450 SHSFENVKNSFFEYGINT-QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+H + + +F YG+ + VT++ KM ++K +K G+ +LFKKNK+ ++ G
Sbjct: 56 THLYHDAHANFARYGLMGGEGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEG 115
Query: 509 IFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
F H I++ +E + K IIATGS+ P + FDE ++LS+ GAL +
Sbjct: 116 SFETA-----HSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDEKVVLSSTGALAL 170
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK-QG 625
VPK + +IG GVIGLE+GS+W RLG+EVT++E + T+DE++ L K +
Sbjct: 171 PRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEK 230
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
+ + +TK+ N ++V + K N K E +T + LL+++GR P T L +DKI
Sbjct: 231 MKFMTSTKVVGGTNNGDSVSLEVEGK--NGKRETVT--CEALLVSVGRRPFTGGLGLDKI 286
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVV-RGPMLAHKAEEEGIMVAEHISGQKHSINF 744
+ NE F+ + D+ ET+IP++YAIGDVV +GPMLAHKAE+EG+ AE ++G+ +N+
Sbjct: 287 NVAKNERGFVKIGDHFETSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKPGHVNY 346
Query: 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMK 804
+P VIYT PE+ASVGK+E LKK ++Y VG FPF ANSRA+ + G VK+L D
Sbjct: 347 GVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKA 406
Query: 805 SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+D ILG+HI+ A ELI EA +A+E+ ASSED+ R CH HP++SEA+KEA M++ ++I
Sbjct: 407 TDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACMALFAKTI 466
Query: 865 NY 866
N+
Sbjct: 467 NF 468
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 702 bits (1815), Expect = 0.0
Identities = 223/483 (46%), Positives = 308/483 (63%), Gaps = 20/483 (4%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
+ DV VIG+GPGGYVA+I+ AQLGFKT CI++ + LGGTC NVGCIPSKALL
Sbjct: 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNE------TLGGTCLNVGCIPSKALLNN 59
Query: 450 SHSFENVKNSFF-EYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
SH + + F GI V LNL KM+E+K+ +K GI LFK+NK+ +G+
Sbjct: 60 SHYYHMAHGTDFASRGIEMSEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYG 119
Query: 509 IFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
TGK +++ + I K I+IATGS+ FPG+ DE+ I+S+ GAL +
Sbjct: 120 KITGK-----NQVTATKADGGTQVIDTKNILIATGSEVTPFPGITIDEDTIVSSTGALSL 174
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNKQG 625
VP+K+ +IGAGVIG+E+GS+W+RLG++VT +E + +D EI+K +L KQG
Sbjct: 175 KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG 234
Query: 626 LNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
LNTK+ + + ++ S I D LL+ IGR P T NL +++
Sbjct: 235 FKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVIT---CDVLLVCIGRRPFTKNLGLEE 291
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINF 744
+G++++ I VN +T IPNIYAIGDVV GPMLAHKAE+EGI+ E ++G I++
Sbjct: 292 LGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDY 351
Query: 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMK 804
N +P VIYT PE+A VGK+E+ LK+ I Y VG FPF ANSRA+ +T GMVKIL
Sbjct: 352 NCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKS 411
Query: 805 SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI-ENRS 863
+D +LG HI+GP A E++ EA +A+E+ AS EDIAR+CH HP+LSEA +EA ++ +S
Sbjct: 412 TDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASFGKS 471
Query: 864 INY 866
IN+
Sbjct: 472 INF 474
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 695 bits (1795), Expect = 0.0
Identities = 155/484 (32%), Positives = 241/484 (49%), Gaps = 19/484 (3%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+DV+V+G GPGGY A+ A G K A ++ +K LGG C NVGCIPSKALL
Sbjct: 5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK------TLGGVCLNVGCIPSKALLH 58
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+ + V++ GI L++ + K+ ++ + G+ + K K+ G
Sbjct: 59 NAAVIDEVRH-LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDG 117
Query: 509 IFTGK-------IQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNK 561
F + +E K+ + K IIA GS+ P + D I+ +
Sbjct: 118 QFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPR-IIDSS 176
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
GAL + VP KL IIG G+IGLE+G+++ LGS + ++EM + D ++ K
Sbjct: 177 GALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQN 236
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
+ NI++NTK ++ ++ V + + +D +L+A GR PN ++
Sbjct: 237 EYRFDNIMVNTKTVAVEPKEDGVYVTFEGA----NAPKEPQRYDAVLVAAGRAPNGKLIS 292
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS 741
+K G+ V + FI V+ TN+P+IYAIGD+V PMLAHKA EG + AE+ +G K
Sbjct: 293 AEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAY 352
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILS 801
+ +P V YT PE+A VG+TE K FP+ A+ RA G K++
Sbjct: 353 FDARVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIF 412
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIEN 861
D ++ I+G I+GP ++I E +AIE + DI + H HP+L E++ AA
Sbjct: 413 DAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALG 472
Query: 862 RSIN 865
+
Sbjct: 473 TCTD 476
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 685 bits (1769), Expect = 0.0
Identities = 185/468 (39%), Positives = 273/468 (58%), Gaps = 20/468 (4%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+ +V+GAGPGGYVA+IR AQLG K +++ LGG C NVGCIPSKAL+ S
Sbjct: 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-------NLGGVCLNVGCIPSKALISAS 56
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
H +E K+ E GI +NVT++ K+ E K +++KK G+ L K NK++ G A F
Sbjct: 57 HRYEQAKH-SEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF 115
Query: 511 TGKIQNNFHEIQIINKT-KETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV 569
+ ++++N +T T K IIATGS+ P KF IL + GAL + V
Sbjct: 116 VDA-----NTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSNR-ILDSTGALNLGEV 169
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
PK L +IG G IG+E+G+ + G++VTILE + L+ ++++A L K+G+ ++
Sbjct: 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVV 229
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689
N + ++ V + Y +T+ I D +L+ +GR PNT+ L +++IG+K+
Sbjct: 230 TNALAKGAEEREDGVTVTYEANG---ETKTID--ADYVLVTVGRRPNTDELGLEQIGIKM 284
Query: 690 NENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPF 749
I V+ C T++PNI+AIGD+V GP LAHKA EG + AE I+G ++++ A+P
Sbjct: 285 TNRGLIEVDQQCRTSVPNIFAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDYVAIPA 344
Query: 750 VIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEIL 809
V+++ PE ASVG EQ K I FPF AN RA L +T G +K++ + I+
Sbjct: 345 VVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVII 404
Query: 810 GIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAM 857
G IIGP AS++IAE +AIE ++EDIA H HP+L E EAA
Sbjct: 405 GAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAE 452
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 683 bits (1765), Expect = 0.0
Identities = 182/484 (37%), Positives = 278/484 (57%), Gaps = 25/484 (5%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP 442
M+ K +D+IVIG GPGGY A+IR AQLG K ++ +GG C NVGCIP
Sbjct: 1 MT--PMKTYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAG-------EVGGVCLNVGCIP 51
Query: 443 SKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK 502
+KALL + + ++K +G+ L+L+K+ ++ ++KK G+ L K N ++
Sbjct: 52 TKALLHAAETLHHLKV-AEGFGL-KAKPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVE 109
Query: 503 FFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKG 562
G A G E+++ E AK +I+ATGS+ G F E+ + +
Sbjct: 110 LLRGFARLVGP-----KEVEV---GGERYGAKSLILATGSEPLELKGFPFGED-VWDSTR 160
Query: 563 ALEMI-NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
AL++ +PK+L +IG G +GLE+G ++RRLG+EVT++E L D E A L
Sbjct: 161 ALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRAL 220
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
K+G+ + TK + K+ + + + E + DK+L+A+GR P T L
Sbjct: 221 EKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGG-EGEEVV--VDKVLVAVGRKPRTEGLG 277
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS 741
++K G+KV+E FI VN ET++P +YAIGD R P+LAHKA EG++ AE+ +G+ +
Sbjct: 278 LEKAGVKVDERGFIRVNARMETSVPGVYAIGDAARPPLLAHKAMREGLIAAENAAGKDSA 337
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILS 801
++ +P V+YT PE A VG TE+ K+ VG FP A+ RA LG GMVK++
Sbjct: 338 FDYQ-VPSVVYTSPEWAGVGLTEEEAKRAGYKVKVGKFPLAASGRALTLGGAEGMVKVVG 396
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIEN 861
D ++D +LG+ I+GP A ELIAEA +A+E A+ D+A H HP+LSE++ EAA +
Sbjct: 397 DEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAEAFHK 456
Query: 862 RSIN 865
++I+
Sbjct: 457 QAIH 460
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 677 bits (1750), Expect = 0.0
Identities = 154/479 (32%), Positives = 252/479 (52%), Gaps = 27/479 (5%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+++IG GPGGYVA+IR QLG T + E ALGGTC N+GCIPSKAL+
Sbjct: 4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLV-------EGQALGGTCLNIGCIPSKALIH 56
Query: 449 TSHSFENVKNS--FFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
+ F GI+ + L++ + + K+ I+ + +G+ L KK+ +K HG
Sbjct: 57 VAEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHG 116
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
A ++++ + I +++++ATGS + P + ++S+ AL
Sbjct: 117 WAKVLDG-----KQVEV---DGQRIQCEHLLLATGSSSVELPMLPLGGP-VISSTEALAP 167
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+P+ L ++G G IGLE+G +R+LG++V+++E L T D E+ L K G+
Sbjct: 168 KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI 227
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+ L + + L+ K ++ E D++L+A+GR P T N++ +
Sbjct: 228 ALHLGHSVEGYE---NGCLLANDGKGGQLRLE-----ADRVLVAVGRRPRTKGFNLECLD 279
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNA 746
LK+N I +++ C+T++ N++AIGDV PMLAH+A +G MVAE I+G+ A
Sbjct: 280 LKMNGA-AIAIDERCQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAA 338
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
+ V +T PE+ VGKT + + + V FPF AN RA L SG V++++ +
Sbjct: 339 IAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNH 398
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
ILG +G SEL ++E A ED+A H HP+L EA++EAA+ +++
Sbjct: 399 LILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALH 457
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 670 bits (1732), Expect = 0.0
Identities = 164/480 (34%), Positives = 251/480 (52%), Gaps = 19/480 (3%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
++DV+V+GAGPGGYVA+IR AQLG TA + E GG C NVGCIPSKALL+
Sbjct: 2 THYDVVVLGAGPGGYVAAIRAAQLGLSTAIV-------EPKYWGGVCLNVGCIPSKALLR 54
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+ +GI + VT + +R + + +G+ FL KKNKI HG+
Sbjct: 55 NAELVHIFTKDAKAFGI-SGEVTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYG 113
Query: 509 IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMIN 568
F N + + + E++T IIATGS R PG N +++ + +
Sbjct: 114 TFADA---NTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSAN-VVTYEEQILSRE 169
Query: 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628
+PK + I GAG IG+E G + + G +VTI+E L D +++K+ K G+ I
Sbjct: 170 LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTI 229
Query: 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
+ TK+ I V + + + + +K+L AIG PN +DK G+
Sbjct: 230 LTATKVESIADGGSQVTVTVTKDG---VAQELK--AEKVLQAIGFAPNVEGYGLDKAGVA 284
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK--HSINFNA 746
+ + I V+D TN+ +IYAIGDV LAH AE +G++ AE I+G + +
Sbjct: 285 LTDRKAIGVDDYMRTNVGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRM 344
Query: 747 LPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSD 806
LP + P +AS G TEQ + V FPF AN++A +G+ SG VK+++D K
Sbjct: 345 LPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHG 404
Query: 807 EILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866
E+LG H++G +EL+ E +A + ++ ++AR H HP++SEA++E + IN+
Sbjct: 405 ELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFHGLVGHMINF 464
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 635 bits (1641), Expect = 0.0
Identities = 104/474 (21%), Positives = 210/474 (44%), Gaps = 17/474 (3%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
++++G GP GY A++ A +T + + +GG C+PSK + ++
Sbjct: 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVI----DCDGIGGAAVLDDCVPSKTFIAST 58
Query: 451 HSFENVKNS-FFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAI 509
++ + + I+ + ++L ++ R + ++ I ++ G
Sbjct: 59 GLRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGE 118
Query: 510 FTG-KIQNNFHEIQII--NKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
H I+ + + A +++ATG+ R P + D IL+ + ++
Sbjct: 119 LIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSAQPDGERILTWRQLYDL 178
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+P L ++G+GV G E + LG VT++ + L D + A ++G+
Sbjct: 179 DALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGV 238
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+ N + + VL+ ++ + L+ IG +PNT+ L ++++G
Sbjct: 239 RLFKNARAASVTRTGAGVLVTMTDG------RTVE--GSHALMTIGSVPNTSGLGLERVG 290
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFN 745
+++ N++ V+ T IYA GD LA A +G + H G+ I
Sbjct: 291 IQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLR 350
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+ ++T PEIA+VG + + +++ + P N+RA++ G VKI +
Sbjct: 351 TVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRST 410
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI 859
++G ++ P+ASELI +A++ R + ++A+ V+PSLS ++ EAA +
Sbjct: 411 GVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRL 464
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 632 bits (1633), Expect = 0.0
Identities = 116/486 (23%), Positives = 219/486 (45%), Gaps = 35/486 (7%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
N DV +IG G G A + K I E A G TC VGC+PSK L+
Sbjct: 7 INVDVAIIGTGTAGMGAYRAAKKHTDKVVLI-------EGGAYGTTCARVGCMPSKLLIA 59
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLER----KNNIIKKNNSGILFLFKKNKIKFF 504
+ + + +GI +++N + +++R ++ + + +++KI+
Sbjct: 60 AADASYHASQ-TDLFGIQVDRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIR-- 116
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
G A F + H +Q+ + AK I+IATGS+ + + +L+N
Sbjct: 117 -GFAKFLDE-----HTLQV--DDHSQVIAKRIVIATGSRPNYPEFLAAAGSRLLTNDNLF 168
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
E+ ++PK + + G GVIGLE+G RLG V + S + N DEE+ + A N++
Sbjct: 169 ELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE 228
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
++ ++ V + Y +KS TE F +L A GR N + L ++
Sbjct: 229 F-YFDAKARVISTIEKEDAVEVIYFDKSGQKTTES----FQYVLAATGRKANVDKLGLEN 283
Query: 685 IGLKVNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS-- 741
+++++ N + ++ +T++ +I+ GD L H+A ++G + +
Sbjct: 284 TSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLLHEAADDGKVAGTNAGAYPVIAQ 343
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKH-----NISYNVGIFPFLANSRARILGETSGM 796
A V++T P++ASVG + + ++ +Y VG F R+R++G+ G+
Sbjct: 344 GQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGL 403
Query: 797 VKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
+ + +D S E LG + GP A + A + + + + + + HP + E ++ A
Sbjct: 404 LNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTAL 463
Query: 857 MSIENR 862
+ +
Sbjct: 464 RDAQQK 469
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 628 bits (1623), Expect = 0.0
Identities = 121/488 (24%), Positives = 221/488 (45%), Gaps = 36/488 (7%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M+ +DV+VIGAG GY + RLA+ + D LGG C GC+PSK +
Sbjct: 1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKG------ELGGNCLYSGCVPSKTV 54
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIK-KNNSGILFLFKKNKIKFFH 505
+ + + I + L+ + +RK+ + + + + + + F+
Sbjct: 55 REVIQTAWRLT------NIANVKIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETLTFYK 108
Query: 506 GHAIFTGKIQNNFHEIQI--INKTKETITAKYIIIATGSKARS--FPGVKFDENLILSNK 561
G+ + + + +Y+IIA+G++ PGV++
Sbjct: 109 GYVKIKDP-----THVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFG 163
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV-DEEIAKKAFHL 620
+P+ + IIGAG IGLEI SI+R +G + I+EM L T+ D++I L
Sbjct: 164 YKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNT---L 220
Query: 621 LNKQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679
L+ LNI N+ + ++K K++ + YS K + + I + +++A GR P
Sbjct: 221 LSILKLNIKFNSPVTEVKKIKDDEYEVIYSTK--DGSKKSIF--TNSVVLAAGRRPVIPE 276
Query: 680 LNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739
+IGL +++ I+V++ +TNIPN++A GD H A I A +I
Sbjct: 277 -GAREIGLSISKT-GIVVDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANG 334
Query: 740 HSINF---NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGM 796
+++ ++P IYT P ++ VG +K I + + A+I G+ G+
Sbjct: 335 MPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGIEIVEAEYNMEEDVSAQIYGQKEGV 394
Query: 797 VKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856
+K++ + S ++G +IG + LI E +A+ + +++ +A HPS +E + A
Sbjct: 395 LKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIISYTA 454
Query: 857 MSIENRSI 864
+
Sbjct: 455 RKVIEGHH 462
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 613 bits (1582), Expect = 0.0
Identities = 89/511 (17%), Positives = 190/511 (37%), Gaps = 39/511 (7%)
Query: 375 GREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
V+ + + +D I IG G G S L +G + +D W LGG+
Sbjct: 28 DGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP------FLGGS 81
Query: 435 CTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF 494
C + C+P + + +Y + K + + GI+
Sbjct: 82 CPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMN 141
Query: 495 LFKKNKI---KFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVK 551
K ++ + A H ++ + AK +I+A G+ +
Sbjct: 142 FQSKEQLNLEYILNCPAKVIDN-----HTVEA---AGKVFKAKNLILAVGAGPGTLDVPG 193
Query: 552 FDENLIL-SNKGALEMINVP-KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV 609
+ + E+ P + ++G +E G + G +L +
Sbjct: 194 VNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIK 253
Query: 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLI 669
D E + +QG+ II + + I+ + + + N + I D + +
Sbjct: 254 DNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIE---TDFVFL 310
Query: 670 AIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGI 729
+G P + L +GL + ++VN+ +T++PN+YA+GD++ GPM KA + G
Sbjct: 311 GLGEQPRSAELA-KILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGC 369
Query: 730 MVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPF-------- 781
A ++ G+K S P ++T E++ +G E+ + P
Sbjct: 370 YAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNV 429
Query: 782 --------LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRA 833
+ + + SG KI+ D K+ ++LG H +G A + + I+
Sbjct: 430 ALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGL 489
Query: 834 SSEDIARICHVHPSLSEAMKEAAMSIENRSI 864
+ +++ + + + + ++ + + ++++
Sbjct: 490 TVDELGDMDELFLNPTHFIQLSRLRAGSKNL 520
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 608 bits (1570), Expect = 0.0
Identities = 120/476 (25%), Positives = 218/476 (45%), Gaps = 22/476 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M V VIG+G A+++ + G + I E +GGTC NVGC+PSK +
Sbjct: 1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLI-------ERGTIGGTCVNVGCVPSKIM 53
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSG--ILFLFKKNKIKFF 504
++ +H + S F+ GI T++ K+L ++ + + L I
Sbjct: 54 IRAAHIAHLRRESPFDGGIAATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVV 113
Query: 505 HGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
HG A F +++ + + ++ATG+ P E+ ++ AL
Sbjct: 114 HGEARFKDD---QSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGLKESPYWTSTEAL 170
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+P++L +IG+ V+ LE+ + RLGS+VT+L ++ D I + +
Sbjct: 171 ASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNT-LFFREDPAIGEAVTAAFRAE 229
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
G+ ++ +T+ + ++ ++ DKLL+A GR PNT +L +D
Sbjct: 230 GIEVLEHTQASQVAHMDGEFVLTTTHG---------ELRADKLLVATGRTPNTRSLALDA 280
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINF 744
G+ VN I+++ T+ PNIYA GD P + A G A +++G +++
Sbjct: 281 AGVTVNAQGAIVIDQGMRTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDL 340
Query: 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMK 804
A+P V++T P++A+VG +E I + RA +T G +K++ +
Sbjct: 341 TAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEG 400
Query: 805 SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860
S ++G+ + P A ELI A +AI R + +++A + ++ E +K AA +
Sbjct: 401 SHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFN 456
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 478 bits (1233), Expect = e-161
Identities = 130/515 (25%), Positives = 239/515 (46%), Gaps = 71/515 (13%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+D+IVIG G GG A+ R A+ K A +++ + LGGTC NVGC+P K + +
Sbjct: 3 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-------LGGTCVNVGCVPKKIMFNAA 55
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
+ ++N YG +T + NL ++ER++ I++ N+ K+K+ + G A F
Sbjct: 56 SVHDILEN-SRHYGFDT-KFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASF 113
Query: 511 TGK------IQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL 564
+ + + +E + + I+IA G+K FP VK EN I S+
Sbjct: 114 LSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV-FPPVKGIENTISSD-EFF 171
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
+ KK+ I+G+G I +E+ ++ +RLG + I + L DE + + + K
Sbjct: 172 NI-KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKN 230
Query: 625 GLNIILNTKIHDI-KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNID 683
+NI+ + +I K++ +N+ I+ S+ FD ++ +GR P+T NL ++
Sbjct: 231 NINIVTFADVVEIKKVSDKNLSIHLSDGRIYEH-------FDHVIYCVGRSPDTENLKLE 283
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGD------------------------------ 713
K+ ++ N NN+I+V++N T++ NIYA+GD
Sbjct: 284 KLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKEN 342
Query: 714 ----VVRGPMLAHKAEEEGIMVAEHISGQKHS-INFNALPFVIYTFPEIASVGKTEQYLK 768
+ L A G ++A+ + +K N+ +P VI++ P I ++G +E+
Sbjct: 343 VTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLIPTVIFSHPPIGTIGLSEEAAI 402
Query: 769 ----KHNISYNVGIFPFL--ANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELI 822
K N+ F L + + +K++ K + I G+HIIG A E++
Sbjct: 403 QIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLNADEIV 462
Query: 823 AEAVIAIEFRASSEDIARICHVHPSLSEA---MKE 854
+A++ A+ +D +HP+ +E ++
Sbjct: 463 QGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQP 497
|
| >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 | Back alignment and structure |
|---|
Score = 467 bits (1205), Expect = e-158
Identities = 127/411 (30%), Positives = 213/411 (51%), Gaps = 35/411 (8%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
MA E K+P + E I E ++ W K G+ V ++ L +++ DK ++E+P+P G + +I
Sbjct: 1 MA-FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEI 59
Query: 61 IITDGSIVTSNQVIALIDTD-----------------------------ISKLSSKTEIK 91
++ +G++ T Q + +D + ++
Sbjct: 60 LVPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAA 119
Query: 92 NKKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK-VLSSIKNINEEK 150
+ N I MPS +K + ++I + GTGK+GR++KED+ + K
Sbjct: 120 EAEAGPNRRVIAMPSVRKYAREKGVDIRLVQ-GTGKNGRVLKEDIDAFLAGGAKPAPAAA 178
Query: 151 QEKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDL 210
+EK P + E MS +R IA+ ++ S+ + +T +E ++ ++
Sbjct: 179 EEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAH 238
Query: 211 RLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVD--GNNIIYHKYYDIGIAIS 268
R K+K + +KL F+ + VKA+VSAL++YP++N S+D II YY+IGIA
Sbjct: 239 RKKFKAIAAE-KGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAAD 297
Query: 269 SSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLS 328
+ RGL+VP++++AD I + ++INE KA+D KL P EM G + TI+N G G
Sbjct: 298 TDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWF 357
Query: 329 TPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAV 379
TP+IN P+ AILG+ I ++ IV + +V P+ +LS+DHR+IDG A
Sbjct: 358 TPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQ 408
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 427 bits (1100), Expect = e-141
Identities = 134/489 (27%), Positives = 230/489 (47%), Gaps = 23/489 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID--EWKDNEENFALGGTCTNVGCIPSK 444
++FD++VIG G GG + AQLG K A D E + LGGTC NVGCIP K
Sbjct: 3 GQQSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKK 62
Query: 445 ALLQTSHSFENVKNSFFEYGIN-TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKF 503
+ Q + ++++ YG Q V N + M E N +K N G + K+K+
Sbjct: 63 LMHQAALLGGMIRDAH-HYGWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKY 121
Query: 504 FHGHAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNK 561
F+ A F + H ++ ++K ++A++I+IATG + R VK +++
Sbjct: 122 FNIKASFVDE-----HTVRGVDKGGKATLLSAEHIVIATGGRPRYPTQVKGALEYGITSD 176
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
+ P K ++GA + LE +G + T++ M S L D++++ +
Sbjct: 177 DIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVM-MRSIPLRGFDQQMSSLVTEHM 235
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
G + IK N L + K + T FD +L AIGR+P T LN
Sbjct: 236 ESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGT--FDTVLWAIGRVPETRTLN 293
Query: 682 IDKIGLKVNE-NNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISGQK 739
++K G+ N N IIV+ T++P+IYAIGDV G P L A + G ++A+ + G+
Sbjct: 294 LEKAGISTNPKNQKIIVDAQEATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKS 353
Query: 740 HS-INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETS---G 795
+ ++++ +P ++T E VG +E+ + +V ++ + +
Sbjct: 354 STLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQC 413
Query: 796 MVKILSDMKSDE-ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854
+K++ + + +LG+H +GP A E+ + I+ AS + + +HP+ SE +
Sbjct: 414 YIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEV-- 471
Query: 855 AAMSIENRS 863
+ I RS
Sbjct: 472 VKLHISKRS 480
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 419 bits (1080), Expect = e-138
Identities = 112/479 (23%), Positives = 222/479 (46%), Gaps = 27/479 (5%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+ +FD+ VIG+G GG A+ LG + A +E++ +GGTC GC+P K
Sbjct: 23 GSFDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEYR-------IGGTCVIRGCVPKKLY 75
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
S + S +G + N +K++ KN I + + + + +
Sbjct: 76 FYASQYAQEFSKSI-GFGWKYADPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES 134
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
A+F + H +++ E I+A+ I+IATG+K S +K + + SN ++
Sbjct: 135 RAVFVDE-----HTLELSVT-GERISAEKILIATGAKIVSNSAIKGSDLCLTSN-EIFDL 187
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+PK + I+G G IG+E +I+ LG + T+L L D ++ + + +G+
Sbjct: 188 EKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGI 247
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
+II + ++ + + +N T D++++A GR+PNT L +++ G
Sbjct: 248 SIIYEATVSQVQSTENCYNVVLTNGQTIC--------ADRVMLATGRVPNTTGLGLERAG 299
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQKHSINFN 745
+KVNE ++V++ TN+ +I+A+GDV L A + + ++ + +++
Sbjct: 300 VKVNEFGAVVVDEKMTTNVSHIWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTSTTPDYD 359
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+ +++ PEI +VG +E+ + F +K++ D +S
Sbjct: 360 LITTAVFSQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGES 419
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEA---MKEAAMSIEN 861
++G H++G A E+ I+++ + + + + VHP++SE M + + EN
Sbjct: 420 RIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMYKPSYVYEN 478
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 418 bits (1076), Expect = e-138
Identities = 127/469 (27%), Positives = 222/469 (47%), Gaps = 30/469 (6%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M K++D I IG G GG + R A G K A I+ + LGGTC NVGC+P K +
Sbjct: 1 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-------LGGTCVNVGCVPKKVM 53
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
+ E + +YG +T N + ++ + I + ++ + KN + G
Sbjct: 54 WHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG 113
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
A F +++ ETITA +I+IATG + S P + E I S+ G +
Sbjct: 114 FARFVDA-----KTLEV---NGETITADHILIATGGRP-SHPDIPGVEYGIDSD-GFFAL 163
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
+P+++ ++GAG IG+E+G + LG++ + EM L + D I++ ++N +G
Sbjct: 164 PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP 223
Query: 627 NIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI 685
+ N + N + L + + + D L+ AIGR P +N+N++
Sbjct: 224 QLHTNAIPKAVVKNTDGSLTLELEDGRSET--------VDCLIWAIGREPANDNINLEAA 275
Query: 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS--IN 743
G+K NE +I+V+ TNI IYA+GD L A G ++E + K ++
Sbjct: 276 GVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLD 335
Query: 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF--PFLANSRARILGETSGMVKILS 801
++ +P V+++ P I +VG TE ++ V ++ F A A +K++
Sbjct: 336 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVC 395
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
++I+GIH IG E++ +A++ A+ +D +HP+ +E
Sbjct: 396 VGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAE 444
|
| >1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233 | Back alignment and structure |
|---|
Score = 402 bits (1036), Expect = e-136
Identities = 130/216 (60%), Positives = 176/216 (81%)
Query: 167 SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKL 226
+R E+ VPM+RLR +AERLL+++ ++A+LTTFNE+NM+ I+DLR +Y + FEK H ++L
Sbjct: 1 ARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRL 60
Query: 227 GFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSI 286
GFMSF+VKAVV ALK+YP +NAS+DG++++YH Y+D+ +A+S+ RGLV P+LR+ DT+ +
Sbjct: 61 GFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGM 120
Query: 287 ADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIK 346
ADIEKKI E K +D KL E+++GG FTI+NGGVFGS++STPIINPPQSAILG+HAIK
Sbjct: 121 ADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIK 180
Query: 347 KRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSL 382
R + N V I P+ Y ALSYDHR+IDGRE+V L
Sbjct: 181 DRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFL 216
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 411 bits (1059), Expect = e-135
Identities = 112/483 (23%), Positives = 211/483 (43%), Gaps = 29/483 (6%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP 442
MS ++D+ VIG G GG + A LG K A +E++ GGTC GC+P
Sbjct: 1 MS---AFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEFR-------YGGTCVIRGCVP 50
Query: 443 SKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK 502
K + S E+ +++ +G + K++ K I + +
Sbjct: 51 KKLYVYASQFAEHFEDAA-GFGWTVGESRFDWAKLVAAKEQEIARLEGLYRKGLANAGAE 109
Query: 503 FFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKG 562
A G + ++++ +T+TA+ I+IA G + E I SN
Sbjct: 110 ILDTRAELAGP-----NTVKLLAS-GKTVTAERIVIAVGGHPSPHDALPGHELCITSN-E 162
Query: 563 ALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622
A ++ +P+ + I G G I +E +I+ LG + T++ L+ D+++ + +
Sbjct: 163 AFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAME 222
Query: 623 KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNI 682
++G+ I+ I + + + + + K + D++++A+GR+PNTN L +
Sbjct: 223 EKGIRILCEDIIQSVSADADGRRVATTMKHG-------EIVADQVMLALGRMPNTNGLGL 275
Query: 683 DKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQKHS 741
+ G++ NE IIV+ T+ P IYA+GDV L A E + E S
Sbjct: 276 EAAGVRTNELGAIIVDAFSRTSTPGIYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTS 335
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILS 801
+ + + +++ PEI +VG TE+ + V F + ++K++
Sbjct: 336 PDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKATLSGRKEKTIMKLVV 395
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEA---MKEAAMS 858
+ +++G HI+G A E+ I++ + +D R VHP+ +E M + +
Sbjct: 396 NAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMYQPSYR 455
Query: 859 IEN 861
+ N
Sbjct: 456 VRN 458
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 415 bits (1070), Expect = e-135
Identities = 122/493 (24%), Positives = 221/493 (44%), Gaps = 27/493 (5%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACID--EWKDNEENFALGGTCTNVGCIPSKA 445
++D+IVIG G GG A A+ G KTA +D E + LGGTC NVGCIP K
Sbjct: 105 KYDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKL 164
Query: 446 LLQTSHSFENVKNSFFEYG--INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKF 503
+ Q ++++ +G ++ ++ N M+E + I N G + N++ +
Sbjct: 165 MHQAGLLSHALEDAE-HFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTY 223
Query: 504 FHGHAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNK 561
+ HE+QI +K TIT II+ATG + +P + +++
Sbjct: 224 LNAKGRLISP-----HEVQITDKNQKVSTITGNKIILATGERP-KYPEIPGAVEYGITSD 277
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
+ P K +IGA + LE LG +VT++ + S L D+++A+K +
Sbjct: 278 DLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVM-VRSILLRGFDQQMAEKVGDYM 336
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKT-----EIITSIFDKLLIAIGRIPN 676
G+ +IK K N VK + F+ ++ A+GR P
Sbjct: 337 ENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQ 396
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHI 735
+ + + +G+K+++N ++ D+ +T + N+YAIGD+ G P L A + G +A +
Sbjct: 397 LSKVLCETVGVKLDKNGRVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRL 456
Query: 736 -SGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGI----FPFLANSRARIL 790
+G +++ + ++T E + G +E+ + ++ + F L + A
Sbjct: 457 FAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHRE 516
Query: 791 GETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
M + + +LG+H++GP A E+ +AI+ A+ D R +HP+ SE
Sbjct: 517 DNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPTCSE 576
Query: 851 AMKEAAMSIENRS 863
+ + +S
Sbjct: 577 TF--TTLHVTKKS 587
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 406 bits (1046), Expect = e-133
Identities = 123/471 (26%), Positives = 226/471 (47%), Gaps = 22/471 (4%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
++D +VIG G GG ++ R A+LG + A ++ K LGGTC NVGC+P K +
Sbjct: 17 AVASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-------LGGTCVNVGCVPKKVM 69
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
T+ E + + +YG + N + + E+++ + + N+ K+ I+ G
Sbjct: 70 WNTAVHSEFMHDHA-DYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG 128
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFD--ENLILSNKGAL 564
HA FT + I + + TA +I+IATG + + I S+ G
Sbjct: 129 HAAFTSD-----PKPTI-EVSGKKYTAPHILIATGGMPSTPHESQIPGASLGITSD-GFF 181
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624
++ +P + I+GAG I +E+ I LGS+ +++ L + D I+ L
Sbjct: 182 QLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENA 241
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNID 683
G+ ++ +++ ++K + ++ + D LL AIGR+PNT +L+++
Sbjct: 242 GVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLN 301
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS-- 741
K+G++ ++ IIV++ TN+ IYA+GDV +L A G +A + K
Sbjct: 302 KLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSK 361
Query: 742 INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF--PFLANSRARILGETSGMVKI 799
+++N +P V+++ P I +VG TE NV + F A +T ++K+
Sbjct: 362 LDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKM 421
Query: 800 LSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850
+ K ++++GIH+ G E++ +A++ A+ D +HP+ SE
Sbjct: 422 VCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSE 472
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 406 bits (1046), Expect = e-133
Identities = 125/489 (25%), Positives = 225/489 (46%), Gaps = 28/489 (5%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK---DNEENFALGGTCTNVGCIPSK 444
+ ++D+IVIG G G + G + AC+D K + +GGTC NVGCIP K
Sbjct: 7 SYDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKK 66
Query: 445 ALLQTSHSFENVKNSFFEYGIN-TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKF 503
+ Q S E V + YG N + + K+++ N IK N + K+++
Sbjct: 67 LMHQASLLGEAVHEAA-AYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEY 125
Query: 504 FHGHAIFTGKIQNNFHEIQIINK-TKETITAKYIIIATGSKARSFPGVKFDENLILSNKG 562
+G F H + K + TITA+ +IA G + R +P + +++
Sbjct: 126 INGLGSFVDS-----HTLLAKLKSGERTITAQTFVIAVGGRPR-YPDIPGAVEYGITSDD 179
Query: 563 ALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622
+ P K ++GAG IGLE + LG E T++ + S L D+++A+ +
Sbjct: 180 LFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVM-VRSIVLRGFDQQMAELVAASME 238
Query: 623 KQGLNIILNTKIHDI-KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
++G+ + T + K + +L+ Y N T ++E + +D +L AIGR ++LN
Sbjct: 239 ERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDV---YDTVLWAIGRKGLVDDLN 295
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHI-SGQK 739
+ G+ V + I V+ TN+ NIYA+GD++ G P L A G ++A + G
Sbjct: 296 LPNAGVTVQ-KDKIPVDSQEATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGST 354
Query: 740 HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGI----FPFLANSRARILGETSG 795
+++ + ++T E A VG +E+ K + + + + +
Sbjct: 355 QRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQ-KSVRYC 413
Query: 796 MVKILSDMKSDE-ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854
+K +++ D+ + G+H IGP+A E+I A++ + + +HP+ +E
Sbjct: 414 YLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTR 473
Query: 855 AAMSIENRS 863
++I RS
Sbjct: 474 --LAITKRS 480
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 407 bits (1049), Expect = e-133
Identities = 121/492 (24%), Positives = 229/492 (46%), Gaps = 27/492 (5%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID--EWKDNEENFALGGTCTNVGCIPSK 444
+ ++D+I+IG G GG A+ AQ G K +D + LGGTC NVGCIP K
Sbjct: 29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKK 88
Query: 445 ALLQTSHSFENVKNSFFEYGIN-TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKF 503
+ Q + + +++S YG + V + +M+E N I N G ++ K+ +
Sbjct: 89 LMHQAALLGQALQDSR-NYGWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVY 147
Query: 504 FHGHAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVKFDENLILSNK 561
+ + F G H I+ N ++ +A+ +IATG + R + G+ D+ +S+
Sbjct: 148 ENAYGQFIGP-----HRIKATNNKGKEKIYSAERFLIATGERPR-YLGIPGDKEYCISSD 201
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
+ P K ++GA + LE +G +VT++ + S L D+++A K +
Sbjct: 202 DLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVM-VRSILLRGFDQDMANKIGEHM 260
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKT-EIITSIFDKLLIAIGRIPNTNNL 680
+ G+ I ++ + + + + EII ++ +++AIGR T +
Sbjct: 261 EEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKI 320
Query: 681 NIDKIGLKVNENN-FIIVNDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHI-SG 737
++ +G+K+NE I V D +TN+P IYAIGD++ L A + G ++A+ + +G
Sbjct: 321 GLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG 380
Query: 738 QKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF-----PFLANSRARILGE 792
++ +P ++T E + G +E+ + N+ ++ P +R
Sbjct: 381 STVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSR--DN 438
Query: 793 TSGMVKILSDMKSDE-ILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEA 851
KI+ + K +E ++G H++GP A E+ A++ + + + +HP +E
Sbjct: 439 NKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAEV 498
Query: 852 MKEAAMSIENRS 863
+S+ RS
Sbjct: 499 F--TTLSVTKRS 508
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 404 bits (1041), Expect = e-133
Identities = 127/494 (25%), Positives = 235/494 (47%), Gaps = 38/494 (7%)
Query: 380 LSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG 439
+ MS K++D +VIG G GG ++ R A G KT ++ LGGTC NVG
Sbjct: 2 VEFMS-TNTKHYDYLVIGGGSGGVASARRAASYGAKTLLVEAKA-------LGGTCVNVG 53
Query: 440 CIPSKALLQTSHSFENVKNSFFEYGIN------TQNVTLNLQKMLERKNNIIKKNNSGIL 493
C+P K + S V ++ EYG+ +++T N + ++++ + + N
Sbjct: 54 CVPKKVMWYASDLATRVSHAN-EYGLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQ 112
Query: 494 FLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINK--TKETITAKYIIIATGSKARSFPGVK 551
+K K+ G A F +++ + T E +A +I++ATG KA +
Sbjct: 113 KNLEKEKVDVVFGWARFNKD-----GNVEVQKRDNTTEVYSANHILVATGGKAIFPENIP 167
Query: 552 FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDE 611
E S+ G + PKK+ ++GAG IG+E+ ++ LGSE ++ L DE
Sbjct: 168 GFELGTDSD-GFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDE 226
Query: 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAI 671
I K+G+N+ +KI ++ N E + + I D+L+ I
Sbjct: 227 CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDS---KSIDD--VDELIWTI 281
Query: 672 GRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMV 731
GR + + + +G+K+N ++ II ++ TN+PNIY++GDVV L A G +
Sbjct: 282 GRKSHLG-MGSENVGIKLNSHDQIIADEYQNTNVPNIYSLGDVVGKVELTPVAIAAGRKL 340
Query: 732 AEHISGQK----HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF--PFLANS 785
+ + G + +++ +P VI++ PE S+G +E+ + N+ ++ F A
Sbjct: 341 SNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGKENIKVYNSKFTAMY 400
Query: 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVH 845
A + ++ KI+ +++++G+HI+G ++E++ +AI+ A+ D +H
Sbjct: 401 YAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIH 460
Query: 846 PSLSEA---MKEAA 856
P+ +E M+ +
Sbjct: 461 PTSAEELVTMRGSH 474
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 398 bits (1024), Expect = e-130
Identities = 122/481 (25%), Positives = 222/481 (46%), Gaps = 30/481 (6%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
M ++FD+I IG G GG + + A G + A I+ LGGTC NVGC+P K +
Sbjct: 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESKA-------LGGTCVNVGCVPKKVM 53
Query: 447 LQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG 506
SH E V+++ +G+ TL+ +++ ++ I NS ++ I G
Sbjct: 54 WYASHLAEAVRDAP-GFGVQASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG 112
Query: 507 HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEM 566
HA F H I++ + ++A +I+IATG + P + E I S+ G +
Sbjct: 113 HARFVDA-----HTIEV---EGQRLSADHIVIATGGRPI-VPRLPGAELGITSD-GFFAL 162
Query: 567 INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626
PK++ IIGAG IG+E+ + R GSEVT++ + L D ++ ++ QG+
Sbjct: 163 QQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGI 222
Query: 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIG 686
L + ++ + + + + + FD ++ A+GR PNT +L ++ G
Sbjct: 223 ETHLEFAVAALERDAQGTTLVAQDGTR-------LEGFDSVIWAVGRAPNTRDLGLEAAG 275
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI-SGQKHS-INF 744
++V N + + TN+P +YA+GD+ L A G +AE + GQ +++
Sbjct: 276 IEVQSNGMVPTDAYQNTNVPGVYALGDITGRDQLTPVAIAAGRRLAERLFDGQSERKLDY 335
Query: 745 NALPFVIYTFPEIASVGKTE-QYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDM 803
+ +P V++ P ++ VG +E + ++ V F A +K++
Sbjct: 336 DNIPTVVFAHPPLSKVGLSEPEARERLGDVLTVYETSFTPMRYALNEHGPKTAMKLVCAG 395
Query: 804 KSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRS 863
++G+H+IG A E++ +A++ A+ D +HP +E + + R
Sbjct: 396 PEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEEL--VTLKEPVRR 453
Query: 864 I 864
Sbjct: 454 P 454
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 398 bits (1024), Expect = e-130
Identities = 127/498 (25%), Positives = 222/498 (44%), Gaps = 37/498 (7%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWK--DNEENFALGGTCTNVGCIPS 443
M+K FD++VIGAG GG A A L G + A +D ALGGTC NVGC+P
Sbjct: 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPK 63
Query: 444 KALLQTSHSFENVKNSFFEYG--INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNK- 500
K ++ + ++++ S +G + +V N +K++ KN + N +F +
Sbjct: 64 KLMVTGAQYMDHLRESA-GFGWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEG 122
Query: 501 IKFFHGHAIFTGKIQNNFHEIQI------INKTKETITAKYIIIATGSKARSFPGVKFDE 554
+ FF G K + + + + KE + A +I++ATGS + P + E
Sbjct: 123 LDFFLGWGSLESK-----NVVVVRETADPKSAVKERLQADHILLATGSWPQ-MPAIPGIE 176
Query: 555 NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNFLNTVDE 611
+ I SN A + P+++ +G G I +E I+ G +VT+ ++ L DE
Sbjct: 177 HCISSN-EAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDE 235
Query: 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIA 670
I ++ L G+ I+ N + +N + + + + T D +++A
Sbjct: 236 TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLD--------VDVVMMA 287
Query: 671 IGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIM 730
IGRIP TN+L + +G+K+ + V++ TN+PNIYAIGD+ ML A EG
Sbjct: 288 IGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAA 347
Query: 731 VAEHI-SGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARI 789
+ + + + + + +++ P I + G E+ K V + F
Sbjct: 348 LVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAKEFEKVAVYMSSFTPLMHNIS 407
Query: 790 LGETSGMV-KILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSL 848
+ V KI+++ +LG+H++G A E+I + + A D VHP+
Sbjct: 408 GSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTS 467
Query: 849 SEA---MKEAAMSIENRS 863
+E M+ +
Sbjct: 468 AEELCSMRTPSYYYVKGE 485
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 392 bits (1009), Expect = e-128
Identities = 125/496 (25%), Positives = 221/496 (44%), Gaps = 39/496 (7%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWK--DNEENFALGGTCTNVGCIPSK 444
++ +D++VIGAG GG A A L + A ID K ALGGTC NVGC+P K
Sbjct: 1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKK 60
Query: 445 ALLQTSHSFENVKNSFFEYG--INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNK-I 501
++ ++ + ++ S +G ++ ++V N + ++ KN + N +F + +
Sbjct: 61 LMVTGANYMDTIRESA-GFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGL 119
Query: 502 KFFHGHAIFTGKIQNNFHEIQI------INKTKETITAKYIIIATGSKARSFPGVKFDEN 555
F G H + + + ET+ +YI++ATGS + G++ D+
Sbjct: 120 TFHQGFGALQDN-----HTVLVRESADPNSAVLETLDTEYILLATGSWPQ-HLGIEGDDL 173
Query: 556 LILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNFLNTVDEE 612
I SN A + PK+ +G G I +E I+ G +V + L D E
Sbjct: 174 CITSN-EAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSE 232
Query: 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAI 671
+ K+ L G+N+ + + N + + + + + +D +++AI
Sbjct: 233 LRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEAD--------YDVVMLAI 284
Query: 672 GRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMV 731
GR+P + L ++K G++V +N I V+ +TN+ NIYAIGDV ML A EG
Sbjct: 285 GRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAF 344
Query: 732 AEHI-SGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARIL 790
+ + + + + + + +++ P + G E+ K V F I
Sbjct: 345 VDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHN-IS 403
Query: 791 G--ETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSL 848
G MV+I+++ E+LG+H++G + E+I I ++ A D VHP+
Sbjct: 404 GSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTS 463
Query: 849 SEA---MKEAAMSIEN 861
+E M+ A E
Sbjct: 464 AEELCSMRTPAYFYEK 479
|
| >3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256 | Back alignment and structure |
|---|
Score = 382 bits (983), Expect = e-127
Identities = 80/216 (37%), Positives = 130/216 (60%)
Query: 167 SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKL 226
+ ++ +P++ +R IA+ + S+ E++ ++ R KD F+KE L
Sbjct: 15 AAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSL 74
Query: 227 GFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSI 286
+ +FF+KAV ALK++P +N++ G+ II H +I IAI++ L VP+++NAD SI
Sbjct: 75 TYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSI 134
Query: 287 ADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIK 346
I ++I+E KA++ KL +M GGTFT+++ G FGS+ S IIN PQ+AIL V +I
Sbjct: 135 KGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIV 194
Query: 347 KRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSL 382
KR ++ ++ + +R + LS DHRI+DG A L
Sbjct: 195 KRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFL 230
|
| >3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224 | Back alignment and structure |
|---|
Score = 336 bits (863), Expect = e-110
Identities = 77/215 (35%), Positives = 118/215 (54%), Gaps = 15/215 (6%)
Query: 167 SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKL 226
EE + M LR I +++ +++ T E+++ S++ + K N K+
Sbjct: 3 PGREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK-----ARNRKV 57
Query: 227 GFMSFFVKAVVSALKQYPIINASVDGNN--IIYHKYYDIGIAISSSRGLVVPILRNADTM 284
F + V S LKQYP +NA D I KYY+IGIA+ + GL V ++++AD
Sbjct: 58 TVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRK 117
Query: 285 SIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHA 344
S+ +I +I++ ++A++NKL +E+ TFTI+N G G ++STPIIN P+ AILGVH
Sbjct: 118 SMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHR 177
Query: 345 IKKRVIVENNNVVIRPINYFALSYDHRIIDGREAV 379
I +R R Y +LS DHR+IDG A
Sbjct: 178 ILER--------EGRKYMYLSLSCDHRLIDGAVAT 204
|
| >3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250 | Back alignment and structure |
|---|
Score = 324 bits (833), Expect = e-105
Identities = 58/214 (27%), Positives = 105/214 (49%), Gaps = 9/214 (4%)
Query: 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFM 229
+ P+ + +AE++ S E+ ++ LR ++ ++
Sbjct: 14 PDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVSAA-----PEITPF 68
Query: 230 SFFVKAVVSALKQYPIINASVD----GNNIIYHKYYDIGIAISSSRGLVVPILRNADTMS 285
+ ++ +V ALK I+N++ G + H+ +G ++ RGL+VP++ +A +
Sbjct: 69 ALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKN 128
Query: 286 IADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAI 345
++ ++ E I A++ L P E+ G TFT+SN G G P+IN P++AILG+ AI
Sbjct: 129 TRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLGAI 188
Query: 346 KKRVIVENNNVVIRPINYFALSYDHRIIDGREAV 379
K R +V VV RP +DHR++DG +
Sbjct: 189 KPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVA 222
|
| >1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 2e-89
Identities = 73/212 (34%), Positives = 106/212 (50%), Gaps = 3/212 (1%)
Query: 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFM 229
E VPM+RL A L +S N +T F ++ + R+ K EK VKL +
Sbjct: 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKA-GVKLTVL 73
Query: 230 SFFVKAVVSALKQYPIINASVD--GNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIA 287
+KA LK+ P N+S+ G +I KY IG A+ + GL+VP++RN D S+
Sbjct: 74 PLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLL 133
Query: 288 DIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKK 347
+ + E KA+ KL + M G FTIS+ G G TPI+N P+ AILGV
Sbjct: 134 QLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASM 193
Query: 348 RVIVENNNVVIRPINYFALSYDHRIIDGREAV 379
+ + + R + +LSYD R+I+G A
Sbjct: 194 QPVWDGKAFQPRLMLPLSLSYDCRVINGAAAA 225
|
| >2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262 | Back alignment and structure |
|---|
Score = 282 bits (724), Expect = 3e-89
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 5/213 (2%)
Query: 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFM 229
+ P+ + + + + +E+++ ++ LR + K +KL FM
Sbjct: 31 DRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIAFA-RGIKLSFM 88
Query: 230 SFFVKAVVSALKQYPIINASVD--GNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIA 287
FF+KA L Q+PI+NASVD NI Y ++IGIA+ + +GL+VP ++N SI
Sbjct: 89 PFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIF 148
Query: 288 DIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKK 347
+I ++N +L ++ GGTFT+SN G G + P+I PP+ AI + IK
Sbjct: 149 EIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKA 208
Query: 348 R-VIVENNNVVIRPINYFALSYDHRIIDGREAV 379
E V I + S DHRIIDG
Sbjct: 209 LPRFNEKGEVCKAQIMNVSWSADHRIIDGATVS 241
|
| >3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 3e-81
Identities = 68/215 (31%), Positives = 108/215 (50%), Gaps = 4/215 (1%)
Query: 173 VPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFF 232
+P+S +R IA+RL+QS+ ++NM ++ +R + E K+ F
Sbjct: 15 IPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFI 72
Query: 233 VKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKK 292
+KA A + P N+S I + D+ +A+S+ GL+ PI+ NA + I
Sbjct: 73 IKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIAND 132
Query: 293 INEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVE 352
+ KA++ KL P E GGTFTISN G+FG + IINPPQ+ IL + A + +++
Sbjct: 133 VVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPA 192
Query: 353 NNN--VVIRPINYFALSYDHRIIDGREAVLSLMSF 385
+N + + LS DHR++DG L F
Sbjct: 193 DNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEF 227
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 3e-36
Identities = 86/358 (24%), Positives = 155/358 (43%), Gaps = 52/358 (14%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDEN-LILSN-- 560
E+ INK ++TIT K +I++ G+K S PG++ + L N
Sbjct: 114 SEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVP 173
Query: 561 -----KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK 615
K ++ P+ +IG G IG+E+ R G EVT++EM++ + +D E+A
Sbjct: 174 DTDRIKAYIDEKK-PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAA 232
Query: 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675
+ + ++ + + + ++ + S ++T+++ ++AIG P
Sbjct: 233 YVHEHMKNHDVELVFEDGV--DALEENGAVVRLKSGSV-IQTDML-------ILAIGVQP 282
Query: 676 NTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAE 725
++ GL + I VN+ +T+ P+IYAIGD + LA A
Sbjct: 283 ESSLAK--GAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPAN 340
Query: 726 EEGIMVAEHISGQKHSINFNAL-PFVIYTFP-EIASVGKTEQYLKKHNISYNVGIFPFLA 783
+G M+A+ I G S+ L V F +A+ G E+ LK+ NI Y V A
Sbjct: 341 RQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLTVATTGLNEKILKRLNIPYEVVHVQ--A 398
Query: 784 NSRARILGETSGM-VKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIA 839
NS A + + +K++ + S +I G +G + + AI+ + D+
Sbjct: 399 NSHAGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLP 456
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 1e-35
Identities = 71/368 (19%), Positives = 139/368 (37%), Gaps = 73/368 (19%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDENLILSN--- 560
HE+ ++ K+ + A+ ++IATG + + G +L
Sbjct: 114 HEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPD 173
Query: 561 ----KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKK 616
LE + + IIG G IGLE+ + LG +V ++E + + D ++A+
Sbjct: 174 AERILKTLETNK-VEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEY 232
Query: 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
+ +K + I+ N + K N + V+T+ T D +L+++G PN
Sbjct: 233 IYKEADKHHIEILTNENVKAFKGN---------ERVEAVETDKGTYKADLVLVSVGVKPN 283
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAEE 726
T+ L + ++ N I VN +TN+ ++YA GD + A +
Sbjct: 284 TDFL--EGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANK 341
Query: 727 EGIMVAEHISGQKHSINFNALPFVIYTFP-------------EIASVGKTEQYLKKHNIS 773
+G + ++ ++ F +A G E+ K +I
Sbjct: 342 QGRLAGLNMLDKRR------------AFKGTLGTGIIKFMNLTLARTGLNEKEAKGLHIP 389
Query: 774 YNVGIFPFLANSRARILGETSGM-VKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEF 831
Y + + A + +K+L + ++LG +IG + I +A+
Sbjct: 390 YKTVKVD--STNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFN 447
Query: 832 RASSEDIA 839
+ S D+
Sbjct: 448 KMSIHDLE 455
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 5e-35
Identities = 71/357 (19%), Positives = 137/357 (38%), Gaps = 52/357 (14%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDENLILSN--- 560
H++ ++ +TI K +I+ TGSK PG+ + N
Sbjct: 79 HQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYND 138
Query: 561 -KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-NTVDEEIAKKAF 618
K E K + IIG+G IG E+ + V +++ L D+E
Sbjct: 139 AKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILA 198
Query: 619 HLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678
G+N++L +K+ + + ++ + +K++I ++ IG PNT
Sbjct: 199 KDYEAHGVNLVLGSKVAAFEEVDDEIITKTLDGKE-IKSDIA-------ILCIGFRPNTE 250
Query: 679 NLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAEEEG 728
L K + + +N II ++ ++ +I+A GD LA A +G
Sbjct: 251 LL---KGKVAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQG 307
Query: 729 IMVAEHISGQKH----SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784
+V +++ K + + + L T S G K +N+ + I N
Sbjct: 308 RLVGLNLTEDKVKDMGTQSSSGLKLYGRT---YVSTGINTALAKANNLKVSEVIIA--DN 362
Query: 785 SRAR-ILGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIA 839
R +L ++ ++ D K+ ILG + S+ + I+ + + +D+A
Sbjct: 363 YRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLA 419
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 2e-34
Identities = 78/370 (21%), Positives = 139/370 (37%), Gaps = 57/370 (15%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDENLILSN--- 560
HE+ I++ + +T + ++++ G+ PGV L N
Sbjct: 79 HEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPD 138
Query: 561 ----KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKK 616
++M N + ++G G IGLE+ LG + T+LE++ + VD E+A
Sbjct: 139 MDRILQTIQMNN-VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGF 197
Query: 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-----------FD 665
A + QG+++ L T + ++ + + + + I + D
Sbjct: 198 AHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETD 257
Query: 666 KLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGP 718
L++AIG P T GL + E I VN +T+ P IYA+GD V
Sbjct: 258 LLIMAIGVRPETQLAR--DAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQA 315
Query: 719 M---LAHKAEEEGIMVAEHISGQKH----SINFNALPFVIYTFPEIASVGKTEQYLKKHN 771
LA A +G M A+++ G++ + + + GK E+ LK+
Sbjct: 316 CLVPLAGPANRQGRMAADNMFGREERYQGTQGTAICKVFDLA---VGATGKNEKQLKQAG 372
Query: 772 ISYNVGIFPFLANSRARILGETSGM-VKILSDMKSDEILGIHIIGPM-ASELIAEAVIAI 829
I++ S A + K+L D I G +G + I +A
Sbjct: 373 IAFEKVYVH--TASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQ 430
Query: 830 EFRASSEDIA 839
+ E +
Sbjct: 431 RAGMTVEQLQ 440
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 2e-34
Identities = 66/363 (18%), Positives = 136/363 (37%), Gaps = 58/363 (15%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKAR--SFPGVKFDENLILSN--- 560
I++ T+ + +++A GSKA G+ ++N
Sbjct: 87 TRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDE 146
Query: 561 ----KGALEMINVPKKLCIIGAGVIGLEIG-SIWRRLGSEVTILEMSSNFLNT-VDEEIA 614
+ A+ K I+G G IGLE+ S+ G + T++E++ + + ++
Sbjct: 147 AEFVQHAISAGE-VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLS 205
Query: 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674
+ H L K + + K+ ++ V ++K T + +++ ++A G
Sbjct: 206 QMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRT-LDADLV-------ILAAGVS 257
Query: 675 PNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKA 724
PNT GL+++ IIV+ T+ P+I+A GD V P L A
Sbjct: 258 PNTQLAR--DAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMA 315
Query: 725 EEEGIMVAEHISGQKH----SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFP 780
+G ++ +++ ++ A+ + + G T + +
Sbjct: 316 NRQGRVIGTNLADGDATFPGAVGSWAVKLFEGS---ASGAGLTVEGALREGYDAVNVHVE 372
Query: 781 FLANSRARILGETSGM-VKILSDMKSDEILGIHIIGPMASEL---IAEAVIAIEFRASSE 836
RA E + M ++++ D + +LGI + L I + + + E
Sbjct: 373 --QFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVE 430
Query: 837 DIA 839
DI+
Sbjct: 431 DIS 433
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 134 bits (341), Expect = 6e-34
Identities = 65/369 (17%), Positives = 129/369 (34%), Gaps = 75/369 (20%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKARS--FPGVKFDENLILSN--- 560
EI I + +T K +II+ G+ PG D ++
Sbjct: 77 TEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQW 136
Query: 561 ----KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAK 615
K + +IG+G IG+E + + G +VT++++ L +D+E
Sbjct: 137 AIKLKQKTVDPE-VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTD 195
Query: 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675
+ + I + + + + V T+ D +++A+G P
Sbjct: 196 VLTEEMEANNITIATGETVERYEGD---------GRVQKVVTDKNAYDADLVVVAVGVRP 246
Query: 676 NTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAE 725
NT L K L+++ N I ++ T+ P+++A+GD + LA A
Sbjct: 247 NTAWL---KGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNAR 303
Query: 726 EEGIMVAEHISGQKHSINFNALPFVIYTFP-------------EIASVGKTEQYLKKHNI 772
++G +++ FP + AS G E +K
Sbjct: 304 KQGRFAVKNLEEPVK------------PFPGVQGSSGLAVFDYKFASTGINEVMAQKLGK 351
Query: 773 SYNVGIFPFLANSRAR-ILGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIE 830
+ + K++ D ++ +ILG ++ + I +AI+
Sbjct: 352 ETKAVTVV--EDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQ 409
Query: 831 FRASSEDIA 839
+ + ED+A
Sbjct: 410 AKMTIEDLA 418
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-33
Identities = 65/355 (18%), Positives = 130/355 (36%), Gaps = 53/355 (14%)
Query: 519 HEIQIINKTKETITAK-----------YIIIATGSKARS--FPGVKFDENLILSN----K 561
E+ ++ + I +I+ATG+ S G + ++ L
Sbjct: 79 REVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGAL 138
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHL 620
A+ ++ + + +IGAG IG+E ++ V + E N L D+E+ +
Sbjct: 139 AAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKS 198
Query: 621 LNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL 680
L KQ + + I+ N ++ +++ + + + A+ P L
Sbjct: 199 LEKQAVIFHFEETVLGIE-ETANGIVLETSEQE-ISCDSG-------IFALNLHPQLAYL 249
Query: 681 NIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAEEEGIM 730
++ N + I V+ +T++PN++AIGD + L + A G++
Sbjct: 250 ---DKKIQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLV 306
Query: 731 VAEHISGQKH----SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSR 786
VA ++ + H S+ Y +AS G TE + I
Sbjct: 307 VANNLEEKTHRFIGSLRTMGTKVGDYY---LASTGLTETEGLFFPQTLASIIV----RQP 359
Query: 787 ARI-LGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIA 839
A T + K++ D + +LG + E I ++I+ + D+
Sbjct: 360 APPLQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLL 414
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 4e-33
Identities = 76/361 (21%), Positives = 138/361 (38%), Gaps = 66/361 (18%)
Query: 519 HEIQIINKTKETITAK-------------YIIIATGSKARSFPGVKFDENLILSN----- 560
HE+ IN ++T++ +I++ G+ A G + D L N
Sbjct: 79 HEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASAN-SLGFESDITFTLRNLEDTD 137
Query: 561 --KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF 618
++ K+ ++GAG + LE+ G T++ S +D ++ +
Sbjct: 138 AIDQFIKANQ-VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPIL 196
Query: 619 HLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678
L+K+ + LN +I IN + D ++ +G PN+
Sbjct: 197 DELDKREIPYRLNEEI--NAINGNEIT-------FKSGKVEHY---DMIIEGVGTHPNSK 244
Query: 679 NLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAEEEG 728
+ +K++ FI VND ETN+PNIYAIGD+ P LA A
Sbjct: 245 FIE--SSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAA 302
Query: 729 IMVAEHISGQKHSINFNALPF-------VIYTFP-EIASVGKTEQYLKKHNISYNVGIFP 780
+VAE I+G + + F ++ F ASVG LK+ +
Sbjct: 303 SIVAEQIAGN------DTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYKMVE---- 352
Query: 781 FLANSRARILGETSGM-VKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDI 838
+ A S + +++ D + +IL +G A + I +A+ + + +++
Sbjct: 353 VTQGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDEL 412
Query: 839 A 839
Sbjct: 413 T 413
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 5e-33
Identities = 63/341 (18%), Positives = 130/341 (38%), Gaps = 45/341 (13%)
Query: 526 KTKETITAKY--IIIATGSKAR--SFPGVKFDENLILSN-------KGALEMINVPKKLC 574
+ + ++ ++ A G+ + + GV + +E + +
Sbjct: 94 ENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYK-VENVV 152
Query: 575 IIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTK 633
IIG G IG+E+ + G VT++ L + D+E+ L K+ +N+ L
Sbjct: 153 IIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKL-KKHVNLRLQEI 211
Query: 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENN 693
I+ +E V ++ K E++ ++A G PN ++G+++ E
Sbjct: 212 TMKIE-GEERVEKVVTDAGE-YKAELV-------ILATGIKPNIELAK--QLGVRIGETG 260
Query: 694 FIIVNDNCETNIPNIYAIGDVV-------RGPM---LAHKAEEEGIMVAEHISGQKH--- 740
I N+ +T++ N+YA GDV + LA + G + +I+G++
Sbjct: 261 AIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFP 320
Query: 741 -SINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGM-VK 798
+ F+ I G TE K A++R + +K
Sbjct: 321 GVLGTAVTKFMDVE---IGKTGLTEMEALKEGYDVRTAFIK--ASTRPHYYPGGREIWLK 375
Query: 799 ILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIA 839
+ D +++ +LG+ ++G I A + +++D
Sbjct: 376 GVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAF 416
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 9e-33
Identities = 73/369 (19%), Positives = 133/369 (36%), Gaps = 65/369 (17%)
Query: 519 HEIQIINKTKETITAK-----------YIIIATGSKARS--FPGV---KFDENLILSNKG 562
+Q I+ +T+TA +I ATGS+ G + + +
Sbjct: 113 SPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLEN 172
Query: 563 ALEMINV--------------PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT 608
+ K++ ++GAG IG+E+ ++R G EV ++++ L
Sbjct: 173 LQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG 232
Query: 609 V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKL 667
D ++ + + G+ + + ++ V ++K+ +++
Sbjct: 233 YYDRDLTDLMAKNMEEHGIQLAFGETVKEVA-GNGKVEKIITDKNE-YDVDMV------- 283
Query: 668 LIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV-------RGPM- 719
++A+G PNT + + N +VN ET+IP +YAIGD R
Sbjct: 284 ILAVGFRPNTTLG---NGKIDLFRNGAFLVNKRQETSIPGVYAIGDCATIYDNATRDTNY 340
Query: 720 --LAHKAEEEGIMVAEHISGQKH----SINFNALPFVIYTFPEIASVGKTEQYLKKHNIS 773
LA A GI+ A + G N + + S G T + K+
Sbjct: 341 IALASNAVRTGIVAAHNACGTDLEGIGVQGSNGISIYGLH---MVSTGLTLEKAKRLGFD 397
Query: 774 YNVGIFPFLANSRARI--LGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIE 830
V + N + G +KI+ D S ILG + S I +AI+
Sbjct: 398 AAVTEYT--DNQKPEFIEHGNFPVTIKIVYDKDSRRILGAQMAAREDVSMGIHMFSLAIQ 455
Query: 831 FRASSEDIA 839
+ E +A
Sbjct: 456 EGVTIEKLA 464
|
| >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-31
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
I++K P ESI++ T+ WHKK GE V R+E ++DIETDKV++E+ A DG+I +I+
Sbjct: 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61
Query: 64 DGSIVTSNQVIALIDT 79
+G V S +++ +
Sbjct: 62 EGDTVLSGELLGKLTE 77
|
| >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 4e-31
Identities = 34/77 (44%), Positives = 58/77 (75%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
+ +++ +P L ES+++AT+ WHKK G+ VVR+E L++IETDKV+LE+PA DGI++ ++
Sbjct: 1 SSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVL 60
Query: 62 ITDGSIVTSNQVIALID 78
+G+ VTS Q++ +
Sbjct: 61 EDEGTTVTSRQILGRLR 77
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-24
Identities = 53/242 (21%), Positives = 99/242 (40%), Gaps = 33/242 (13%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLI--------LSNKGAL-EMINVPKKLCIIGAG 579
+ +++ATG + R P L + + + +L +IG G
Sbjct: 99 RALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGG 158
Query: 580 VIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIK 638
IGLE+ + + VT+L+ ++ L ++ HL + G++I T++ +
Sbjct: 159 YIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFE 218
Query: 639 INKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIV 697
++ + K T V E T + D ++ IG IPN GL+V +N I++
Sbjct: 219 MSTDQ------QKVTAVLCEDGTRLPADLVIAGIGLIPNCELA--SAAGLQV--DNGIVI 268
Query: 698 NDNCETNIPNIYAIGDVVRGPMLAHK----------AEEEGIMVAEHISGQKHSINFNAL 747
N++ +T+ P I A+GD R + A E+ +A + G+ A
Sbjct: 269 NEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVPR--DEAA 326
Query: 748 PF 749
P+
Sbjct: 327 PW 328
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 52/241 (21%), Positives = 88/241 (36%), Gaps = 34/241 (14%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLI-----LSNKGAL--EMINVPKKLCIIGAGVI 581
I +I ATG R V D + + L E+ K +IG G I
Sbjct: 104 SAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYI 163
Query: 582 GLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKIN 640
GLE ++ + G VT+LE L E +++ G+++ + I+ +
Sbjct: 164 GLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGD 223
Query: 641 KENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND 699
V T V+ + + I D +++ IG +P L G N + V++
Sbjct: 224 GTKV--------TGVRMQDGSVIPADIVIVGIGIVPCVGAL--ISAGASG--GNGVDVDE 271
Query: 700 NCETNIPNIYAIGDVVRGPMLAHK-----------AEEEGIMVAEHISGQKHSINFNALP 748
C T++ ++YAIGD A + A+ I G + A P
Sbjct: 272 FCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPVP--YKATP 329
Query: 749 F 749
+
Sbjct: 330 W 330
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-24
Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 46/246 (18%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLILSN-------------KGALEMINVPKKLCI 575
I ++++ATG++ R L + + + K + +
Sbjct: 95 TAIEYGHLVLATGARNRMLDVPNAS----LPDVLYLRTLDESEVLRQRMP---DKKHVVV 147
Query: 576 IGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKI 634
IGAG IGLE + R G EV ++E++ + V EI+ + G+ + +
Sbjct: 148 IGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRA 207
Query: 635 HDIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENN 693
+I + V T V ++ D +++ +G IPN GL
Sbjct: 208 TEIAAEGDRV--------TGVVLSDGNTLPCDLVVVGVGVIPNVEIA--AAAGLPT--AA 255
Query: 694 FIIVNDNCETNIPNIYAIGDVVRGPMLAHK----------AEEEGIMVAEHISGQKHSIN 743
IIV+ T+ P+I AIGD + A ++ VA ++G
Sbjct: 256 GIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDAKP-- 313
Query: 744 FNALPF 749
++ P+
Sbjct: 314 YDGYPW 319
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 3e-23
Identities = 59/238 (24%), Positives = 91/238 (38%), Gaps = 32/238 (13%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLI-----LSNKGAL-EMINVPKKLCIIGAGVIG 582
T++A I+IATGS+AR+ + + L + +L I+G G+IG
Sbjct: 96 TTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIG 155
Query: 583 LEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK 641
E+ + R+LG VTILE L + I LL + G+ + L T +
Sbjct: 156 CEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGE- 214
Query: 642 ENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDN 700
+ V S D LI +G P + GL + +IV+
Sbjct: 215 --------GQLEQVMASDGRSFVADSALICVGAEPADQLA--RQAGLAC--DRGVIVDHC 262
Query: 701 CETNIPNIYAIGDVVRGPMLAHK---------AEEEGIMVAEHISGQKHSINFNALPF 749
T ++A+GDV P+ A A+ + VA I G+ S LP
Sbjct: 263 GATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKNVS--APQLPV 318
|
| >1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219 | Back alignment and structure |
|---|
Score = 98.2 bits (244), Expect = 3e-23
Identities = 19/179 (10%), Positives = 47/179 (26%), Gaps = 6/179 (3%)
Query: 208 IDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAI 267
++L + K F F+ + + +P ++ ++ +
Sbjct: 35 QTVQLDITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTV 94
Query: 268 SSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNK-LLPEEMSGGTFTISNGGVFGSM 326
+ L + ++ + +N P+ F +S
Sbjct: 95 FHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFT 154
Query: 327 LSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF 385
+ + V + K + V+ P+ A+ H + DG L
Sbjct: 155 SFDLNVANMDNFFAPVFTMGK--YYTQGDKVLMPL---AIQVHHAVCDGFHVGRMLNEL 208
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 5e-23
Identities = 61/400 (15%), Positives = 124/400 (31%), Gaps = 87/400 (21%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVG---CIP--- 442
+ ++IG G + A+ + V +P
Sbjct: 10 SHVPFLLIGGGTAAFAAARSIRARDPG-----------------ARVLIVSEDPELPYMR 52
Query: 443 ---SKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKN 499
SK L + F ++ +++ ++ N G+ L
Sbjct: 53 PPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLT--- 109
Query: 500 KIKFFHGHAIFTGKIQNNFHEIQIINKT-----KETITAKYIIIATGSKARSFPGVKFDE 554
G + ++ + + IT + +IATG RS +
Sbjct: 110 ------GKKV---------VQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLSAIDRAG 154
Query: 555 NLILSNKGAL----------EMINVPKKLCIIGAGVIGLEI----GSIWRRLGSEVTILE 600
+ S ++ K + IIG G +G E+ G R LG+EV L
Sbjct: 155 AEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLF 214
Query: 601 MSS-NFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEI 659
N + E ++ + ++G+ ++ N + + ++ +LI + ++
Sbjct: 215 PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKD-----GRKV 269
Query: 660 ITSIFDKLLIAIGRIPNTNNLNIDKIGLKV-NENNFIIVNDNCETNIPNIYAIGDVVRGP 718
T D ++ A+G PN GL++ ++ VN + NI+ GD
Sbjct: 270 ET---DHIVAAVGLEPNVELA--KTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAACFY 323
Query: 719 MLAHK---------AEEEGIMVAEHISGQKHSINFNALPF 749
+ A G + E+++G +
Sbjct: 324 DIKLGRRRVEHHDHAVVSGRLAGENMTGAAKP--YWHQSM 361
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-23
Identities = 50/239 (20%), Positives = 92/239 (38%), Gaps = 36/239 (15%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLI-----LSNKGAL-EMINVPKKLCIIGAGVIG 582
T+ +++ATG+ R+ P ++ + L + + + +L I+G GVIG
Sbjct: 98 RTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIG 157
Query: 583 LEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK 641
LE+ + R G V+++E ++ +A QG+++ +
Sbjct: 158 LELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGS---- 213
Query: 642 ENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDN 700
V + T I D +++ IG + N GL ++ I V+
Sbjct: 214 ---------VDGVVLLDDGTRIAADMVVVGIGVLANDALA--RAAGLAC--DDGIFVDAY 260
Query: 701 CETNIPNIYAIGDVVRGPMLAHK----------AEEEGIMVAEHISGQKHSINFNALPF 749
T P++YA+GDV R A+ +GI VA H+ + LP+
Sbjct: 261 GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAP-GYAELPW 318
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 4e-22
Identities = 58/242 (23%), Positives = 108/242 (44%), Gaps = 45/242 (18%)
Query: 519 HEIQIINKTKETITAK-------YIIIATGSKAR--SFPGVK--F------DENLILSNK 561
E ++I++ ++ + + +++ATG++AR G + D + I
Sbjct: 81 EEAKLIDRGRKVVITEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIK--- 137
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
E I + IIG G IGLE+ G V ++ + FL +DEE++ +L
Sbjct: 138 ---ESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDML 193
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
+ G+ LN+++ ++ N+E VL N I + AIG +PN +
Sbjct: 194 EETGVKFFLNSEL--LEANEEGVLTN--------SGFIEG---KVKICAIGIVPNVDLAR 240
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV--RGPM--LAHKAEEEGIMVAEHISG 737
+ G+ I+++DN T+ ++YAIGD G + A A E+ ++A+ + G
Sbjct: 241 --RSGIHTGRG--ILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG 296
Query: 738 QK 739
+
Sbjct: 297 EP 298
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 97.8 bits (244), Expect = 2e-21
Identities = 75/363 (20%), Positives = 139/363 (38%), Gaps = 81/363 (22%)
Query: 373 IDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALG 432
+D + + +DV+++G+GP G A++ A+ G +T + E G
Sbjct: 195 VDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--------RFG 246
Query: 433 GTCTNVGCI---PSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNN 489
G + I S + +K +Y ++ + + + ++
Sbjct: 247 GQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVID--------SQSASKLVPAAT 298
Query: 490 SGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549
G L QI + + A+ IIIATG+K R+
Sbjct: 299 EGGLH---------------------------QIETASGAVLKARSIIIATGAKWRNM-N 330
Query: 550 VKFDENLILSNKGALEMINV------------PKKLCIIGAGVIGLEIGSIWRRLGSEVT 597
V ++ KG V K++ +IG G G+E + VT
Sbjct: 331 VPGEDQY--RTKG------VTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVT 382
Query: 598 ILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVK 656
+LE + D+ + K L N ++IILN + ++K + V+ + Y ++ +
Sbjct: 383 LLEFAPEM--KADQVLQDKVRSLKN---VDIILNAQTTEVKGDGSKVVGLEYRDRVSGDI 437
Query: 657 TEI-ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715
+ + IF + IG +PNT+ L + L+ N II++ CET++ ++A GD
Sbjct: 438 HSVALAGIF----VQIGLLPNTHWL---EGALERNRMGEIIIDAKCETSVKGVFAAGDCT 490
Query: 716 RGP 718
P
Sbjct: 491 TVP 493
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 4e-21
Identities = 26/77 (33%), Positives = 50/77 (64%)
Query: 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62
+ E K+P + E ++E ++ W KEG++V ++++L+++ TDKV +++P+P G I KI+
Sbjct: 1 MYEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILY 60
Query: 63 TDGSIVTSNQVIALIDT 79
+G +V + IDT
Sbjct: 61 REGQVVPVGSTLLQIDT 77
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 94.6 bits (236), Expect = 7e-21
Identities = 48/219 (21%), Positives = 79/219 (36%), Gaps = 48/219 (21%)
Query: 537 IIATGSKAR--SFPGVK--F------DENLILSNKGALEMINVPKKLCIIGAGVIGLEIG 586
IIA+GS A P F D I + K IIG G++G+E+
Sbjct: 109 IIASGSIANKIKVPHADEIFSLYSYDDALKIK------DECKNKGKAFIIGGGILGIELA 162
Query: 587 SIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL 645
G+ +I + L +D + L++ G+ I N+
Sbjct: 163 QAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNF----------- 211
Query: 646 INYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704
E+ I ++ A+G PN + + + I+VND+ ET+
Sbjct: 212 -----------EEMGDLIRSSCVITAVGVKPNLDFIK--DTEIASK--RGILVNDHMETS 256
Query: 705 IPNIYAIGDVV--RGPMLAH--KAEEEGIMVAEHISGQK 739
I +IYA GDV G A ++G + + G+
Sbjct: 257 IKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGED 295
|
| >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-19
Identities = 19/80 (23%), Positives = 44/80 (55%)
Query: 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI 60
+++ K+ + E I E T+ W+ KEG+ V + +++ ++++DK + + + DG+I K+
Sbjct: 2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
Query: 61 IITDGSIVTSNQVIALIDTD 80
I + + I+T+
Sbjct: 62 YYNLDDIAYVGKPLVDIETE 81
|
| >3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 6e-19
Identities = 15/163 (9%), Positives = 43/163 (26%), Gaps = 7/163 (4%)
Query: 218 FEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPI 277
+ + F + + A+ Q+ + ++ + +I D +
Sbjct: 40 KKSLDDSAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQETETFSA 99
Query: 278 LRNADTMSIADIEKKINEFINKAQDNKLL--PEEMSGGTFTISNGGVFGSMLSTPIINPP 335
L + I + + + + L IS +
Sbjct: 100 LSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANF 159
Query: 336 QSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
+ + K + + ++ P+ ++ H + DG
Sbjct: 160 TDYFAPIITMAK--YQQEGDRLLLPL---SVQVHHAVCDGFHV 197
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 6e-19
Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 23/223 (10%)
Query: 537 IIATGSKAR--SFPGVKFDENLILSN----KGALEMINVPKKLCIIGAGVIGLEIGSIWR 590
++A G++ G D +++ + +++ ++GAG+IG E +
Sbjct: 106 VLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLS 165
Query: 591 RLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYS 649
G ++ ++ + + AK L G+ L + +K E + + S
Sbjct: 166 SGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLS 225
Query: 650 NKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIY 709
+ I D ++ A+G P T L GL VN I+V+ + T+ NIY
Sbjct: 226 DG-----EVIPC---DLVVSAVGLRPRTE-L-AFAAGLAVNRG--IVVDRSLRTSHANIY 273
Query: 710 AIGDV--VRGPMLAHKA--EEEGIMVAEHISGQKHSINFNALP 748
A+GD V G L + +A+ ++G + + +P
Sbjct: 274 ALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVAYGPMP 316
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 7e-18
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 19/199 (9%)
Query: 197 TTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINAS---VDGN 253
T+ I + +ID R+ + ++ K+ F A+V A+K++P +N VDG
Sbjct: 12 TSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGK 71
Query: 254 -NIIYHKYYDIGIAI-----SSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLP 307
I + ++G+AI +R LVV ++ +TM + + +A+D KL
Sbjct: 72 PTAITPAHTNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTA 131
Query: 308 EEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALS 367
E+ SG T +++N G G++ S P + Q AI+G A++ E I +
Sbjct: 132 EDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGAGAMEYP--AEFQGASEERIADLGIG 189
Query: 368 --------YDHRIIDGREA 378
YDHRII G E+
Sbjct: 190 KLITLTSTYDHRIIQGAES 208
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 3e-17
Identities = 51/215 (23%), Positives = 89/215 (41%), Gaps = 39/215 (18%)
Query: 520 EIQIINKTKETITAKYIIIATGSKARS--FPGVKFDENLILSNKGALEMINVP------- 570
I +T AKY+II TG+ + G E+ KG
Sbjct: 102 GGFDIETNDDTYHAKYVIITTGTTHKHLGVKG----ES-EYFGKG------TSYCSTCDG 150
Query: 571 -----KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
K++ IG G G VTI+E + + ++ + K+
Sbjct: 151 YLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY--MCENAYVQE----IKKRN 204
Query: 626 LNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITS-IFDKLLIAIGRIPNTNNLNID 683
+ I+N ++ +I + + V + Y +++T + I T +F I +G IP T+ L
Sbjct: 205 IPYIMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVF----IYVGLIPQTSFLK-- 258
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGP 718
G+K++E +I+V+ T++P +YA GDV G
Sbjct: 259 DSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGN 293
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 1e-16
Identities = 61/355 (17%), Positives = 112/355 (31%), Gaps = 91/355 (25%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT--------- 436
+ + DV+++GAGP G A + G +D + GG T
Sbjct: 1 MAADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPE------PGGQLTALYPEKYIY 54
Query: 437 NVGCIPS-------KALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNN 489
+V P K L++ F +L ER + ++ +
Sbjct: 55 DVAGFPKVYAKDLVKGLVEQVAPFN-------------PVYSLG-----ERAETLEREGD 96
Query: 490 SGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF-- 547
F ++ TAK +IIA G +F
Sbjct: 97 L---FKVTTSQ---------------------------GNAYTAKAVIIAAG--VGAFEP 124
Query: 548 --PGVKFDENLILSNKGALEMINVP-----KKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
G + +G + K++ I+G G ++ +T++
Sbjct: 125 RRIGAPGEREF--EGRGVYYAVKSKAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIH 182
Query: 601 MSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEII 660
F E K+ + L ++ ++ ++ ++ + T + +
Sbjct: 183 RRPQF--RAHEASVKELMKAHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQEELALE 240
Query: 661 TSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715
D +LI G I + GL + E N I V+ T+IP +YA GD+V
Sbjct: 241 V---DAVLILAGYITKLGP--LANWGLAL-EKNKIKVDTTMATSIPGVYACGDIV 289
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 1e-16
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 35/209 (16%)
Query: 521 IQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVP---------- 570
QI + + A+ II+ATG+K R+ V ++ KG V
Sbjct: 92 HQIETASGAVLKARSIIVATGAKWRNM-NVPGEDQY--RTKG------VTYCPHCDGPLF 142
Query: 571 --KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628
K++ +IG G G+E + VT+LE + D+ + K L N ++I
Sbjct: 143 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM--KADQVLQDKLRSLKN---VDI 197
Query: 629 ILNTKIHDIKINKENVL-INYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKIG 686
ILN + ++K + V+ + Y ++ + I + IF + IG +PNTN L +
Sbjct: 198 ILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIF----VQIGLLPNTNWL---EGA 250
Query: 687 LKVNENNFIIVNDNCETNIPNIYAIGDVV 715
++ N II++ CETN+ ++A GD
Sbjct: 251 VERNRMGEIIIDAKCETNVKGVFAAGDCT 279
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 38/220 (17%), Positives = 65/220 (29%), Gaps = 42/220 (19%)
Query: 529 ETITAKYIIIATGSKARSFPGVK-FDENLILSNKGAL--------EMINVPKKLCIIGAG 579
TA +I+A G P + E E+ K+ +I A
Sbjct: 97 RRETAGRLILAMGVTDE-LPEIAGLRE---RWGSAVFHCPYCHGYELDQ--GKIGVIAAS 150
Query: 580 VIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639
+ + + G N + D + L +G+ + T+I +I
Sbjct: 151 PMAIHHALMLPDWGETTFFT----NGIVEPDADQHAL----LAARGVRVE-TTRIREIAG 201
Query: 640 NKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENN---FI 695
+ +V SI L + + +K+G V E I
Sbjct: 202 HA------------DVVLADGRSIALAGLFTQPKLRITVDWI--EKLGCAVEEGPMGSTI 247
Query: 696 IVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+ + +T I+A GDV R A +G M
Sbjct: 248 VTDPMKQTTARGIFACGDVARPAGSVALAVGDGAMAGAAA 287
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 32/211 (15%), Positives = 70/211 (33%), Gaps = 36/211 (17%)
Query: 520 EIQIINKTKETITAKYIIIATGSKARSFPGVK-FDENLILSNKGAL--------EMINVP 570
+I+ K A+ +++ATG + FP + E K E+ +
Sbjct: 93 LFEIVTKDHTKYLAERVLLATGMQEE-FPSIPNVRE---YYGKSLFSCPYCDGWELKD-- 146
Query: 571 KKLCIIGAGVIG-LEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
+ L II L + + +++ I T E+++ L+ + + +I
Sbjct: 147 QPLIIISENEDHTLHMTKLVYNWSTDLVIA--------TNGNELSQTIMDELSNKNIPVI 198
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLK 688
I ++ + V+ I I + +++G +
Sbjct: 199 -TESIRTLQGEGGYL--------KKVEFHSGLRIERAGGFIVPTFFRPNQFI--EQLGCE 247
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPM 719
+ N +++D T+ NIY G+
Sbjct: 248 LQSNGTFVIDDFGRTSEKNIYLAGETTTQGP 278
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
K D VIGAGP G AS+ L + + A D
Sbjct: 5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDN 37
|
| >1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 8e-16
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
++V +P LS +++ T+ W KK GE + + L +IETDK + ++G + KI++
Sbjct: 28 MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVP 87
Query: 64 DGSI-VTSNQVIALI---DTDISKLSSKT 88
+G+ V + +I + DIS +
Sbjct: 88 EGTRDVPLGTPLCIIVEKEADISAFADYR 116
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 9e-16
Identities = 57/356 (16%), Positives = 113/356 (31%), Gaps = 93/356 (26%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT---------N 437
+ D+ +IG GP G A+ + I+ LGG +
Sbjct: 11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQ------LGGQLAALYPEKHIYD 64
Query: 438 VGCIPS-------KALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNS 490
V P ++L + + +V LN E K ++
Sbjct: 65 VAGFPEVPAIDLVESLWAQAERYN-------------PDVVLN-----ETVTKYTKLDDG 106
Query: 491 GILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA---RSF 547
F + N ++ ++IA G A R
Sbjct: 107 --TFETRTNT---------------------------GNVYRSRAVLIAAGLGAFEPRKL 137
Query: 548 PGVKFDENLILSNKGALEMINVP-----KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602
P + ++L + K++ I+G G L+ + + VT++
Sbjct: 138 PQLGNIDHLT--GSSVYYAVKSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRG 195
Query: 603 SNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK---ENVLINYSNKSTNVKTEI 659
F + A + +++ L T++ I+ + V + +
Sbjct: 196 HEF--QGHGKTAHEVERARANGTIDVYLETEVASIEESNGVLTRVHLR------SSDGSK 247
Query: 660 ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715
T D+LLI IG N + + L++ N ++V+ + +T++ +YA GD+
Sbjct: 248 WTVEADRLLILIGFKSNLG--PLARWDLEL-YENALVVDSHMKTSVDGLYAAGDIA 300
|
| >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 3e-15
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
I++ +P LS ++ E ++ W KKEGE V + L +IETDK ++ L A DGI+ KI++
Sbjct: 8 IKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVE 67
Query: 64 DGSI-VTSNQVIALI---DTDISKLSSKT 88
+GS + +I LI D +S +
Sbjct: 68 EGSKNIRLGSLIGLIVEEGEDWKHVSGPS 96
|
| >2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217 | Back alignment and structure |
|---|
Score = 73.6 bits (180), Expect = 7e-15
Identities = 22/170 (12%), Positives = 45/170 (26%), Gaps = 15/170 (8%)
Query: 217 KFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNN-IIYHKYYDIGIAISSSRGLVV 275
+ K F ++ AV+ A + P +D + ++ + D+ I
Sbjct: 43 QRAKAAGQS--FFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKIKENGKF 100
Query: 276 PILRNADTMSIADIEKKINEFINKAQD-------NKLLPEEMSGGTFTISNGGVFGSMLS 328
R ++ I+ + + G +S
Sbjct: 101 FTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSI 160
Query: 329 TPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREA 378
T + K + ++ PI A++ H IDG
Sbjct: 161 TGTQEKRSGNNYPLLNAGK--AIIREGRLVMPI---AMTIHHGFIDGHHL 205
|
| >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 8e-15
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
+V +P LS ++ T+ W KKEG+ + + + ++ETDK + + ++ + KI++
Sbjct: 8 QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVA 67
Query: 64 DGSI-VTSNQVIALI---DTDISKLSSKTE 89
+G+ V +I + DI + T
Sbjct: 68 EGTRDVPIGAIICITVGKPEDIEAFKNYTL 97
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 9e-15
Identities = 58/359 (16%), Positives = 113/359 (31%), Gaps = 107/359 (29%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT---------NV 438
K +D+ +IG GP G + I E LGG + +V
Sbjct: 5 TKVYDITIIGGGPVGLFTAFYGGMRQASVKII------ESLPQLGGQLSALYPEKYIYDV 58
Query: 439 GCIPS-------KALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSG 491
P L + F+ Q + L + ++ K+ +
Sbjct: 59 AGFPKIRAQELINNLKEQMAKFD-------------QTICLE-----QAVESVEKQADGV 100
Query: 492 ILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF---- 547
+ +ET +K +II G +F
Sbjct: 101 F------------------------------KLVTNEETHYSKTVIITAG--NGAFKPRK 128
Query: 548 PGVKFDENLILSNKGALEMINVP-----KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602
++ E K ++ +++ I+G G ++ + + EV+I+
Sbjct: 129 LELENAEQY--EGKNLHYFVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRR 186
Query: 603 SNF---LNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK--ENVLINYSNKSTNVKT 657
F ++V+ L+ +N++ ++ E +++ VK
Sbjct: 187 DKFRAHEHSVEN---------LHASKVNVLTPFVPAELIGEDKIEQLVL------EEVKG 231
Query: 658 EIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715
+ + D L++ G + + I GL + E N I+V ETNI +A GD+
Sbjct: 232 DRKEILEIDDLIVNYGFVSSLGP--IKNWGLDI-EKNSIVVKSTMETNIEGFFAAGDIC 287
|
| >3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 3e-13
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
++V +P LS +++ T+ W KK GE + + L +IETD + ++G + KI++
Sbjct: 6 MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVP 65
Query: 64 DGSI-VTSNQVIALIDTD 80
+G+ V + +I
Sbjct: 66 EGTRDVPLGTPLCIIVEK 83
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 2e-12
Identities = 43/208 (20%), Positives = 82/208 (39%), Gaps = 37/208 (17%)
Query: 523 IINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------P 570
+ K K A +I+ G K R GV ++ + +G +
Sbjct: 104 VKTKRKGEFKADSVILGIGVKRRKL-GVPGEQEF--AGRG------ISYCSVADAPLFKN 154
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIIL 630
+ + +IG G LE I ++V ++ F + K + +L
Sbjct: 155 RVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF--KAQPIYVETVK---KKPNVEFVL 209
Query: 631 NTKIHDIKINK--ENVLINYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
N+ + +IK +K + V++ N T E+ + +F I IG P T+ G+
Sbjct: 210 NSVVKEIKGDKVVKQVVVE--NLKTGEIKELNVNGVF----IEIGFDPPTDFAK--SNGI 261
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVV 715
+ + N +I V++ T++P ++A GD
Sbjct: 262 ETDTNGYIKVDEWMRTSVPGVFAAGDCT 289
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 70/434 (16%), Positives = 123/434 (28%), Gaps = 107/434 (24%)
Query: 375 GREAVLSLMSFIMNKNFD---VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL 431
G E + + V+++GAGP G A+ L + G+ D + +
Sbjct: 371 GEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTD--TAEK----I 424
Query: 432 GGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSG 491
GG V +P + +Y + + + + K N
Sbjct: 425 GGHLNQVAALPGLGEW----------SYHRDY----------RETQITK----LLKKNKE 460
Query: 492 ILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINK--TKETITA-KY--IIIATGSKARS 546
++ + K T + + +IIATG++ +
Sbjct: 461 S---------------------------QLALGQKPMTADDVLQYGADKVIIATGARWNT 493
Query: 547 FPGVKFDENLILSNKGALEMI-----------NVPKKLCIIGAG--VIGLEIGSIWRRLG 593
+ I +L + K++ I+ A + + G
Sbjct: 494 DGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAG 553
Query: 594 SEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKST 653
EVTI+ L++ + + + I+ + + + + S
Sbjct: 554 HEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSK 613
Query: 654 NVKTEIITSI-----------FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE 702
S FD L++ GR N LK E+ + E
Sbjct: 614 RTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN----ELKARESEW------AE 663
Query: 703 TNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGK 762
+I IY IGD P L A G VA I A+P+ E + G
Sbjct: 664 NDIKGIYLIGDAEA-PRLIADATFTGHRVAREIEEANPQ---IAIPYK----RETIAWGT 715
Query: 763 TEQYLKKHNISYNV 776
I Y V
Sbjct: 716 PHMPGGNFKIEYKV 729
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 43/208 (20%), Positives = 79/208 (37%), Gaps = 44/208 (21%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------PKKLCII 576
+T AK +IIATG + G+K + KG V K++ ++
Sbjct: 99 KTFEAKSVIIATGGSPKRT-GIKGESEY--WGKG------VSTCATCDGFFYKNKEVAVL 149
Query: 577 GAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV---DEEIAKKAF--HLLNKQGLNIILN 631
G G +E + +V + + D H N + +
Sbjct: 150 GGGDTAVEEAIYLANICKKVYL----------IHRRDGFRCAPITLEHAKNNDKIEFLTP 199
Query: 632 TKIHDIKINKENVL-INYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLN--IDKIGL 687
+ +IK + V ++ N +TN K E+ + F I +G N L + +
Sbjct: 200 YVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFF----IFVGYDVNNAVLKQEDNSMLC 255
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVV 715
K +E I+V+ + +TN+ ++A GD+
Sbjct: 256 KCDEYGSIVVDFSMKTNVQGLFAAGDIR 283
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 3e-10
Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 43/213 (20%)
Query: 523 IINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------P 570
I + +T AK +I+ TGS + G K ++ KG V
Sbjct: 97 IKLEGGKTELAKAVIVCTGSAPKKA-GFKGEDEF--FGKG------VSTCATCDGFFYKN 147
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV---DEEIAKKAF--HLLNKQG 625
K++ ++G G LE + S++ + + DE A + + +
Sbjct: 148 KEVAVLGGGDTALEEALYLANICSKIYL----------IHRRDEFRAAPSTVEKVKKNEK 197
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLN--I 682
+ +I + + ++ +K V ++ + IF +G L
Sbjct: 198 IELITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIF----TFVGLNVRNEILKQDD 253
Query: 683 DKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715
K + E + V+ +T++ ++A GD+
Sbjct: 254 SKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLR 286
|
| >2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 2e-09
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 102 IVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVL 140
+ MP+A++++ + + +++ GTG GRI+KEDV++ L
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQ-GTGLGGRILKEDVMRHL 38
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 46/207 (22%)
Query: 528 KETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------PKKLCI 575
AK +I+ATG+ R G+ ++N KG V KK+ +
Sbjct: 107 NGEYRAKAVILATGADPRKL-GIPGEDNF--WGKG------VSTCATCDGFFYKGKKVVV 157
Query: 576 IGAGVIGLEIGSIWRRLGSEVTIL----EMSSNFLNTVDEEI-AKKAFHLLNKQGLNIIL 630
IG G +E G + EVT++ + + ++ +AF + I
Sbjct: 158 IGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA-------NKVAQARAF---ANPKMKFIW 207
Query: 631 NTKIHDIKINKENVL-INYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688
+T + +I ++V + N T +E+ +F I IG +PNT K +
Sbjct: 208 DTAVEEI-QGADSVSGVKLRNLKTGEVSELATDGVF----IFIGHVPNTA---FVKDTVS 259
Query: 689 VNENNFIIVNDNCETNIPNIYAIGDVV 715
+ ++ ++ V D TNIP ++A GDV
Sbjct: 260 LRDDGYVDVRDEIYTNIPMLFAAGDVS 286
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-09
Identities = 14/62 (22%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 19 TLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78
L + ++G V + ++E K+I+ L + G + K I G+++ + V+A ++
Sbjct: 15 KLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEAGCVVARLE 73
Query: 79 TD 80
D
Sbjct: 74 LD 75
|
| >3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-09
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 95 DIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSSIKNINEEKQE 152
+IK T+ P+ + + +NN+++S++ G+GKDGRI+KED+L L +
Sbjct: 2 EIKGRKTLATPAVRNLAMENNIKLSEVV-GSGKDGRILKEDILNYLEKQTLEHHHHHH 58
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 41/285 (14%), Positives = 80/285 (28%), Gaps = 57/285 (20%)
Query: 495 LFKKNKIKFFHGHAIFTGKI--QNNFHEIQIINKTKETITAKYIIIATGSKARSF--PGV 550
++ I F A +I + I T+ Y++IATG K PG
Sbjct: 68 YVERKGIHFIAQSAE---QIDAEAQ----NITLADGNTVHYDYLMIATGPKLAFENVPGS 120
Query: 551 KFDENLILSNKGAL----------EMINVPKKLCIIGAGVIG---------LEIGSIWRR 591
E + S ++ P + I + + S ++
Sbjct: 121 DPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKK 180
Query: 592 LG-----SEVTILEMSSNFLNTVDEEIAKKAFHL---LNKQGLNIILNTKIHDIKINKEN 643
G T + + + + L L ++G+ N K+ ++ NK
Sbjct: 181 RGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVTKVEDNKMY 240
Query: 644 VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE- 702
V T + + + I + + N F++V+++
Sbjct: 241 VTQVDEKGETIKEMVLP---VK-FGMMIP--AFKGVPAVAGVEGLCNPGGFVLVDEHQRS 294
Query: 703 TNIPNIYAIGDVV------------RGPMLAHKAEEEGIMVAEHI 735
NI+A G + P + E +I
Sbjct: 295 KKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNI 339
|
| >1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-09
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 100 NTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142
N + P+ +++L+++NL+ S I GTG GR+ +EDV K L+
Sbjct: 9 NDALSPAIRRLLAEHNLDASAIK-GTGVGGRLTREDVEKHLAK 50
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 52.1 bits (125), Expect = 2e-08
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 14 SISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQV 73
S S L + ++G V + ++E K+I+ L + G + K I G+++ + V
Sbjct: 22 SPSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAVLEAGCV 80
Query: 74 IALIDTD 80
+A ++ D
Sbjct: 81 VARLELD 87
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 3e-08
Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 42/187 (22%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALG--------GTC--T 436
M++ + I+IGAG G + +LA+LG + +G G C T
Sbjct: 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVF------DNGKKIGRKILMSGGGFCNFT 54
Query: 437 NVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF-- 494
N+ P+ L Q H F VK++ Y T ++L + + + G LF
Sbjct: 55 NLEVTPAHYLSQNPH-F--VKSALARY---TNWDFISL---VAEQGITYHEKELGQLFCD 105
Query: 495 ------------LFKKNKIKFFHGHAIFT-GKIQNNFHEIQIINKTKETITAKYIIIATG 541
K K + +IQN+ ++ K +I+ATG
Sbjct: 106 EGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATG 165
Query: 542 SKARSFP 548
S P
Sbjct: 166 GL--SMP 170
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 664 FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVN-DNCETNIPNIYAIGDVVRGPMLAH 722
D ++ A G + + +K N + V+ + +T+ P ++A GD+V
Sbjct: 431 ADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTV 490
Query: 723 KAEEEGIMVAEHI 735
++ +G + +I
Sbjct: 491 ESVNDGKQASWYI 503
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 5e-08
Identities = 58/395 (14%), Positives = 115/395 (29%), Gaps = 105/395 (26%)
Query: 375 GREAVLSLMSFIMNKNFD---VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL 431
G E + V+V+GAGP G A+ L G+ + + L
Sbjct: 373 GEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAARALGVRGYDVVLAE--AGRD----L 426
Query: 432 GGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSG 491
GG T +P + V + +L N+
Sbjct: 427 GGRVTQESALPGLSAWG--------------------RVKEYREAVLAELPNV------- 459
Query: 492 ILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAK---YIIIATGSKARSFP 548
+I + T + I ++I ATG+ R+
Sbjct: 460 --------EIYR--ESPM-----------------TGDDIVEFGFEHVITATGATWRTDG 492
Query: 549 GVKFDENLILSNKG-----ALEMIN----VPKKLCIIGAG--VIGLEIGSIWRRLGSEVT 597
+F + +G ++ KK+ + +G + + + G EV+
Sbjct: 493 VARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVS 552
Query: 598 ILEMSSNFLNTVDEEIAKKAFHL---LNKQGLNIILNTKIHDIKINKENVLINYSNKSTN 654
I+ + + + + L + G+ + + + + V + + +
Sbjct: 553 IVTPGAQVSS--WTNNTFEVNRIQRRLIENGVARVTDHAVV--AVGAGGVTV--RDTYAS 606
Query: 655 VKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDV 714
++ E+ D +++ R+P E +V I ++ IGD
Sbjct: 607 IEREL---ECDAVVMVTARLPR-------------EELYLDLVARRDAGEIASVRGIGDA 650
Query: 715 VRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPF 749
P A G AE S + +PF
Sbjct: 651 WA-PGTIAAAVWSGRRAAEEFDAVLPSN--DEVPF 682
|
| >2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 6e-08
Identities = 19/50 (38%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 93 KKDIKNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142
++IK T+ P+ +++ +NN+++S++ G+GKDGRI+KED+L L
Sbjct: 8 HQEIKGRKTLATPAVRRLAMENNIKLSEVV-GSGKDGRILKEDILNYLEK 56
|
| >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-08
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62
+ EV +P + E K G+ V ++LI +E DK +E+PAP G++ ++ +
Sbjct: 2 VKEVNVPDIVEVTE------VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 55
Query: 63 TDGSIVTSNQVIALIDTDISKLSSKTEIK 91
G V + +I + + + + ++ +
Sbjct: 56 NVGDKVKTGSLIMIFEVEGAAPAAAPAKQ 84
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 387 MNKN-FDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M + DV+VIGAGP G VA+ + + GFK ++
Sbjct: 1 MQREKVDVLVIGAGPAGTVAASLVNKSGFKVKIVE 35
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 63/407 (15%), Positives = 116/407 (28%), Gaps = 141/407 (34%)
Query: 375 GREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
E + ++ + KN + V+GAGP G +I A G + D +E +GG
Sbjct: 360 CHETKMPILPAVQKKN--LAVVGAGPAGLAFAINAAARGHQVTLFD--AHSE----IGGQ 411
Query: 435 CTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF 494
IP K Y ++M+E +K N
Sbjct: 412 FNIAKQIPGKEEFY----------ETLRY----------YRRMIEVTGVTLKLN------ 445
Query: 495 LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITA-KYIIIATGSKAR--SFPGVK 551
H + T + + A I+A+G R G+
Sbjct: 446 ------------------------HTV-----TADQLQAFDETILASGIVPRTPPIDGI- 475
Query: 552 FDENLILSNKGALEMIN----VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607
D +LS L+++ V K+ IIG G IG + + G +
Sbjct: 476 -DHPKVLS---YLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEW 531
Query: 608 TVDEEIAKKAF--------------------------------------HLLNKQGLNII 629
+D + + L +G+ +I
Sbjct: 532 GIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMI 591
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689
KI+ + + + + ++ + D ++I G+ PN
Sbjct: 592 PGVSY--QKIDDDGLHVVINGETQVLA-------VDNVVICAGQEPNRA----------- 631
Query: 690 NENNFIIVNDNCETNIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHI 735
+ + ++ IG + A +A +G +A I
Sbjct: 632 -------LAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 1e-06
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 387 MN---KNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M+ + FD+IVIG GPGG + +A G + ++
Sbjct: 1 MSTRPEVFDLIVIGGGPGGSTLASFVAMRGHRVLLLE 37
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 48/286 (16%), Positives = 91/286 (31%), Gaps = 64/286 (22%)
Query: 495 LFKKNKIKFFHGHAIFTGKI--QNNFHEIQIINKTKETITAKYIIIATGSKARSF--PGV 550
+ I+F G KI +++ + + Y+I+ G+ + G
Sbjct: 65 ALPEKGIQFQEGTVE---KIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGW 121
Query: 551 ---------------------KFDENLILSNKGALEMINVPKKL------------CIIG 577
F I G + PK C
Sbjct: 122 DKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGP 181
Query: 578 AGVIGLEIGSIWRRLG----SEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTK 633
+ L + +++ G VT+ +L+ + K + N+ G+ ++ N K
Sbjct: 182 VFEMSLMLHGYFKKKGMLDKVHVTVFS-PGEYLSDLSPNSRKAVASIYNQLGIKLVHNFK 240
Query: 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV-NEN 692
I +I + + + K I D + I + P T N + + ++
Sbjct: 241 I--KEIREHEI--------VDEKGNTIP--AD-ITILLP--PYTGNPALKNSTPDLVDDG 285
Query: 693 NFIIVNDNCE-TNIPNIYAIGDVVR--GPMLAHKAEEEGIMVAEHI 735
FI + N N+YA+GD P L + A G + A+H+
Sbjct: 286 GFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHL 331
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-06
Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 48/210 (22%)
Query: 366 LSYDHRIIDGREAVLSLMSF--IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423
+ + H G + + F ++ + DV++IGAG G + +I + G + I
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMVAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVI---- 56
Query: 424 DNEENFALG--------GTC--TNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLN 473
+ A G G C TN+ P L H F K++ Y +
Sbjct: 57 --DHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPH-F--CKSALARY---RPQDFVA 108
Query: 474 LQKMLERKNNIIKKNNSGILF--------------LFKKNKIKFFHGHAIFT-GKIQNNF 518
L +ER + G LF K+ ++ +I + + F
Sbjct: 109 L---VERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGF 165
Query: 519 HEIQIINKTKETITAKYIIIATGSKARSFP 548
+ + T+ A +++A+G K S P
Sbjct: 166 ----RVTTSAGTVDAASLVVASGGK--SIP 189
|
| >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 17/79 (21%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
AL+E+K+P + ++ G+ + ++ LI +ETDK +++PA G++ ++
Sbjct: 1 ALVELKVPDIGGH-ENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVK 59
Query: 62 ITDGSIVTSNQVIALIDTD 80
+ G ++ +I +++ +
Sbjct: 60 VKVGDKISEGGLIVVVEAE 78
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 42/202 (20%), Positives = 82/202 (40%), Gaps = 28/202 (13%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLILSNK-----------GALEMINVPKKLCIIG 577
+ I A +I+A G+ A+ ++ GA + K L +IG
Sbjct: 109 KAILADAVILAIGAVAKRL-SFVGSGEVLGGFWNRGISACAVCDGAAPIFR-NKPLAVIG 166
Query: 578 AGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF--HLLNKQGLNIILNTKIH 635
G +E + + GS+V I+ D A K L+ +++I N+ +
Sbjct: 167 GGDSAMEEANFLTKYGSKVYIIHRR-------DAFRASKIMQQRALSNPKIDVIWNSSVV 219
Query: 636 DIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIAIGRIPNTNNLNIDKIGLKVNENNF 694
+ + E ++ K NV T ++ + L AIG P T G++++ + +
Sbjct: 220 EAYGDGERDVLG-GLKVKNVVTGDVSDLKVSGLFFAIGHEPATK---FLDGGVELDSDGY 275
Query: 695 IIVN-DNCETNIPNIYAIGDVV 715
++ +T++P ++A GDV
Sbjct: 276 VVTKPGTTQTSVPGVFAAGDVQ 297
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 387 MNK-NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445
M + +DV++IG G G A+ +L++ G K +D N C +
Sbjct: 2 MKELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDS---KPWNRIGDKPCG--DAVSKAH 56
Query: 446 L 446
Sbjct: 57 F 57
|
| >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 2e-06
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62
+ EV +P + E + K G+ V ++LI +E DK +E+PAP G++ ++ +
Sbjct: 2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59
Query: 63 TDGSIVTSNQVIALIDTD 80
G V + +I + + +
Sbjct: 60 NVGDKVKTGSLIMIFEVE 77
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 48/202 (23%), Positives = 77/202 (38%), Gaps = 34/202 (16%)
Query: 529 ETITAKYIIIATGSKAR--SFPGVKFDENLILSNKG--------ALEMINVPKKLCIIGA 578
E +T II+ATG+ A+ PG E KG I K L +IG
Sbjct: 127 EPVTTDAIILATGASAKRMHLPG----EE-TYWQKGISACAVCDGAVPIFRNKPLAVIGG 181
Query: 579 GVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF--HLLNKQGLNIILNTKIHD 636
G E + GS+V +L D A + + I+ NT +
Sbjct: 182 GDSACEEAQFLTKYGSKVFMLVRK-------DHLRASTIMQKRAEKNEKIEILYNTVALE 234
Query: 637 IKINKENVL-INYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNF 694
K + + + + N N +T++ ++ +F AIG P T I + +E +
Sbjct: 235 AKGDGKLLNALRIKNTKKNEETDLPVSGLF----YAIGHTPATK---IVAGQVDTDEAGY 287
Query: 695 IIVN-DNCETNIPNIYAIGDVV 715
I + T++P +A GDV
Sbjct: 288 IKTVPGSSLTSVPGFFAAGDVQ 309
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 30/232 (12%), Positives = 78/232 (33%), Gaps = 38/232 (16%)
Query: 527 TKETITAKYIIIATGSKAR----SFPGV---KFDENLILSNKGALEMINVPKKLCIIGAG 579
T ET A YI +ATG G+ + ++ + + +IG
Sbjct: 126 TTETYHADYIFVATGDYNFPKKPFKYGIHYSEIEDFDNFNKG----------QYVVIGGN 175
Query: 580 VIGLEIGSIWRRLGSEVTILEMSSNFLN-------TVDEEIAKKAFHLLNK-QGLNIILN 631
G + + GS++ + ++ + + ++ +++ + + + ++
Sbjct: 176 ESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVH 235
Query: 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE 691
+ DI N I++ + + + + + +L I +
Sbjct: 236 YTVKDIDFNNGQYHISFDSG------QSVHTPHEPILATGFDATKNP---IVQQLFVTTN 286
Query: 692 NNFIIVNDNCETNIPNIYAIGDVVRGPMLA----HKAEEEGIMVAEHISGQK 739
+ + + T PNI+ IG V +K ++A ++ ++
Sbjct: 287 QDIKLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQRE 338
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
++ V +IGAG G +I L G I E
Sbjct: 3 QHHKVAIIGAGAAGIGMAITLKDFGITDVIILE 35
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 3e-06
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
Query: 385 FIMNKNFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIP 442
DVI++GAG G A+ +A+ K I E + A GG G +
Sbjct: 60 LDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCII------ESSVAPGGGSWLGGQLF 113
Query: 443 SKALLQT 449
S +++
Sbjct: 114 SAMVMRK 120
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 3e-06
Identities = 71/461 (15%), Positives = 143/461 (31%), Gaps = 155/461 (33%)
Query: 448 QTSHSFENVKNSF---FEYGINTQNVTLNLQKMLERK--NNIIKKNN--SGILFLF---- 496
+ + ++++ + F F + ++V + +L ++ ++II + SG L LF
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 497 --KKNKIKFFHGHAIFTGKIQNNF----HEIQIINKTKETITAKYI--IIATGSKARSFP 548
++ ++ F ++ N+ I+ + +T YI + + F
Sbjct: 73 SKQEEMVQKF-----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 549 GVKFD---ENLILSNKGALEMINVPKKLCI---IGAG--VIGLEI------------GSI 588
K++ L + AL + K + I +G+G + L++
Sbjct: 128 --KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 589 WRRLG---SEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL 645
W L S T+LEM L +D + + NI L IH I+ +L
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLR--IHSIQAELRRLL 238
Query: 646 INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705
+ ++ LL+ + N N F N +C+ +
Sbjct: 239 KSKPYENC-------------LLV----LLNVQNAKA----WNA----F---NLSCKILL 270
Query: 706 PNIYA-IGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTE 764
+ + D + HIS HS+ T
Sbjct: 271 TTRFKQVTDFLSAA------------TTTHISLDHHSMTL------------------TP 300
Query: 765 QYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAE 824
+K + + L D+ E+L + P +IAE
Sbjct: 301 DEVK--------SLL-------LKYLDCR------PQDLPR-EVLTTN---PRRLSIIAE 335
Query: 825 AVIAIEFRASSEDIARI---CHV-HPSLSEAMKEAAMSIEN 861
++ + +A HV L+ ++ S+
Sbjct: 336 SI--------RDGLATWDNWKHVNCDKLTTIIE---SSLNV 365
|
| >1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-06
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 104 MPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142
MPS +K + ++I + GTGK+GR++KED+ L+
Sbjct: 10 MPSVRKYAREKGVDIRLVQ-GTGKNGRVLKEDIDAFLAG 47
|
| >1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-06
Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 104 MPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLK 138
MP+A+++ + +++SK+ GTG G I EDV +
Sbjct: 8 MPAARRLAKELGIDLSKVK-GTGPGGVITVEDVKR 41
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 4e-06
Identities = 40/203 (19%), Positives = 83/203 (40%), Gaps = 39/203 (19%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------PKKLCII 576
+T A+ +I+A G+ AR + V ++ L +G V + + +I
Sbjct: 111 QTHRARAVILAMGAAAR-YLQVPGEQEL--LGRG------VSSCATCDGFFFRDQDIAVI 161
Query: 577 GAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF--HLLNKQGLNIILNTKI 634
G G +E + R VT++ DE A K N + + N +
Sbjct: 162 GGGDSAMEEATFLTRFARSVTLVHRR-------DEFRASKIMLDRARNNDKIRFLTNHTV 214
Query: 635 HDIKINKENVLINYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENN 693
+ + + + +T +T + +T +F +AIG P + + + + V+ +
Sbjct: 215 VAVDGDTTVTGLRVRDTNTGAETTLPVTGVF----VAIGHEPRSG---LVREAIDVDPDG 267
Query: 694 FIIVNDN-CETNIPNIYAIGDVV 715
+++V T++P ++A GD+V
Sbjct: 268 YVLVQGRTTSTSLPGVFAAGDLV 290
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
V +IG GP G VA + L +LG +
Sbjct: 20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYE 53
|
| >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-05
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80
K G+L+ + L+ +E+ K +E+P+P+ G++ + + G + I ++
Sbjct: 21 KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 54/344 (15%), Positives = 93/344 (27%), Gaps = 81/344 (23%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV +IG GP G A++ L Q A I+ E LGG +
Sbjct: 110 DVAIIGGGPAGIGAALELQQ-YLTVALIE------ERGWLGGD-----------MWLKGI 151
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFT 511
E + + + N + L +F K +
Sbjct: 152 KQEGFNKDSRKVVEEL---------VGKLNENTKIYLETSALGVFDKGEYFLVPVV---- 198
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPK 571
I AK +++ATG+ + D + ALE++N
Sbjct: 199 ------------RGDKLIEILAKRVVLATGAIDSTMLFENNDMPGVFRRDFALEVMN--- 243
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
+ +E+ ++
Sbjct: 244 ----------------------VWEVAPGRKVAVTGSKADEVIQELERWGIDY------- 274
Query: 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE 691
I ++K + N + N + ++ D L+ A GR P+ N + L+
Sbjct: 275 VHIPNVKRVEGNEKVERVIDMNNHEYKV-----DALIFADGRRPDINPITQAGGKLRFRR 329
Query: 692 NNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
+ V D IY G + EG +V +I
Sbjct: 330 GYYSPVLDEYHRIKDGIYVAGS-AVSIKPHYANYLEGKLVGAYI 372
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID---EWKDNEEN 428
+VIG+G GG VA++RL Q G T ++ W +
Sbjct: 12 VPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSD 52
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 2e-05
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M+ +DV+++G+GP G + L G+K A D
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 76
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 2e-05
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID---EWKDNEEN 428
+VIG G G V+++RL + G +T ++ W +
Sbjct: 6 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPD 46
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 4e-05
Identities = 44/210 (20%), Positives = 83/210 (39%), Gaps = 45/210 (21%)
Query: 529 ETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV------------PKKLCII 576
T +IIATG+ AR G+ +E +G V +K+ +I
Sbjct: 101 GEYTCDALIIATGASARYL-GLPSEEAFK--GRG------VSACATSDGFFYRNQKVAVI 151
Query: 577 GAGVIGLEIGSIWRRLGSEVTIL----EMSSNFLNTVDEEI-AKKAFHLLNKQGLNIILN 631
G G +E + SEV ++ + E+I K+ + + + N
Sbjct: 152 GGGNTAVEEALYLSNIASEVHLIHRRDGFRA-------EKILIKRLMDKVENGNIILHTN 204
Query: 632 TKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN 690
+ ++ ++ V + + + E + L +AIG PNT + ++ L+
Sbjct: 205 RTLEEVTGDQMGVTGVRLRDTQNSDNIESLD--VAGLFVAIGHSPNTA-IFEGQLELE-- 259
Query: 691 ENNFIIVN-----DNCETNIPNIYAIGDVV 715
N +I V + +T+IP ++A GDV+
Sbjct: 260 -NGYIKVQSGIHGNATQTSIPGVFAAGDVM 288
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ + DV++ G G GG + + L + G + ++
Sbjct: 3 TDNHIDVLINGCGIGGAMLAYLLGRQGHRVVVVE 36
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376 | Back alignment and structure |
|---|
Score = 45.0 bits (105), Expect = 9e-05
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604
PK++ I+GAG+ GL G + R G +VTILE ++N
Sbjct: 44 PKRILIVGAGIAGLVAGDLLTRAGHDVTILEANAN 78
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Length = 549 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 39/188 (20%), Positives = 59/188 (31%), Gaps = 40/188 (21%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEE-NFALGGTCTNVGCIP---- 442
N IVIG GP G A + LAQ+GF ++ K+ E G P
Sbjct: 105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNV 164
Query: 443 ----------SKALLQTSHSFEN-----VKNSFFEYGINTQ--------NVTLNLQKMLE 479
S L + N V F E G + T L M+E
Sbjct: 165 QFGEGGAGTFSDGKLYSQVKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIE 224
Query: 480 RKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIA 539
+ I + I F + + + G + E I ++++++A
Sbjct: 225 KMRATIIELGGEIRFSTRVDDLHMEDGQITG------------VTLSNGEEIKSRHVVLA 272
Query: 540 TGSKARSF 547
G AR
Sbjct: 273 VGHSARDT 280
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG 433
+ DV+V+G+G G+ A+I G K I E+ +GG
Sbjct: 124 HDTVDVVVVGSGGAGFSAAISATDSGAKVILI------EKEPVIGG 163
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 2e-04
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 385 FIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M++ +DVIV+G G + S ++ G K +D
Sbjct: 1 HHMDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMD 36
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKT 416
+V+GAG GG +A LA+ G +
Sbjct: 2 RAVVVGAGLGGLLAGAFLARNGHEI 26
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 14/66 (21%)
Query: 369 DHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEEN 428
+D R + DV+V+GAG G A RL +LG I+ D
Sbjct: 3 GQTTVDSRRQP--------PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGD---- 50
Query: 429 FALGGT 434
+GG
Sbjct: 51 --VGGV 54
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M+ DV+VIG G G A L + G +D
Sbjct: 1 MDS-VDVVVIGGGQSGLSAGYFLRRSGLSYVILD 33
|
| >2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64 | Back alignment and structure |
|---|
Score = 39.0 bits (90), Expect = 2e-04
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 105 PSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142
P+A+ IL ++L+ S+ TG G KED LK++
Sbjct: 14 PAARNILEKHSLDASQGT-ATGPRGIFTKEDALKLVQL 50
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKT 416
+VIGAG GG +++ RL++ G +
Sbjct: 2 KTVVIGAGLGGLLSAARLSKAGHEV 26
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 3e-04
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 381 SLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGG---TCTN 437
+ +K FD +++GAG G V + RLA G + +D + +GG C +
Sbjct: 20 TTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVD--RRPH----IGGNAYDCYD 73
Query: 438 VGCI 441
+
Sbjct: 74 DAGV 77
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 3e-04
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 385 FIMNKNFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWKDNEENFALGGTCTNVGCIPS 443
I DV+V+GAG G A+ +++ + A I E++ + GG G + S
Sbjct: 34 MITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAII------EQSVSPGGGAWLGGQLFS 87
Query: 444 KALLQ 448
+++
Sbjct: 88 AMIVR 92
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ + DV++IG+G G A++ G K ++
Sbjct: 123 VKETTDVVIIGSGGAGLAAAVSARDAGAKVILLE 156
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
++DV+V+GAG G A R G + +GG
Sbjct: 19 TTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASG------VGGV 59
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT 434
+ D +VIGAG G + + Q G K I+ +D +GGT
Sbjct: 7 SPALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGED------VGGT 47
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 665 DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC-ETNIPNIYAIGDVVRG 717
D ++ A+G P D+ LKV ++V+ TN+ ++A GD+VRG
Sbjct: 368 DLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRG 421
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Length = 447 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 42/189 (22%), Positives = 69/189 (36%), Gaps = 43/189 (22%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALG--------GTC--T 436
++DVIVIG GP G +A+I A+ G + ++ LG G C T
Sbjct: 23 NAMHYDVIVIGGGPSGLMAAIGAAEEGANVLLL------DKGNKLGRKLAISGGGRCNVT 76
Query: 437 NVGCIP--SKALLQTSH----SFENVKN----SFFE-YGINTQNVTLNLQKMLERKNN-- 483
N + K + +F N +FFE G+ + +M N
Sbjct: 77 NRLPLDEIVKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKL--KEEDHGRMFPVSNKAQ 134
Query: 484 -IIKKNNSGILFLF--KKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIAT 540
++ L K +K + T + +N +I +T E + +++IA
Sbjct: 135 SVVD------ALLTRLKDLGVKIRTNTPVETIEYENG-QTKAVILQTGEVLETNHVVIAV 187
Query: 541 GSKARSFPG 549
G K S P
Sbjct: 188 GGK--SVPQ 194
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Length = 665 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQL-----GFKTACID 420
M+ DV+++GAGP G +A+ L++ K ID
Sbjct: 1 MTKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIID 43
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... Length = 621 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACI 419
+++ FD +V+GAG G A+ L++ GF TAC+
Sbjct: 14 VVDHEFDAVVVGAGGAGLRAAFGLSEAGFNTACV 47
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* Length = 660 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACI 419
D +VIG G G A++ Q G T +
Sbjct: 6 CDSLVIGGGLAGLRAAVATQQKGLSTIVL 34
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 8e-04
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 23/140 (16%)
Query: 327 LSTPIINPPQSAILGVHAIKKRV-----IVENNNVVIRPINYFALSYD---HRIIDGREA 378
+S ++ P L +K + + + +P+ + RE+
Sbjct: 1 MSPSVLEPQSVPTLVNVGLKAVGRNDAPVERDARGLSKPLLELMPTLGTDAFTFSPIRES 60
Query: 379 VLS-------LMSFIMNKNFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENF 429
+S + D++++GAG G A+ L+ L + + E
Sbjct: 61 TVSRAMTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIV------EAGV 114
Query: 430 ALGGTCTNVGCIPSKALLQT 449
A GG G + S +++
Sbjct: 115 APGGGAWLGGQLFSAMVMRK 134
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 866 | |||
| 3dva_I | 428 | Dihydrolipoyllysine-residue acetyltransferase comp | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 3mae_A | 256 | 2-oxoisovalerate dehydrogenase E2 component, dihyd | 100.0 | |
| 1scz_A | 233 | E2, dihydrolipoamide succinyltransferase; COA-depe | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 3l60_A | 250 | Branched-chain alpha-keto acid dehydrogenase; stru | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 1dpb_A | 243 | Dihydrolipoyl-transacetylase; dihydrolipoamide ace | 100.0 | |
| 2ii3_A | 262 | Lipoamide acyltransferase component of branched-C | 100.0 | |
| 3b8k_A | 239 | PDCE2;, dihydrolipoyllysine-residue acetyltransfer | 100.0 | |
| 3rqc_A | 224 | Probable lipoamide acyltransferase; alpha beta fol | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 2xt6_A | 1113 | 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 1q23_A | 219 | Chloramphenicol acetyltransferase; CAT I, trimer, | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 3cla_A | 213 | Type III chloramphenicol acetyltransferase; transf | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 2i9d_A | 217 | Chloramphenicol acetyltransferase; structural geno | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.97 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.97 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 99.97 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.97 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.97 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.96 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.96 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.96 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.96 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.96 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.96 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.95 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.95 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.95 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.95 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.95 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.95 | |
| 1zy8_K | 229 | Pyruvate dehydrogenase protein X component, mitoch | 99.94 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.94 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.94 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.93 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.91 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.9 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.89 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.85 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.77 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.76 | |
| 1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehy | 99.73 | |
| 3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase COM | 99.72 | |
| 2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic | 99.72 | |
| 1y8o_B | 128 | Dihydrolipoyllysine-residue acetyltransferase COM | 99.72 | |
| 2dne_A | 108 | Dihydrolipoyllysine-residue acetyltransferase comp | 99.71 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.68 | |
| 1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase c | 99.66 | |
| 2l5t_A | 77 | Lipoamide acyltransferase; E2 lipoyl domain; NMR { | 99.62 | |
| 1pmr_A | 80 | Dihydrolipoyl succinyltransferase; 2-oxoglutarate | 99.62 | |
| 1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, | 99.61 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.6 | |
| 1iyu_A | 79 | E2P, dihydrolipoamide acetyltransferase component | 99.56 | |
| 1gjx_A | 81 | Pyruvate dehydrogenase; oxidoreductase, lipoyl dom | 99.53 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.47 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 99.46 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.42 | |
| 2k7v_A | 85 | Dihydrolipoyllysine-residue acetyltransferase comp | 99.38 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.34 | |
| 1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structu | 99.26 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 99.25 | |
| 2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondri | 99.24 | |
| 2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, | 99.24 | |
| 2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, | 99.19 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 99.17 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 99.15 | |
| 2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; bioti | 99.14 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 99.13 | |
| 1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta s | 99.11 | |
| 2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; bio | 99.1 | |
| 1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transfera | 99.09 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.04 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 99.0 | |
| 3n6r_A | 681 | Propionyl-COA carboxylase, alpha subunit; protein | 98.93 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.92 | |
| 3rnm_E | 58 | Lipoamide acyltransferase component of branched-C | 98.92 | |
| 2eq9_C | 41 | Pyruvate dehydrogenase complex, dihydrolipoamide a | 98.91 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 98.89 | |
| 2eq8_C | 40 | Pyruvate dehydrogenase complex, dihydrolipoamide a | 98.87 | |
| 2eq7_C | 40 | 2-oxoglutarate dehydrogenase E2 component; protein | 98.87 | |
| 3va7_A | 1236 | KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A | 98.86 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 98.81 | |
| 3u9t_A | 675 | MCC alpha, methylcrotonyl-COA carboxylase, alpha-s | 98.8 | |
| 1bal_A | 51 | Dihydrolipoamide succinyltransferase; glycolysis; | 98.8 | |
| 1w85_I | 49 | Dihydrolipoyllysine-residue acetyltransferase comp | 98.76 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.75 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.74 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.73 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.7 | |
| 1w4i_A | 62 | Pyruvate dehydrogenase E2; transferase, peripheral | 98.67 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.64 | |
| 2f60_K | 64 | Pyruvate dehydrogenase protein X component; protei | 98.64 | |
| 2coo_A | 70 | Lipoamide acyltransferase component of branched- c | 98.64 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.61 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.59 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.58 | |
| 1zko_A | 136 | Glycine cleavage system H protein; TM0212, structu | 98.57 | |
| 2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 98.55 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 98.55 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.55 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.54 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.53 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.53 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.52 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 98.51 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.5 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.48 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.47 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.47 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.46 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.46 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.45 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 98.45 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.45 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.43 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.4 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.39 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.39 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.38 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.38 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.38 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.37 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.37 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.37 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.36 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.35 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.35 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.34 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.33 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.33 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.31 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.3 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 98.29 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.29 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.29 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.28 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.26 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.26 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 98.25 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.24 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.22 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.21 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.2 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.18 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.18 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.17 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.17 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.16 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 98.13 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.13 | |
| 1hpc_A | 131 | H protein of the glycine cleavage system; transit | 98.12 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.11 | |
| 3a7l_A | 128 | H-protein, glycine cleavage system H protein; lipo | 98.1 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.1 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.09 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.08 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.08 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.06 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.06 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.03 | |
| 1onl_A | 128 | Glycine cleavage system H protein; hybrid barrel-s | 98.03 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 98.01 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.99 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 97.98 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 97.96 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.95 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.95 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.94 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 97.94 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 97.93 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.93 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 97.92 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 97.92 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 97.91 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 97.9 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 97.9 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 97.89 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 97.89 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 97.89 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 97.88 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.88 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 97.88 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 97.88 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 97.88 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 97.88 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 97.87 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 97.87 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 97.85 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.83 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 97.82 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 97.81 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 97.81 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 97.79 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.77 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.77 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 97.76 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 97.76 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 97.74 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 97.74 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 97.73 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 97.73 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 97.72 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 97.72 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 97.72 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 97.69 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 97.69 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 97.67 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 97.66 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 97.66 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 97.65 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 97.64 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 97.64 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 97.63 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 97.63 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 97.63 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.63 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 97.62 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.62 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 97.6 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 97.6 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.6 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 97.59 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 97.58 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.58 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.58 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 97.58 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 97.57 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 97.57 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.56 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 97.56 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.55 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 97.55 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.55 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 97.54 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 97.54 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 97.52 | |
| 3klr_A | 125 | Glycine cleavage system H protein; antiparallel be | 97.51 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.5 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 97.5 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 97.5 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.49 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.49 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 97.49 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 97.48 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 97.48 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.47 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.47 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 97.47 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 97.47 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.47 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 97.47 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 97.47 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 97.46 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 97.46 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.45 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.45 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.45 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.44 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.44 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 97.43 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.43 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 97.42 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 97.41 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.41 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.39 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 97.39 | |
| 3mxu_A | 143 | Glycine cleavage system H protein; seattle structu | 97.39 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 97.39 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 97.39 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 97.38 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.38 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 97.38 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 97.37 | |
| 3ne5_B | 413 | Cation efflux system protein CUSB; transmembrane h | 97.37 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 97.37 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.36 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.36 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.35 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.35 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.35 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.34 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 97.34 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 97.34 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.33 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.33 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 97.32 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.32 | |
| 3tzu_A | 137 | GCVH, glycine cleavage system H protein 1; ssgcid, | 97.32 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.31 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.29 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 97.27 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.27 | |
| 3lnn_A | 359 | Membrane fusion protein (MFP) heavy metal cation Z | 97.26 | |
| 2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, | 97.26 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 97.26 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.26 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.23 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 97.22 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.21 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.2 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.2 | |
| 3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric | 97.18 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.18 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.18 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.15 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 97.15 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.15 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.13 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 97.12 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.09 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.09 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.09 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.06 | |
| 3hgb_A | 155 | Glycine cleavage system H protein; ssgcid, niaid, | 97.06 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.05 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.04 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.04 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.02 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 96.99 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 96.97 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.97 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 96.95 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.94 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 96.91 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 96.91 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 96.89 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 96.87 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 96.86 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 96.85 | |
| 1vf7_A | 369 | Multidrug resistance protein MEXA; alpha hairpin, | 96.84 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 96.83 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 96.8 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 96.78 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 96.75 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 96.75 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 96.72 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 96.71 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 96.7 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 96.67 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 96.66 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 96.66 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 96.6 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 96.52 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 96.5 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 96.49 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 96.49 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 96.45 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 96.43 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 96.38 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 96.3 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.29 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 96.22 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 96.18 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.07 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 96.05 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 96.0 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 95.98 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 95.88 | |
| 4dk0_A | 369 | Putative MACA; alpha-hairpin, lipoyl, beta-barrel, | 95.82 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 95.82 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 95.78 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 95.69 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 95.66 | |
| 2dn8_A | 100 | Acetyl-COA carboxylase 2; biotin required enzyme, | 95.65 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 95.59 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 95.57 | |
| 3na6_A | 331 | Succinylglutamate desuccinylase/aspartoacylase; st | 95.54 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 95.44 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 95.42 | |
| 3cdx_A | 354 | Succinylglutamatedesuccinylase/aspartoacylase; str | 95.38 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 95.37 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 95.3 | |
| 3fmc_A | 368 | Putative succinylglutamate desuccinylase / aspart; | 95.23 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 95.21 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 95.1 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 95.0 | |
| 1z6h_A | 72 | Biotin/lipoyl attachment protein; solution structu | 94.99 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 94.95 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 94.86 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 94.79 | |
| 2d5d_A | 74 | Methylmalonyl-COA decarboxylase gamma chain; bioti | 94.66 | |
| 1dcz_A | 77 | Transcarboxylase 1.3S subunit; antiparallel beta s | 94.62 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.39 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 94.36 | |
| 2k32_A | 116 | A; NMR {Campylobacter jejuni} PDB: 2k33_A* | 94.19 | |
| 2kcc_A | 84 | Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, | 93.93 | |
| 1f3z_A | 161 | EIIA-GLC, glucose-specific phosphocarrier; phospho | 93.15 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 93.04 | |
| 2qj8_A | 332 | MLR6093 protein; structural genomics, joint center | 92.43 | |
| 2gpr_A | 154 | Glucose-permease IIA component; phosphotransferase | 92.07 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 91.79 | |
| 2ejm_A | 99 | Methylcrotonoyl-COA carboxylase subunit alpha; bio | 91.77 | |
| 1bdo_A | 80 | Acetyl-COA carboxylase; BCCPSC, carboxyl transfera | 91.64 | |
| 2jku_A | 94 | Propionyl-COA carboxylase alpha chain, mitochondri | 91.47 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 91.44 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 91.32 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 91.27 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 91.04 | |
| 1ax3_A | 162 | Iiaglc, glucose permease IIA domain; phosphotransf | 90.86 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 90.8 | |
| 2f1m_A | 277 | Acriflavine resistance protein A; helical hairpin, | 90.78 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.73 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 90.6 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 90.29 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 90.25 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 89.92 | |
| 2l5t_A | 77 | Lipoamide acyltransferase; E2 lipoyl domain; NMR { | 89.77 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 89.71 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 89.59 | |
| 2xha_A | 193 | NUSG, transcription antitermination protein NUSG; | 89.34 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 88.92 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 88.83 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 88.77 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 88.67 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 88.56 | |
| 3lnn_A | 359 | Membrane fusion protein (MFP) heavy metal cation Z | 88.52 | |
| 3crk_C | 87 | Dihydrolipoyllysine-residue acetyltransferase COM | 88.38 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 88.27 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 88.23 | |
| 1ghj_A | 79 | E2, E2, the dihydrolipoamide succinyltransferase c | 88.18 | |
| 1qjo_A | 80 | Dihydrolipoamide acetyltransferase; lipoyl domain, | 88.13 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 88.01 | |
| 3fpp_A | 341 | Macrolide-specific efflux protein MACA; hexameric | 87.8 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 87.68 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 87.54 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 87.53 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 87.49 | |
| 2dnc_A | 98 | Pyruvate dehydrogenase protein X component; lipoic | 87.39 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 87.19 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 87.19 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 87.19 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 87.1 | |
| 1k8m_A | 93 | E2 component of branched-chain ahpha-ketoacid dehy | 87.01 |
| >3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-82 Score=699.97 Aligned_cols=382 Identities=34% Similarity=0.585 Sum_probs=38.8
Q ss_pred CccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 1 m~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
|+ ++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+.|++|++|+.|+.+
T Consensus 1 M~-~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~ 79 (428)
T 3dva_I 1 MA-FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 79 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 44 78999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred Cccccc--------c---cc---cc-cc-----ccc---------cccccccchhHHHhhhhCCCCcccccCCCCCCCce
Q psy9583 81 ISKLSS--------K---TE---IK-NK-----KDI---------KNLNTIVMPSAKKILSDNNLEISKINNGTGKDGRI 131 (866)
Q Consensus 81 ~~~~~~--------~---~~---~~-~~-----~~~---------~~~~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i 131 (866)
++..++ . +. .+ +. ++. ...+..+||+||+||+|+||||+.| +||||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v-~gtG~~GrI 158 (428)
T 3dva_I 80 GYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLV-QGTGKNGRV 158 (428)
T ss_dssp ------------------------------------------------CCCCCHHHHHHHHHTTCCGGGS-CCCSTTSCC
T ss_pred CccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHC-CCCCCCCce
Confidence 432100 0 00 00 00 000 0123578999999999999999999 899999999
Q ss_pred eehhHHhhhhhccccccccc-cccCCCccccccccCCCccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHH
Q psy9583 132 IKEDVLKVLSSIKNINEEKQ-EKYKPYLDSISIKNNSRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDL 210 (866)
Q Consensus 132 ~~~Dv~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~ 210 (866)
+++||++|+........... ....+..............+++||++|||+||++|++||+++||||++.++|+|+|+++
T Consensus 159 ~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~ 238 (428)
T 3dva_I 159 LKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAH 238 (428)
T ss_dssp CTTTTTTTSCC---------------------------------------------------------------------
T ss_pred eHHHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHH
Confidence 99999999754221110000 00000000000001112357899999999999999999999999999999999999999
Q ss_pred HHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeC--CeeEEccceeEEEEEecCCceEEeEEecCCCCCHHH
Q psy9583 211 RLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDG--NNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIAD 288 (866)
Q Consensus 211 r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~--~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~ 288 (866)
|+++++.++ +.|.|+||++||+||+++||++||+||++|++ +++++++++|||+||++++||++|||++++++|+.+
T Consensus 239 rk~~~~~~~-~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~e 317 (428)
T 3dva_I 239 RKKFKAIAA-EKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFA 317 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhHh-hcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHH
Confidence 999987543 45899999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecc
Q psy9583 289 IEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSY 368 (866)
Q Consensus 289 i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~ 368 (866)
|+++++++.+++|+|+|.++|++||||||||+||+|+++|+|||||||+|||++|++.++|++.+|++++|++|+++|++
T Consensus 318 ia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g~i~~r~~m~lsls~ 397 (428)
T 3dva_I 318 LAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSF 397 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECCEEEEeeeEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhhhhhh
Q psy9583 369 DHRIIDGREAVLSLMSF 385 (866)
Q Consensus 369 dhr~~dg~~a~~~~~~~ 385 (866)
|||++||.++++|+...
T Consensus 398 DHRviDG~~aa~Fl~~l 414 (428)
T 3dva_I 398 DHRMIDGATAQKALNHI 414 (428)
T ss_dssp -----------------
T ss_pred cccccchHHHHHHHHHH
Confidence 99999999999887643
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-73 Score=655.67 Aligned_cols=456 Identities=26% Similarity=0.435 Sum_probs=383.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCC--cccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDN--EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~--~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+||++||||||||+.||.+++++|.+|+|||+.+.. ..+..+||+|+|+||+|+|.++..++..+........+|+..
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~~ 121 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWKF 121 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCccc
Confidence 499999999999999999999999999999975211 113569999999999999999999988877765567789888
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcC----CceEEEecEEEEecCCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINK----TKETITAKYIIIATGSK 543 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~----~g~~i~~d~lViATGs~ 543 (866)
....+||.++..+.+..++.+...+...+++.+|+++.|...+.+. +++.+... +++++++|++|||||++
T Consensus 122 ~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~-----~~v~V~~~~~~~~~~~i~a~~iiIATGs~ 196 (542)
T 4b1b_A 122 DNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDK-----NTVSYYLKGDLSKEETVTGKYILIATGCR 196 (542)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEET-----TEEEEEEC--CCCEEEEEEEEEEECCCEE
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCC-----CcceEeecccCCceEEEeeeeEEeccCCC
Confidence 7788999999999999999999999999999999999999999887 88877542 33789999999999999
Q ss_pred CcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH
Q psy9583 544 ARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK 623 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~ 623 (866)
|..||..+.....++|+++++++...|++++|||||++|+|+|+.|+++|.+||++.+ +++++.+|+++.+.+.+.|++
T Consensus 197 P~~P~~~~~~~~~~~ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~~~D~ei~~~l~~~l~~ 275 (542)
T 4b1b_A 197 PHIPDDVEGAKELSITSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLRGFDQQCAVKVKLYMEE 275 (542)
T ss_dssp ECCCSSSBTHHHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSSTTSCHHHHHHHHHHHHH
T ss_pred CCCCCcccCCCccccCchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-cccccccchhHHHHHHHHHHh
Confidence 9988877666677899999999999999999999999999999999999999999987 578899999999999999999
Q ss_pred cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCc-EEeCCCCC
Q psy9583 624 QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNF-IIVNDNCE 702 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~-i~Vd~~l~ 702 (866)
+||.++++..+.+++..++.+.+.+. ++. .+.+|.|++|+|++||++.|+++.+|+.++.+|+ |.||+++|
T Consensus 276 ~gi~~~~~~~v~~~~~~~~~~~v~~~--~~~------~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~ 347 (542)
T 4b1b_A 276 QGVMFKNGILPKKLTKMDDKILVEFS--DKT------SELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSC 347 (542)
T ss_dssp TTCEEEETCCEEEEEEETTEEEEEET--TSC------EEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSB
T ss_pred hcceeecceEEEEEEecCCeEEEEEc--CCC------eEEEEEEEEcccccCCccccCcccceeeecccCceEecccccc
Confidence 99999999999999998888877775 554 7889999999999999999999999999987665 47899999
Q ss_pred CCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEe
Q psy9583 703 TNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFP 780 (866)
Q Consensus 703 Ts~~~VyA~GD~a~~-~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~ 780 (866)
|++|+|||+|||+++ |++++.|.+||+++++||++.. ...++..+|+++|++|++++||+||+||++++.++.+..++
T Consensus 348 Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~vft~PeiA~VGlTE~eA~~~g~~~~v~~~~ 427 (542)
T 4b1b_A 348 TNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKDSDEIMDYSYIPTSIYTPIEYGACGYSEEKAYELYGKSNVEVFL 427 (542)
T ss_dssp CSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEEECSSSCEEEEECCHHHHHHHHCTTTEEEEE
T ss_pred ccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcCCCcccCCCCCceEEeCCCCeEEEeCCHHHHHHhCCCCcEEEEE
Confidence 999999999999965 6899999999999999999865 45689999999999999999999999999988776666665
Q ss_pred cCCchhh-----------------hhcCCceEEEEEEE-ECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHcccc
Q psy9583 781 FLANSRA-----------------RILGETSGMVKILS-DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARIC 842 (866)
Q Consensus 781 ~~~~~~~-----------------~~~~~~~g~~kli~-~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~ 842 (866)
+..+.++ .+.+++.||+|+|+ ++++++|||+|++|++|.|||+.+++||++++|++||++++
T Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI~~~alAi~~~~t~~dl~~~i 507 (542)
T 4b1b_A 428 QEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVTQGMALALRLKVKKKDFDNCI 507 (542)
T ss_dssp C-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHHHHHHHHHHTCCBHHHHHHC-
T ss_pred eeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccC
Confidence 5443322 12345679999986 56789999999999999999999999999999999999999
Q ss_pred ccCCChhHHHHHHHHHh
Q psy9583 843 HVHPSLSEAMKEAAMSI 859 (866)
Q Consensus 843 ~~~Pt~~e~~~~~~~~~ 859 (866)
|+|||++|+|.++++.+
T Consensus 508 ~~HPTlsE~l~~~~~t~ 524 (542)
T 4b1b_A 508 GIHPTDAESFMNLFVTI 524 (542)
T ss_dssp -----------------
T ss_pred CcCCCHHHHHHHHHHHH
Confidence 99999999999988765
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-70 Score=629.91 Aligned_cols=461 Identities=45% Similarity=0.766 Sum_probs=423.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+|||||+||++||.+|++.|++|+|||+. +.+||+|.+.||+|++.++.....+......+..+++....
T Consensus 25 ~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~------~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~ 98 (491)
T 3urh_A 25 AYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKR------STYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVAN 98 (491)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS------SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecC------CCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCC
Confidence 599999999999999999999999999999987 68999999999999999999988888777656788888777
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARSF 547 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~~ 547 (866)
..++|..+..+.+.....+...+..++++.+++++.+...+.+. +.+.+.+.++ ..+.||+||||||+.|..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~v~~~~g~~~~~~~d~lViATGs~p~~i 173 (491)
T 3urh_A 99 PKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQ-----GKVSVTNEKGEEQVLEAKNVVIATGSDVAGI 173 (491)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSS-----SEEEEECTTSCEEEEECSEEEECCCEECCCB
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecC-----CEEEEEeCCCceEEEEeCEEEEccCCCCCCC
Confidence 88999999999999999988888899999999999999998766 7788877665 6899999999999998777
Q ss_pred CCCc--CCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 548 PGVK--FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 548 p~~~--~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
|+.. ..+..++++.+...+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|++.|
T Consensus 174 pg~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~g 253 (491)
T 3urh_A 174 PGVEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQG 253 (491)
T ss_dssp TTBCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTT
T ss_pred CCcccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHhCC
Confidence 7765 45667889999988888899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCceEEEEEEcCCeEEEEEeeCC-CCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 626 LNIILNTKIHDIKINKENVLINYSNKS-TNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~~v~~~~~~-g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
|++++++++++++.+++.+.+.+.+.+ |. ..++++|.|++|+|++|++++++++..|++++++|+|.||+++||+
T Consensus 254 V~v~~~~~v~~i~~~~~~~~v~~~~~~~g~----~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~ 329 (491)
T 3urh_A 254 IDFKLGAKVTGAVKSGDGAKVTFEPVKGGE----ATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHFQTS 329 (491)
T ss_dssp CEEECSEEEEEEEEETTEEEEEEEETTSCC----CEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTCBCS
T ss_pred CEEEECCeEEEEEEeCCEEEEEEEecCCCc----eEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCCCCC
Confidence 999999999999988888777776422 32 2479999999999999999988788899999999999999999999
Q ss_pred CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCc
Q psy9583 705 IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784 (866)
Q Consensus 705 ~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~ 784 (866)
+|+|||+|||++.|++++.|..||++||+||+|...++++..+|+++|++|+++++|+||+||++.|+++.+.++++...
T Consensus 330 ~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~ 409 (491)
T 3urh_A 330 IAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQAGHVNYDVIPGVVYTQPEVASVGKTEEELKAAGVAYKIGKFPFTAN 409 (491)
T ss_dssp STTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSCCCCCTTCCCEEECSSSCEEEEECCHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCCcccCCCCCCEEEEccCCeEEEeCCHHHHHhCCCCEEEEEEecCcc
Confidence 99999999999999999999999999999999988778889999999999999999999999999999999999999999
Q ss_pred hhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhcc
Q psy9583 785 SRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864 (866)
Q Consensus 785 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~ 864 (866)
.++.+.+++.||+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++++|||++|++.++++.+.++.+
T Consensus 410 ~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~ 489 (491)
T 3urh_A 410 GRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRTCHAHPTMSEAVKEAALSTFFKPI 489 (491)
T ss_dssp HHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHC---
T ss_pred hhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHHHhhhccc
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999998887665
Q ss_pred C
Q psy9583 865 N 865 (866)
Q Consensus 865 ~ 865 (866)
|
T Consensus 490 ~ 490 (491)
T 3urh_A 490 H 490 (491)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-70 Score=629.00 Aligned_cols=466 Identities=47% Similarity=0.824 Sum_probs=428.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+|||||+||++||.+|++.|++|+|||+++.+.....+||+|.+.||+|++.++.....+......+..+++....
T Consensus 3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~ 82 (476)
T 3lad_A 3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGE 82 (476)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 59999999999999999999999999999999754444456999999999999999999888888777666788888777
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARSF 547 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~~ 547 (866)
..++|..+..+.+.+.+.+...+..++++.+++++.+...+.+. +.+.+.+.++ ..+.||+||||||+.|..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~ 157 (476)
T 3lad_A 83 VAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAG-----KKVEVTAADGSSQVLDTENVILASGSKPVEI 157 (476)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECST-----TCEEEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC-----CEEEEEcCCCceEEEEcCEEEEcCCCCCCCC
Confidence 78899999999999999888888888999999999999988766 6778876666 6899999999999999888
Q ss_pred CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCE
Q psy9583 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~ 627 (866)
|+.+.....++++.++..+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|++.||+
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 237 (476)
T 3lad_A 158 PPAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLK 237 (476)
T ss_dssp TTSCCCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCcccEEechhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCE
Confidence 77776777889999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCC
Q psy9583 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707 (866)
Q Consensus 628 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~ 707 (866)
+++++++++++.+++.+.+.+.+.+| ...+++|.|++|+|++|+++.+.++..|++++++|+|.||+++||++|+
T Consensus 238 v~~~~~v~~i~~~~~~~~v~~~~~~g-----~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~ 312 (476)
T 3lad_A 238 ILLGARVTGTEVKNKQVTVKFVDAEG-----EKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPG 312 (476)
T ss_dssp EEETCEEEEEEECSSCEEEEEESSSE-----EEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTT
T ss_pred EEECCEEEEEEEcCCEEEEEEEeCCC-----cEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCcccCCCC
Confidence 99999999999887777777764333 2479999999999999999987788999999999999999999999999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhh
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRA 787 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~ 787 (866)
|||+|||++.+++++.|..||++||+||+|...++++..+|+++|++|+++++|+||+||++.|+++.+..+++..+.++
T Consensus 313 Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~ 392 (476)
T 3lad_A 313 VYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRA 392 (476)
T ss_dssp EEECGGGSSSCCCHHHHHHHHHHHHHHHHHCCCCCCTTCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHH
T ss_pred EEEEEccCCCcccHHHHHHHHHHHHHHhcCCCcccCCCCCCEEEECcCCEEEeeCCHHHHHhcCCCEEEEEEeccccchh
Confidence 99999999999999999999999999999988778899999999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccC
Q psy9583 788 RILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865 (866)
Q Consensus 788 ~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 865 (866)
.+.+++.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++.+.++.+|
T Consensus 393 ~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~~~~~~~~ 470 (476)
T 3lad_A 393 MAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHAIH 470 (476)
T ss_dssp HHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCCTT
T ss_pred eecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCccCCCChHHHHHHHHHHHhccccc
Confidence 999889999999999999999999999999999999999999999999999999999999999999999998877655
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-68 Score=612.64 Aligned_cols=460 Identities=33% Similarity=0.574 Sum_probs=411.8
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|+.+|||+|||||+||++||.+|++.|++|+|||+. +.+||+|.+.+|+|++.++......+.+.. +..+|+.
T Consensus 3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~------~~~GG~~~~~g~~psk~ll~~~~~~~~~~~-~~~~gi~ 75 (482)
T 1ojt_A 3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERY------KTLGGVCLNVGCIPSKALLHNAAVIDEVRH-LAANGIK 75 (482)
T ss_dssp SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS------SCSSHHHHHHSHHHHHHHHHHHHHHHHHHH-GGGGTCC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC------CCCCCceeeecccchHHHHHHHHHHHHHHH-HHhCCcc
Confidence 555699999999999999999999999999999997 679999999999999999887777766644 5667777
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc------------eEEEec
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK------------ETITAK 534 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g------------~~i~~d 534 (866)
.....+++..+..+.......+...+..++++.+++++.++.++.+. +.+.+...++ .++.||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~-----~~v~v~~~~g~~~~~~~~~g~~~~i~ad 150 (482)
T 1ojt_A 76 YPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDP-----HHLEVSLTAGDAYEQAAPTGEKKIVAFK 150 (482)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET-----TEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccC-----CEEEEEecCCcccccccccCcceEEEcC
Confidence 66667889999988888888888888888889999999999887654 6677754334 679999
Q ss_pred EEEEecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHH
Q psy9583 535 YIIIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIA 614 (866)
Q Consensus 535 ~lViATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~ 614 (866)
+||+|||+.|..||+.+.+. .+++++++..+...+++++|||||++|+|+|..|+++|.+|+++++.+++++.+++++.
T Consensus 151 ~lViAtGs~p~~~~~i~~~~-~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~ 229 (482)
T 1ojt_A 151 NCIIAAGSRVTKLPFIPEDP-RIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLV 229 (482)
T ss_dssp EEEECCCEEECCCSSCCCCT-TEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHH
T ss_pred EEEECCCCCCCCCCCCCccC-cEEcHHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHH
Confidence 99999999998776444333 57889988888878999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEee-CC-CCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCC
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSN-KS-TNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNEN 692 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~-~~-g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~ 692 (866)
+.+.+.|++.||++++++.|++++.+++.+.+.+.+ .+ |. ++++|.|++|+|++||+++++++++|++++++
T Consensus 230 ~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~------~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~ 303 (482)
T 1ojt_A 230 KVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKE------PQRYDAVLVAAGRAPNGKLISAEKAGVAVTDR 303 (482)
T ss_dssp HHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSS------CEEESCEEECCCEEECGGGTTGGGTTCCCCTT
T ss_pred HHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCce------EEEcCEEEECcCCCcCCCCCChhhcCceeCCC
Confidence 999999999999999999999999877677777652 11 43 67899999999999999987778999999888
Q ss_pred CcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCC
Q psy9583 693 NFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNI 772 (866)
Q Consensus 693 G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~ 772 (866)
|+|.||++|||++|+|||+|||++.+++++.|.+||++||+||++...++++..+|+++|++|+++++|+||+||++.|+
T Consensus 304 G~i~vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~ 383 (482)
T 1ojt_A 304 GFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFDARVIPGVAYTSPEVAWVGETELSAKASAR 383 (482)
T ss_dssp SCCCCCTTSBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECSSSCEEEEECCHHHHHHHTC
T ss_pred CCEeeCCCcccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEEcCCCeEEEeCCHHHHHhcCC
Confidence 99999999999999999999999989999999999999999999987778888899999999999999999999999999
Q ss_pred cEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHH
Q psy9583 773 SYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAM 852 (866)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~ 852 (866)
++.+..+++....++.+.+++.+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~ 463 (482)
T 1ojt_A 384 KITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESI 463 (482)
T ss_dssp CEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHH
T ss_pred CEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHH
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccC
Q psy9583 853 KEAAMSIENRSIN 865 (866)
Q Consensus 853 ~~~~~~~~~~~~~ 865 (866)
.++++.+.++.+|
T Consensus 464 ~~a~~~~~~~~~~ 476 (482)
T 1ojt_A 464 GMAAEVALGTCTD 476 (482)
T ss_dssp HHHHHHHHTCCTT
T ss_pred HHHHHHHhccccc
Confidence 9999888765544
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-67 Score=608.06 Aligned_cols=461 Identities=46% Similarity=0.802 Sum_probs=413.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc-c
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT-Q 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~-~ 468 (866)
+|||+|||||+||++||.+|++.|++|+|||++ +.+||+|.+.||+|++.++......+.+...+..+|++. .
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~------~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~ 75 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKR------GALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGE 75 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS------SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC------CCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 489999999999999999999999999999997 689999999999999999888777666554355667764 4
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARS 546 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~ 546 (866)
....+|..+..+.+.+.+.+...+..++++.+++++.++.++++. +.+.+.+.+| ..+.||+||+|||+.|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~-----~~~~v~~~~G~~~~~~~d~lviAtG~~p~~ 150 (468)
T 2qae_A 76 GVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETA-----HSIRVNGLDGKQEMLETKKTIIATGSEPTE 150 (468)
T ss_dssp GCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEET-----TEEEEEETTSCEEEEEEEEEEECCCEEECC
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC-----CEEEEEecCCceEEEEcCEEEECCCCCcCC
Confidence 456789999988888888888888888888999999999888765 6777776666 789999999999999987
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHH-HHcC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL-NKQG 625 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l-~~~G 625 (866)
|+..+.+...+++++++..+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+|+++.+.+.+.| ++.|
T Consensus 151 p~~~g~~~~~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~g 230 (468)
T 2qae_A 151 LPFLPFDEKVVLSSTGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEK 230 (468)
T ss_dssp BTTBCCCSSSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCceechHHHhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCC
Confidence 766655555688999998888889999999999999999999999999999999999999999999999999999 9999
Q ss_pred CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
|+++++++|++++.+++++.+.+...+|. ..++++|.|++|+|++|+++++.++++|++++++|+|.||++|||++
T Consensus 231 v~i~~~~~v~~i~~~~~~~~v~~~~~~g~----~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~ 306 (468)
T 2qae_A 231 MKFMTSTKVVGGTNNGDSVSLEVEGKNGK----RETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSI 306 (468)
T ss_dssp CEEECSCEEEEEEECSSSEEEEEECC-------EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSS
T ss_pred cEEEeCCEEEEEEEcCCeEEEEEEcCCCc----eEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCC
Confidence 99999999999998766666666522342 24799999999999999999877788899998889999999999999
Q ss_pred CCEEEecccCC-CCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCc
Q psy9583 706 PNIYAIGDVVR-GPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN 784 (866)
Q Consensus 706 ~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~ 784 (866)
|+|||+|||++ .+++++.|.+||++||+||++...++++..+|+++|++|+++++|++|++|++.|+++.+..+++...
T Consensus 307 ~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~ 386 (468)
T 2qae_A 307 PDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMPEVASVGKSEDELKKEGVAYKVGKFPFNAN 386 (468)
T ss_dssp TTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTCCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEecccc
Confidence 99999999999 89999999999999999999987777888999999999999999999999999999999999999999
Q ss_pred hhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhcc
Q psy9583 785 SRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSI 864 (866)
Q Consensus 785 ~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~ 864 (866)
.++.+.+++.+|+|+++|+++++|||+|++|+.+.|+|+.+++||++++|++||.+++++|||++|++.++++.+.++.+
T Consensus 387 ~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~ 466 (468)
T 2qae_A 387 SRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACMALFAKTI 466 (468)
T ss_dssp HHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTHHHHHHHHHHHHSCCS
T ss_pred hhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHHhcccc
Confidence 99998888899999999998999999999999999999999999999999999999999999999999999988877666
Q ss_pred C
Q psy9583 865 N 865 (866)
Q Consensus 865 ~ 865 (866)
|
T Consensus 467 ~ 467 (468)
T 2qae_A 467 N 467 (468)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-67 Score=603.95 Aligned_cols=459 Identities=48% Similarity=0.806 Sum_probs=412.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHh-hhhhhcCcccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVK-NSFFEYGINTQ 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~-~~~~~~gi~~~ 468 (866)
++||+|||||+||++||.+|++.|++|+|||++ +.+||+|.+.||+|++.++.....++.+. ..+..+|++..
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~------~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~ 79 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKN------ETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMS 79 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS------SSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEES
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC------CCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccC
Confidence 489999999999999999999999999999997 68999999999999999988777766554 12556777755
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCC-c-eEEEecEEEEecCCCCcC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKT-K-ETITAKYIIIATGSKARS 546 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~-g-~~i~~d~lViATGs~p~~ 546 (866)
....+|..+..+.+.+.+.+...+..++++.+++++.++.++++. +.+.+.+.+ + .++.||+||+|||+.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~-----~~~~v~~~~gg~~~~~~d~lViAtGs~p~~ 154 (474)
T 1zmd_A 80 EVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGK-----NQVTATKADGGTQVIDTKNILIATGSEVTP 154 (474)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEET-----TEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecC-----CEEEEEecCCCcEEEEeCEEEECCCCCCCC
Confidence 567889999998888888888888888889999999999887765 677787655 4 679999999999999988
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHHHHHHHcC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~G 625 (866)
|+.++.+...+++++++..+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.|++.|
T Consensus 155 p~i~g~~~~~v~t~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G 234 (474)
T 1zmd_A 155 FPGITIDEDTIVSSTGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG 234 (474)
T ss_dssp CTTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCcEEcHHHHhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCC
Confidence 7766655556889998888877899999999999999999999999999999999999998 899999999999999999
Q ss_pred CEEEeCceEEEEEEcCCe-EEEEEee---CCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC
Q psy9583 626 LNIILNTKIHDIKINKEN-VLINYSN---KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~-~~v~~~~---~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l 701 (866)
|++++++.|++++.++++ +.+.+.. .++ .++++|.|++|+|++|+++++.++++|++++++|+|.||++|
T Consensus 235 v~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~------~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 308 (474)
T 1zmd_A 235 FKFKLNTKVTGATKKSDGKIDVSIEAASGGKA------EVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRF 308 (474)
T ss_dssp CEEECSEEEEEEEECTTSCEEEEEEETTSCCC------EEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTC
T ss_pred CEEEeCceEEEEEEcCCceEEEEEEecCCCCc------eEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCC
Confidence 999999999999987655 6666532 233 379999999999999999987678889999888999999999
Q ss_pred CCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEec
Q psy9583 702 ETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPF 781 (866)
Q Consensus 702 ~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~ 781 (866)
||++|+|||+|||++.+++++.|.+||++||+||++...++++..+|+++|++|+++++|++|+||++.|+++.+..+++
T Consensus 309 ~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~ 388 (474)
T 1zmd_A 309 QTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGGAVHIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPF 388 (474)
T ss_dssp BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEG
T ss_pred ccCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHhcCCCEEEEEEec
Confidence 99999999999999989999999999999999999987777888999999999999999999999999999999999999
Q ss_pred CCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHh-h
Q psy9583 782 LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI-E 860 (866)
Q Consensus 782 ~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~-~ 860 (866)
....++.+.++..+|+|+++|+++++|||+|++|+.+.|+|+.+++||++++|++||.+++++|||++|++.++++.+ +
T Consensus 389 ~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~ 468 (474)
T 1zmd_A 389 AANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAASF 468 (474)
T ss_dssp GGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTCTHHHHHHHHHHHHH
T ss_pred ccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHHHHhc
Confidence 999999888888999999999989999999999999999999999999999999999999999999999999999887 6
Q ss_pred hhccC
Q psy9583 861 NRSIN 865 (866)
Q Consensus 861 ~~~~~ 865 (866)
++.+|
T Consensus 469 ~~~~~ 473 (474)
T 1zmd_A 469 GKSIN 473 (474)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 66555
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-67 Score=605.75 Aligned_cols=453 Identities=25% Similarity=0.392 Sum_probs=404.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+||||||||++||.+|++.|++|+|||++ .+||+|.+.||+|+|.++..++..+.... +..+|++...
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-------~~GGtc~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~~~~ 79 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-------AYGTTCARVGCMPSKLLIAAADASYHASQ-TDLFGIQVDR 79 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-------CSSCHHHHHSHHHHHHHHHHHHHHHHHTC-GGGGTEECSE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-------CCCCcccccChhcCHHHHHHHHHHHHHhh-hhhcCcCCCC
Confidence 599999999999999999999999999999995 59999999999999999999888777665 6777887666
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHh-CCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p 548 (866)
..++|..+..+.......+...+...+.. .+++++.+...+.+. +++.+ .++..+.||+||||||++|..|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~-----~~v~~--~~~~~~~~d~lViATGs~p~~p~ 152 (492)
T 3ic9_A 80 ISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDE-----HTLQV--DDHSQVIAKRIVIATGSRPNYPE 152 (492)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEET-----TEEEE--TTTEEEEEEEEEECCCEECCCCH
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecC-----CEEEE--cCCcEEEeCEEEEccCCCCcCCC
Confidence 67899888888777766665555444444 367889999888766 67766 45688999999999999999776
Q ss_pred CCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEE
Q psy9583 549 GVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 628 (866)
.++.....++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|++. |++
T Consensus 153 ~~~~~~~~v~t~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i 231 (492)
T 3ic9_A 153 FLAAAGSRLLTNDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYF 231 (492)
T ss_dssp HHHTTGGGEECHHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEE
T ss_pred CCCccCCcEEcHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEE
Confidence 5544566789999999888889999999999999999999999999999999999999999999999999999998 999
Q ss_pred EeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeC-CCCCCCCCC
Q psy9583 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVN-DNCETNIPN 707 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd-~~l~Ts~~~ 707 (866)
++++.+++++.+++++.+.+.+.+|. ..++++|.|++|+|++|+++++.++.+|++++++|+|.|| +++||++|+
T Consensus 232 ~~~~~v~~i~~~~~~v~v~~~~~~G~----~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~ 307 (492)
T 3ic9_A 232 DAKARVISTIEKEDAVEVIYFDKSGQ----KTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDH 307 (492)
T ss_dssp ETTCEEEEEEECSSSEEEEEECTTCC----EEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTT
T ss_pred EECCEEEEEEEcCCEEEEEEEeCCCc----eEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCC
Confidence 99999999998877777777533452 2489999999999999999998889999999999999999 999999999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCC--CCCCCCCCccEEEEccCceeeeecCHHHHHhcC-----CcEEEEEEe
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ--KHSINFNALPFVIYTFPEIASVGKTEQYLKKHN-----ISYNVGIFP 780 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~--~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~-----~~~~~~~~~ 780 (866)
|||+|||++.+++++.|..||++||.||++. ....++..+|+++|++|+++++|+||+||++.+ +++.+.+++
T Consensus 308 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~g~~~g~~~~~~~~~ 387 (492)
T 3ic9_A 308 IFVAGDANNTLTLLHEAADDGKVAGTNAGAYPVIAQGQRRAPLSVVFTEPQVASVGLSLRQIEDLYADQDAANYVVGQVS 387 (492)
T ss_dssp EEECGGGGTSSCSHHHHHHHHHHHHHHHHHTTSCCEECCCCCEEEECSSSEEEEEESCHHHHHHHCSCSSSCCEEEEEEE
T ss_pred EEEEEecCCCCccHHHHHHHHHHHHHHHcCCCCCcccCCCCCcEEEECCCCeEEecCCHHHHHhccCccCCccEEEEEEE
Confidence 9999999999999999999999999999973 344577889999999999999999999999984 789999999
Q ss_pred cCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhh
Q psy9583 781 FLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860 (866)
Q Consensus 781 ~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~ 860 (866)
+....++.+.+++.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++|+|||++|++.++++.+.
T Consensus 388 ~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~a~~~~~ 467 (492)
T 3ic9_A 388 FEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMPFYHPVIEEGLRTALRDAQ 467 (492)
T ss_dssp GGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSCCCTTCTHHHHHHHHHHHH
T ss_pred eccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCChHHHHHHHHHHHH
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred hh
Q psy9583 861 NR 862 (866)
Q Consensus 861 ~~ 862 (866)
.+
T Consensus 468 ~~ 469 (492)
T 3ic9_A 468 QK 469 (492)
T ss_dssp HT
T ss_pred HH
Confidence 53
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-67 Score=602.90 Aligned_cols=462 Identities=47% Similarity=0.800 Sum_probs=413.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
.+|||+|||||+||++||.+|++.|++|+|||++ +.+||+|.+.+|+|++.++.....++.+...+..+|++..
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~------~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~ 78 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR------GALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVS 78 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECS------SSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEES
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC------CCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 4699999999999999999999999999999997 6799999999999999988877776665443555677655
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARS 546 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~ 546 (866)
....+|..+..+.+.+.+.+...+..++++.+++++.++.++++. +.+.+.+.+| ..+.||+||+|||+.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~-----~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~ 153 (470)
T 1dxl_A 79 NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSP-----SEISVDTIEGENTVVKGKHIIIATGSDVKS 153 (470)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEET-----TEEEECCSSSCCEEEECSEEEECCCEEECC
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC-----CEEEEEeCCCceEEEEcCEEEECCCCCCCC
Confidence 556789999888888888887778888888899999999887655 6777766556 789999999999999987
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
|+.++.+...++++.++..+...+++++|||||++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|++.||
T Consensus 154 p~~~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv 233 (470)
T 1dxl_A 154 LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGM 233 (470)
T ss_dssp BTTBCCCSSSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCcccEEeHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCC
Confidence 77665555568888888888778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeC-CCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
++++++.|.+++.+++++.+.+... +|. ..++++|.|++|+|++||++++.++++|++++++|+|.||++|||++
T Consensus 234 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~----~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~ 309 (470)
T 1dxl_A 234 KFKLKTKVVGVDTSGDGVKLTVEPSAGGE----QTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNV 309 (470)
T ss_dssp CEECSEEEEEEECSSSSEEEEEEESSSCC----CEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSS
T ss_pred EEEeCCEEEEEEEcCCeEEEEEEecCCCc----ceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccCC
Confidence 9999999999987766666666521 231 23799999999999999999877788999998889999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCch
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS 785 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~ 785 (866)
|+|||+|||++.+++++.|.+||++||+||++...++++..+|+++|++|+++++|++|++|++.|+++.+..+++....
T Consensus 310 ~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~ 389 (470)
T 1dxl_A 310 SGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANS 389 (470)
T ss_dssp TTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTSCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCH
T ss_pred CCEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCcCCCCCCCCEEEECCCceEEEcCCHHHHHhcCCcEEEEEEecccch
Confidence 99999999999899999999999999999999877788889999999999999999999999999999999999999999
Q ss_pred hhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccC
Q psy9583 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865 (866)
Q Consensus 786 ~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 865 (866)
++.+.+++.+|+|+++|+++++|||+|++|+.+.|+|+.+++||++++|++||.+++++|||++|++.++++.++++.+|
T Consensus 390 ~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 469 (470)
T 1dxl_A 390 RAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIH 469 (470)
T ss_dssp HHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSCCSC
T ss_pred HHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHHHHHhcCccc
Confidence 99888888999999999989999999999999999999999999999999999999999999999999999888776665
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-66 Score=600.67 Aligned_cols=464 Identities=45% Similarity=0.779 Sum_probs=412.6
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|+.++||+|||||+||+++|..|++.|++|+|||+. +.+||+|.+.||+|++.++.....++.+...+..+|++
T Consensus 2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~------~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~ 75 (478)
T 1v59_A 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKR------GKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGID 75 (478)
T ss_dssp EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS------SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEE
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecC------CCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 445699999999999999999999999999999997 67999999999999999998888777766446667776
Q ss_pred c-cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eE------EEecEEE
Q psy9583 467 T-QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ET------ITAKYII 537 (866)
Q Consensus 467 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~------i~~d~lV 537 (866)
. ....+++..+..+...+...+...+..++++.+++++.++.++.+. +.+.+.+.+| .. +.||+||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~-----~~v~V~~~~G~~~~~~~~~~i~~d~lV 150 (478)
T 1v59_A 76 VNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDE-----TKIRVTPVDGLEGTVKEDHILDVKNII 150 (478)
T ss_dssp ECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSS-----SEEEEECCTTCTTCCSSCEEEEEEEEE
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC-----CeEEEEecCCCcccccccceEEeCEEE
Confidence 5 4456789998888888888888888888888999999999887644 6777766555 46 9999999
Q ss_pred EecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHH
Q psy9583 538 IATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKA 617 (866)
Q Consensus 538 iATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l 617 (866)
+|||+.|+.+|+.+..+..+++++++..+...+++++|||||++|+|+|..|+++|.+|+++++.+++++.+++++.+.+
T Consensus 151 iAtGs~p~~~~g~~~~~~~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l 230 (478)
T 1v59_A 151 VATGSEVTPFPGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKAT 230 (478)
T ss_dssp ECCCEEECCCTTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHH
T ss_pred ECcCCCCCCCCCCCCCCceEEcHHHHHhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHH
Confidence 99999997777765555568899998888778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCEEEeCceEEEEEE--cCCeEEEEEeeC-CCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCc
Q psy9583 618 FHLLNKQGLNIILNTKIHDIKI--NKENVLINYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNF 694 (866)
Q Consensus 618 ~~~l~~~GV~i~~~~~v~~i~~--~~~~~~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~ 694 (866)
.+.|++.||++++++.|+++.. +++.+.+.+.+. +|. ..++++|.|++|+|++|+++.+.++++|++++++|+
T Consensus 231 ~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~----~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~ 306 (478)
T 1v59_A 231 QKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNK----QENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGR 306 (478)
T ss_dssp HHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTE----EEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSC
T ss_pred HHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCC----ceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCC
Confidence 9999999999999999999987 555666666421 111 247999999999999999985447889999998999
Q ss_pred EEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcE
Q psy9583 695 IIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISY 774 (866)
Q Consensus 695 i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~ 774 (866)
|.||++|||++|+|||+|||++.+++++.|.+||++||+||++...++++..+|+++|++|+++++|++|+||++.|+++
T Consensus 307 i~vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~ 386 (478)
T 1v59_A 307 LVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPEVAWVGKTEEQLKEAGIDY 386 (478)
T ss_dssp BCCCTTSBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSEEEEEECCHHHHHHTTCCE
T ss_pred EeECcCCccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCcEEEEECCHHHHHHcCCCE
Confidence 99999999999999999999998999999999999999999987666788899999999999999999999999999999
Q ss_pred EEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHH
Q psy9583 775 NVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854 (866)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~ 854 (866)
.+..+++....++.+.+++.+|+|+++++++++|||+|++|+.+.|+|+.++++|++++|++||++++++|||++|++.+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~ 466 (478)
T 1v59_A 387 KIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKE 466 (478)
T ss_dssp EEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHH
T ss_pred EEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCCCCCCCHHHHHHH
Confidence 99999999999998888888999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccC
Q psy9583 855 AAMSIENRSIN 865 (866)
Q Consensus 855 ~~~~~~~~~~~ 865 (866)
+++.++++.+|
T Consensus 467 ~~~~~~~~~~~ 477 (478)
T 1v59_A 467 ANMAAYDKAIH 477 (478)
T ss_dssp HHHHHHSCCSC
T ss_pred HHHHHhcCcCC
Confidence 99888776665
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-66 Score=599.11 Aligned_cols=457 Identities=36% Similarity=0.573 Sum_probs=407.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
++||+|||||+||++||..|++.|++|+|||+. .+||+|.+.+|+|++.++.....++.+...+..+++. ..
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-------~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~-~~ 74 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-------YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGIS-GE 74 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEE-EC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-------CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCC-CC
Confidence 489999999999999999999999999999984 6899999999999999988877776665345566776 44
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARSF 547 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~~ 547 (866)
..++|..+..+...+...+...+...+++.+++++.++.++++. +.+.+.+.+| .++.||+||+|||+.|+.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~-----~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~ 149 (464)
T 2a8x_A 75 VTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADA-----NTLLVDLNDGGTESVTFDNAIIATGSSTRLV 149 (464)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSS-----SEEEEEETTSCCEEEEEEEEEECCCEEECCC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC-----CeEEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence 56788888888777777777777888888999999999877544 6677766666 7899999999999999877
Q ss_pred CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCE
Q psy9583 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~ 627 (866)
+.++.+.. ++++.+...+...+++++|||||++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|++.||+
T Consensus 150 ~~~g~~~~-~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~ 228 (464)
T 2a8x_A 150 PGTSLSAN-VVTYEEQILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVT 228 (464)
T ss_dssp TTCCCBTT-EECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCE
T ss_pred CCCCCCce-EEecHHHhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCE
Confidence 65554433 78888888887789999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCC
Q psy9583 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707 (866)
Q Consensus 628 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~ 707 (866)
+++++.+++++.+++.+.+.+. .+|. ..++++|.|++|+|++||++++.++++|++++++|+|.||++|||++|+
T Consensus 229 i~~~~~v~~i~~~~~~~~v~~~-~~g~----~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~ 303 (464)
T 2a8x_A 229 ILTATKVESIADGGSQVTVTVT-KDGV----AQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGH 303 (464)
T ss_dssp EECSCEEEEEEECSSCEEEEEE-SSSC----EEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTT
T ss_pred EEeCcEEEEEEEcCCeEEEEEE-cCCc----eEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCC
Confidence 9999999999987666666664 1342 2479999999999999999987778889999888999999999999999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhC-CCCC-CCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCch
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISG-QKHS-INFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANS 785 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g-~~~~-~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~ 785 (866)
|||+|||++.+++++.|.+||++||+||++ ...+ ++|..+|+++|++|+++++|++|++|++.|+++.+..+++....
T Consensus 304 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~ 383 (464)
T 2a8x_A 304 IYAIGDVNGLLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQPNVASFGLTEQQARNEGYDVVVAKFPFTANA 383 (464)
T ss_dssp EEECGGGGCSSCSHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCH
T ss_pred EEEeECcCCCccCHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEEEECCCCeEEEcCCHHHHHhcCCCEEEEEEEcchhh
Confidence 999999999899999999999999999998 6666 67888999999999999999999999999999999999999999
Q ss_pred hhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccC
Q psy9583 786 RARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865 (866)
Q Consensus 786 ~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 865 (866)
++.+.+++.+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.++++.++++.+|
T Consensus 384 ~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 463 (464)
T 2a8x_A 384 KAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECFHGLVGHMIN 463 (464)
T ss_dssp HHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCTTHHHHHHHHHHHSCCSC
T ss_pred hhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCChHHHHHHHHHHHhccccc
Confidence 99888888999999999999999999999999999999999999999999999999999999999999999888776665
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-66 Score=594.70 Aligned_cols=451 Identities=41% Similarity=0.676 Sum_probs=406.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.+|+|++.++...+.++.+.. +..+|+....
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-------~~gG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~~g~~~~~ 74 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-------NLGGVCLNVGCIPSKALISASHRYEQAKH-SEEMGIKAEN 74 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------CTTHHHHHTSHHHHHHHHHHHHHHHHHHT-CGGGTEECCS
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-------CCCCcCcCcCchhhHHHHHHHHHHHHHHH-HHhcCcccCC
Confidence 489999999999999999999999999999984 68999999999999999888777766653 5667777655
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc-eEEEecEEEEecCCCCcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~p~~~p 548 (866)
...++..++.+.+.+.+.+...+..++++.+++++.++.++++. +.+.+.+.++ .++.||+||+|||+.|..|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~-----~~v~V~~~~G~~~i~~d~lViATGs~p~~~~ 149 (455)
T 1ebd_A 75 VTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDA-----NTVRVVNGDSAQTYTFKNAIIATGSRPIELP 149 (455)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEET-----TEEEEEETTEEEEEECSEEEECCCEEECCBT
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC-----CeEEEEeCCCcEEEEeCEEEEecCCCCCCCC
Confidence 67789999888888888888888888889999999999888655 6777776666 78999999999999998776
Q ss_pred CCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEE
Q psy9583 549 GVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 628 (866)
.++.+.. ++++.+...+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|++.||++
T Consensus 150 ~~g~~~~-v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i 228 (455)
T 1ebd_A 150 NFKFSNR-ILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEV 228 (455)
T ss_dssp TBCCCSS-EECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCccce-EecHHHHhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 6554443 788888888777899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCE
Q psy9583 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNI 708 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~V 708 (866)
++++.|++++.+++++.+.+.. +|. ..++++|.|++|+|++|+++++.++.+|++++++|+|.||++|||++|+|
T Consensus 229 ~~~~~v~~i~~~~~~~~v~~~~-~g~----~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~I 303 (455)
T 1ebd_A 229 VTNALAKGAEEREDGVTVTYEA-NGE----TKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI 303 (455)
T ss_dssp EESEEEEEEEEETTEEEEEEEE-TTE----EEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred EeCCEEEEEEEeCCeEEEEEEe-CCc----eeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCE
Confidence 9999999999877666666642 221 24799999999999999999877788899998889999999999999999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhh
Q psy9583 709 YAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRAR 788 (866)
Q Consensus 709 yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~ 788 (866)
||+|||++.+++++.|..||++||+||++...++++..+|+++|++|+++++|++|++|++.|+++.+..+++....++.
T Consensus 304 ya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~ 383 (455)
T 1ebd_A 304 FAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDYVAIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRAL 383 (455)
T ss_dssp EECGGGSSSCCCHHHHHHHHHHHHHHHTSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHH
T ss_pred EEEeccCCCcccHHHHHHHHHHHHHHHcCCCccCCCCCCCEEEECCCceEEEeCCHHHHHhcCCCEEEEEEEcCcchHHh
Confidence 99999999899999999999999999999877788889999999999999999999999999999999999999999998
Q ss_pred hcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHh
Q psy9583 789 ILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI 859 (866)
Q Consensus 789 ~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~ 859 (866)
+.+++.+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.+.++++.+
T Consensus 384 ~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~ 454 (455)
T 1ebd_A 384 ALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVA 454 (455)
T ss_dssp HHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHT
T ss_pred hcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHh
Confidence 88888999999999999999999999999999999999999999999999999999999999999998765
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-66 Score=594.82 Aligned_cols=453 Identities=39% Similarity=0.673 Sum_probs=405.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
++||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.||+|++.++.....++.+.. ...+|+. ..
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~-------~~GG~~~~~g~iP~k~l~~~~~~~~~~~~-~~~~g~~-~~ 76 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAG-------EVGGVCLNVGCIPTKALLHAAETLHHLKV-AEGFGLK-AK 76 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------CTTHHHHHTSHHHHHHHHHHHHHHHHHHH-HGGGTEE-CC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC-------CCCCCCCCcChHHHHHHHHHHHHHHHHHh-HHhcCCC-CC
Confidence 599999999999999999999999999999996 49999999999999999888777766643 5667776 45
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
...+|..++.+.+.+.+.+...+..++++.+++++.++.++++. +.+.+. +.++.||+||||||++|+.||+
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~-----~~v~v~---g~~~~~d~lViATGs~p~~p~g 148 (464)
T 2eq6_A 77 PELDLKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGP-----KEVEVG---GERYGAKSLILATGSEPLELKG 148 (464)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET-----TEEEET---TEEEEEEEEEECCCEEECCBTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccC-----CEEEEc---cEEEEeCEEEEcCCCCCCCCCC
Confidence 67899999998888888888778888889999999999887655 667663 5689999999999999987764
Q ss_pred CcCCCceEecchhhhcccc-CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEE
Q psy9583 550 VKFDENLILSNKGALEMIN-VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 550 ~~~~~~~~~t~~~~~~~~~-~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 628 (866)
.+.. ..+++++++.++.. .+++++|||||++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|++.||++
T Consensus 149 i~~~-~~v~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i 227 (464)
T 2eq6_A 149 FPFG-EDVWDSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRV 227 (464)
T ss_dssp BCCS-SSEECHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCC-CcEEcHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEE
Confidence 4322 25788888888877 789999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCceEEEEEEcCCeEEEEEeeC-CCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCC
Q psy9583 629 ILNTKIHDIKINKENVLINYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~ 707 (866)
++++.|++++.+++.+.+.+... +|+ ..++++|.|++|+|++|+++++.++.+|++++++|+|.||+++||++|+
T Consensus 228 ~~~~~v~~i~~~~~~~~v~~~~~~~g~----~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~ 303 (464)
T 2eq6_A 228 RTKTKAVGYEKKKDGLHVRLEPAEGGE----GEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPG 303 (464)
T ss_dssp ECSEEEEEEEEETTEEEEEEEETTCCS----CEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTT
T ss_pred EcCCEEEEEEEeCCEEEEEEeecCCCc----eeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCC
Confidence 99999999998777776666521 132 2478999999999999999987678889999888999999999999999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhh
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRA 787 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~ 787 (866)
|||+|||++.+++++.|..||++||+||++....+++. +|++.|++|+++++|++|++|++.|+++.+..+++....++
T Consensus 304 Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~ 382 (464)
T 2eq6_A 304 VYAIGDAARPPLLAHKAMREGLIAAENAAGKDSAFDYQ-VPSVVYTSPEWAGVGLTEEEAKRAGYKVKVGKFPLAASGRA 382 (464)
T ss_dssp EEECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCCCCCC-CCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHH
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHHHhcCCCcccCCC-CCeEEECCCCEEEEeCCHHHHHhcCCCEEEEEEEcCcchhh
Confidence 99999999999999999999999999999977667788 99999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccC
Q psy9583 788 RILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865 (866)
Q Consensus 788 ~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 865 (866)
.+.+++.||+|+++|+++++|||+|++|+.+.|+|+.+++||++++|++||.+++++|||++|.+.++++.+++..+|
T Consensus 383 ~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 460 (464)
T 2eq6_A 383 LTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLSESLMEAAEAFHKQAIH 460 (464)
T ss_dssp HHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTTHHHHHHHHHHTTCCSS
T ss_pred hhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChHHHHHHHHHHHhcCccc
Confidence 888888999999999889999999999999999999999999999999999999999999999999999888776554
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-66 Score=593.83 Aligned_cols=446 Identities=26% Similarity=0.457 Sum_probs=397.6
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|+++|||+|||||+||++||.+|++.|++|+|||+. +.+||+|.+.||+|++.++......+.+.. +..
T Consensus 1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~------~~~GG~~~~~gciPsk~l~~~a~~~~~~~~-~~~---- 69 (466)
T 3l8k_A 1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPK------GELGGNCLYSGCVPSKTVREVIQTAWRLTN-IAN---- 69 (466)
T ss_dssp -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTT------SSSSHHHHHHSHHHHHHHHHHHHHHHHHHH-HHC----
T ss_pred CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEECC------CCCCCcccccCCCchHHHHHHHHHHHHHHh-ccc----
Confidence 444699999999999999999999999999999976 689999999999999999988887776554 222
Q ss_pred ccccccCHHHHHHHHHHHHHhhh--hhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceE--EEecEEEEecCC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNN--SGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKET--ITAKYIIIATGS 542 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~--i~~d~lViATGs 542 (866)
....++|..+..+.+.+.+ +. ..+..++++.+++++.++...++. +.+.+.+.++.. +.||+||+|||+
T Consensus 70 -~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~v~~~~g~v~~id~-----~~~~V~~~~g~~~~~~~d~lviAtG~ 142 (466)
T 3l8k_A 70 -VKIPLDFSTVQDRKDYVQE-LRFKQHKRNMSQYETLTFYKGYVKIKDP-----THVIVKTDEGKEIEAETRYMIIASGA 142 (466)
T ss_dssp -SCCCCCHHHHHHHHHHHHH-HHHHHHHHHHTTCTTEEEESEEEEEEET-----TEEEEEETTSCEEEEEEEEEEECCCE
T ss_pred -CCCCcCHHHHHHHHHhhee-ccccchHHHHHHhCCCEEEEeEEEEecC-----CeEEEEcCCCcEEEEecCEEEECCCC
Confidence 3346789999988888877 77 777888888999999998887776 677787777777 999999999999
Q ss_pred CCcCCCCCcCCCceEecchhhh----ccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcc-cHHHHHHH
Q psy9583 543 KARSFPGVKFDENLILSNKGAL----EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV-DEEIAKKA 617 (866)
Q Consensus 543 ~p~~~p~~~~~~~~~~t~~~~~----~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~-d~~~~~~l 617 (866)
.|..|+.++.+ .+++++++. .+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+ ++++.+.+
T Consensus 143 ~p~~p~i~G~~--~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l 220 (466)
T 3l8k_A 143 ETAKLRLPGVE--YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTL 220 (466)
T ss_dssp EECCCCCTTGG--GSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHH
T ss_pred CccCCCCCCcc--ceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHH
Confidence 99877666544 578888888 566678999999999999999999999999999999999999988 99999999
Q ss_pred HHHHHHcCCEEEeCceEEEEEEcC-CeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEE
Q psy9583 618 FHLLNKQGLNIILNTKIHDIKINK-ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFII 696 (866)
Q Consensus 618 ~~~l~~~GV~i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 696 (866)
.+.|+ |++++++.|++++.++ +++.+.+...+|+ ..++++|.|++|+|++|++. |.++.+|++++++| |.
T Consensus 221 ~~~l~---v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~----~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~ 291 (466)
T 3l8k_A 221 LSILK---LNIKFNSPVTEVKKIKDDEYEVIYSTKDGS----KKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IV 291 (466)
T ss_dssp HHHHC---CCEECSCCEEEEEEEETTEEEEEECCTTSC----CEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BC
T ss_pred HhcCE---EEEEECCEEEEEEEcCCCcEEEEEEecCCc----eEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-Ee
Confidence 98887 9999999999998876 6777766532343 34799999999999999999 66789999999999 99
Q ss_pred eCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC---CCCCCCCCccEEEEccCceeeeecCHHHHHhcCCc
Q psy9583 697 VNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ---KHSINFNALPFVIYTFPEIASVGKTEQYLKKHNIS 773 (866)
Q Consensus 697 Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~---~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~ 773 (866)
||+++||++|+|||+|||++.+++++.|..||++||+||++. ...+++..+|+++|++|+++++|+||+||++.|++
T Consensus 292 vd~~~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~~~~~~~~~a~vG~te~~a~~~g~~ 371 (466)
T 3l8k_A 292 VDETMKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMANGMPVDYVDVKSIPVTIYTIPSLSYVGILPSKARKMGIE 371 (466)
T ss_dssp CCTTCBCSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCEEECSSSCEEEEECCHHHHHHHTCC
T ss_pred ECCCccCCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCCCCCccccCCCCCcEEEECCCCeEEecCCHHHHHhCCCC
Confidence 999999999999999999998999999999999999999976 34567889999999999999999999999999999
Q ss_pred EEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHH
Q psy9583 774 YNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMK 853 (866)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~ 853 (866)
+.+..+++....++.+.+++.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~ 451 (466)
T 3l8k_A 372 IVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEIIS 451 (466)
T ss_dssp EEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHHHH
T ss_pred EEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHHHH
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhh
Q psy9583 854 EAAMSIEN 861 (866)
Q Consensus 854 ~~~~~~~~ 861 (866)
++++.+..
T Consensus 452 ~~~~~~~~ 459 (466)
T 3l8k_A 452 YTARKVIE 459 (466)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99988754
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-66 Score=591.83 Aligned_cols=443 Identities=24% Similarity=0.402 Sum_probs=399.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+|||||++|++||.+|++.|++|+|||+. .+||+|.+.||+|++.++...+....+.. +..+++....
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk~-------~~GG~~~~~gcip~k~l~~~~~~~~~~~~-~~~~g~~~~~ 76 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEEF-------RYGGTCVIRGCVPKKLYVYASQFAEHFED-AAGFGWTVGE 76 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHH-GGGGTEEECC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeCC-------CCCCcccccCchhhHHHHHHHHHHHHHHH-HHhcCcccCC
Confidence 599999999999999999999999999999994 79999999999999999988887776655 6778887666
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc-CCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR-SFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~-~~p 548 (866)
..++|..+..+.+.....+...+..++++.+++++.+...+++. +.+.+. .++..+.||++|+|||+.|. .|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~-----~~v~~~-~~~~~~~~d~lviAtG~~p~~~p~ 150 (463)
T 4dna_A 77 SRFDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGP-----NTVKLL-ASGKTVTAERIVIAVGGHPSPHDA 150 (463)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSS-----SEEEET-TTTEEEEEEEEEECCCEEECCCTT
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC-----CEEEEe-cCCeEEEeCEEEEecCCCcccCCC
Confidence 78899999999988888888888888888999999998877755 666663 35678999999999999998 665
Q ss_pred CCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEE
Q psy9583 549 GVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 628 (866)
..+.. .++++++++.+...+++++|||+|++|+|+|..+.++|.+|+++++.+++++.+++++.+.+.+.|++.||++
T Consensus 151 i~G~~--~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i 228 (463)
T 4dna_A 151 LPGHE--LCITSNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRI 228 (463)
T ss_dssp STTGG--GCBCHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred CCCcc--ccccHHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 54432 4678888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCceEEEEEEcCCe-EEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCC
Q psy9583 629 ILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~ 707 (866)
++++.|++++.++++ +.+.. ..+| ++++|.|++|+|++|++.++.++..|++++++|+|.||+++||++|+
T Consensus 229 ~~~~~v~~i~~~~~~~~~v~~-~~~g-------~i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~ 300 (463)
T 4dna_A 229 LCEDIIQSVSADADGRRVATT-MKHG-------EIVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPG 300 (463)
T ss_dssp ECSCCEEEEEECTTSCEEEEE-SSSC-------EEEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTT
T ss_pred ECCCEEEEEEEcCCCEEEEEE-cCCC-------eEEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCC
Confidence 999999999987554 44441 2244 38999999999999999988788999999999999999999999999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchh
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSR 786 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~ 786 (866)
|||+|||++.+++++.|..||++||+||++.. ...++..+|+++|++|+++++|+||+||++.|.++.+.+.++..+.+
T Consensus 301 iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vG~te~~a~~~~~~~~~~~~~~~~~~~ 380 (463)
T 4dna_A 301 IYALGDVTDRVQLTPVAIHEAMCFIETEYKNNPTSPDHDLIATAVFSQPEIGTVGITEEEAARKFQEIEVYRAEFRPMKA 380 (463)
T ss_dssp EEECSGGGSSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEEECSSSCEEEEECCHHHHHHHSSEEEEEEEEECCTTH
T ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHcCCCCcccCCCCCCEEEECCCCeEEecCCHHHHHHcCCCeEEEEEeccccch
Confidence 99999999999999999999999999999864 34578889999999999999999999999999999999999999999
Q ss_pred hhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHH
Q psy9583 787 ARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856 (866)
Q Consensus 787 ~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 856 (866)
+.+.+++.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||++++++|||++|++.+++
T Consensus 381 ~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 450 (463)
T 4dna_A 381 TLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEELVTMY 450 (463)
T ss_dssp HHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGGGTCCC
T ss_pred hhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHh
Confidence 9998889999999999999999999999999999999999999999999999999999999999998766
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-65 Score=593.15 Aligned_cols=448 Identities=27% Similarity=0.452 Sum_probs=395.8
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
.+|||+|||||+||++||..|++.|++|+|||+ ..+||+|.+.||+|++.++......+.+.. ...+++...
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~-------~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~-~~~~g~~~~ 90 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELGARAAVVES-------HKLGGTCVNVGCVPKKVMWNTAVHSEFMHD-HADYGFPSC 90 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-------SCTTHHHHHHSHHHHHHHHHHHHHHHHHTT-TTTTTSCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEec-------CCCCCcccccCccchHHHHHHHHHHHHHHH-HHhcCccCC
Confidence 469999999999999999999999999999997 479999999999999999988887766654 667787776
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC-
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF- 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~- 547 (866)
...++|..+..+.+.+.+.+...+...+++.+++++.+...+.+. ..+.+.. ++.++.||+||||||+.|..|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~-----~~~~v~~-~g~~~~~d~lviAtG~~p~~p~ 164 (478)
T 3dk9_A 91 EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSD-----PKPTIEV-SGKKYTAPHILIATGGMPSTPH 164 (478)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSC-----SSCEEEE-TTEEEECSCEEECCCEEECCCC
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeC-----CeEEEEE-CCEEEEeeEEEEccCCCCCCCC
Confidence 678899999999999998888888888999999999999888755 3333432 457899999999999999877
Q ss_pred --CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcC
Q psy9583 548 --PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625 (866)
Q Consensus 548 --p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~G 625 (866)
+.++.. .++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|++.|
T Consensus 165 ~~~i~G~~--~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~g 242 (478)
T 3dk9_A 165 ESQIPGAS--LGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAG 242 (478)
T ss_dssp TTTSTTGG--GSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCc--eeEchHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCC
Confidence 444432 4578888888888899999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeCceEEEEEEcCCe--EEEEEeeCC-CCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCC
Q psy9583 626 LNIILNTKIHDIKINKEN--VLINYSNKS-TNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE 702 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~--~~v~~~~~~-g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~ 702 (866)
|++++++.+++++.++++ +.+.+.+.+ |. .+..++++|.|++|+|++|+++.|.++.+|++++++|+|.||+++|
T Consensus 243 v~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~--~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~ 320 (478)
T 3dk9_A 243 VEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLP--VMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQN 320 (478)
T ss_dssp CEEETTEEEEEEEECSSSEEEEEEECCTTSCC--EEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCB
T ss_pred CEEEeCCEEEEEEEcCCCcEEEEEEccCCCCc--ccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcc
Confidence 999999999999876555 455554211 21 0014799999999999999999777889999999999999999999
Q ss_pred CCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC--CCCCCCCCccEEEEccCceeeeecCHHHHHhcC--CcEEEEE
Q psy9583 703 TNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ--KHSINFNALPFVIYTFPEIASVGKTEQYLKKHN--ISYNVGI 778 (866)
Q Consensus 703 Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~--~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~--~~~~~~~ 778 (866)
|++|||||+|||++.+++++.|..||++||+||++. ....++..+|+++|++|+++++|+||+||++.+ .++.+..
T Consensus 321 t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~~ 400 (478)
T 3dk9_A 321 TNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYS 400 (478)
T ss_dssp CSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEE
T ss_pred cCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEeeCCHHHHHhhCCCccEEEEE
Confidence 999999999999999999999999999999999987 345678899999999999999999999999885 5678888
Q ss_pred EecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHH
Q psy9583 779 FPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854 (866)
Q Consensus 779 ~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~ 854 (866)
.++....++...+++.||+|+++|+++++|||+|++|++|.|+|+.+++||++++|++||.+++|+|||++|+|..
T Consensus 401 ~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 476 (478)
T 3dk9_A 401 TSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT 476 (478)
T ss_dssp EEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGS
T ss_pred eecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHh
Confidence 8888888988888899999999999999999999999999999999999999999999999999999999998753
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-65 Score=590.00 Aligned_cols=456 Identities=23% Similarity=0.390 Sum_probs=403.8
Q ss_pred ccceeeecCCccHHHHHHHHHHC---CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL---GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~---g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
+|||+|||||+||++||.+|++. |++|+|||++ . +||+|.+.||+|++.++.....++.+.. +..+|++
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~------~-~GG~~~~~g~~psk~l~~~a~~~~~~~~-~~~~g~~ 73 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD------G-IGGAAVLDDCVPSKTFIASTGLRTELRR-APHLGFH 73 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS------C-TTHHHHHTSHHHHHHHHHHHHHHHHHTT-TTTTTBC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCC------C-cCCcccCcCccchHHHHHHHHHHHHHHH-HHhCCCc
Confidence 38999999999999999999999 9999999996 4 9999999999999999888777765544 5566776
Q ss_pred --ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEecccc-CcccEEEEEcCCce--EEEecEEEEecC
Q psy9583 467 --TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQ-NNFHEIQIINKTKE--TITAKYIIIATG 541 (866)
Q Consensus 467 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~-~~~~~v~v~~~~g~--~i~~d~lViATG 541 (866)
......+|..+..+.+.....+...+..++++.+++++.++...++..+ ...+.+.+.+.++. .+.||+||+|||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATG 153 (499)
T 1xdi_A 74 IDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATG 153 (499)
T ss_dssp ------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCC
T ss_pred cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCC
Confidence 3445678999998888888888888888889999999999876654310 01256777665565 799999999999
Q ss_pred CCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHH
Q psy9583 542 SKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621 (866)
Q Consensus 542 s~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l 621 (866)
+.|..|+..+.+...++++.++..+...+++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+.|
T Consensus 154 s~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l 233 (499)
T 1xdi_A 154 ASPRILPSAQPDGERILTWRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESF 233 (499)
T ss_dssp EEECCCGGGCCCSSSEEEGGGGGGCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCcCcEEehhHhhhhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH
Confidence 99987765555555688888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC
Q psy9583 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 622 ~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l 701 (866)
++.||++++++.|++++.+++++.+.+ .+|. ++++|.||+|+|++|+++++.++++|++++++|+|.||++|
T Consensus 234 ~~~GV~i~~~~~V~~i~~~~~~v~v~~--~~g~------~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~ 305 (499)
T 1xdi_A 234 AERGVRLFKNARAASVTRTGAGVLVTM--TDGR------TVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVS 305 (499)
T ss_dssp HHTTCEEETTCCEEEEEECSSSEEEEE--TTSC------EEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSS
T ss_pred HHCCCEEEeCCEEEEEEEeCCEEEEEE--CCCc------EEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCc
Confidence 999999999999999998766665544 3565 79999999999999999987778899999988999999999
Q ss_pred CCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC-CCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEe
Q psy9583 702 ETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ-KHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFP 780 (866)
Q Consensus 702 ~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~ 780 (866)
||++|+|||+|||++.+++++.|.+||++||+||+|. ...+++..+|+++|++|+++++|++|++|++.|+++.+..++
T Consensus 306 ~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~g~~~~~~~~~ 385 (499)
T 1xdi_A 306 RTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEGVSPIRLRTVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLP 385 (499)
T ss_dssp BCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEE
T ss_pred ccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEEEecCCceEeCCCHHHHHhCCCCEEEEEEe
Confidence 9999999999999999999999999999999999997 456778889999999999999999999999999999999999
Q ss_pred cCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhh
Q psy9583 781 FLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860 (866)
Q Consensus 781 ~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~ 860 (866)
+....++.+.+++.||+|+++++++++|||+|++|+.+.|+|+.+++||++++|++||.+++++|||++|.+.++++.+.
T Consensus 386 ~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~ 465 (499)
T 1xdi_A 386 LRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM 465 (499)
T ss_dssp STTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHC
T ss_pred cCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcccccCCCchHHHHHHHHHHh
Confidence 99999999888889999999998899999999999999999999999999999999999999999999999999998765
Q ss_pred h
Q psy9583 861 N 861 (866)
Q Consensus 861 ~ 861 (866)
.
T Consensus 466 ~ 466 (499)
T 1xdi_A 466 A 466 (499)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-65 Score=591.59 Aligned_cols=455 Identities=27% Similarity=0.443 Sum_probs=399.9
Q ss_pred cccccceeeecCCccHHHHHHHHHH-CCCeEEEEeccC--CCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWK--DNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEY 463 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~-~g~~V~liek~~--~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~ 463 (866)
|+++|||+|||||+||++||.+|++ .|++|+|||+.. .+..+..+||+|.+.||+|+|.++......+.+.. ...+
T Consensus 4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~-~~~~ 82 (495)
T 2wpf_A 4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRE-SAGF 82 (495)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHH-HHTT
T ss_pred cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhH-HHhc
Confidence 6556999999999999999999999 999999999210 00111578999999999999999988877766653 5667
Q ss_pred Ccccccc--ccCHHHHHHHHHHHHHhhhhhHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEc-CC-----ceEEEec
Q psy9583 464 GINTQNV--TLNLQKMLERKNNIIKKNNSGILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIIN-KT-----KETITAK 534 (866)
Q Consensus 464 gi~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~-~~-----g~~i~~d 534 (866)
++..... .++|..+..+.+.+.+.+...+...+++. +|+++.++..+++. +.+.+.. .+ ++.+.||
T Consensus 83 g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~-----~~v~v~~~~~~~~~~~~~~~~d 157 (495)
T 2wpf_A 83 GWEFDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESK-----NVVVVRETADPKSAVKERLQAD 157 (495)
T ss_dssp TEECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEET-----TEEEEESSSSTTSCEEEEEEEE
T ss_pred CcccCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeC-----CEEEEeecCCccCCCCeEEEcC
Confidence 7765545 68999999999988888888888888888 99999999887765 7777752 23 5789999
Q ss_pred EEEEecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhc---CCcEEEEecCCcCCCcccH
Q psy9583 535 YIIIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNFLNTVDE 611 (866)
Q Consensus 535 ~lViATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~---g~~Vtli~~~~~~l~~~d~ 611 (866)
+||||||+.|+.|+.++. ..++++++++.+...+++++|||+|++|+|+|..|.++ |.+|+++++.+++++.+|+
T Consensus 158 ~lViATGs~p~~p~i~G~--~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~ 235 (495)
T 2wpf_A 158 HILLATGSWPQMPAIPGI--EHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDE 235 (495)
T ss_dssp EEEECCCEEECCCCCTTG--GGCEEHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCH
T ss_pred EEEEeCCCCcCCCCCCCc--cccccHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCH
Confidence 999999999987765443 34678888888888899999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeec
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN 690 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~ 690 (866)
++.+.+.+.|+++||++++++.|++++.+++ .+.+.+. +|. ++++|.||+|+|++|+++.|.++.+|++++
T Consensus 236 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~--~G~------~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~ 307 (495)
T 2wpf_A 236 TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFE--SGK------TLDVDVVMMAIGRIPRTNDLQLGNVGVKLT 307 (495)
T ss_dssp HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEET--TSC------EEEESEEEECSCEEECCGGGTGGGTTCCBC
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEEC--CCc------EEEcCEEEECCCCcccccccchhhcCccCC
Confidence 9999999999999999999999999987654 3555554 665 799999999999999998666788999999
Q ss_pred CCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHh
Q psy9583 691 ENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKK 769 (866)
Q Consensus 691 ~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~ 769 (866)
++|+|.||+++||++|+|||+|||++.+++++.|.+||++||+||++.. ...++..+|+++|++|+++++|++|++|++
T Consensus 308 ~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~ 387 (495)
T 2wpf_A 308 PKGGVQVDEFSRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGNKPRKTDHTRVASAVFSIPPIGTCGLIEEVAAK 387 (495)
T ss_dssp TTSSBCCCTTCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEEEECCSSCEEEEECCHHHHHH
T ss_pred CCCCEEECCCCccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCEEEECCCCeEEEeCCHHHHHh
Confidence 8999999999999999999999999888999999999999999999853 446788899999999999999999999998
Q ss_pred cCCcEEEEEEecCCchhhhhcCCceEE-EEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCCh
Q psy9583 770 HNISYNVGIFPFLANSRARILGETSGM-VKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSL 848 (866)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~ 848 (866)
.+.++.+...++....++...+++.+| +|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||+
T Consensus 388 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 467 (495)
T 2wpf_A 388 EFEKVAVYMSSFTPLMHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTS 467 (495)
T ss_dssp HSSEEEEEEEEECCTHHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCS
T ss_pred cCCCEEEEEEecCchhhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCh
Confidence 888888888999988888887788999 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q psy9583 849 SEAMKEAAM 857 (866)
Q Consensus 849 ~e~~~~~~~ 857 (866)
+|++.+++.
T Consensus 468 ~e~~~~~~~ 476 (495)
T 2wpf_A 468 AEELCSMRT 476 (495)
T ss_dssp GGGGGSCCS
T ss_pred HHHHHHHHH
Confidence 999987663
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-65 Score=586.87 Aligned_cols=452 Identities=25% Similarity=0.426 Sum_probs=398.6
Q ss_pred ccceeeecCCccHHHHHHHHHH-CCCeEEEEeccCC--CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWKD--NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~-~g~~V~liek~~~--~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
+|||+|||||+||++||.+|++ .|++|+|||+... ...+..+||+|.+.||+|+|.++..+...+.+.. ...+++.
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~-~~~~g~~ 81 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRE-SAGFGWE 81 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHH-GGGGTEE
T ss_pred cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHH-HHhcCcc
Confidence 5999999999999999999999 9999999993100 0011578999999999999999988887776654 6667776
Q ss_pred cccc--ccCHHHHHHHHHHHHHhhhhhHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEc---CCc---eEEEecEEE
Q psy9583 467 TQNV--TLNLQKMLERKNNIIKKNNSGILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIIN---KTK---ETITAKYII 537 (866)
Q Consensus 467 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~---~~g---~~i~~d~lV 537 (866)
.... .++|..+..+.++....+...+...+++. +|+++.+++.+++. +.+.+.+ .++ ..+.||+||
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~-----~~v~v~~~~~~~g~~~~~~~~d~lv 156 (490)
T 1fec_A 82 LDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDN-----HTVLVRESADPNSAVLETLDTEYIL 156 (490)
T ss_dssp CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEET-----TEEEEESSSSTTSCEEEEEEEEEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeC-----CEEEEEeeccCCCCceEEEEcCEEE
Confidence 5444 67999999999988888888888888898 99999999887765 6788764 245 689999999
Q ss_pred EecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhc---CCcEEEEecCCcCCCcccHHHH
Q psy9583 538 IATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNFLNTVDEEIA 614 (866)
Q Consensus 538 iATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~---g~~Vtli~~~~~~l~~~d~~~~ 614 (866)
||||+.|..|+.++. ..++++++++.+...+++++|||+|++|+|+|..|.++ |.+|+++++.+++++.+|+++.
T Consensus 157 iAtGs~p~~p~i~g~--~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~~ 234 (490)
T 1fec_A 157 LATGSWPQHLGIEGD--DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELR 234 (490)
T ss_dssp ECCCEEECCCCSBTG--GGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHH
T ss_pred EeCCCCCCCCCCCCc--cceecHHHHhhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHHH
Confidence 999999987765443 34678888888888899999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCC
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENN 693 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G 693 (866)
+.+.+.|++.||++++++.|++++.+++ .+.+.+. +|. ++++|.||+|+|++|+++.|.++.+|++++++|
T Consensus 235 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~--~G~------~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G 306 (490)
T 1fec_A 235 KQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFE--SGA------EADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNG 306 (490)
T ss_dssp HHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEET--TSC------EEEESEEEECSCEEESCTTSCGGGGTCCBCTTS
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEC--CCc------EEEcCEEEEccCCCcCccccCchhcCccCCCCC
Confidence 9999999999999999999999987654 3555554 665 799999999999999998666788999999899
Q ss_pred cEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhcCC
Q psy9583 694 FIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKHNI 772 (866)
Q Consensus 694 ~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~ 772 (866)
+|.||++|||++|+|||+|||++.+++++.|.+||++||+||++.. ...++..+|+++|++|+++++|++|++|++.+.
T Consensus 307 ~I~Vd~~~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~~ 386 (490)
T 1fec_A 307 AIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYD 386 (490)
T ss_dssp CBCCCTTCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCEEECCSSCEEEEECCHHHHHHHCS
T ss_pred CEEECCCCccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCCCCCcCCCCCccEEEECCCCeEEEeCCHHHHHhcCC
Confidence 9999999999999999999999888999999999999999999853 446788899999999999999999999998888
Q ss_pred cEEEEEEecCCchhhhhcCCceEEE-EEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHH
Q psy9583 773 SYNVGIFPFLANSRARILGETSGMV-KILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEA 851 (866)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~g~~-kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~ 851 (866)
++.+...++....++...+++.+|+ |+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 466 (490)
T 1fec_A 387 QVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEE 466 (490)
T ss_dssp EEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred CEEEEEeecChhhhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHH
Confidence 8888888998888888777889999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy9583 852 MKEAAM 857 (866)
Q Consensus 852 ~~~~~~ 857 (866)
+.+++.
T Consensus 467 ~~~~~~ 472 (490)
T 1fec_A 467 LCSMRT 472 (490)
T ss_dssp GGSCCS
T ss_pred HHHHHH
Confidence 987664
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-65 Score=584.86 Aligned_cols=443 Identities=27% Similarity=0.461 Sum_probs=391.8
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|+++|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.||+|++.++..+.....+......+++.
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-------~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~ 73 (450)
T 1ges_A 1 MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-------ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFD 73 (450)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEE
T ss_pred CCccCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-------CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCcc
Confidence 444699999999999999999999999999999995 6899999999999999988887766665235566776
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.....++|..+..+.+.....+...+...+++.+++++.++...++. +.+.+ ++..+.||+||||||+.|..
T Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~-----~~v~~---~g~~~~~d~lviAtGs~p~~ 145 (450)
T 1ges_A 74 TTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA-----KTLEV---NGETITADHILIATGGRPSH 145 (450)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET-----TEEEE---TTEEEEEEEEEECCCEEECC
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC-----CEEEE---CCEEEEeCEEEECCCCCCCC
Confidence 55567899999999888888888888888899999999998877655 66666 45789999999999999987
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
|+.++. ..++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|++.||
T Consensus 146 p~i~g~--~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 223 (450)
T 1ges_A 146 PDIPGV--EYGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP 223 (450)
T ss_dssp CCSTTG--GGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCc--cceecHHHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCC
Confidence 664443 246788888888778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCe-EEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
++++++.|++++.++++ +.+.+. +|. ++++|.|++|+|++|+++.|.++.+|++++++|+|.||+++||++
T Consensus 224 ~i~~~~~v~~i~~~~~~~~~v~~~--~g~------~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~ 295 (450)
T 1ges_A 224 QLHTNAIPKAVVKNTDGSLTLELE--DGR------SETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNI 295 (450)
T ss_dssp EEECSCCEEEEEECTTSCEEEEET--TSC------EEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSS
T ss_pred EEEeCCEEEEEEEeCCcEEEEEEC--CCc------EEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCC
Confidence 99999999999876543 555554 665 799999999999999998765788899999899999999999999
Q ss_pred CCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CC-CCCCCccEEEEccCceeeeecCHHHHHhc-C-CcEEEEEEec
Q psy9583 706 PNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HS-INFNALPFVIYTFPEIASVGKTEQYLKKH-N-ISYNVGIFPF 781 (866)
Q Consensus 706 ~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~-~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~-~~~~~~~~~~ 781 (866)
|+|||+|||++.+++++.|.+||++||+||++.. .. .++..+|+++|++|+++++|++|++|++. | .++.+...++
T Consensus 296 ~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~~g~~~~~~~~~~~ 375 (450)
T 1ges_A 296 EGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSF 375 (450)
T ss_dssp TTEEECSGGGTSCCCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEE
T ss_pred CCEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeEEECCCceEEEeCCHHHHHhcCCCCcEEEEEEEC
Confidence 9999999999888999999999999999999854 33 57788999999999999999999999987 5 6788888888
Q ss_pred CCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHH
Q psy9583 782 LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854 (866)
Q Consensus 782 ~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~ 854 (866)
....++...+++.+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||++++++|||++|++.+
T Consensus 376 ~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 448 (450)
T 1ges_A 376 TAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVT 448 (450)
T ss_dssp ECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred chhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChHHHHHh
Confidence 8888888777789999999999999999999999999999999999999999999999999999999998864
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-65 Score=581.78 Aligned_cols=453 Identities=44% Similarity=0.737 Sum_probs=409.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
|||+|||||+||++||.+|++.|++|+|||++ +.+||+|.+.||+|++.++.....++.+.. ..+|++....
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~------~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~--~~~g~~~~~~ 73 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKE------KALGGTCLRVGCIPSKALLETTERIYEAKK--GLLGAKVKGV 73 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS------SSSSHHHHHHSHHHHHHHHHHHHHHHHHHH--CCTTEEECCE
T ss_pred CCEEEECCChhHHHHHHHHHHCCCeEEEEeCC------CCCCCccceecchhHHHHHHHHHHHHHHhh--hcCCcccCCC
Confidence 89999999999999999999999999999997 679999999999999999888777766643 5567765556
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGV 550 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~~ 550 (866)
..+|..+..+.+.+.+.+...+..++++.+++++.++.++++. +.+.+.+ ++.++.||+||+|||+.|..|+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~-----~~~~v~~-~g~~~~~d~lviAtG~~p~~~~~~ 147 (455)
T 2yqu_A 74 ELDLPALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSE-----RKVLVEE-TGEELEARYILIATGSAPLIPPWA 147 (455)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSS-----SEEEETT-TCCEEEEEEEEECCCEEECCCTTB
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC-----CeEEEee-CCEEEEecEEEECCCCCCCCCCCC
Confidence 7889999988888888887778888888899999999887655 6777865 567899999999999999887766
Q ss_pred cCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEe
Q psy9583 551 KFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIIL 630 (866)
Q Consensus 551 ~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~ 630 (866)
+.+...++++.++..+...+++++|||+|++|+|+|..|++.|.+|+++++.+++++.+++++.+.+.+.+++.||++++
T Consensus 148 g~~~~~v~~~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~ 227 (455)
T 2yqu_A 148 QVDYERVVTSTEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIRT 227 (455)
T ss_dssp CCCSSSEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCcEechHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEEE
Confidence 65555688888888877788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEE
Q psy9583 631 NTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYA 710 (866)
Q Consensus 631 ~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA 710 (866)
+++|++++.+++++.+.+. +|. ++++|.||+|+|++|+.+++.++.+|++++++|+|.||++++|+.|+|||
T Consensus 228 ~~~V~~i~~~~~~v~v~~~--~g~------~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya 299 (455)
T 2yqu_A 228 GVRVTAVVPEAKGARVELE--GGE------VLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYA 299 (455)
T ss_dssp SCCEEEEEEETTEEEEEET--TSC------EEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEE
T ss_pred CCEEEEEEEeCCEEEEEEC--CCe------EEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEE
Confidence 9999999987777666553 555 79999999999999999887678889999888999999999999999999
Q ss_pred ecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhc
Q psy9583 711 IGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARIL 790 (866)
Q Consensus 711 ~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~ 790 (866)
+|||++.+++++.|..||++||+||++....+++..+|++.|++|+++++|++++++++.|+++.+...++....++.+.
T Consensus 300 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~~G~~~~~a~~~g~~~~~~~~~~~~~~~~~~~ 379 (455)
T 2yqu_A 300 IGDVVRGPMLAHKASEEGIAAVEHMVRGFGHVDYQAIPSVVYTHPEIAAVGYTEEELKAQGIPYKVGKFPYSASGRARAM 379 (455)
T ss_dssp CGGGSSSCCCHHHHHHHHHHHHHHHHHSCCCCCGGGCCEEECSSSEEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHH
T ss_pred EecCCCCccCHHHHHHhHHHHHHHHcCCCccCCCCCCCEEEEcCCceEEEECCHHHHHHcCCCEEEEEEEcccchHHHhc
Confidence 99999999999999999999999999877667788889999999999999999999999999999999999999999888
Q ss_pred CCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccC
Q psy9583 791 GETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865 (866)
Q Consensus 791 ~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 865 (866)
+++.+|+|+++|+++++|||++++|+.+.|+|+.++++|++++|++||.+++++|||++|++.++++.++++.+|
T Consensus 380 ~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 454 (455)
T 2yqu_A 380 GETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAALAAWERPIH 454 (455)
T ss_dssp TCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHHHHHHSCCSC
T ss_pred CCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHHHHhcCccc
Confidence 888899999999989999999999999999999999999999999999999999999999999999888776665
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-65 Score=581.24 Aligned_cols=450 Identities=34% Similarity=0.594 Sum_probs=403.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhh---cCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFE---YGIN 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~---~gi~ 466 (866)
+|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.||+|+|.++...+.++.+.. +.. +|++
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~-------~~GG~~~~~g~~Psk~l~~~~~~~~~~~~-~~~~~~~g~~ 76 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-------ALGGTCLNIGCIPSKALIHVAEQFHQASR-FTEPSPLGIS 76 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHH-TTSCCTTCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEccC-------CCCCcCCCcCcHhHHHHHHHHHHHHHHhh-cccccccCcc
Confidence 489999999999999999999999999999984 79999999999999999988887776653 444 6777
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.....++|..+..+.+.+.+.+...+..++++.+|+++.++.++.+. +++.+. + ..+.||+||||||++|+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~-----~~v~v~--~-~~~~~d~lviATGs~p~~ 148 (458)
T 1lvl_A 77 VASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDG-----KQVEVD--G-QRIQCEHLLLATGSSSVE 148 (458)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEET-----TEEEET--T-EEEECSEEEECCCEEECC
T ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccC-----CEEEEe--e-EEEEeCEEEEeCCCCCCC
Confidence 66667899999999999988888888888999999999999888655 667662 3 689999999999999987
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
||+.+.+. .++++.++..+...+++++|||||++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|++.||
T Consensus 149 ~~~~~~~~-~v~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv 227 (458)
T 1lvl_A 149 LPMLPLGG-PVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI 227 (458)
T ss_dssp BTTBCCBT-TEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred CCCCCccC-cEecHHHHhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCC
Confidence 76544333 57888888888778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIP 706 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~ 706 (866)
++++++.|++++. + .+.+. ..+|. ..++++|.|++|+|++|+.+++.++.+|++++++ +|.||++|||++|
T Consensus 228 ~i~~~~~v~~i~~-~-~v~v~--~~~G~----~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~~t~~~ 298 (458)
T 1lvl_A 228 ALHLGHSVEGYEN-G-CLLAN--DGKGG----QLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERCQTSMH 298 (458)
T ss_dssp EEETTCEEEEEET-T-EEEEE--CSSSC----CCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTCBCSST
T ss_pred EEEECCEEEEEEe-C-CEEEE--ECCCc----eEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCCcCCCC
Confidence 9999999999986 3 34433 23341 2379999999999999999987678889999877 8999999999999
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchh
Q psy9583 707 NIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSR 786 (866)
Q Consensus 707 ~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~ 786 (866)
+|||+|||++.+++++.|..||++||+||++....+++..+|++.|++|+++++|+++++|++.|+++.+...++....+
T Consensus 299 ~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~p~~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~ 378 (458)
T 1lvl_A 299 NVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRFEPAAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGR 378 (458)
T ss_dssp TEEECGGGGCSSCCHHHHHHHHHHHHHHHTTCCCCCCCSCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHH
T ss_pred CEEEeeccCCCcccHHHHHHHHHHHHHHhcCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHHcCCCEEEEEEECccchh
Confidence 99999999999999999999999999999997767778889999999999999999999999999999999999988899
Q ss_pred hhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccC
Q psy9583 787 ARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865 (866)
Q Consensus 787 ~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 865 (866)
+.+.+++.||+|+++|+++++|||+|++|+.+.|+|+.++++|++++|++||.+++++|||++|.+.++++.+.++.+|
T Consensus 379 ~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e~~~~a~~~~~~~~~~ 457 (458)
T 1lvl_A 379 AMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALH 457 (458)
T ss_dssp HHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTCCSC
T ss_pred hhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHHHHHHHHHHHHhccccc
Confidence 8888888999999999999999999999999999999999999999999999999999999999999999988776665
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-64 Score=579.42 Aligned_cols=451 Identities=26% Similarity=0.431 Sum_probs=396.7
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhc-Cc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEY-GI 465 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~-gi 465 (866)
|+.++||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.||+|++.++.....+..... ...+ |+
T Consensus 1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-------~~GG~~~~~g~ip~k~l~~~~~~~~~~~~-~~~~~g~ 72 (467)
T 1zk7_A 1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-------TIGGTCVNVGCVPSKIMIRAAHIAHLRRE-SPFDGGI 72 (467)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-------STTHHHHHHSHHHHHHHHHHHHHHHHHHC-CTTTTTS
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-------CCCccccCCCccchHHHHHHHHHHHHHhh-hhhcCCc
Confidence 445699999999999999999999999999999985 68999999999999998877766544433 2333 55
Q ss_pred cccccccCHHHHHHHHHHHHHhhhh-hHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecC
Q psy9583 466 NTQNVTLNLQKMLERKNNIIKKNNS-GILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATG 541 (866)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATG 541 (866)
+......++..+..+.......+.. .+..++++. +++++.+++..++. +.+.+.+.+| ..+.||+||+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~-----~~~~v~~~~g~~~~~~~d~lviAtG 147 (467)
T 1zk7_A 73 AATVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDD-----QSLTVRLNEGGERVVMFDRCLVATG 147 (467)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEET-----TEEEEEETTSSEEEEECSEEEECCC
T ss_pred cCCCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccC-----CEEEEEeCCCceEEEEeCEEEEeCC
Confidence 5445567888888877766666553 345667777 99999998777765 6777776666 7899999999999
Q ss_pred CCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHH
Q psy9583 542 SKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621 (866)
Q Consensus 542 s~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l 621 (866)
+.|+.|+.++.+...+++++++.++...+++++|||+|++|+|+|..|.++|.+|+++++.+++++ +++++.+.+.+.|
T Consensus 148 s~p~~p~i~G~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l 226 (467)
T 1zk7_A 148 ASPAVPPIPGLKESPYWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR-EDPAIGEAVTAAF 226 (467)
T ss_dssp EEECCCCCTTTTTSCCBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-SCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCcCceecHHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-CCHHHHHHHHHHH
Confidence 999877666555556788888888888899999999999999999999999999999999999999 9999999999999
Q ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC
Q psy9583 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 622 ~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l 701 (866)
++.||++++++.|++++.+++.+.+.+. +. ++++|.||+|+|++|+++++.++..+++++++|+|.||+++
T Consensus 227 ~~~Gv~i~~~~~v~~i~~~~~~~~v~~~---~~------~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~ 297 (467)
T 1zk7_A 227 RAEGIEVLEHTQASQVAHMDGEFVLTTT---HG------ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGM 297 (467)
T ss_dssp HHTTCEEETTCCEEEEEEETTEEEEEET---TE------EEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTC
T ss_pred HhCCCEEEcCCEEEEEEEeCCEEEEEEC---Cc------EEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCc
Confidence 9999999999999999887665555442 32 78999999999999999876678889999888999999999
Q ss_pred CCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEec
Q psy9583 702 ETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPF 781 (866)
Q Consensus 702 ~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~ 781 (866)
||+.|+|||+|||++.+.+++.|..||++||.||++....+++..+|++.|++|+++++|+++++|+..|+++.+..+++
T Consensus 298 ~t~~~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~~a~vG~~~~~a~~~g~~~~~~~~~~ 377 (467)
T 1zk7_A 298 RTSNPNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGDAALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTL 377 (467)
T ss_dssp BCSSTTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTCCCCCCCTTCEEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEG
T ss_pred ccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCcccCCCCCCEEEecCCceEEEecCHHHHHhcCCCeEEEEEec
Confidence 99999999999999999999999999999999999876667788899999999999999999999999999999999999
Q ss_pred CCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhh
Q psy9583 782 LANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860 (866)
Q Consensus 782 ~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~ 860 (866)
....++...+++.+|+|+++++++++|||+|++|+++.|+|+.++++|++++|++||++++++|||++|++.++++.+.
T Consensus 378 ~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt~~e~~~~~~~~~~ 456 (467)
T 1zk7_A 378 DNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAAQTFN 456 (467)
T ss_dssp GGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTSTTHHHHHHHHTTT
T ss_pred ccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHHHHHh
Confidence 9889988877889999999999899999999999999999999999999999999999999999999999999997654
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-65 Score=588.90 Aligned_cols=444 Identities=24% Similarity=0.416 Sum_probs=402.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
.+|||+|||||+||++||.+|++.|++|+|||+. .+||+|.+.||+|++.++........+.. ...+++...
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~-------~~GG~~~~~gcip~k~l~~~a~~~~~~~~-~~~~g~~~~ 96 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEEY-------RIGGTCVIRGCVPKKLYFYASQYAQEFSK-SIGFGWKYA 96 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHH-HGGGTBCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeCC-------CCCCceeccCccccHHHHHHHHHHHHHHH-HHhCCcccC
Confidence 3699999999999999999999999999999994 79999999999999999998888776665 677888776
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc-CC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR-SF 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~-~~ 547 (866)
...++|..+..+.......+...+...+++.+++++.+...+++. +.+.+. .++..+.||++|+|||+.|. .|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~-----~~v~v~-~~~~~~~~d~lviAtG~~p~~~p 170 (484)
T 3o0h_A 97 DPIFNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDE-----HTLELS-VTGERISAEKILIATGAKIVSNS 170 (484)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET-----TEEEET-TTCCEEEEEEEEECCCEEECCC-
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC-----CEEEEe-cCCeEEEeCEEEEccCCCcccCC
Confidence 678899999999988888888888888999999999998888766 667663 24578999999999999988 66
Q ss_pred CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCE
Q psy9583 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~ 627 (866)
+..+.. .++++++++.+...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+.+.+.+++.||+
T Consensus 171 ~i~G~~--~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 248 (484)
T 3o0h_A 171 AIKGSD--LCLTSNEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGIS 248 (484)
T ss_dssp -CBTGG--GSBCTTTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCE
T ss_pred CCCCcc--ccccHHHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCE
Confidence 544432 467888888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCC
Q psy9583 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707 (866)
Q Consensus 628 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~ 707 (866)
+++++.|++++.+++++.+.+. +|. ++++|.||+|+|++|++.++.++..|++++++|+|.||+++||++|+
T Consensus 249 i~~~~~V~~i~~~~~~v~v~~~--~g~------~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~ 320 (484)
T 3o0h_A 249 IIYEATVSQVQSTENCYNVVLT--NGQ------TICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSH 320 (484)
T ss_dssp EESSCCEEEEEECSSSEEEEET--TSC------EEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTT
T ss_pred EEeCCEEEEEEeeCCEEEEEEC--CCc------EEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCC
Confidence 9999999999988777766664 665 79999999999999999988778899999999999999999999999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchh
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSR 786 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~ 786 (866)
|||+|||++.+++++.|..||++||+||++.. ...++..+|+++|++|+++++|+||+||++.|.++.+...++..+.+
T Consensus 321 Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~g~~~~~~~~~~~~~~~ 400 (484)
T 3o0h_A 321 IWAVGDVTGHIQLTPVAIHDAMCFVKNAFENTSTTPDYDLITTAVFSQPEIGTVGLSEEDALHRYKRVEIYRTVFRPMRN 400 (484)
T ss_dssp EEECGGGGTSCCCHHHHHHHHHHHHHHHHC---CCCCCTTCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHH
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEEEECCCCEEEeeCCHHHHHHcCCCEEEEEecCCcchh
Confidence 99999999989999999999999999999864 44678899999999999999999999999999999999999999999
Q ss_pred hhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHH
Q psy9583 787 ARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856 (866)
Q Consensus 787 ~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 856 (866)
+.+.+++.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+++
T Consensus 401 ~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 470 (484)
T 3o0h_A 401 VLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEELVTMY 470 (484)
T ss_dssp HHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGCCC
T ss_pred hccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHHHh
Confidence 9988889999999999999999999999999999999999999999999999999999999999998765
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-64 Score=585.33 Aligned_cols=455 Identities=27% Similarity=0.413 Sum_probs=392.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCC-Ccc-cccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD-NEE-NFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~-~~~-~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+|||+|||||+||++||.+|++.|++|+|||+.+. +++ +..+||+|.+.||+|++.++......+.... ...+|+..
T Consensus 6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~-~~~~g~~~ 84 (488)
T 3dgz_A 6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRD-AHHYGWEV 84 (488)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHH-HHHTTCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHH-HHhcCccc
Confidence 59999999999999999999999999999997321 111 3579999999999999999888877666554 67778775
Q ss_pred c-ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCC
Q psy9583 468 Q-NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKA 544 (866)
Q Consensus 468 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p 544 (866)
. ...++|..+..+.+.+...+...+...+++.+|+++.+...+++. +.+.+.+.++ .++.||+||||||+.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~-----~~v~v~~~~g~~~~~~~d~lViATGs~p 159 (488)
T 3dgz_A 85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDE-----HTVRGVDKGGKATLLSAEHIVIATGGRP 159 (488)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSS-----SEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC-----CeEEEEeCCCceEEEECCEEEEcCCCCC
Confidence 4 457899999999999999888888888999999999999988876 7888877655 6899999999999999
Q ss_pred cCCC-CCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH
Q psy9583 545 RSFP-GVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK 623 (866)
Q Consensus 545 ~~~p-~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~ 623 (866)
..|+ .++. ....+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++. .+++.+|+++.+.+.+.|++
T Consensus 160 ~~p~~i~G~-~~~~~~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~l~~~l~~ 237 (488)
T 3dgz_A 160 RYPTQVKGA-LEYGITSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLRGFDQQMSSLVTEHMES 237 (488)
T ss_dssp CCCSSCBTH-HHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCc-ccccCcHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-cccccCCHHHHHHHHHHHHH
Confidence 8776 4443 2345688888888888999999999999999999999999999999986 57889999999999999999
Q ss_pred cCCEEEeCceEEEEEEc-CCeEEEEEeeCC-CCccceeEEEeccEEEEeeccccCCCCCCccccCeeec-CCCcEEeCCC
Q psy9583 624 QGLNIILNTKIHDIKIN-KENVLINYSNKS-TNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN-ENNFIIVNDN 700 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~-~~~~~v~~~~~~-g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~~G~i~Vd~~ 700 (866)
.||++++++.+.+++.. ++.+.+.+.+.+ |+ ..++++|.|++|+|++|+++++.++..|++++ ++|+|.||++
T Consensus 238 ~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~----~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~ 313 (488)
T 3dgz_A 238 HGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGK----EDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQ 313 (488)
T ss_dssp TTCEEEETEEEEEEEECTTSCEEEEEEETTTTE----EEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTT
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCe----eEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCC
Confidence 99999999999999874 345667666432 32 33589999999999999999887889999998 7899999999
Q ss_pred CCCCCCCEEEecccC-CCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhc-C-CcEEE
Q psy9583 701 CETNIPNIYAIGDVV-RGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKH-N-ISYNV 776 (866)
Q Consensus 701 l~Ts~~~VyA~GD~a-~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~-~~~~~ 776 (866)
+||++|+|||+|||+ +.+++++.|..||++||+||++.. ...++..+|+++|++|+++++|+||+||+++ + ..+.+
T Consensus 314 ~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~ 393 (488)
T 3dgz_A 314 EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTVFTPLEYGCVGLSEEEAVALHGQEHVEV 393 (488)
T ss_dssp SBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEE
T ss_pred CccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEEECCCCeEEEeCCHHHHHhhCCCCcEEE
Confidence 999999999999998 678899999999999999999865 3457888999999999999999999999986 4 45777
Q ss_pred EEEecCCchhhhhcC-CceEEEEEEEE-CCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHH
Q psy9583 777 GIFPFLANSRARILG-ETSGMVKILSD-MKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854 (866)
Q Consensus 777 ~~~~~~~~~~~~~~~-~~~g~~kli~~-~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~ 854 (866)
...+|....++.... .+.||+|+++| +++++|||+|++|++|.|+|+.+++||++++|++||++++|+|||++|++..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~ 473 (488)
T 3dgz_A 394 YHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASYAQVMQTVGIHPTCSEEVVK 473 (488)
T ss_dssp EEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSTHHHHT
T ss_pred EEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHHHH
Confidence 776776655554333 36899999999 5899999999999999999999999999999999999999999999999987
Q ss_pred HH
Q psy9583 855 AA 856 (866)
Q Consensus 855 ~~ 856 (866)
++
T Consensus 474 ~~ 475 (488)
T 3dgz_A 474 LH 475 (488)
T ss_dssp CC
T ss_pred HH
Confidence 64
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-64 Score=588.30 Aligned_cols=459 Identities=24% Similarity=0.397 Sum_probs=394.0
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCc--ccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNE--ENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYG 464 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~--~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~g 464 (866)
|..+|||+||||||||++||.+|++.|++|+|||+.+... ....+||+|.+.||+|++.++......+.... +..+|
T Consensus 29 ~~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~-~~~~g 107 (519)
T 3qfa_A 29 KSYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQD-SRNYG 107 (519)
T ss_dssp SSCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHH-HHHTT
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHH-HHhcC
Confidence 3446999999999999999999999999999999852111 11379999999999999998888777665544 67788
Q ss_pred ccccc-cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecC
Q psy9583 465 INTQN-VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATG 541 (866)
Q Consensus 465 i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATG 541 (866)
+.... ..++|..+..+.+.+.+.+...+...+++.+|+++.+...+++. +.+.+.+.++ .++.||+||||||
T Consensus 108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~-----~~v~v~~~~g~~~~i~~d~lViATG 182 (519)
T 3qfa_A 108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGP-----HRIKATNNKGKEKIYSAERFLIATG 182 (519)
T ss_dssp BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEET-----TEEEEECTTCCCCEEEEEEEEECCC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC-----CEEEEEcCCCCEEEEECCEEEEECC
Confidence 77543 57899999999999998888888888999999999999999877 7888877555 4899999999999
Q ss_pred CCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHH
Q psy9583 542 SKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621 (866)
Q Consensus 542 s~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l 621 (866)
++|+.|+.++. ...++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++ +.+++.+|+++.+.+.+.|
T Consensus 183 s~p~~p~i~G~-~~~~~t~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~-~~~l~~~d~~~~~~~~~~l 260 (519)
T 3qfa_A 183 ERPRYLGIPGD-KEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDMANKIGEHM 260 (519)
T ss_dssp EEECCCCCTTH-HHHCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCSSTTSCHHHHHHHHHHH
T ss_pred CCcCCCCCCCc-cCceEcHHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEec-ccccccCCHHHHHHHHHHH
Confidence 99987765542 235678888888888899999999999999999999999999999998 4788999999999999999
Q ss_pred HHcCCEEEeCceEEEEEEcC----CeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeec-CCCcEE
Q psy9583 622 NKQGLNIILNTKIHDIKINK----ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN-ENNFII 696 (866)
Q Consensus 622 ~~~GV~i~~~~~v~~i~~~~----~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~~G~i~ 696 (866)
++.||++++++.++++...+ +.+.+.+...++. +...+++|.|++|+|++|++++|.++.+|++++ ++|+|.
T Consensus 261 ~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~---~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~ 337 (519)
T 3qfa_A 261 EEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSE---EIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIP 337 (519)
T ss_dssp HHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSS---CEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBC
T ss_pred HHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCc---EEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEe
Confidence 99999999999888887533 4566666544442 124678999999999999999887899999998 579999
Q ss_pred eCCCCCCCCCCEEEecccC-CCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhcC--C
Q psy9583 697 VNDNCETNIPNIYAIGDVV-RGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKHN--I 772 (866)
Q Consensus 697 Vd~~l~Ts~~~VyA~GD~a-~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~--~ 772 (866)
||+++||++|+|||+|||+ +.+++++.|..||++||+||++.. ...++..+|+++|++|+++++|+||+||++.+ .
T Consensus 338 Vd~~~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~ 417 (519)
T 3qfa_A 338 VTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVKCDYENVPTTVFTPLEYGACGLSEEKAVEKFGEE 417 (519)
T ss_dssp CCTTSBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHHCGG
T ss_pred eCCCCccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCCCCccCCCCcCcEEEECCCceEEecCCHHHHHhhCCCC
Confidence 9999999999999999998 678999999999999999999865 44578889999999999999999999999863 3
Q ss_pred cEEEEEEecCCchhhhhcC-CceEEEEEEEEC-CCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhH
Q psy9583 773 SYNVGIFPFLANSRARILG-ETSGMVKILSDM-KSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSE 850 (866)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~-~~~g~~kli~~~-~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e 850 (866)
.+.+.+.++....++.... .+.||+|+|+|+ ++++|||+|++|++|.|+|+.+++||++++|++||++++++|||++|
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~E 497 (519)
T 3qfa_A 418 NIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE 497 (519)
T ss_dssp GEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGG
T ss_pred CEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHH
Confidence 6777777776666655543 468999999997 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy9583 851 AMKEAA 856 (866)
Q Consensus 851 ~~~~~~ 856 (866)
++.+++
T Consensus 498 ~~~~~~ 503 (519)
T 3qfa_A 498 VFTTLS 503 (519)
T ss_dssp GGGGCC
T ss_pred HHHHHH
Confidence 998765
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-64 Score=582.17 Aligned_cols=446 Identities=28% Similarity=0.460 Sum_probs=389.1
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc-
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT- 467 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~- 467 (866)
++|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.||+|++.++........+.. ...+++..
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-------~~GG~~~n~gciP~k~l~~~~~~~~~~~~-~~~~g~~~~ 81 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-------ALGGTCVNVGCVPKKVMWYASDLATRVSH-ANEYGLYQN 81 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHTT-TTTTTBSTT
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-------CcCCcCcccCcHHHHHHHHHHHHHHHHHh-HHhcCcccc
Confidence 3599999999999999999999999999999995 68999999999999999887776655543 44556543
Q ss_pred ----c-ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCce--EEEecEEEEec
Q psy9583 468 ----Q-NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKE--TITAKYIIIAT 540 (866)
Q Consensus 468 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~--~i~~d~lViAT 540 (866)
. ...++|..+..+.+.+...+...+...+++.+++++.++...++. +.+.+.+.++. .+.||+||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~-----~~~~v~~~~g~~~~~~~d~lviAt 156 (479)
T 2hqm_A 82 LPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKD-----GNVEVQKRDNTTEVYSANHILVAT 156 (479)
T ss_dssp SCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTT-----SCEEEEESSSCCEEEEEEEEEECC
T ss_pred cccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC-----CEEEEEeCCCcEEEEEeCEEEEcC
Confidence 2 356789999988888888888888888889999999998776654 56777655554 89999999999
Q ss_pred CCCCcCC-CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHH
Q psy9583 541 GSKARSF-PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFH 619 (866)
Q Consensus 541 Gs~p~~~-p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~ 619 (866)
|+.|..| +.++. ..++++++++.+...+++++|||||++|+|+|..|.++|.+|+++++.+++++.+++++.+.+.+
T Consensus 157 Gs~p~~p~~i~g~--~~~~~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~ 234 (479)
T 2hqm_A 157 GGKAIFPENIPGF--ELGTDSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITD 234 (479)
T ss_dssp CEEECCCTTSTTG--GGSBCHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHH
T ss_pred CCCCCCCCCCCCc--ccccchHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHH
Confidence 9999876 54443 24577888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEeCceEEEEEEcCCe--EEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEe
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKEN--VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIV 697 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~V 697 (866)
.|++.||+++++++|++++.++++ +.+.+. +|. .++++|.|++|+|++|++ .|.++.+|++++++|+|.|
T Consensus 235 ~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~--~G~-----~~i~~D~vv~a~G~~p~~-~l~l~~~gl~~~~~G~i~v 306 (479)
T 2hqm_A 235 HYVKEGINVHKLSKIVKVEKNVETDKLKIHMN--DSK-----SIDDVDELIWTIGRKSHL-GMGSENVGIKLNSHDQIIA 306 (479)
T ss_dssp HHHHHTCEEECSCCEEEEEECC-CCCEEEEET--TSC-----EEEEESEEEECSCEEECC-CSSGGGGTCCBCTTSCBCC
T ss_pred HHHhCCeEEEeCCEEEEEEEcCCCcEEEEEEC--CCc-----EEEEcCEEEECCCCCCcc-ccChhhcCceECCCCCEeE
Confidence 999999999999999999876544 555554 551 279999999999999999 4446888999998999999
Q ss_pred CCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC----CCCCCCCccEEEEccCceeeeecCHHHHHhc-C-
Q psy9583 698 NDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK----HSINFNALPFVIYTFPEIASVGKTEQYLKKH-N- 771 (866)
Q Consensus 698 d~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~----~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~- 771 (866)
|++|||++|+|||+|||++.+.+++.|.+||++||+||++.. ...++..+|+++|++|+++++|++|++|++. +
T Consensus 307 d~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~vGl~e~~a~~~~~~ 386 (479)
T 2hqm_A 307 DEYQNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSVIFSHPEAGSIGISEKEAIEKYGK 386 (479)
T ss_dssp CTTCBCSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEEECCSSCEEEEECCHHHHHHHHCG
T ss_pred CCCCccCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeEEECCCCeEEEeCCHHHHHhcCCC
Confidence 999999999999999999888999999999999999999754 3456778999999999999999999999887 4
Q ss_pred CcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHH
Q psy9583 772 ISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEA 851 (866)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~ 851 (866)
.++.+...++....++...+++.+|+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 466 (479)
T 2hqm_A 387 ENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFDNCVAIHPTSAEE 466 (479)
T ss_dssp GGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGG
T ss_pred CcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCChHHH
Confidence 35888888999898888777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy9583 852 MKEAAM 857 (866)
Q Consensus 852 ~~~~~~ 857 (866)
+.+++.
T Consensus 467 ~~~~~~ 472 (479)
T 2hqm_A 467 LVTMRG 472 (479)
T ss_dssp GGSCC-
T ss_pred HHHHHH
Confidence 976653
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-64 Score=576.47 Aligned_cols=445 Identities=26% Similarity=0.453 Sum_probs=391.8
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|+++|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.||+|++.++........+.+ ...+++.
T Consensus 1 M~~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-------~~GG~~~~~gciP~k~l~~~a~~~~~~~~-~~~~g~~ 72 (463)
T 2r9z_A 1 MTQHFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-------ALGGTCVNVGCVPKKVMWYASHLAEAVRD-APGFGVQ 72 (463)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHH-GGGGTBC
T ss_pred CCccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-------CCCCcCcCcCchhHHHHHHHHHHHHHHhh-hhhcCcc
Confidence 445699999999999999999999999999999995 68999999999999999888777666543 5566776
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
......+|..+..+.+.+...+...+...+++.+++++.++...++. +.+.+ ++.++.||+||||||+.|..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~-----~~v~~---~g~~~~~d~lviAtGs~p~~ 144 (463)
T 2r9z_A 73 ASGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDA-----HTIEV---EGQRLSADHIVIATGGRPIV 144 (463)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET-----TEEEE---TTEEEEEEEEEECCCEEECC
T ss_pred cCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccC-----CEEEE---CCEEEEcCEEEECCCCCCCC
Confidence 55567899999999888888888888888899999999998877655 66666 45789999999999999987
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
|+.++. ..++++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++.+++++.+++++.+.+.+.|++.||
T Consensus 145 p~i~G~--~~~~~~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv 222 (463)
T 2r9z_A 145 PRLPGA--ELGITSDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGI 222 (463)
T ss_dssp CSCTTG--GGSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCc--cceecHHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCC
Confidence 665443 246788888887778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIP 706 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~ 706 (866)
++++++.|++++.+++++.+.+. +|. . ++++|.|++|+|++|+++.|.++++|++++++|+|.||+++||++|
T Consensus 223 ~i~~~~~v~~i~~~~~~~~v~~~--~G~----~-~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~ 295 (463)
T 2r9z_A 223 ETHLEFAVAALERDAQGTTLVAQ--DGT----R-LEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVP 295 (463)
T ss_dssp EEESSCCEEEEEEETTEEEEEET--TCC----E-EEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSST
T ss_pred EEEeCCEEEEEEEeCCeEEEEEe--CCc----E-EEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCC
Confidence 99999999999987666666554 553 1 6899999999999999987656888999998999999999999999
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC-CC-CCCCCccEEEEccCceeeeecCHHHHHhc-CCcEEEEEEecCC
Q psy9583 707 NIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK-HS-INFNALPFVIYTFPEIASVGKTEQYLKKH-NISYNVGIFPFLA 783 (866)
Q Consensus 707 ~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~-~~-~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~~~~~~~~~~~~~ 783 (866)
+|||+|||++.+.+++.|.+||+++|.||++.. .. .++..+|+++|++|+++++|++|++|++. |.++.+...++..
T Consensus 296 ~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~ 375 (463)
T 2r9z_A 296 GVYALGDITGRDQLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTVVFAHPPLSKVGLSEPEARERLGDVLTVYETSFTP 375 (463)
T ss_dssp TEEECGGGGTSCCCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEEECCSSCEEEEECCHHHHHHHHCSCEEEEEEEECC
T ss_pred CEEEEeecCCCcccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEEEeCCCCeEEEcCCHHHHHhcCCCCEEEEEEEccc
Confidence 999999999889999999999999999999854 33 56788999999999999999999999987 6788888888888
Q ss_pred chhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHH
Q psy9583 784 NSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856 (866)
Q Consensus 784 ~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 856 (866)
..++...+.+.+|+|+++++++++|||+|++|+++.|+|+.+++||++++|++||.+++++|||++|++.+++
T Consensus 376 ~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 448 (463)
T 2r9z_A 376 MRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAEELVTLK 448 (463)
T ss_dssp GGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGGGGGCCC
T ss_pred chhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHHHHHHHH
Confidence 8888777778999999999999999999999999999999999999999999999999999999999987654
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-64 Score=578.36 Aligned_cols=455 Identities=26% Similarity=0.401 Sum_probs=390.2
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCC-C--cccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD-N--EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~-~--~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
.+|||+|||||+||++||.+|++.|++|+|||+... + .....+||+|.+.||+|++.+.......+.... ...+|+
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~-~~~~g~ 86 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHE-AAAYGW 86 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHH-HHHTTB
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHH-HHhcCc
Confidence 359999999999999999999999999999995311 1 111258999999999999999888877665554 667777
Q ss_pred cccc-cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc-eEEEecEEEEecCCC
Q psy9583 466 NTQN-VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK-ETITAKYIIIATGSK 543 (866)
Q Consensus 466 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~ 543 (866)
.... ..++|..+..+.+.+.+.+...+...+++.+|+++.+...+.+. +.+.+.+.++ .++.||+||||||+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~-----~~v~v~~~~g~~~~~~d~lviATGs~ 161 (483)
T 3dgh_A 87 NVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDS-----HTLLAKLKSGERTITAQTFVIAVGGR 161 (483)
T ss_dssp CCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEET-----TEEEEECTTCCEEEEEEEEEECCCEE
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccC-----CEEEEEeCCCeEEEEcCEEEEeCCCC
Confidence 6543 57899999999999988888888888899999999999998877 7888877656 579999999999999
Q ss_pred CcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH
Q psy9583 544 ARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK 623 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~ 623 (866)
|..|+.++.. ...+++++++.+...+++++|||+|++|+|+|..|+++|.+|+++++ +.+++.+++++.+.+.+.|++
T Consensus 162 p~~p~i~G~~-~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~-~~~l~~~d~~~~~~l~~~l~~ 239 (483)
T 3dgh_A 162 PRYPDIPGAV-EYGITSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVR-SIVLRGFDQQMAELVAASMEE 239 (483)
T ss_dssp ECCCSSTTHH-HHCBCHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES-SCSSTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCCcc-cccCcHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeC-CCCCcccCHHHHHHHHHHHHh
Confidence 9877555432 34568888888888899999999999999999999999999999998 578889999999999999999
Q ss_pred cCCEEEeCceEEEEEEcCC-eEEEEEeeCC-CCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC
Q psy9583 624 QGLNIILNTKIHDIKINKE-NVLINYSNKS-TNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~~-~~~v~~~~~~-g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l 701 (866)
.||++++++.+++++.+++ .+.+.+.+.+ +. ..++++|.|++|+|++|+++++.++.+|+++++ |+|.||+++
T Consensus 240 ~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~----~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~ 314 (483)
T 3dgh_A 240 RGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGE----ESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQE 314 (483)
T ss_dssp TTCCEEETEEEEEEEECTTSCEEEEEEETTTCC----EEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTC
T ss_pred CCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCc----eeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCC
Confidence 9999999999999987544 4667666432 22 347899999999999999999877999999997 999999999
Q ss_pred CCCCCCEEEecccC-CCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhc-C-CcEEEE
Q psy9583 702 ETNIPNIYAIGDVV-RGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKH-N-ISYNVG 777 (866)
Q Consensus 702 ~Ts~~~VyA~GD~a-~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~-~~~~~~ 777 (866)
||++|+|||+|||+ +.+.+++.|..||++||+||+|.. ...++..+|+++|++|+++++|+||+||+++ + ..+.+.
T Consensus 315 ~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~~a~vGlte~~a~~~~~~~~~~~~ 394 (483)
T 3dgh_A 315 ATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGGSTQRMDYKDVATTVFTPLEYACVGLSEEDAVKQFGADEIEVF 394 (483)
T ss_dssp BCSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEECSSSEEEEEECCHHHHHHHHCGGGEEEE
T ss_pred ccCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEEEECCCccEEEeCCHHHHHhhCCCCCEEEE
Confidence 99999999999998 568999999999999999999865 3467888999999999999999999999986 3 357776
Q ss_pred EEecCCchhhhh-cCCceEEEEEEEECC-CCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHH
Q psy9583 778 IFPFLANSRARI-LGETSGMVKILSDMK-SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEA 855 (866)
Q Consensus 778 ~~~~~~~~~~~~-~~~~~g~~kli~~~~-~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~ 855 (866)
..++....++.. .+.+.||+|+++|++ +++|||+|++|++|.|+|+.+++||++++|++||++++|+|||++|++.++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~ 474 (483)
T 3dgh_A 395 HGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGLTINTLINTVGIHPTTAEEFTRL 474 (483)
T ss_dssp EEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGGC
T ss_pred EEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHH
Confidence 666655544322 235689999999986 899999999999999999999999999999999999999999999999765
Q ss_pred H
Q psy9583 856 A 856 (866)
Q Consensus 856 ~ 856 (866)
.
T Consensus 475 ~ 475 (483)
T 3dgh_A 475 A 475 (483)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-63 Score=573.66 Aligned_cols=441 Identities=28% Similarity=0.468 Sum_probs=376.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+|||||+||++||.+|++.|++|+|||++ .+||+|.+.||+|++.++........+.. ...+++...
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-------~~GG~c~~~gc~P~k~l~~~a~~~~~~~~-~~~~g~~~~- 72 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-------RLGGTCVNVGCVPKKIMFNAASVHDILEN-SRHYGFDTK- 72 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------STTHHHHHTSHHHHHHHHHHHHHHHHHHH-GGGGTCCCC-
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-------CcCccccccCCcchHHHHHHHHHHHHHHh-hHhcCCccC-
Confidence 389999999999999999999999999999995 58999999999999998877766655543 555676644
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEc-----------CCceEEEecEEEE
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIIN-----------KTKETITAKYIII 538 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~-----------~~g~~i~~d~lVi 538 (866)
..++|..+..+.+.....+...+...+++.+++++.++...++. +.+.+.. .++..+.||+|||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~-----~~v~v~~~~~~~~~~~~~~~~~~~~~d~lVi 147 (500)
T 1onf_A 73 FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE-----NRILIKGTKDNNNKDNGPLNEEILEGRNILI 147 (500)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC-------------------------------CBSSEEE
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC-----CEEEEEeccccccccccCCCceEEEeCEEEE
Confidence 56789999988888888888888888889999999987665543 5555532 1246799999999
Q ss_pred ecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHH
Q psy9583 539 ATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF 618 (866)
Q Consensus 539 ATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~ 618 (866)
|||+.|..|+.++. ..+++++++..+.. +++++|||||++|+|+|..|+++|.+|+++++.+++++.+|+++.+.+.
T Consensus 148 AtGs~p~~p~i~G~--~~~~~~~~~~~~~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~ 224 (500)
T 1onf_A 148 AVGNKPVFPPVKGI--ENTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLE 224 (500)
T ss_dssp CCCCCBCCCSCTTG--GGCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHH
T ss_pred CCCCCCCCCCCCCC--CcccCHHHHhccCC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHH
Confidence 99999987655443 24678888877766 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCEEEeCceEEEEEEcCC-eEEEEEeeCCCCccceeEE-EeccEEEEeeccccCCCCCCccccCeeecCCCcEE
Q psy9583 619 HLLNKQGLNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIIT-SIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFII 696 (866)
Q Consensus 619 ~~l~~~GV~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~-~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 696 (866)
+.|++.||++++++.|++++.+++ .+.+.+. +|. + +++|.|++|+|++|+++.|.++++|+++ ++|+|.
T Consensus 225 ~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~--~g~------~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~ 295 (500)
T 1onf_A 225 NDMKKNNINIVTFADVVEIKKVSDKNLSIHLS--DGR------IYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIV 295 (500)
T ss_dssp HHHHHTTCEEECSCCEEEEEESSTTCEEEEET--TSC------EEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEE
T ss_pred HHHHhCCCEEEECCEEEEEEEcCCceEEEEEC--CCc------EEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEE
Confidence 999999999999999999987643 3555554 665 4 8999999999999999866568889999 689999
Q ss_pred eCCCCCCCCCCEEEecccC----------------------------------CCCCcHHHHHHHHHHHHHHHhCCC-CC
Q psy9583 697 VNDNCETNIPNIYAIGDVV----------------------------------RGPMLAHKAEEEGIMVAEHISGQK-HS 741 (866)
Q Consensus 697 Vd~~l~Ts~~~VyA~GD~a----------------------------------~~~~~~~~A~~~g~~aa~~i~g~~-~~ 741 (866)
||+++||++|+|||+|||+ +.+++++.|.+||++||+||++.. ..
T Consensus 296 vd~~~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~ 375 (500)
T 1onf_A 296 VDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRK 375 (500)
T ss_dssp ECTTCBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCC
T ss_pred ECCCcccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999 567899999999999999999854 44
Q ss_pred CCCCCccEEEEccCceeeeecCHHHHHhc-C-CcEEEEEEecCCchhhh----hcCCceEEEEEEEECCCCcEEEEEEEC
Q psy9583 742 INFNALPFVIYTFPEIASVGKTEQYLKKH-N-ISYNVGIFPFLANSRAR----ILGETSGMVKILSDMKSDEILGIHIIG 815 (866)
Q Consensus 742 ~~~~~~p~~~~~~~~~a~vGl~e~~a~~~-~-~~~~~~~~~~~~~~~~~----~~~~~~g~~kli~~~~~~~ilG~~~~g 815 (866)
+++..+|+++|++|+++++|++|++|++. | .++.+...++....++. ..+++.+|+|+++|+++++|||+|++|
T Consensus 376 ~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g 455 (500)
T 1onf_A 376 TNYKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIG 455 (500)
T ss_dssp CCCSSCCEEECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEES
T ss_pred CCCCCCCeEEEcCcceEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEEEEC
Confidence 67788999999999999999999999987 4 68888888888888877 455678999999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHHHH
Q psy9583 816 PMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAA 856 (866)
Q Consensus 816 ~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~ 856 (866)
+++.|+|+.+++||++++|++||.+++++|||++|.+.+++
T Consensus 456 ~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 496 (500)
T 1onf_A 456 LNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ 496 (500)
T ss_dssp TTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence 99999999999999999999999999999999999998664
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-62 Score=572.84 Aligned_cols=446 Identities=20% Similarity=0.325 Sum_probs=376.8
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|..++||+|||||+||++||.+|++.|++|+|||++ ..+||+|.+.||+|++.++.....+..+.. ...+++
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~------~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~-~~~~g~- 111 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRW------PFLGGSCPHNACVPHHLFSDCAAELMLART-FSGQYW- 111 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS------SSSSCHHHHHSHHHHHHHHHHHHHHHHHHH-TTTSTT-
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC------CCCCCcccccCcCchHHHHHHHHHHHHHhh-hhhcCc-
Confidence 444699999999999999999999999999999997 559999999999999998877776655543 344443
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHH---HHH-----HhCCcEEE-EeEEEEeccccCcccEEEEEcCCceEEEecEEE
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGIL---FLF-----KKNKIKFF-HGHAIFTGKIQNNFHEIQIINKTKETITAKYII 537 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~gV~v~-~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lV 537 (866)
.......+ ...+.....+...+. .++ ++.+++++ .+.+..++. +.+.+ . +..+.||+||
T Consensus 112 ~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~-----~~v~~--~-g~~~~~d~lV 179 (523)
T 1mo9_A 112 FPDMTEKV----VGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN-----HTVEA--A-GKVFKAKNLI 179 (523)
T ss_dssp CCCCTTCC----CCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET-----TEEEE--T-TEEEEBSCEE
T ss_pred HHHHHhhh----hhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC-----CEEEE--C-CEEEEeCEEE
Confidence 11110000 001222222222223 455 77899998 777666655 66666 2 5789999999
Q ss_pred EecCCCCcCCCCCcCCCceEecchhhh-ccccCC-CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHH
Q psy9583 538 IATGSKARSFPGVKFDENLILSNKGAL-EMINVP-KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK 615 (866)
Q Consensus 538 iATGs~p~~~p~~~~~~~~~~t~~~~~-~~~~~~-~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~ 615 (866)
+|||+.|..|+..+.....+++++++. .+...+ ++++|||+|++|+|+|..|.++|.+|+++++.+++++.+++++.+
T Consensus 180 iATGs~p~~p~i~G~~~~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~ 259 (523)
T 1mo9_A 180 LAVGAGPGTLDVPGVNAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRA 259 (523)
T ss_dssp ECCCEECCCCCSTTTTSBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHH
T ss_pred ECCCCCCCCCCCCCcccCcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHH
Confidence 999999987765555555578888888 777777 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEeCceEEEEEEcCCe----EEEEEeeCCCCccceeEEEeccEEEEeeccccCCC-CCCccccCeeec
Q psy9583 616 KAFHLLNKQGLNIILNTKIHDIKINKEN----VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN-NLNIDKIGLKVN 690 (866)
Q Consensus 616 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~----~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~-~l~l~~~gl~~~ 690 (866)
.+.+.|++.||++++++.|++++.++++ +.+.+. +|. .++++|.||+|+|++|+++ + ++.+|++++
T Consensus 260 ~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~--~G~-----~~i~aD~Vv~A~G~~p~~~~~--l~~~gl~~~ 330 (523)
T 1mo9_A 260 YVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTP--NGE-----MRIETDFVFLGLGEQPRSAEL--AKILGLDLG 330 (523)
T ss_dssp HHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEET--TEE-----EEEECSCEEECCCCEECCHHH--HHHHTCCBC
T ss_pred HHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEEC--CCc-----EEEEcCEEEECcCCccCCccC--HHHcCCccC
Confidence 9999999999999999999999875444 445443 441 2789999999999999997 4 688899998
Q ss_pred CCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccCceeeeecCHHHHHhc
Q psy9583 691 ENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGKTEQYLKKH 770 (866)
Q Consensus 691 ~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~ 770 (866)
++|+|.||++|||++|+|||+|||++.+++++.|..||++||+||++...++++..+|+++|++|+++++|++|++|++.
T Consensus 331 ~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~~a~vG~~e~~a~~~ 410 (523)
T 1mo9_A 331 PKGEVLVNEYLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYEVSFLGMGEEEARAA 410 (523)
T ss_dssp TTSCBCCCTTSBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSEEEEEECCHHHHHHT
T ss_pred CCCCEEECCCCccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCceEEEeCCHHHHHhC
Confidence 89999999999999999999999999889999999999999999999776777888999999999999999999999999
Q ss_pred CCcEEEEEEecCC--------------chhhhhc--CCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCC
Q psy9583 771 NISYNVGIFPFLA--------------NSRARIL--GETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRAS 834 (866)
Q Consensus 771 ~~~~~~~~~~~~~--------------~~~~~~~--~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~ 834 (866)
|+++.+..+++.. ..++.+. +++.||+|+++|+++++|||+|++|+.+.|+|+.+++||++++|
T Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t 490 (523)
T 1mo9_A 411 GHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLT 490 (523)
T ss_dssp TCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCB
T ss_pred CCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCC
Confidence 9999999999887 7788887 77889999999999999999999999999999999999999999
Q ss_pred HHHHccc--cccCCChhHHHHHHHHHhhh
Q psy9583 835 SEDIARI--CHVHPSLSEAMKEAAMSIEN 861 (866)
Q Consensus 835 ~~~l~~~--~~~~Pt~~e~~~~~~~~~~~ 861 (866)
++||.++ +|+|||++|.+.+++....+
T Consensus 491 ~~~l~~~~~~~~~Pt~~e~~~~~~~~~~~ 519 (523)
T 1mo9_A 491 VDELGDMDELFLNPTHFIQLSRLRAGSKN 519 (523)
T ss_dssp HHHHHTSCCCSSCSCCHHHHHHHHTTCSS
T ss_pred HHHHHhCCcceECCCHHHHHHHHHHhhHh
Confidence 9999999 99999999999988866544
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-59 Score=552.36 Aligned_cols=457 Identities=25% Similarity=0.402 Sum_probs=383.1
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc-CCCc-ccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW-KDNE-ENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~-~~~~-~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
.+|||+||||||||++||.+|++.|++|+|||+. +.+. ..+.+||+|.+.||+|++.+............ ...+|+.
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~-~~~~g~~ 184 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALED-AEHFGWS 184 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHH-HHHTTCC
T ss_pred ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhh-HHhCCcc
Confidence 3599999999999999999999999999999973 2111 12358999999999999988877665554443 5566665
Q ss_pred ccc--cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCC
Q psy9583 467 TQN--VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGS 542 (866)
Q Consensus 467 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs 542 (866)
... ...+|..+..+.+..++.+...+...+++.+|+++.+...+++. +.+.+.+.+| .++.||+||||||+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~-----~~v~v~~~~g~~~~~~~d~lviAtGs 259 (598)
T 2x8g_A 185 LDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISP-----HEVQITDKNQKVSTITGNKIILATGE 259 (598)
T ss_dssp CCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEET-----TEEEEECTTCCEEEEEEEEEEECCCE
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC-----CEEEEEeCCCCeEEEEeCEEEEeCCC
Confidence 432 46789999988888888877777777888999999988887766 7777776555 57999999999999
Q ss_pred CCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHH
Q psy9583 543 KARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622 (866)
Q Consensus 543 ~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~ 622 (866)
.|+.|+.++.. ...+++++++.+...+++++|||||++|+|+|..|+++|.+|+++++. .+++.+++++.+.+.+.|+
T Consensus 260 ~p~~p~i~G~~-~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~ 337 (598)
T 2x8g_A 260 RPKYPEIPGAV-EYGITSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQMAEKVGDYME 337 (598)
T ss_dssp EECCCSSTTHH-HHCEEHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCcc-cceEcHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHHHHHHHHHHHH
Confidence 99877654422 235677777777777899999999999999999999999999999998 7788899999999999999
Q ss_pred HcCCEEEeCceEEEEEEc------C---CeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCC
Q psy9583 623 KQGLNIILNTKIHDIKIN------K---ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENN 693 (866)
Q Consensus 623 ~~GV~i~~~~~v~~i~~~------~---~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G 693 (866)
+.||++++++.+.++... + +.+.+.+...+|. ...+++|.|++|+|++||++++.++.+|++++++|
T Consensus 338 ~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~----~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G 413 (598)
T 2x8g_A 338 NHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGK----KFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNG 413 (598)
T ss_dssp HTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSC----EEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTS
T ss_pred hCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCc----EEeccCCEEEEEeCCccccCccCchhcCceECCCC
Confidence 999999999988888642 2 3455554434554 23456999999999999998876788899999899
Q ss_pred cEEeCCCCCCCCCCEEEecccC-CCCCcHHHHHHHHHHHHHHHhCCC-CCCCCCCccEEEEccCceeeeecCHHHHHhc-
Q psy9583 694 FIIVNDNCETNIPNIYAIGDVV-RGPMLAHKAEEEGIMVAEHISGQK-HSINFNALPFVIYTFPEIASVGKTEQYLKKH- 770 (866)
Q Consensus 694 ~i~Vd~~l~Ts~~~VyA~GD~a-~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~- 770 (866)
+|.||+++||++|+|||+|||+ +.+.+++.|.+||++||+||++.. ...++..+|+++|++|+++++|++|++|++.
T Consensus 414 ~i~vd~~~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~~~~~~~a~vGl~e~~a~~~~ 493 (598)
T 2x8g_A 414 RVVCTDDEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAGATELTDYSNVATTVFTPLEYGACGLSEEDAIEKY 493 (598)
T ss_dssp CBCCCTTSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEECSSSCEEEEECCHHHHHHHH
T ss_pred cEEeCCCCcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEEECCCceEEEeCCHHHHHhhC
Confidence 9999999999999999999995 457899999999999999999754 4456788999999999999999999999876
Q ss_pred C-CcEEEEEEecCCchhhhhcCC-ceEEEEEEEEC-CCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCC
Q psy9583 771 N-ISYNVGIFPFLANSRARILGE-TSGMVKILSDM-KSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPS 847 (866)
Q Consensus 771 ~-~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~~~-~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt 847 (866)
+ .++.+...++....++...++ ..+|+|+++++ ++++|||+|++|+++.|+|+.+++||++++|++||++++++|||
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt 573 (598)
T 2x8g_A 494 GDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGYAVAIKMGATKADFDRTIGIHPT 573 (598)
T ss_dssp CGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSC
T ss_pred CCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCC
Confidence 4 358888888887777766543 68999999995 68999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHH
Q psy9583 848 LSEAMKEAAM 857 (866)
Q Consensus 848 ~~e~~~~~~~ 857 (866)
++|++.++++
T Consensus 574 ~~e~~~~~~~ 583 (598)
T 2x8g_A 574 CSETFTTLHV 583 (598)
T ss_dssp SGGGGGSCCC
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-56 Score=509.28 Aligned_cols=406 Identities=21% Similarity=0.298 Sum_probs=316.0
Q ss_pred ceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccC-CCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFAL-GGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~-GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
+|||||||+||++||.+|++.| .+|+|||+++ .. ++.| |+|+.. .. .....
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~------~~~~~~~----~l~~~~---------------~~-~~~~~ 55 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDR------DMSFANC----ALPYVI---------------GE-VVEDR 55 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSS------CSSBCGG----GHHHHH---------------TT-SSCCG
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCC------CCCCCcc----hhHHHH---------------cC-Cccch
Confidence 6999999999999999999988 5699999973 22 2222 333110 00 00000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc---CCceEEEecEEEEecCCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN---KTKETITAKYIIIATGSKA 544 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~---~~g~~i~~d~lViATGs~p 544 (866)
...+ ....+.++++.+++++.+..+. ++. ..+.+.+.. .++..+.||+||||||++|
T Consensus 56 ~~~~----------------~~~~~~~~~~~~i~~~~~~~V~~id~---~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p 116 (437)
T 4eqs_A 56 RYAL----------------AYTPEKFYDRKQITVKTYHEVIAIND---ERQTVSVLNRKTNEQFEESYDKLILSPGASA 116 (437)
T ss_dssp GGTB----------------CCCHHHHHHHHCCEEEETEEEEEEET---TTTEEEEEETTTTEEEEEECSEEEECCCEEE
T ss_pred hhhh----------------hcCHHHHHHhcCCEEEeCCeEEEEEc---cCcEEEEEeccCCceEEEEcCEEEECCCCcc
Confidence 0000 0011334566799998887665 443 445666543 2236789999999999999
Q ss_pred cCCCCCcCCCceEecchhhhccc-----cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHH
Q psy9583 545 RSFPGVKFDENLILSNKGALEMI-----NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFH 619 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~~~~~~~~-----~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~ 619 (866)
+.|+..+.....+.+..++..+. ..+++++|||||++|+|+|..++++|.+|+++++.+++++.+|+++.+.+.+
T Consensus 117 ~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~ 196 (437)
T 4eqs_A 117 NSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILD 196 (437)
T ss_dssp CCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHH
T ss_pred ccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHH
Confidence 87654432111122334443332 2478999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND 699 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~ 699 (866)
.|+++||++++++.|++++.+ . +.+. +|+ ++++|.|++|+|++||+++ ++..|++++++|+|.||+
T Consensus 197 ~l~~~gV~i~~~~~v~~~~~~--~--v~~~--~g~------~~~~D~vl~a~G~~Pn~~~--~~~~gl~~~~~G~I~vd~ 262 (437)
T 4eqs_A 197 ELDKREIPYRLNEEINAINGN--E--ITFK--SGK------VEHYDMIIEGVGTHPNSKF--IESSNIKLDRKGFIPVND 262 (437)
T ss_dssp HHHHTTCCEEESCCEEEEETT--E--EEET--TSC------EEECSEEEECCCEEESCGG--GTTSSCCCCTTSCEECCT
T ss_pred HhhccceEEEeccEEEEecCC--e--eeec--CCe------EEeeeeEEEEeceecCcHH--HHhhhhhhccCCcEecCC
Confidence 999999999999999988643 2 4443 666 8999999999999999987 688899999999999999
Q ss_pred CCCCCCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCC-C-CCCCCccEEEEccCceeeeecCHHHH
Q psy9583 700 NCETNIPNIYAIGDVVRG----------PMLAHKAEEEGIMVAEHISGQKH-S-INFNALPFVIYTFPEIASVGKTEQYL 767 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~~----------~~~~~~A~~~g~~aa~~i~g~~~-~-~~~~~~p~~~~~~~~~a~vGl~e~~a 767 (866)
+|||++|||||+|||++. +++++.|.+||+++|+||+|... . .++...|.+.|++|+++++|+||+||
T Consensus 263 ~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~ia~vGlte~~a 342 (437)
T 4eqs_A 263 KFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNEL 342 (437)
T ss_dssp TCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEEEEEEESCGGGG
T ss_pred CccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHHHcCCCCcccccceeEEeeeeccceEEEeeCCHHHH
Confidence 999999999999999863 35799999999999999998754 2 24566788999999999999999999
Q ss_pred HhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHcccccc-C
Q psy9583 768 KKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIARICHV-H 845 (866)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~-a~eli~~~~~~i~~~~~~~~l~~~~~~-~ 845 (866)
++.++++ ..+++....+. +.+++.||+|+++|+++++|||+|++|++ |.|+|+.+++||++++|++||+++.++ |
T Consensus 343 ~~~~~~~--~~~~~~~~~~~-~~~~~~g~~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yh 419 (437)
T 4eqs_A 343 KQFDYKM--VEVTQGAHANY-YPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFA 419 (437)
T ss_dssp GGSCEEE--EEEEEESSCTT-SSSCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCC
T ss_pred HhCCceE--EEEecCCchhh-cCCCCcEEEEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccC
Confidence 9877554 44444443332 34678999999999999999999999985 899999999999999999999999665 8
Q ss_pred CChhHH---HHHHHHHh
Q psy9583 846 PSLSEA---MKEAAMSI 859 (866)
Q Consensus 846 Pt~~e~---~~~~~~~~ 859 (866)
|+++++ ++.+++++
T Consensus 420 P~~s~~~d~v~~aa~~A 436 (437)
T 4eqs_A 420 PPYSHPKDLINMIGYKA 436 (437)
T ss_dssp TTTCCSSCHHHHHHHTT
T ss_pred CCCCchHHHHHHHHHhc
Confidence 999976 55666554
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-55 Score=501.50 Aligned_cols=412 Identities=20% Similarity=0.243 Sum_probs=328.6
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
+||+|||||+||++||.+|++. |.+|+|||++ +.+| +.|.............
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~------~~~g-------~~~~~~~~~~~~~~~~------------- 56 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQ------ATVG-------YLSGGLSAYFNHTINE------------- 56 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSS------SCCS-------SCCC-------------------------
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECC------CCCc-------ccCccchhhhcCCCCC-------------
Confidence 6899999999999999999998 8999999997 3333 1221111100000000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEE-cCCceEEEecEEEEecCCCCcC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQII-NKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~-~~~g~~i~~d~lViATGs~p~~ 546 (866)
+ ..+......++++.+++++.+..+. ++. ..+.+.+. ..++..+.||+||||||+.|..
T Consensus 57 -----~-----------~~~~~~~~~~~~~~gi~~~~~~~V~~id~---~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~ 117 (452)
T 3oc4_A 57 -----L-----------HEARYITEEELRRQKIQLLLNREVVAMDV---ENQLIAWTRKEEQQWYSYDKLILATGASQFS 117 (452)
T ss_dssp --------------------CCCCHHHHHHTTEEEECSCEEEEEET---TTTEEEEEETTEEEEEECSEEEECCCCCBCC
T ss_pred -----H-----------HHhhcCCHHHHHHCCCEEEECCEEEEEEC---CCCEEEEEecCceEEEEcCEEEECCCcccCC
Confidence 0 0000112234567899998766655 433 44666664 2345789999999999999998
Q ss_pred CCCCcCCCceEecchhh------hccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-ccHHHHHHHHH
Q psy9583 547 FPGVKFDENLILSNKGA------LEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFH 619 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~------~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~ 619 (866)
|+.++.+...+++..++ ......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +|+++.+.+.+
T Consensus 118 p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~ 197 (452)
T 3oc4_A 118 TQIRGSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQK 197 (452)
T ss_dssp CCCBTTTCTTEEEGGGCC----CCHHHHTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHH
T ss_pred CCCCCCCCCCEEEeCCHHHHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHH
Confidence 77666555566665433 223346899999999999999999999999999999999999985 89999999999
Q ss_pred HHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND 699 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~ 699 (866)
.|++.||++++++.|++++..++++.+.+. ++ ++++|.|++|+|++|+++++ +.. ++++++|+|.||+
T Consensus 198 ~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~--~g-------~i~aD~Vv~A~G~~p~~~~l--~~~-~~~~~~g~i~vd~ 265 (452)
T 3oc4_A 198 SLEKQAVIFHFEETVLGIEETANGIVLETS--EQ-------EISCDSGIFALNLHPQLAYL--DKK-IQRNLDQTIAVDA 265 (452)
T ss_dssp HHHTTTEEEEETCCEEEEEECSSCEEEEES--SC-------EEEESEEEECSCCBCCCSSC--CTT-SCBCTTSCBCCCT
T ss_pred HHHHcCCEEEeCCEEEEEEccCCeEEEEEC--CC-------EEEeCEEEECcCCCCChHHH--Hhh-hccCCCCCEEECc
Confidence 999999999999999999976666655442 32 68999999999999999874 443 8888899999999
Q ss_pred CCCCCCCCEEEecccCCCC----------CcHHHHHHHHHHHHHHHhCCCCCC--CCCCccEEEEccCceeeeecCHHHH
Q psy9583 700 NCETNIPNIYAIGDVVRGP----------MLAHKAEEEGIMVAEHISGQKHSI--NFNALPFVIYTFPEIASVGKTEQYL 767 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~~~----------~~~~~A~~~g~~aa~~i~g~~~~~--~~~~~p~~~~~~~~~a~vGl~e~~a 767 (866)
+|||++|+|||+|||++.+ ++++.|..||++||+||++....+ .+..+|+.+| +++++++|+||+||
T Consensus 266 ~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~-~~~~a~vG~te~~a 344 (452)
T 3oc4_A 266 YLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRTGLVVANNLEEKTHRFIGSLRTMGTKVG-DYYLASTGLTETEG 344 (452)
T ss_dssp TCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHHHHHHTTSSSSCCCCCCCCCCCEEEEET-TEEEEEEECCSGGG
T ss_pred CccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCccccEEEEEc-CeeEEEecCCHHHH
Confidence 9999999999999999753 689999999999999999876544 3566777777 57999999999999
Q ss_pred HhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECC-ChHHHHHHHHHHHHCCCCHHHHccc-cccC
Q psy9583 768 KKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGP-MASELIAEAVIAIEFRASSEDIARI-CHVH 845 (866)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~-~a~eli~~~~~~i~~~~~~~~l~~~-~~~~ 845 (866)
++.|+++.+..+++.. ++ +.+++.||+|+++|+++++|||+|++|+ +|.|+|+.+++||++++|++||+++ +++|
T Consensus 345 ~~~g~~~~~~~~~~~~--~~-~~~~~~~~~kli~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~ 421 (452)
T 3oc4_A 345 LFFPQTLASIIVRQPA--PP-LQHGTEILGKLIYDKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQ 421 (452)
T ss_dssp GGSSSCEEEEEEEEEC--TT-TTCSCEEEEEEEEETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCC
T ss_pred HHCCCceEEEEEecCC--cc-CCCCCeEEEEEEEECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccC
Confidence 9999999998877644 33 4466789999999999999999999999 7999999999999999999999999 7899
Q ss_pred CChhH---HHHHHHHHhhhhc
Q psy9583 846 PSLSE---AMKEAAMSIENRS 863 (866)
Q Consensus 846 Pt~~e---~~~~~~~~~~~~~ 863 (866)
||++| .++.|++.++.+.
T Consensus 422 P~~~~~~~~~~~a~~~~~~~~ 442 (452)
T 3oc4_A 422 PSLTNIYDITNLMGASAYWRE 442 (452)
T ss_dssp TTTSCSSCHHHHHHHHHHHHT
T ss_pred CCCCCchhHHHHHHHHHHHhh
Confidence 99999 4678887776543
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=491.86 Aligned_cols=422 Identities=21% Similarity=0.238 Sum_probs=307.4
Q ss_pred ccceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceecc-ccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGC-IPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~-~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
++||+|||||+||++||..|++. |++|+|||+++ .++. ..| +|... ... +.
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~------~~~~----~~~gl~~~~----~g~------------~~ 56 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQAS------RISY----GGCGIPYYV----SGE------------VS 56 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCC------cccc----cccccchhh----cCC------------CC
Confidence 37999999999999999999998 89999999973 2210 000 11100 000 00
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCc--eEEEecEEEEecCC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTK--ETITAKYIIIATGS 542 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g--~~i~~d~lViATGs 542 (866)
+...+.... ..+......+.++.+++++.+..+. ++. ..+.+.+.. .++ ..+.||+||+|||+
T Consensus 57 ------~~~~~~~~~----~~~~~~~~~~~~~~gi~~~~~~~V~~id~---~~~~v~~~~~~~g~~~~~~~d~lviAtG~ 123 (472)
T 3iwa_A 57 ------NIESLQATP----YNVVRDPEFFRINKDVEALVETRAHAIDR---AAHTVEIENLRTGERRTLKYDKLVLALGS 123 (472)
T ss_dssp ----------------------------------CEEECSEEEEEEET---TTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred ------chHHhcccc----chhccCHHHHhhhcCcEEEECCEEEEEEC---CCCEEEEeecCCCCEEEEECCEEEEeCCC
Confidence 000000000 0001112233345789988776665 433 556777764 223 48999999999999
Q ss_pred CCcCCCCCcCCCceEe---cchhhhccc-----cCCCeEEEECCcHHHHHHHHHHHhc-CCcEEEEecCCcCCC-cccHH
Q psy9583 543 KARSFPGVKFDENLIL---SNKGALEMI-----NVPKKLCIIGAGVIGLEIGSIWRRL-GSEVTILEMSSNFLN-TVDEE 612 (866)
Q Consensus 543 ~p~~~p~~~~~~~~~~---t~~~~~~~~-----~~~~~vvVIGgG~~glE~A~~l~~~-g~~Vtli~~~~~~l~-~~d~~ 612 (866)
.|..|+.++.+...++ +..+...+. ..+++++|||+|++|+|+|..|.++ |.+|+++++.+++++ .++++
T Consensus 124 ~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~ 203 (472)
T 3iwa_A 124 KANRPPVEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKS 203 (472)
T ss_dssp EECCCSCTTTTSBTEEECCSHHHHHHHHHHCCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHH
T ss_pred CcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHH
Confidence 9887665544333333 333444333 3579999999999999999999999 999999999999998 89999
Q ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCC
Q psy9583 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNEN 692 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~ 692 (866)
+.+.+.+.+++.||++++++.|++++.+++.+.+.+. +|+ ++++|.||+|+|++|++++ ++.+|++++++
T Consensus 204 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~--~g~------~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~~~ 273 (472)
T 3iwa_A 204 LSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVIT--DKR------TLDADLVILAAGVSPNTQL--ARDAGLELDPR 273 (472)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEE--SSC------EEECSEEEECSCEEECCHH--HHHHTCCBCTT
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEe--CCC------EEEcCEEEECCCCCcCHHH--HHhCCccCCCC
Confidence 9999999999999999999999999986667666664 565 8999999999999999986 57789999989
Q ss_pred CcEEeCCCCCCCCCCEEEecccC-------CC---CCcHHHHHHHHHHHHHHHhCCCCCCCC-CCccEEEEccCceeeee
Q psy9583 693 NFIIVNDNCETNIPNIYAIGDVV-------RG---PMLAHKAEEEGIMVAEHISGQKHSINF-NALPFVIYTFPEIASVG 761 (866)
Q Consensus 693 G~i~Vd~~l~Ts~~~VyA~GD~a-------~~---~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~p~~~~~~~~~a~vG 761 (866)
|+|.||+++||++|+|||+|||+ +. +++++.|.+||++||+||+|....+.. ...+++.|++|+++++|
T Consensus 274 g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~a~vG 353 (472)
T 3iwa_A 274 GAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFPLGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGSASGAG 353 (472)
T ss_dssp CCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCCCTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCEEEEEE
T ss_pred CCEEECCCcccCCCCEEEeccceecccccCCceeecchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCceeEEEE
Confidence 99999999999999999999998 32 358999999999999999997755422 22334568899999999
Q ss_pred cCHHHHHhcCCcEEEEEEecCCchhhhhc-CCceEEEEEEEECCCCcEEEEEEECC---ChHHHHHHHHHHHHCCCCHHH
Q psy9583 762 KTEQYLKKHNISYNVGIFPFLANSRARIL-GETSGMVKILSDMKSDEILGIHIIGP---MASELIAEAVIAIEFRASSED 837 (866)
Q Consensus 762 l~e~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~kli~~~~~~~ilG~~~~g~---~a~eli~~~~~~i~~~~~~~~ 837 (866)
++|+||++.|+++.+..+. ...++.++ +++.||+|+++|+++++|||+|++|+ .+.|+|+.+++||++++|++|
T Consensus 354 ~~e~~a~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~ 431 (472)
T 3iwa_A 354 LTVEGALREGYDAVNVHVE--QFDRAHFYPEKTIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVED 431 (472)
T ss_dssp CCHHHHHHTTCCEEEEEEE--C-----------CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHH
T ss_pred CCHHHHHHcCCceEEEEEe--cCCccCccCCCceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999887664 55677766 77899999999999999999999999 458999999999999999999
Q ss_pred HccccccC-CChhHHH---HHHHHHhhhh
Q psy9583 838 IARICHVH-PSLSEAM---KEAAMSIENR 862 (866)
Q Consensus 838 l~~~~~~~-Pt~~e~~---~~~~~~~~~~ 862 (866)
|++++++| ||++|++ +.+++.+.+.
T Consensus 432 l~~~~~~~~P~~~~~~~~~~~~~~~~~~~ 460 (472)
T 3iwa_A 432 ISNAEVVYSPPFASAMDIVNVAGNVADNV 460 (472)
T ss_dssp HHTCCCC--------CCHHHHHHHHHHHH
T ss_pred HhcccccCCCCCCCcccHHHHHHHHHHHh
Confidence 99999998 9999985 4666666543
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-53 Score=488.65 Aligned_cols=410 Identities=19% Similarity=0.261 Sum_probs=322.3
Q ss_pred ccceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
++||+|||||+||++||..|++. |++|+|||++ +.+++.. .++|... . +.
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~------~~~~~~~---~~~p~~~---------------~--~~-- 54 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEAT------EWVSHAP---CGIPYVV---------------E--GL-- 54 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSS------SCCC-----------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECC------CccccCC---cCCcccc---------------C--CC--
Confidence 48999999999999999999998 7899999997 3332110 0111100 0 00
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc-eEEEecEEEEecCCCCc
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKAR 545 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~p~ 545 (866)
.+...+..+ ....+.++.+++++.++.+. ++. ....+...++ ..+.||+||+|||+.|+
T Consensus 55 ----~~~~~~~~~----------~~~~~~~~~gi~v~~~~~v~~i~~-----~~~~v~~~~g~~~~~~d~lviAtG~~p~ 115 (449)
T 3kd9_A 55 ----STPDKLMYY----------PPEVFIKKRGIDLHLNAEVIEVDT-----GYVRVRENGGEKSYEWDYLVFANGASPQ 115 (449)
T ss_dssp -------------------------CTHHHHTTCEEETTCEEEEECS-----SEEEEECSSSEEEEECSEEEECCCEEEC
T ss_pred ----CCHHHhhhc----------CHHHHHHhcCcEEEecCEEEEEec-----CCCEEEECCceEEEEcCEEEECCCCCCC
Confidence 000011100 01123367899999985444 554 4455655666 58999999999999998
Q ss_pred CCCCCcCCCceEec---chhhhcccc-----CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-ccHHHHHH
Q psy9583 546 SFPGVKFDENLILS---NKGALEMIN-----VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKK 616 (866)
Q Consensus 546 ~~p~~~~~~~~~~t---~~~~~~~~~-----~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~ 616 (866)
.|+.++.+...+++ ..+...+.. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.
T Consensus 116 ~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~ 195 (449)
T 3kd9_A 116 VPAIEGVNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDI 195 (449)
T ss_dssp CCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHH
T ss_pred CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHH
Confidence 77655544444443 334433322 5689999999999999999999999999999999999987 99999999
Q ss_pred HHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEE
Q psy9583 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFII 696 (866)
Q Consensus 617 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 696 (866)
+.+.|++. |++++++.+.+++.++ .+..... ++. ++++|.|++|+|++|++++ ++.+|++++++|+|.
T Consensus 196 l~~~l~~~-v~i~~~~~v~~i~~~~-~v~~v~~--~g~------~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~~~G~i~ 263 (449)
T 3kd9_A 196 LEEKLKKH-VNLRLQEITMKIEGEE-RVEKVVT--DAG------EYKAELVILATGIKPNIEL--AKQLGVRIGETGAIW 263 (449)
T ss_dssp HHHHHTTT-SEEEESCCEEEEECSS-SCCEEEE--TTE------EEECSEEEECSCEEECCHH--HHHTTCCBCTTSSBC
T ss_pred HHHHHHhC-cEEEeCCeEEEEeccC-cEEEEEe--CCC------EEECCEEEEeeCCccCHHH--HHhCCccCCCCCCEE
Confidence 99999999 9999999999998654 3322232 444 7999999999999999987 688899999999999
Q ss_pred eCCCCCCCCCCEEEecccCC-------C---CCcHHHHHHHHHHHHHHHhCCCCCCCC-CCccEEEEccCceeeeecCHH
Q psy9583 697 VNDNCETNIPNIYAIGDVVR-------G---PMLAHKAEEEGIMVAEHISGQKHSINF-NALPFVIYTFPEIASVGKTEQ 765 (866)
Q Consensus 697 Vd~~l~Ts~~~VyA~GD~a~-------~---~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~p~~~~~~~~~a~vGl~e~ 765 (866)
||+++||++|+|||+|||+. . +++++.|..||++||+||+|....++. ...|++.|++|+++++|++|+
T Consensus 264 vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~e~ 343 (449)
T 3kd9_A 264 TNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEM 343 (449)
T ss_dssp CCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCHH
T ss_pred ECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHHHHHHHHHHHHhcCCCccCCCcccceEEEEcCcEEEEecCCHH
Confidence 99999999999999999984 2 579999999999999999998765533 456889999999999999999
Q ss_pred HHHhcCCcEEEEEEecCCchhhhhc-CCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccc-cc
Q psy9583 766 YLKKHNISYNVGIFPFLANSRARIL-GETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARI-CH 843 (866)
Q Consensus 766 ~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~-~~ 843 (866)
||++.|+++.+..++ ...++.+. +++.||+|+++|+++++|||+|++|+++.|+|+.+++||++++|++||.++ ++
T Consensus 344 ~a~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~ 421 (449)
T 3kd9_A 344 EALKEGYDVRTAFIK--ASTRPHYYPGGREIWLKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLA 421 (449)
T ss_dssp HHHHTTCCEEEEEEE--EESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCC
T ss_pred HHHHCCCceEEEEEe--cCCccccCCCCceEEEEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccc
Confidence 999999999887765 44555555 667899999999999999999999999999999999999999999999998 56
Q ss_pred cCCChhHHH---HHHHHHhh
Q psy9583 844 VHPSLSEAM---KEAAMSIE 860 (866)
Q Consensus 844 ~~Pt~~e~~---~~~~~~~~ 860 (866)
+||++++++ +.|++.+.
T Consensus 422 ~~p~~~~~~~~~~~~~~~~~ 441 (449)
T 3kd9_A 422 YAPPFAPVWDPLIVLARVLK 441 (449)
T ss_dssp CBTTTBCSSCHHHHHHHHHH
T ss_pred cCCCCCCchhHHHHHHHHHh
Confidence 799999874 45665554
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-52 Score=479.60 Aligned_cols=416 Identities=17% Similarity=0.201 Sum_probs=326.3
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
+||+|||||+||++||.+|++. |.+|+|||+++ .++. .+| ... ..... .+.
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~------~~~~----~~~---~~~-------~~~~g-----~~~-- 53 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMND------NISF----LSC---GIA-------LYLGK-----EIK-- 53 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSS------CCCB----CGG---GHH-------HHHTT-----CBG--
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC------CCCc----ccc---cch-------hhhcC-----Ccc--
Confidence 5899999999999999999998 99999999972 2221 111 000 00000 000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-C--CceEEEecEEEEecCCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-K--TKETITAKYIIIATGSKA 544 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~--~g~~i~~d~lViATGs~p 544 (866)
..++.. +...+..++++.+++++.+..+. ++. ..+.+.+.+ . .+.++.||+||+|||++|
T Consensus 54 --~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~~i~~---~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p 117 (452)
T 2cdu_A 54 --NNDPRG-----------LFYSSPEELSNLGANVQMRHQVTNVDP---ETKTIKVKDLITNEEKTEAYDKLIMTTGSKP 117 (452)
T ss_dssp --GGCGGG-----------GBSCCHHHHHHTTCEEEESEEEEEEEG---GGTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred --cCCHHH-----------hhhcCHHHHHHcCCEEEeCCEEEEEEc---CCCEEEEEecCCCceEEEECCEEEEccCCCc
Confidence 001111 01112334567899998887655 443 346777754 1 146799999999999999
Q ss_pred cCCCCCcCCCceEecc------hhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHH
Q psy9583 545 RSFPGVKFDENLILSN------KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKA 617 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~------~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l 617 (866)
+.|+.++.+...+++. .++......+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+
T Consensus 118 ~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l 197 (452)
T 2cdu_A 118 TVPPIPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDIL 197 (452)
T ss_dssp CCCCCTTTTSTTEEECSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHH
T ss_pred CCCCCCCCCCCCEEEeCcHHHHHHHHHHhccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHH
Confidence 8776555443445533 23333445689999999999999999999999999999999999998 7999999999
Q ss_pred HHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEe
Q psy9583 618 FHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIV 697 (866)
Q Consensus 618 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~V 697 (866)
.+.|++.||+++++++|++++.+++.+..... +|. ++++|.|++|+|++|++++ ++.. ++++++|+|.|
T Consensus 198 ~~~l~~~Gv~i~~~~~v~~i~~~~~~v~~v~~--~g~------~i~~D~vv~a~G~~p~~~l--l~~~-l~~~~~G~i~V 266 (452)
T 2cdu_A 198 AKDYEAHGVNLVLGSKVAAFEEVDDEIITKTL--DGK------EIKSDIAILCIGFRPNTEL--LKGK-VAMLDNGAIIT 266 (452)
T ss_dssp HHHHHHTTCEEEESSCEEEEEEETTEEEEEET--TSC------EEEESEEEECCCEEECCGG--GTTT-SCBCTTSCBCC
T ss_pred HHHHHHCCCEEEcCCeeEEEEcCCCeEEEEEe--CCC------EEECCEEEECcCCCCCHHH--HHHh-hhcCCCCCEEE
Confidence 99999999999999999999875555432222 554 7999999999999999986 5666 88888899999
Q ss_pred CCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCCCC-CCCCccEEEEccCceeeeecCHHH
Q psy9583 698 NDNCETNIPNIYAIGDVVRG----------PMLAHKAEEEGIMVAEHISGQKHSI-NFNALPFVIYTFPEIASVGKTEQY 766 (866)
Q Consensus 698 d~~l~Ts~~~VyA~GD~a~~----------~~~~~~A~~~g~~aa~~i~g~~~~~-~~~~~p~~~~~~~~~a~vGl~e~~ 766 (866)
|++|||++|+|||+|||++. +++++.|.+||++||+||++....+ .+...++..+++|+++++|+++++
T Consensus 267 d~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~ 346 (452)
T 2cdu_A 267 DEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNAVRQGRLVGLNLTEDKVKDMGTQSSSGLKLYGRTYVSTGINTAL 346 (452)
T ss_dssp CTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCHHH
T ss_pred CCCcCcCCCCEEEcceEEEeccccCCCeeecchHHHHHHHHHHHHHHhCCCCCcCCCccceEEEEECCeeeEeecCCHHH
Confidence 99999999999999999973 4689999999999999999875433 234566788889999999999999
Q ss_pred HHhcCCcEEEEEEecCCchhhhhc-CCceEEEEEEEECCCCcEEEEEEECC-ChHHHHHHHHHHHHCCCCHHHHccc-cc
Q psy9583 767 LKKHNISYNVGIFPFLANSRARIL-GETSGMVKILSDMKSDEILGIHIIGP-MASELIAEAVIAIEFRASSEDIARI-CH 843 (866)
Q Consensus 767 a~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~kli~~~~~~~ilG~~~~g~-~a~eli~~~~~~i~~~~~~~~l~~~-~~ 843 (866)
|++.|+++.+.. +....++.++ +...+|+|+++++++++|||+|++|+ ++.|+|+.++++|++++|++||..+ ++
T Consensus 347 a~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~ 424 (452)
T 2cdu_A 347 AKANNLKVSEVI--IADNYRPEFMLSTDEVLMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDML 424 (452)
T ss_dssp HHHTTCCCEEEE--EEEESSCTTBSCCCEEEEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCC
T ss_pred HHHcCCceEEEE--EecCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhc
Confidence 999999888764 4556666665 55789999999988999999999999 8999999999999999999999987 89
Q ss_pred cCCChhHHH---HHHHHHhhhh
Q psy9583 844 VHPSLSEAM---KEAAMSIENR 862 (866)
Q Consensus 844 ~~Pt~~e~~---~~~~~~~~~~ 862 (866)
+|||++|++ +.+|+.++++
T Consensus 425 ~~Pt~~e~~~~~~~aa~~~~~~ 446 (452)
T 2cdu_A 425 FQPQFDRPFNYLNILGQAAQAQ 446 (452)
T ss_dssp CCTTTCCSSCHHHHHHHHHHHH
T ss_pred cCCCCCchHHHHHHHHHHHHHh
Confidence 999999974 4566666554
|
| >3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-54 Score=442.66 Aligned_cols=217 Identities=37% Similarity=0.576 Sum_probs=210.3
Q ss_pred CccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccc
Q psy9583 168 RLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIIN 247 (866)
Q Consensus 168 ~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n 247 (866)
...+++|++++||+||++|.+|++++||+|++.++|+|+|+++|+++++.++++.|.++|+++|++||+++||++||+||
T Consensus 16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N 95 (256)
T 3mae_A 16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN 95 (256)
T ss_dssp CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence 34678999999999999999999999999999999999999999999987777778999999999999999999999999
Q ss_pred eEEeCCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccc
Q psy9583 248 ASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSML 327 (866)
Q Consensus 248 ~~~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~ 327 (866)
++|+++++++++++|||+||++++||++|||+|++++|+.+|+++++++++++|+|+|.++|++||||||||+||+|+++
T Consensus 96 a~~~~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ 175 (256)
T 3mae_A 96 STWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQ 175 (256)
T ss_dssp EEEETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTCSE
T ss_pred hEEecCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 328 STPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 328 ~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|+|||||||+|||++|++.++|++.+|++++|++|++++++|||++||.++++|+..
T Consensus 176 ftpIInppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~ 232 (256)
T 3mae_A 176 SMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQA 232 (256)
T ss_dssp EECCCCTTSSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred eEcccCCCCceEEEecccEEEEEEECCEEEEeEEEEEEEEEccccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988754
|
| >1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-53 Score=433.61 Aligned_cols=215 Identities=60% Similarity=1.024 Sum_probs=208.5
Q ss_pred cccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceE
Q psy9583 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINAS 249 (866)
Q Consensus 170 ~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~ 249 (866)
++++|++++||+||++|++|++++||+|++.++|+|+|+++|+++++.+.++.|.++|+++|++||+++||++||+||++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 46789999999999999999999999999999999999999999998776667899999999999999999999999999
Q ss_pred EeCCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccc
Q psy9583 250 VDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLST 329 (866)
Q Consensus 250 ~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~ 329 (866)
|+++++++++++|||+||++++||++|||++++++|+.+|+++++++.+++|+|+|.++|++||||||||+||+|+.+|+
T Consensus 84 ~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~~t 163 (233)
T 1scz_A 84 IDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMST 163 (233)
T ss_dssp EETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCC
T ss_pred EeCCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 330 PIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 330 ~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|||||||+|||++|++.++|++.+|++++|++|++++++|||++||.++++|...
T Consensus 164 pIin~pq~aIl~vG~~~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~ 218 (233)
T 1scz_A 164 PIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVT 218 (233)
T ss_dssp CCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred cccCCCCcEEEEccccEEEEEEECCEEEEEEEEEEEEEEcceeechHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988754
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=475.33 Aligned_cols=408 Identities=19% Similarity=0.274 Sum_probs=321.9
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCC-CccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALG-GTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~G-G~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+||+|||||+||++||.+|++. |.+|+|||++ +..+ ..| .+|.. +. +.
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~------~~~~~~~~----~~~~~---------------~~--~~-- 87 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKG------EIYSYAQC----GLPYV---------------IS--GA-- 87 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSS------SCCSBCGG----GHHHH---------------HT--TS--
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECC------CCCCCCCC----Ccchh---------------hc--CC--
Confidence 7999999999999999999996 8999999997 2332 111 01100 00 00
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCce--EEEecEEEEecCCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTKE--TITAKYIIIATGSK 543 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g~--~i~~d~lViATGs~ 543 (866)
..++..+.. .....+.++.+++++.+..+. ++. ..+.+.+.. .+|+ ++.||+||+|||+.
T Consensus 88 ---~~~~~~l~~----------~~~~~~~~~~gv~~~~~~~v~~i~~---~~~~v~v~~~~~g~~~~~~~d~lviAtG~~ 151 (480)
T 3cgb_A 88 ---IASTEKLIA----------RNVKTFRDKYGIDAKVRHEVTKVDT---EKKIVYAEHTKTKDVFEFSYDRLLIATGVR 151 (480)
T ss_dssp ---SSCGGGGBS----------SCHHHHHHTTCCEEESSEEEEEEET---TTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred ---cCCHHHhhh----------cCHHHHHhhcCCEEEeCCEEEEEEC---CCCEEEEEEcCCCceEEEEcCEEEECCCCc
Confidence 001111100 011222345699999876655 443 346777764 3344 79999999999999
Q ss_pred CcCCCCCcCCCceEec---chhhhcccc-----CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHH
Q psy9583 544 ARSFPGVKFDENLILS---NKGALEMIN-----VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK 615 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t---~~~~~~~~~-----~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~ 615 (866)
|+.|+.++.+...+++ .++...+.. .+++++|||+|++|+|+|..|.++|.+|+++++.+.+++.+++++.+
T Consensus 152 p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~ 231 (480)
T 3cgb_A 152 PVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAE 231 (480)
T ss_dssp ECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHH
T ss_pred ccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHH
Confidence 9877655444334443 455544433 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcE
Q psy9583 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI 695 (866)
Q Consensus 616 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 695 (866)
.+.+.+++.||++++++.|+++..++....+.+ ++. ++++|.||+|+|++|++++ ++.+|++++++|+|
T Consensus 232 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~---~~~------~i~~D~vi~a~G~~p~~~~--l~~~g~~~~~~G~I 300 (480)
T 3cgb_A 232 YIYKEADKHHIEILTNENVKAFKGNERVEAVET---DKG------TYKADLVLVSVGVKPNTDF--LEGTNIRTNHKGAI 300 (480)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEESSBEEEEEE---TTE------EEECSEEEECSCEEESCGG--GTTSCCCBCTTSCB
T ss_pred HHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEE---CCC------EEEcCEEEECcCCCcChHH--HHhCCcccCCCCCE
Confidence 999999999999999999999987642222332 332 7999999999999999987 57889999888999
Q ss_pred EeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCCCC-CCCCccEEEEccCceeeeecCH
Q psy9583 696 IVNDNCETNIPNIYAIGDVVRG----------PMLAHKAEEEGIMVAEHISGQKHSI-NFNALPFVIYTFPEIASVGKTE 764 (866)
Q Consensus 696 ~Vd~~l~Ts~~~VyA~GD~a~~----------~~~~~~A~~~g~~aa~~i~g~~~~~-~~~~~p~~~~~~~~~a~vGl~e 764 (866)
.||+++||++|+|||+|||+.. +++++.|..||++||+||++....+ .+...|++.|++|+++++|+++
T Consensus 301 ~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~ 380 (480)
T 3cgb_A 301 EVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIGTTANKQGRLAGLNMLDKRRAFKGTLGTGIIKFMNLTLARTGLNE 380 (480)
T ss_dssp CCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBCCCEEEEETTEEEEEEECCH
T ss_pred EECCCccCCCCCEEEeeeEEEecCCCCCcceecchHHHHHHHHHHHHHHhcCCCccCCCccceeEEEECCcEEEEeCCCH
Confidence 9999999999999999999942 2679999999999999999876554 3556789999999999999999
Q ss_pred HHHHhcCCcEEEEEEecCCchhhhhc-CCceEEEEEEEECCCCcEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHccc-
Q psy9583 765 QYLKKHNISYNVGIFPFLANSRARIL-GETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIARI- 841 (866)
Q Consensus 765 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~kli~~~~~~~ilG~~~~g~~-a~eli~~~~~~i~~~~~~~~l~~~- 841 (866)
++|++.|+++.+..+.. ..++.+. +++.+|+|+++++++++|||+|++|+. +.|+|+.+++||++++|++||.++
T Consensus 381 ~~a~~~g~~~~~~~~~~--~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~ 458 (480)
T 3cgb_A 381 KEAKGLHIPYKTVKVDS--TNMAGYYPNAKPLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVD 458 (480)
T ss_dssp HHHHHTTCCEEEEEEEE--ESSCTTSTTCCEEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCC
T ss_pred HHHHHcCCceEEEEEec--CCcccccCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcc
Confidence 99999999998877654 3344333 567899999999889999999999998 999999999999999999999997
Q ss_pred cccCCChhHHHHHHH
Q psy9583 842 CHVHPSLSEAMKEAA 856 (866)
Q Consensus 842 ~~~~Pt~~e~~~~~~ 856 (866)
+++|||++|++..+.
T Consensus 459 ~~~~Pt~~e~~~~~~ 473 (480)
T 3cgb_A 459 LSYAPPYNSVWDPIQ 473 (480)
T ss_dssp CCCCTTTCCSSCHHH
T ss_pred cccCCCCCCchhHHH
Confidence 679999999765443
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=471.48 Aligned_cols=411 Identities=18% Similarity=0.232 Sum_probs=321.6
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
+||+|||||+||++||.+|++. |.+|+|||++ +.+| +.+| .... .. .. .+.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~------~~~~----~~~~---~~~~-------~~----~~-~~~-- 53 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG------DFIS----FLSA---GMQL-------YL----EG-KVK-- 53 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS------SSSS----BCGG---GHHH-------HH----TT-SSC--
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECC------CccC----cccc---cchh-------hh----cC-ccC--
Confidence 4799999999999999999998 8999999997 2332 1111 0000 00 00 000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCce--EEEecEEEEecCCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTKE--TITAKYIIIATGSKA 544 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g~--~i~~d~lViATGs~p 544 (866)
++.. +...+..++++.+++++.+..+. ++. ..+.+.+.+ .+|. ++.||+||||||+.|
T Consensus 54 ----~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~~i~~---~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p 115 (447)
T 1nhp_A 54 ----DVNS-----------VRYMTGEKMESRGVNVFSNTEITAIQP---KEHQVTVKDLVSGEERVENYDKLIISPGAVP 115 (447)
T ss_dssp ----CGGG-----------SBSCCHHHHHHTTCEEEETEEEEEEET---TTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred ----CHHH-----------hhcCCHHHHHHCCCEEEECCEEEEEeC---CCCEEEEEecCCCceEEEeCCEEEEcCCCCc
Confidence 0000 01112234566799998887775 433 346777764 2343 589999999999999
Q ss_pred cCCCCCcCCCceEecc---hhhhccc---c--CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHH
Q psy9583 545 RSFPGVKFDENLILSN---KGALEMI---N--VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAK 615 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~---~~~~~~~---~--~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~ 615 (866)
..|+.++.+...+++. ++...+. . .+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+
T Consensus 116 ~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 195 (447)
T 1nhp_A 116 FELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTD 195 (447)
T ss_dssp CCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHH
T ss_pred CCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHH
Confidence 8776555444456644 3332222 2 689999999999999999999999999999999999988 68999999
Q ss_pred HHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcE
Q psy9583 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI 695 (866)
Q Consensus 616 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 695 (866)
.+.+.+++.||++++++.|++++.++....+.+ ++. ++++|.|++|+|++|+.++ ++.. ++++.+|+|
T Consensus 196 ~l~~~l~~~gv~i~~~~~v~~i~~~~~v~~v~~---~~~------~i~~d~vi~a~G~~p~~~~--~~~~-~~~~~~G~i 263 (447)
T 1nhp_A 196 VLTEEMEANNITIATGETVERYEGDGRVQKVVT---DKN------AYDADLVVVAVGVRPNTAW--LKGT-LELHPNGLI 263 (447)
T ss_dssp HHHHHHHTTTEEEEESCCEEEEECSSBCCEEEE---SSC------EEECSEEEECSCEEESCGG--GTTT-SCBCTTSCB
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEccCcEEEEEE---CCC------EEECCEEEECcCCCCChHH--HHhh-hhhcCCCcE
Confidence 999999999999999999999986632212333 344 7999999999999999987 4666 788888999
Q ss_pred EeCCCCCCCCCCEEEecccCCC----------CCcHHHHHHHHHHHHHHHhCCCCCC-CCCCccEEEEccCceeeeecCH
Q psy9583 696 IVNDNCETNIPNIYAIGDVVRG----------PMLAHKAEEEGIMVAEHISGQKHSI-NFNALPFVIYTFPEIASVGKTE 764 (866)
Q Consensus 696 ~Vd~~l~Ts~~~VyA~GD~a~~----------~~~~~~A~~~g~~aa~~i~g~~~~~-~~~~~p~~~~~~~~~a~vGl~e 764 (866)
.||++|||++|+|||+|||+.. +++++.|.+||++||+||++...++ .+...|++.|++|+++++|+++
T Consensus 264 ~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~~~vG~~~ 343 (447)
T 1nhp_A 264 KTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINE 343 (447)
T ss_dssp CCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCCCCCBCCCEEEEETTEEEEEEECCH
T ss_pred EECccccCCCCCEEEeeeEEEeeccCCCCceechhHHHHHHHHHHHHHhhcCCCCCCCCccccEEEEECCeeeEEecCCH
Confidence 9999999999999999999962 4689999999999999999865433 2456789999999999999999
Q ss_pred HHHHhcCCcEEEEEEecCCchhhhhc-CCceEEEEEEEECCCCcEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHccc-
Q psy9583 765 QYLKKHNISYNVGIFPFLANSRARIL-GETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIARI- 841 (866)
Q Consensus 765 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~kli~~~~~~~ilG~~~~g~~-a~eli~~~~~~i~~~~~~~~l~~~- 841 (866)
++|+..|+++.+.. +....++.+. +++.+|+|+++++++++|||+|++|+. +.|+|+.++++|++++|++||..+
T Consensus 344 ~~a~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~ 421 (447)
T 1nhp_A 344 VMAQKLGKETKAVT--VVEDYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYAD 421 (447)
T ss_dssp HHHHHHTCCCEEEE--EEEESSCTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCC
T ss_pred HHHHHcCCceEEEE--EEcCCccccCCCCceEEEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcc
Confidence 99999999887764 3455566655 567899999999889999999999998 999999999999999999999997
Q ss_pred cccCCChhHHHH---HHHHHhh
Q psy9583 842 CHVHPSLSEAMK---EAAMSIE 860 (866)
Q Consensus 842 ~~~~Pt~~e~~~---~~~~~~~ 860 (866)
+++|||++|++. .+|..+.
T Consensus 422 ~~~~Pt~~e~~~~~~~aa~~~~ 443 (447)
T 1nhp_A 422 FFFQPAFDKPWNIINTAALEAV 443 (447)
T ss_dssp CCCCTTTCCSSCHHHHHHHHHH
T ss_pred eecCCCCCCcccHHHHHHHHHh
Confidence 799999999764 4444443
|
| >3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-53 Score=430.91 Aligned_cols=208 Identities=27% Similarity=0.469 Sum_probs=200.9
Q ss_pred ccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEE
Q psy9583 171 ECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASV 250 (866)
Q Consensus 171 ~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~ 250 (866)
++ |+++|||+||++|++|++++||+|++.++|+|+|+++|+++++ .+.|+|+++|++||+++||++||+||++|
T Consensus 16 ~r-pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-----~~~kls~~~~iikAva~AL~~~P~~Na~~ 89 (250)
T 3l60_A 16 VR-PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVILNSTW 89 (250)
T ss_dssp CC-CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGGGSEEE
T ss_pred CC-CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhEEE
Confidence 45 9999999999999999999999999999999999999999864 37899999999999999999999999999
Q ss_pred eC----CeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCcc
Q psy9583 251 DG----NNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSM 326 (866)
Q Consensus 251 ~~----~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~ 326 (866)
++ +++++++++|||+||++++||++|||+|++++|+.+|+++++++++++|+|+|.++|++||||||||+||+|++
T Consensus 90 ~~~~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~ 169 (250)
T 3l60_A 90 VDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVD 169 (250)
T ss_dssp ECTTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCS
T ss_pred eccCCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcc
Confidence 75 49999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 327 LSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 327 ~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
+|+|||||||+|||++|++.++|++.+|++++|++|++++++|||++||.++++|+..
T Consensus 170 ~ftpIinppq~aIL~vG~i~~~pv~~~g~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~ 227 (250)
T 3l60_A 170 DGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCE 227 (250)
T ss_dssp SCCCCCCTTCSEEEEECCCEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred eeEeeeCCCCceEEEecceEEEeEEECCEEEEEEEeEEEEEecccccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988754
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-51 Score=484.65 Aligned_cols=404 Identities=21% Similarity=0.275 Sum_probs=318.3
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceecc-ccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGC-IPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~-~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+||+|||||+||++||.+|++. +++|+|||+++ .++. ..| +|. .. .......
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~------~~~~----~~~~l~~-----------~~----~~~~~~~ 56 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGE------YVSF----ANCGLPY-----------HI----SGEIAQR 56 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSS------CSSB----CGGGHHH-----------HH----TSSSCCG
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCC------Cccc----cccCchH-----------Hh----cCCcCCh
Confidence 6899999999999999999998 79999999973 3220 000 110 00 0000000
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCc--eEEEecEEEEecCCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTK--ETITAKYIIIATGSK 543 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g--~~i~~d~lViATGs~ 543 (866)
... +......+.++.+++++.+..+. ++. ..+.+.+.. .++ .++.||+||||||+.
T Consensus 57 ~~~-----------------~~~~~~~~~~~~~i~~~~~~~V~~id~---~~~~v~~~~~~~g~~~~~~~d~lviAtG~~ 116 (565)
T 3ntd_A 57 SAL-----------------VLQTPESFKARFNVEVRVKHEVVAIDR---AAKLVTVRRLLDGSEYQESYDTLLLSPGAA 116 (565)
T ss_dssp GGG-----------------BCCCHHHHHHHHCCEEETTEEEEEEET---TTTEEEEEETTTCCEEEEECSEEEECCCEE
T ss_pred HHh-----------------hccCHHHHHHhcCcEEEECCEEEEEEC---CCCEEEEEecCCCCeEEEECCEEEECCCCC
Confidence 000 01112333445789988776665 443 556777764 223 479999999999999
Q ss_pred CcCCCCCcCCCceEecchhhh---ccc-----cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHH
Q psy9583 544 ARSFPGVKFDENLILSNKGAL---EMI-----NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAK 615 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t~~~~~---~~~-----~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~ 615 (866)
|+.|+.++.+...+++...+. .+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++.+
T Consensus 117 p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~ 196 (565)
T 3ntd_A 117 PIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAG 196 (565)
T ss_dssp ECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHH
T ss_pred CCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHH
Confidence 987766655445555544322 221 357899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCEEEeCceEEEEEE-------------------cCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 616 KAFHLLNKQGLNIILNTKIHDIKI-------------------NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 616 ~l~~~l~~~GV~i~~~~~v~~i~~-------------------~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.+.+.|++.||++++++.+++++. .++.+.+.+ .+|. ++++|.|++|+|++|+
T Consensus 197 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~g~------~i~~D~vi~a~G~~p~ 268 (565)
T 3ntd_A 197 FAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTL--SNGE------LLETDLLIMAIGVRPE 268 (565)
T ss_dssp HHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEE--TTSC------EEEESEEEECSCEEEC
T ss_pred HHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEE--cCCC------EEEcCEEEECcCCccc
Confidence 999999999999999999999987 345555555 3665 8999999999999999
Q ss_pred CCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCC-------C---CCcHHHHHHHHHHHHHHHhCCCCCCCCC-
Q psy9583 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVR-------G---PMLAHKAEEEGIMVAEHISGQKHSINFN- 745 (866)
Q Consensus 677 ~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~-------~---~~~~~~A~~~g~~aa~~i~g~~~~~~~~- 745 (866)
+++ ++.+|++++++|+|.||+++||++|+|||+|||+. . +++++.|..||++||+||+|....+...
T Consensus 269 ~~l--~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~ 346 (565)
T 3ntd_A 269 TQL--ARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGREERYQGTQ 346 (565)
T ss_dssp CHH--HHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCCCCCCBC
T ss_pred hHH--HHhCCcccCCCCCEEECCCcccCCCCEEEeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhcCCCccCCCcc
Confidence 986 57889999989999999999999999999999983 2 3589999999999999999977654322
Q ss_pred CccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhc-CCceEEEEEEEECCCCcEEEEEEECCCh-HHHHH
Q psy9583 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARIL-GETSGMVKILSDMKSDEILGIHIIGPMA-SELIA 823 (866)
Q Consensus 746 ~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~kli~~~~~~~ilG~~~~g~~a-~eli~ 823 (866)
..+++.|++|+++++|++|+||++.|+++.+..+ ....++.++ +++.||+|+++|+++++|||+|++|+++ .|+|+
T Consensus 347 ~~~~~~~~~~~~~~vG~~e~~a~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~ 424 (565)
T 3ntd_A 347 GTAICKVFDLAVGATGKNEKQLKQAGIAFEKVYV--HTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRID 424 (565)
T ss_dssp CCEEEEETTEEEEEEECCHHHHHHTTCCCEEEEE--EEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHH
T ss_pred cceEEEEcCcEEEEecCCHHHHHHcCCCeEEEEE--ecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHH
Confidence 2345678999999999999999999999887554 344566565 6788999999999999999999999998 99999
Q ss_pred HHHHHHHCCCCHHHHcccccc-CCChhHH
Q psy9583 824 EAVIAIEFRASSEDIARICHV-HPSLSEA 851 (866)
Q Consensus 824 ~~~~~i~~~~~~~~l~~~~~~-~Pt~~e~ 851 (866)
.+++||++++|++||+++.+. ||++++.
T Consensus 425 ~~~~ai~~~~~~~~l~~~~~~~~P~~~~~ 453 (565)
T 3ntd_A 425 VMAVAQRAGMTVEQLQHLELSYAPPYGSA 453 (565)
T ss_dssp HHHHHHHTTCBHHHHTTCCCCCCTTTCCS
T ss_pred HHHHHHHcCCCHHHHhhhhhccCcccCch
Confidence 999999999999999999765 5888754
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-51 Score=486.44 Aligned_cols=403 Identities=22% Similarity=0.302 Sum_probs=319.0
Q ss_pred ccceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceecc-ccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGC-IPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~-~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
++||+|||||+||++||.+|++. |++|+|||+++ .++ +..| +|. .. ...-..
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~------~~~----~~~~~lp~-----------~~----~g~~~~ 90 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGE------YIS----FANCGLPY-----------YI----GGVITE 90 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSS------CSS----BCGGGHHH-----------HH----TTSSCC
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCC------Ccc----ccCCCCch-----------hh----cCcCCC
Confidence 48999999999999999999998 89999999973 222 0000 110 00 000000
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCce--EEEecEEEEecCC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTKE--TITAKYIIIATGS 542 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g~--~i~~d~lViATGs 542 (866)
.. ..+...+..+.++.++++..+..+. ++. ..+.+.+.. .++. .+.||+||+|||+
T Consensus 91 ~~-----------------~~~~~~~~~~~~~~gi~v~~~~~V~~id~---~~~~v~v~~~~~g~~~~~~~d~lviAtG~ 150 (588)
T 3ics_A 91 RQ-----------------KLLVQTVERMSKRFNLDIRVLSEVVKINK---EEKTITIKNVTTNETYNEAYDVLILSPGA 150 (588)
T ss_dssp GG-----------------GGBSSCHHHHHHHTTCEEECSEEEEEEET---TTTEEEEEETTTCCEEEEECSEEEECCCE
T ss_pred hH-----------------HhhccCHHHHHHhcCcEEEECCEEEEEEC---CCCEEEEeecCCCCEEEEeCCEEEECCCC
Confidence 00 0011223445667899998877666 433 456777764 3343 7899999999999
Q ss_pred CCcCCCCCcC-CCceEecchhhhcc--------ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHH
Q psy9583 543 KARSFPGVKF-DENLILSNKGALEM--------INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEI 613 (866)
Q Consensus 543 ~p~~~p~~~~-~~~~~~t~~~~~~~--------~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~ 613 (866)
.|+.|+.++. +...+++..+.... ...+++++|||+|++|+|+|..|.+.|.+|+++++.+++++.+++++
T Consensus 151 ~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~ 230 (588)
T 3ics_A 151 KPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEM 230 (588)
T ss_dssp EECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHH
T ss_pred CCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHH
Confidence 9987765554 34455655443332 14589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCC
Q psy9583 614 AKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENN 693 (866)
Q Consensus 614 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G 693 (866)
.+.+.+.|++.||++++++.|++++.+++. +.+. +|. ++++|.||+|+|++|++++ ++.+|++++++|
T Consensus 231 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~--~g~------~i~~D~Vi~a~G~~p~~~~--l~~~g~~~~~~g 298 (588)
T 3ics_A 231 AAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLK--SGS------VIQTDMLILAIGVQPESSL--AKGAGLALGVRG 298 (588)
T ss_dssp HHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEET--TSC------EEECSEEEECSCEEECCHH--HHHTTCCBCGGG
T ss_pred HHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEEC--CCC------EEEcCEEEEccCCCCChHH--HHhcCceEcCCC
Confidence 999999999999999999999999876543 3443 565 8999999999999999987 688899999899
Q ss_pred cEEeCCCCCCCCCCEEEecccCC-------C---CCcHHHHHHHHHHHHHHHhC-CCCCCCCCCcc--EEEEccCceeee
Q psy9583 694 FIIVNDNCETNIPNIYAIGDVVR-------G---PMLAHKAEEEGIMVAEHISG-QKHSINFNALP--FVIYTFPEIASV 760 (866)
Q Consensus 694 ~i~Vd~~l~Ts~~~VyA~GD~a~-------~---~~~~~~A~~~g~~aa~~i~g-~~~~~~~~~~p--~~~~~~~~~a~v 760 (866)
+|.||+++||++|+|||+|||+. . +++++.|..||++||+||+| ....+. ...| ...|++|+++++
T Consensus 299 ~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~-~~~~~~~~~~~~~~~a~v 377 (588)
T 3ics_A 299 TIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMIPLAWPANRQGRMLADIIHGHTDSLYK-GTLGTSVAKVFDLTVATT 377 (588)
T ss_dssp CBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCCSSCCC-CBCCCEEEEETTEEEEEE
T ss_pred CEEECCccccCCCCEEEeeeeeecccccCCcccccccHHHHHHHHHHHHHHhcCCCccccC-CcccceEEEECCeEEEEe
Confidence 99999999999999999999994 2 46899999999999999999 554432 2333 345899999999
Q ss_pred ecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCC-hHHHHHHHHHHHHCCCCHHHHc
Q psy9583 761 GKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIAIEFRASSEDIA 839 (866)
Q Consensus 761 Gl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~-a~eli~~~~~~i~~~~~~~~l~ 839 (866)
|+||+||++.|+++.+.+++.... ...+.+++.||+|+++|+++++|||+|++|++ +.|+|+.+++||++++|++||+
T Consensus 378 Glte~~a~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~~l~ 456 (588)
T 3ics_A 378 GLNEKILKRLNIPYEVVHVQANSH-AGYYPNATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVLDLP 456 (588)
T ss_dssp ECCHHHHHHTTCCCEEEEEEEESS-CTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTTTGG
T ss_pred cCCHHHHHHcCCCeEEEEEecCCc-cccCCCCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHHHhh
Confidence 999999999999999887753222 12445678999999999999999999999985 8999999999999999999999
Q ss_pred cccccC-CChhHH
Q psy9583 840 RICHVH-PSLSEA 851 (866)
Q Consensus 840 ~~~~~~-Pt~~e~ 851 (866)
+++++| |++++.
T Consensus 457 ~~~~~~~P~~~~~ 469 (588)
T 3ics_A 457 DLELSYAPPYSSA 469 (588)
T ss_dssp GCCCCCSTTTCCS
T ss_pred hhhhccCCCcccc
Confidence 999887 987754
|
| >1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-51 Score=423.67 Aligned_cols=214 Identities=33% Similarity=0.474 Sum_probs=205.4
Q ss_pred cccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceE
Q psy9583 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINAS 249 (866)
Q Consensus 170 ~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~ 249 (866)
.+.+|++++||+||++|++||+++||+|++.++|+|+|+++|+++++.+. +.|.++|+++|++||+++||++||+||++
T Consensus 15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~-~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHH-HTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhh-hccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 46789999999999999999999999999999999999999999987544 35899999999999999999999999999
Q ss_pred EeC--CeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccc
Q psy9583 250 VDG--NNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSML 327 (866)
Q Consensus 250 ~~~--~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~ 327 (866)
|++ +++++++++|||+||++++||++|||+++|++|+.+|+++++++++++|+|+|.++|++||||||||+||+|+++
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ 173 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTA 173 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSC
T ss_pred EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccc
Confidence 986 499999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 328 STPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 328 ~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|+|||||||+|||++|++.++|++.+|++++|++|++++++|||++||.++++|...
T Consensus 174 ~tpIin~pq~aIl~vG~~~~~pv~~~g~i~~~~~m~lsls~DHRviDGa~aa~Fl~~ 230 (243)
T 1dpb_A 174 FTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKR 230 (243)
T ss_dssp CCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHH
T ss_pred eECccCCCCCeEEEccccEEEEEEECCeEEEEEEEEEEEEECcccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988754
|
| >2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-51 Score=423.82 Aligned_cols=215 Identities=31% Similarity=0.476 Sum_probs=203.9
Q ss_pred CccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccc
Q psy9583 168 RLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIIN 247 (866)
Q Consensus 168 ~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n 247 (866)
...+++|+++|||+||++|++|+ ++||+|++.++|+|+|+++|+++++. .++.|.++|+++|++||+++||++||+||
T Consensus 29 ~~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~-~~~~g~kls~~~~~ikAva~Al~~~P~~N 106 (262)
T 2ii3_A 29 GKDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPI-AFARGIKLSFMPFFLKAASLGLLQFPILN 106 (262)
T ss_dssp CCCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHH-HHHTTCCCCSHHHHHHHHHHHHHHCGGGS
T ss_pred CCcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhh-hhhccCCccHHHHHHHHHHHHHHhChHhh
Confidence 34578999999999999999997 59999999999999999999999874 33458999999999999999999999999
Q ss_pred eEEeC--CeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCc
Q psy9583 248 ASVDG--NNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGS 325 (866)
Q Consensus 248 ~~~~~--~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~ 325 (866)
++|++ +++++++++|||+||++++||++|||+|++++|+.+|+++++++++++|+|+|.++|++||||||||+||+|+
T Consensus 107 a~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~ 186 (262)
T 2ii3_A 107 ASVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGG 186 (262)
T ss_dssp EEECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCC
T ss_pred EEEeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCc
Confidence 99985 4899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEEEEeccceeeEEEe-CCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 326 MLSTPIINPPQSAILGVHAIKKRVIVE-NNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 326 ~~~~~ii~~p~~~il~vg~~~~~~~~~-~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
++|+|||||||+|||++|++.++|++. +|++++|++|++++++|||++||.++++|+..
T Consensus 187 ~~~tPIinppq~aIL~vG~~~~~pv~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~ 246 (262)
T 2ii3_A 187 TYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFSNL 246 (262)
T ss_dssp SCEECCCCTTCCEEEEECCCEEEEEECTTSCEEEEEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred cceECccCCCcceEEEcCccEEEEEEecCCcEEEEeeeEEEEEECcceecHHHHHHHHHH
Confidence 999999999999999999999999996 78999999999999999999999999988754
|
| >3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-51 Score=418.18 Aligned_cols=213 Identities=31% Similarity=0.462 Sum_probs=204.1
Q ss_pred cccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceE
Q psy9583 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINAS 249 (866)
Q Consensus 170 ~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~ 249 (866)
.+++|++++||+||++|++||+++||+|++.++|+|+|+++|+++++.+++ +.++|+++|++||+++||++||+||++
T Consensus 12 ~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~--~~kls~~~~~ikAv~~Al~~~P~~Na~ 89 (239)
T 3b8k_A 12 FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFIIKASALACLKVPEANSS 89 (239)
T ss_dssp CCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT--SSCCCHHHHHHHHHHHHHHHCCCSCTT
T ss_pred ceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc--cCCCCHHHHHHHHHHHHHHhChHhhEE
Confidence 567899999999999999999999999999999999999999999875433 369999999999999999999999999
Q ss_pred EeCCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccc
Q psy9583 250 VDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLST 329 (866)
Q Consensus 250 ~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~ 329 (866)
|+++++++++++|||+||++++||++|||+++|++|+.+|+++++++.+++|+|+|.++|++||||||||+||+|+++|+
T Consensus 90 ~~~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~ft 169 (239)
T 3b8k_A 90 WMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFS 169 (239)
T ss_dssp SCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSCC
T ss_pred EECCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCceEEEEeccceeeEEE--eCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 330 PIINPPQSAILGVHAIKKRVIV--ENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 330 ~ii~~p~~~il~vg~~~~~~~~--~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|||||||+|||++|++.++|++ ++|++++|++|++++++|||++||.++++|...
T Consensus 170 piin~pq~aIl~vG~~~~~pv~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~ 226 (239)
T 3b8k_A 170 AIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAE 226 (239)
T ss_dssp CCCCTTSCCCCEECCCCCSCCCCCSSSSCCCCCCEEEEECCCCCSSCHHHHHHHHHH
T ss_pred CcCCCCceEEEECcccEEEEEEEcCCCcEEEEEEEEEEEEEcceeechHHHHHHHHH
Confidence 9999999999999999999999 588999999999999999999999999988754
|
| >3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-50 Score=408.30 Aligned_cols=203 Identities=38% Similarity=0.587 Sum_probs=194.9
Q ss_pred ccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccce
Q psy9583 169 LEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINA 248 (866)
Q Consensus 169 ~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~ 248 (866)
..+++|++++||+||++|++|++++||+|++.++|+|+|+++|+++++. |.|+|+++|++||+++||++||+||+
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~-----g~kls~~~~~ikA~~~Al~~~P~~N~ 79 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR-----NRKVTVTGFLARIVPSILKQYPYLNA 79 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT-----TCCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHHHhCHHhhe
Confidence 3578999999999999999999999999999999999999999998753 78999999999999999999999999
Q ss_pred EEeCC--eeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCcc
Q psy9583 249 SVDGN--NIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSM 326 (866)
Q Consensus 249 ~~~~~--~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~ 326 (866)
+|+++ ++++++++|||+||++++||++|||++++++|+.+|+++++++++++|+|+|.++|++||||||||+||+|++
T Consensus 80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~ 159 (224)
T 3rqc_A 80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGI 159 (224)
T ss_dssp BCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCS
T ss_pred EEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCcc
Confidence 99987 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 327 LSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 327 ~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
+|+|||||||+|||++|++.++|+ |++|++++++|||++||.++++|...
T Consensus 160 ~~tpiin~pq~aIl~vG~~~~~p~--------r~~m~lsls~DHRviDGa~aa~Fl~~ 209 (224)
T 3rqc_A 160 MSTPIINYPEVAILGVHRILEREG--------RKYMYLSLSCDHRLIDGAVATRFIVD 209 (224)
T ss_dssp EEECCCCTTBSEEEEECCCEEETT--------EEECCEEEEEETTTSCHHHHHHHHHH
T ss_pred ceEeccCCCCceEEEecccEEECC--------ceEEEEEEEeccceecHHHHHHHHHH
Confidence 999999999999999999998885 89999999999999999999988754
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=399.29 Aligned_cols=362 Identities=18% Similarity=0.240 Sum_probs=278.3
Q ss_pred cccccceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYG 464 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~g 464 (866)
|+.++||+|||||+||++||..|++.| .+|+|||++. ||.|++.++... +. .+
T Consensus 1 M~~~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~---------------g~~~~~~~l~~~---------~~-~~ 55 (384)
T 2v3a_A 1 MSERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD---------------GRSYSKPMLSTG---------FS-KN 55 (384)
T ss_dssp ---CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC---------------CCEECGGGGGGT---------TT-TT
T ss_pred CCCCCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC---------------CCccCcccccHH---------Hh-CC
Confidence 444699999999999999999999998 5699999861 344444332110 00 00
Q ss_pred ccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEE-EeccccCcccEEEEEcCCceEEEecEEEEecCCC
Q psy9583 465 INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAI-FTGKIQNNFHEIQIINKTKETITAKYIIIATGSK 543 (866)
Q Consensus 465 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v-~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~ 543 (866)
.....+ ....+..++++.+++++.+..+ .++. ..+.+.+ . +..+.||+||+|||+.
T Consensus 56 -------~~~~~~----------~~~~~~~~~~~~~v~~~~~~~v~~i~~---~~~~v~~--~-~~~~~~d~lviAtG~~ 112 (384)
T 2v3a_A 56 -------KDADGL----------AMAEPGAMAEQLNARILTHTRVTGIDP---GHQRIWI--G-EEEVRYRDLVLAWGAE 112 (384)
T ss_dssp -------CCHHHH----------EEECHHHHHHHTTCEEECSCCCCEEEG---GGTEEEE--T-TEEEECSEEEECCCEE
T ss_pred -------CCHHHh----------hccCHHHHHHhCCcEEEeCCEEEEEEC---CCCEEEE--C-CcEEECCEEEEeCCCC
Confidence 011111 0112344567789999876543 3443 3355555 3 3579999999999999
Q ss_pred CcCCCCCcCCCceEecchhhhccc------cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-ccHHHHHH
Q psy9583 544 ARSFPGVKFDENLILSNKGALEMI------NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKK 616 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t~~~~~~~~------~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~ 616 (866)
|..|+.++.....+++.+++.+.. ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.
T Consensus 113 p~~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~ 192 (384)
T 2v3a_A 113 PIRVPVEGDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKA 192 (384)
T ss_dssp ECCCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHH
T ss_pred cCCCCCCCcCcCCEEEECCHHHHHHHHHhhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHH
Confidence 987766554444567665554432 24899999999999999999999999999999999999886 59999999
Q ss_pred HHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEE
Q psy9583 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFII 696 (866)
Q Consensus 617 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 696 (866)
+.+.+++.||++++++.|++++.+++++.+.+. +|. ++++|.|++|+|++|+.++ ++.+|++++ +| |.
T Consensus 193 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~--~g~------~i~~d~vv~a~G~~p~~~l--~~~~g~~~~-~g-i~ 260 (384)
T 2v3a_A 193 VQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLS--DGE------VIPCDLVVSAVGLRPRTEL--AFAAGLAVN-RG-IV 260 (384)
T ss_dssp HHHHHHTTTCEEEESCCEEEEEEETTEEEEEET--TSC------EEEESEEEECSCEEECCHH--HHHTTCCBS-SS-EE
T ss_pred HHHHHHHcCCEEEeCCEEEEEEecCCEEEEEEC--CCC------EEECCEEEECcCCCcCHHH--HHHCCCCCC-CC-EE
Confidence 999999999999999999999987776666654 665 7999999999999999985 678899987 67 99
Q ss_pred eCCCCCCCCCCEEEecccCC--C--CCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEcc-CceeeeecCHHHHHhcC
Q psy9583 697 VNDNCETNIPNIYAIGDVVR--G--PMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTF-PEIASVGKTEQYLKKHN 771 (866)
Q Consensus 697 Vd~~l~Ts~~~VyA~GD~a~--~--~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~-~~~a~vGl~e~~a~~~~ 771 (866)
||+++||++|+|||+|||+. + ..+++.|..||+++|+||+|...++++..+|+++|+. +++..+|+++.+. +
T Consensus 261 vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~a~~i~g~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~---~ 337 (384)
T 2v3a_A 261 VDRSLRTSHANIYALGDCAEVDGLNLLYVMPLMACARALAQTLAGNPSQVAYGPMPVTVKTPACPLVVSPPPRGMD---G 337 (384)
T ss_dssp ECTTCBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHHHHHHTTCCCCCCCCCCCEEECCTTSCEEEECCCTTCC---C
T ss_pred ECCCCCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCeeEEEecCCCCCC---c
Confidence 99999999999999999984 2 2368889999999999999988788889999999886 5899999875311 1
Q ss_pred CcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHH
Q psy9583 772 ISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAV 826 (866)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~ 826 (866)
+..+.+++.||+|++++ ++++|+|++++|+.|.|+++.+.
T Consensus 338 --------------~~~~~~~~~g~~~~~~~-~~~~i~G~~~~g~~a~e~~~~~~ 377 (384)
T 2v3a_A 338 --------------QWLVEGSGTDLKVLCRD-TAGRVIGYALTGAAVNEKLALNK 377 (384)
T ss_dssp --------------EEEEEEETTEEEEEEEC-TTSCEEEEEEEGGGGGGHHHHHT
T ss_pred --------------eEEEEecCCcEEEEEEc-cCCEEEEEEEECcchHHHHHHHH
Confidence 11112235689999887 67999999999999999887654
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=393.48 Aligned_cols=363 Identities=24% Similarity=0.274 Sum_probs=280.2
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++.+|+|||||+||++||..|+..+.+|+|||+++ .++.. . | . ....+.. .....
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~------~~~y~----~--~---~-----l~~~l~g-----~~~~~ 62 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEK------YLPYY----R--P---R-----LNEIIAK-----NKSID 62 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSS------SCCBC----G--G---G-----HHHHHHS-----CCCGG
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCC------CCCcc----c--C---h-----hhHHHcC-----CCCHH
Confidence 35789999999999999999987899999999973 22210 0 0 0 0000000 00100
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
.+......++++.+++++.++.+. ++. ..+.+.+ ++++++.||+||||||+.|+.|
T Consensus 63 ------------------~l~~~~~~~~~~~~i~~~~~~~V~~id~---~~~~v~~--~~g~~~~yd~lvlAtG~~p~~p 119 (385)
T 3klj_A 63 ------------------DILIKKNDWYEKNNIKVITSEFATSIDP---NNKLVTL--KSGEKIKYEKLIIASGSIANKI 119 (385)
T ss_dssp ------------------GTBSSCHHHHHHTTCEEECSCCEEEEET---TTTEEEE--TTSCEEECSEEEECCCEEECCC
T ss_pred ------------------HccCCCHHHHHHCCCEEEeCCEEEEEEC---CCCEEEE--CCCCEEECCEEEEecCCCcCCC
Confidence 011112345677899999986555 554 3455544 5678899999999999999877
Q ss_pred CCCcCCCceEec---chhhhcccc---CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-ccHHHHHHHHHH
Q psy9583 548 PGVKFDENLILS---NKGALEMIN---VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHL 620 (866)
Q Consensus 548 p~~~~~~~~~~t---~~~~~~~~~---~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~ 620 (866)
+.++.+ .+++ .++...+.. .+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++++.+.+.+.
T Consensus 120 ~i~G~~--~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~ 197 (385)
T 3klj_A 120 KVPHAD--EIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDK 197 (385)
T ss_dssp CCTTCS--CEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHH
T ss_pred CCCCCC--CeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHH
Confidence 665544 3443 445444432 2789999999999999999999999999999999999985 899999999999
Q ss_pred HHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCC
Q psy9583 621 LNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDN 700 (866)
Q Consensus 621 l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~ 700 (866)
+++.||++++++.++++ |. ++++|.|++|+|++|++++ ++.+|++.+ +| |.||++
T Consensus 198 l~~~gV~~~~~~~v~~i---------------g~------~~~~D~vv~a~G~~p~~~~--~~~~gl~~~-~g-i~vd~~ 252 (385)
T 3klj_A 198 LDRLGIKIYTNSNFEEM---------------GD------LIRSSCVITAVGVKPNLDF--IKDTEIASK-RG-ILVNDH 252 (385)
T ss_dssp HHTTTCEEECSCCGGGC---------------HH------HHHHSEEEECCCEEECCGG--GTTSCCCBS-SS-EEECTT
T ss_pred HHhCCCEEEeCCEEEEc---------------Ce------EEecCeEEECcCcccChhh--hhhcCCCcC-CC-EEECCC
Confidence 99999999999988765 22 6889999999999999988 578888886 56 999999
Q ss_pred CCCCCCCEEEecccCC----CCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEE--EccCceeeeecCHHHHHhcCCcE
Q psy9583 701 CETNIPNIYAIGDVVR----GPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVI--YTFPEIASVGKTEQYLKKHNISY 774 (866)
Q Consensus 701 l~Ts~~~VyA~GD~a~----~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~~~~a~vGl~e~~a~~~~~~~ 774 (866)
|+|++|+|||+|||+. .+.+++.|..||++||.||+|...++.. ..|+++ +++++++++|+++.+. .+.
T Consensus 253 ~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~~~----~~~ 327 (385)
T 3klj_A 253 METSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNACGEDASYSE-IIPSPILKVSGISIISCGDIENNK----PSK 327 (385)
T ss_dssp CBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHHTTCCCCCCC-CCCCCEEEETTEEEEEESCCTTCC----CSE
T ss_pred cccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHhcCCCcCCCC-CCCcEEEEeCCCcEEEEcCCCCCC----CeE
Confidence 9999999999999997 4678999999999999999998765432 245554 5899999999997642 121
Q ss_pred EEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHHH
Q psy9583 775 NVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854 (866)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~ 854 (866)
.. . ..+..+|.|++++ +|+|+|++++|+.+.++ .+..+|+++.++++| ||++|.|.+
T Consensus 328 ~~-~-----------~~~~~~~~~~~~~--~~~l~g~~~~g~~~~~~--~~~~~i~~~~~~~~~-------~~~~E~~~~ 384 (385)
T 3klj_A 328 VF-R-----------STQEDKYIVCMLK--ENKIDAAAVIGDVSLGT--KLKKAIDSSKSFDNI-------SSLDAILNN 384 (385)
T ss_dssp EE-E-----------EECSSCEEEEEEE--TTEEEEEEEESCHHHHH--HHHHHHHTTCBCSCC-------SCHHHHHTT
T ss_pred EE-E-----------ECCCCeEEEEEEE--CCEEEEEEEECCcHHHH--HHHHHHHcCCCcccc-------cCHHHHHhh
Confidence 11 1 1235679999995 68999999999986665 689999999999999 999999863
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=385.48 Aligned_cols=333 Identities=23% Similarity=0.352 Sum_probs=249.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
-|++|||||+||++||..|++.| +|+|||+++. .+- ++.++. ..+ . +.
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~------~~~---------~~~~l~-----~~~----~--g~----- 56 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPV------PYY---------SKPMLS-----HYI----A--GF----- 56 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSS------CCC---------CSTTHH-----HHH----T--TS-----
T ss_pred CcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCC------Ccc---------ccchhH-----HHH----h--CC-----
Confidence 58999999999999999999999 9999999731 110 111110 000 0 00
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEE-EEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA-IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~-v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
.++..+. .....++++.+++++.++. ..++. ..+.+. .++.++.||+||||||++|+.|+.
T Consensus 57 -~~~~~~~-----------~~~~~~~~~~~v~~~~g~~v~~id~---~~~~V~---~~g~~~~~d~lViATGs~p~~p~i 118 (367)
T 1xhc_A 57 -IPRNRLF-----------PYSLDWYRKRGIEIRLAEEAKLIDR---GRKVVI---TEKGEVPYDTLVLATGARAREPQI 118 (367)
T ss_dssp -SCGGGGC-----------SSCHHHHHHHTEEEECSCCEEEEET---TTTEEE---ESSCEEECSEEEECCCEEECCCCS
T ss_pred -CCHHHhc-----------cCCHHHHHhCCcEEEECCEEEEEEC---CCCEEE---ECCcEEECCEEEECCCCCCCCCCC
Confidence 1111110 1123345667999999864 44654 234443 346789999999999999987765
Q ss_pred CcCCCceEec---chhhhcccc---CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH
Q psy9583 550 VKFDENLILS---NKGALEMIN---VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK 623 (866)
Q Consensus 550 ~~~~~~~~~t---~~~~~~~~~---~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~ 623 (866)
++ ...+++ .+++..+.. .+++++|||+|++|+|+|..|+++|.+|+++++.+++++ +++++.+.+.+.|++
T Consensus 119 ~G--~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~ 195 (367)
T 1xhc_A 119 KG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEE 195 (367)
T ss_dssp BT--GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHH
T ss_pred CC--cCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHH
Confidence 54 233443 344444322 358999999999999999999999999999999999999 999999999999999
Q ss_pred cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCC
Q psy9583 624 QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCET 703 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~T 703 (866)
.||+++++++|++++ .+. +.+. +| . +++|.|++|+|++|++++ ++++|++.+ +| |.||++|||
T Consensus 196 ~gV~i~~~~~v~~i~--~~~--v~~~--~g------~-i~~D~vi~a~G~~p~~~l--l~~~gl~~~-~g-i~Vd~~~~t 258 (367)
T 1xhc_A 196 TGVKFFLNSELLEAN--EEG--VLTN--SG------F-IEGKVKICAIGIVPNVDL--ARRSGIHTG-RG-ILIDDNFRT 258 (367)
T ss_dssp TTEEEECSCCEEEEC--SSE--EEET--TE------E-EECSCEEEECCEEECCHH--HHHTTCCBS-SS-EECCTTSBC
T ss_pred CCCEEEcCCEEEEEE--eeE--EEEC--CC------E-EEcCEEEECcCCCcCHHH--HHhCCCCCC-CC-EEECCCccc
Confidence 999999999999987 222 3342 33 2 899999999999999985 688889886 56 999999999
Q ss_pred CCCCEEEecccCCC----CCcHHHHHHHHHHHHHHHhCCCCCCCCCCccE--EEEccCceeeeecCHHHHHhcCCcEEEE
Q psy9583 704 NIPNIYAIGDVVRG----PMLAHKAEEEGIMVAEHISGQKHSINFNALPF--VIYTFPEIASVGKTEQYLKKHNISYNVG 777 (866)
Q Consensus 704 s~~~VyA~GD~a~~----~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~~~~a~vGl~e~~a~~~~~~~~~~ 777 (866)
+.|+|||+|||+.. +++++.|.+||++||+||++...++++ .+|+ +.|++|+++++|++++++. +
T Consensus 259 ~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g~~~~~~~-~~~~~~~~~~~~~~~~vG~~~~~~~----~---- 329 (367)
T 1xhc_A 259 SAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGEPRRYNF-KFRSTVFKFGKLQIAIIGNTKGEGK----W---- 329 (367)
T ss_dssp SSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTTCCCCCCS-SCCEEEEEETTEEEEEEECCSSCEE----E----
T ss_pred CCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcCCCccCCC-CCCceEEEECCceEEEECCCCCCCc----c----
Confidence 99999999999842 468999999999999999997666554 3343 4799999999999988532 1
Q ss_pred EEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChH
Q psy9583 778 IFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMAS 819 (866)
Q Consensus 778 ~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~ 819 (866)
+ .+|+|++++ +++|+|++++|+.+.
T Consensus 330 -~--------------~~~~k~~~~--~~~ilG~~~~g~~~~ 354 (367)
T 1xhc_A 330 -I--------------EDNTKVFYE--NGKIIGAVVFNDIRK 354 (367)
T ss_dssp -E--------------ETTEEEEC-------CEEEEESCHHH
T ss_pred -c--------------ceEEEEEEE--CCEEEEEEEECChHH
Confidence 1 578999997 489999999999743
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=378.84 Aligned_cols=380 Identities=18% Similarity=0.240 Sum_probs=283.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCC--eEEEEeccCC-CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGF--KTACIDEWKD-NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~--~V~liek~~~-~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
.+||+|||||+||++||..|++.|+ +|+|||+++. ||.+.. .++.++ .....
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~-----------l~~~~~--------------~~~~~ 58 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPP-----------LSKAYL--------------AGKAT 58 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGG-----------GGTTTT--------------TTCSC
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCC-----------CcHHHh--------------CCCCC
Confidence 5899999999999999999999998 7999998731 111100 011000 00000
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
... +......++++.+++++.++.+. ++. ..+.+.+ .++..+.||+||+|||+.|+
T Consensus 59 ~~~------------------~~~~~~~~~~~~gv~~~~~~~v~~i~~---~~~~v~~--~~g~~~~~d~lviAtG~~p~ 115 (431)
T 1q1r_A 59 AES------------------LYLRTPDAYAAQNIQLLGGTQVTAINR---DRQQVIL--SDGRALDYDRLVLATGGRPR 115 (431)
T ss_dssp SGG------------------GBSSCHHHHHHTTEEEECSCCEEEEET---TTTEEEE--TTSCEEECSEEEECCCEEEC
T ss_pred hHH------------------hcccCHHHHHhCCCEEEeCCEEEEEEC---CCCEEEE--CCCCEEECCEEEEcCCCCcc
Confidence 000 00011234567899999987644 543 3345544 55678999999999999988
Q ss_pred CCCCCcCCCce---E---ecchhhhccc---cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-ccHHHHH
Q psy9583 546 SFPGVKFDENL---I---LSNKGALEMI---NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAK 615 (866)
Q Consensus 546 ~~p~~~~~~~~---~---~t~~~~~~~~---~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~ 615 (866)
.++.++.+... + .+.+++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+
T Consensus 116 ~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~ 195 (431)
T 1q1r_A 116 PLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSA 195 (431)
T ss_dssp CCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHH
T ss_pred CCCCCCcccCCCceEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHH
Confidence 76544332212 3 2455554443 35899999999999999999999999999999999999874 8999999
Q ss_pred HHHHHHHHcCCEEEeCceEEEEEE--cCCeE-EEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCC
Q psy9583 616 KAFHLLNKQGLNIILNTKIHDIKI--NKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNEN 692 (866)
Q Consensus 616 ~l~~~l~~~GV~i~~~~~v~~i~~--~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~ 692 (866)
.+.+.+++.||++++++.+++++. +++.+ .+.+. +|. .+++|.||+|+|++|++++ ++.+|++++ +
T Consensus 196 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~--~G~------~i~~D~Vv~a~G~~p~~~l--~~~~gl~~~-~ 264 (431)
T 1q1r_A 196 FYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCE--DGT------RLPADLVIAGIGLIPNCEL--ASAAGLQVD-N 264 (431)
T ss_dssp HHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEET--TSC------EEECSEEEECCCEEECCHH--HHHTTCCBS-S
T ss_pred HHHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeC--CCC------EEEcCEEEECCCCCcCcch--hhccCCCCC-C
Confidence 999999999999999999999987 44444 45443 665 7999999999999999986 678889886 5
Q ss_pred CcEEeCCCCCCCCCCEEEecccCCCC----------CcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEE--EccCceeee
Q psy9583 693 NFIIVNDNCETNIPNIYAIGDVVRGP----------MLAHKAEEEGIMVAEHISGQKHSINFNALPFVI--YTFPEIASV 760 (866)
Q Consensus 693 G~i~Vd~~l~Ts~~~VyA~GD~a~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~~~~a~v 760 (866)
| |.||+++||++|+|||+|||+..+ ..++.|..||++||.||+|... +|..+|+++ +.+.++.++
T Consensus 265 g-i~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~--~~~~~p~~~~~~~~~~~~~~ 341 (431)
T 1q1r_A 265 G-IVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAILCGKVP--RDEAAPWFWSDQYEIGLKMV 341 (431)
T ss_dssp S-EECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTCCC--CCCCCCEEEEEETTEEEEEE
T ss_pred C-EEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHHHHHHHHHHHhcCCCC--CCCCCCeEEEEECCceEEEE
Confidence 6 999999999999999999999753 2578999999999999998764 356688764 345789999
Q ss_pred ecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCCCHHHHcc
Q psy9583 761 GKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIAR 840 (866)
Q Consensus 761 Gl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~ 840 (866)
|+++.. .++.+ ... .+...|++++. ++++|+|++++|+.+.+++....++++.+++.++|.+
T Consensus 342 G~~~~~-----~~~~~-~~~----------~~~~~~~~~~~--~~~~l~G~~~~g~~~~~~~~~~~i~~~~~~~~~~l~~ 403 (431)
T 1q1r_A 342 GLSEGY-----DRIIV-RGS----------LAQPDFSVFYL--QGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGD 403 (431)
T ss_dssp ECCTTC-----SEEEE-EEE----------TTTTEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHHTTCCCCHHHHTC
T ss_pred eCCCCC-----CEEEE-Ecc----------CCCCeEEEEEE--eCCEEEEEEEECChHHHHHHHHHHHCCCCCCHHHhhC
Confidence 998631 11211 110 12346776654 4799999999999999999999999999999999988
Q ss_pred ccccCCChh
Q psy9583 841 ICHVHPSLS 849 (866)
Q Consensus 841 ~~~~~Pt~~ 849 (866)
..+++..+.
T Consensus 404 ~~~~~~~~~ 412 (431)
T 1q1r_A 404 ESVPLKEII 412 (431)
T ss_dssp TTSCHHHHH
T ss_pred CCCCHHHHH
Confidence 877655543
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-40 Score=368.68 Aligned_cols=364 Identities=19% Similarity=0.268 Sum_probs=270.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCC--eEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGF--KTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~--~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
++||+|||||+||++||..|++.|. +|+|||+++ .++ +..|..++.++.. .. .
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~------~~~----~~~~~~~~~~~~~--------------~~-~ 61 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA------ERP----YDRPPLSKDFMAH--------------GD-A 61 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC------SCC----BCSGGGGTHHHHH--------------CC-G
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCC------CCc----ccCCCCCHHHhCC--------------Cc-h
Confidence 5899999999999999999999997 499999973 221 0001111111100 00 0
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEE-EEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA-IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~-v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.... +. ++++.+++++.++. ..++. ..+.+.+ .++..+.||+||+|||+.|..
T Consensus 62 ~~~~--------------------~~-~~~~~~v~~~~~~~v~~i~~---~~~~v~~--~~g~~~~~d~lviAtG~~~~~ 115 (408)
T 2gqw_A 62 EKIR--------------------LD-CKRAPEVEWLLGVTAQSFDP---QAHTVAL--SDGRTLPYGTLVLATGAAPRA 115 (408)
T ss_dssp GGSB--------------------CC-CTTSCSCEEEETCCEEEEET---TTTEEEE--TTSCEEECSEEEECCCEEECC
T ss_pred hhhh--------------------HH-HHHHCCCEEEcCCEEEEEEC---CCCEEEE--CCCCEEECCEEEECCCCCCCC
Confidence 0000 00 24567999999874 44554 3355554 456789999999999999887
Q ss_pred CCC-CcCCCceEe---cchhhhccc---cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHH
Q psy9583 547 FPG-VKFDENLIL---SNKGALEMI---NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAF 618 (866)
Q Consensus 547 ~p~-~~~~~~~~~---t~~~~~~~~---~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~ 618 (866)
|+. ++.+ ..++ +.+++..+. ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.
T Consensus 116 ~~i~~G~~-~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~ 194 (408)
T 2gqw_A 116 LPTLQGAT-MPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVA 194 (408)
T ss_dssp CGGGTTCS-SCEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHH
T ss_pred CCccCCCC-CcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHH
Confidence 655 4433 3333 455554443 2479999999999999999999999999999999999998 58999999999
Q ss_pred HHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeC
Q psy9583 619 HLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVN 698 (866)
Q Consensus 619 ~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd 698 (866)
+.|++.||++++++.|++++ + + .+.+. +|. ++++|.|++|+|++|++++ ++.+|++++ +| |.||
T Consensus 195 ~~l~~~GV~i~~~~~v~~i~-~-~--~v~~~--~g~------~i~~D~vi~a~G~~p~~~l--~~~~gl~~~-~g-i~Vd 258 (408)
T 2gqw_A 195 RYHAAQGVDLRFERSVTGSV-D-G--VVLLD--DGT------RIAADMVVVGIGVLANDAL--ARAAGLACD-DG-IFVD 258 (408)
T ss_dssp HHHHHTTCEEEESCCEEEEE-T-T--EEEET--TSC------EEECSEEEECSCEEECCHH--HHHHTCCBS-SS-EECC
T ss_pred HHHHHcCcEEEeCCEEEEEE-C-C--EEEEC--CCC------EEEcCEEEECcCCCccHHH--HHhCCCCCC-CC-EEEC
Confidence 99999999999999999998 3 3 44443 665 8999999999999999987 678888886 56 9999
Q ss_pred CCCCCCCCCEEEecccCCCC----------CcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEE--EccCceeeeecCHHH
Q psy9583 699 DNCETNIPNIYAIGDVVRGP----------MLAHKAEEEGIMVAEHISGQKHSINFNALPFVI--YTFPEIASVGKTEQY 766 (866)
Q Consensus 699 ~~l~Ts~~~VyA~GD~a~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~~~~a~vGl~e~~ 766 (866)
+++||++|+|||+|||+..+ .+++.|..||++||.||++.... +|..+|+++ +++++++++|+ +.
T Consensus 259 ~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~~~-~~~~~p~~~~~~~~~~~~~~G~-~~- 335 (408)
T 2gqw_A 259 AYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLVDPTAP-GYAELPWYWSDQGALRIQVAGL-AS- 335 (408)
T ss_dssp TTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHHCTTSC-CCCCCCEEEEEETTEEEEEEEC-SC-
T ss_pred CCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhcCCCCC-cCCCCCeEEEEECCceEEEECC-CC-
Confidence 99999999999999999753 26899999999999999987651 466688765 45689999998 22
Q ss_pred HHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCC--CHHHHccc
Q psy9583 767 LKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRA--SSEDIARI 841 (866)
Q Consensus 767 a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~--~~~~l~~~ 841 (866)
..++.+ . .. ......+|++++++ +++|+|++++|+.+ .+..+..+|+++. +..+|.+.
T Consensus 336 ----~~~~~~-~---~~-----~~~~~~~~~~~~~~--~~~l~G~~~~g~~~--~~~~~~~~i~~~~~~~~~~l~~~ 395 (408)
T 2gqw_A 336 ----GDEEIV-R---GE-----VSLDAPKFTLIELQ--KGRIVGATCVNNAR--DFAPLRRLLAVGAKPDRAALADP 395 (408)
T ss_dssp ----CSEEEE-E---SC-----CCSSSCCEEEEEEE--TTEEEEEEEESCHH--HHHHHHHHHHTTCCCCHHHHHCT
T ss_pred ----CCEEEE-E---cc-----CCCCCCeEEEEEEe--CCEEEEEEEECChH--HHHHHHHHHHCCCCCChHHhcCC
Confidence 111111 0 00 00114568888875 79999999999874 3578899999998 44555544
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=357.36 Aligned_cols=371 Identities=20% Similarity=0.289 Sum_probs=273.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCe--EEEEeccCC-CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFK--TACIDEWKD-NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~--V~liek~~~-~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
+++||+|||||+||++||.+|++.|++ |+|||+++. ||.++.+. +. +.....
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~-----------~~--------------~~~~~~ 62 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLS-----------KE--------------YLAREK 62 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGG-----------TT--------------TTTTSS
T ss_pred CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCC-----------HH--------------HHcCCC
Confidence 358999999999999999999999987 999999732 11111110 00 000000
Q ss_pred cccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEE-EEeccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 466 NTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA-IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~-v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
.... +......++++.+++++.++. ..++. ..+.+.+ .++..+.||+||+|||+.|
T Consensus 63 ~~~~------------------~~~~~~~~~~~~~i~~~~~~~v~~id~---~~~~v~~--~~g~~~~~d~lvlAtG~~~ 119 (415)
T 3lxd_A 63 TFER------------------ICIRPAQFWEDKAVEMKLGAEVVSLDP---AAHTVKL--GDGSAIEYGKLIWATGGDP 119 (415)
T ss_dssp CSGG------------------GBSSCHHHHHHTTEEEEETCCEEEEET---TTTEEEE--TTSCEEEEEEEEECCCEEC
T ss_pred CHHH------------------hccCCHHHHHHCCcEEEeCCEEEEEEC---CCCEEEE--CCCCEEEeeEEEEccCCcc
Confidence 0000 001123456678999999844 44554 3344444 5677899999999999999
Q ss_pred cCCCCCcCCCceEe---cchhhhccc---cC-CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHH
Q psy9583 545 RSFPGVKFDENLIL---SNKGALEMI---NV-PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKK 616 (866)
Q Consensus 545 ~~~p~~~~~~~~~~---t~~~~~~~~---~~-~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~ 616 (866)
+.++.++.+...++ +.+++..+. .. +++++|||+|++|+|+|..+.+.|.+|+++++.+++++ .+++++.+.
T Consensus 120 ~~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~ 199 (415)
T 3lxd_A 120 RRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEF 199 (415)
T ss_dssp CCCBTTSSCCBTEECCCSHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHH
T ss_pred CCCCCCCccccCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHH
Confidence 87765554434444 444444333 23 89999999999999999999999999999999999987 579999999
Q ss_pred HHHHHHHcCCEEEeCceEEEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcE
Q psy9583 617 AFHLLNKQGLNIILNTKIHDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI 695 (866)
Q Consensus 617 l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 695 (866)
+.+.+++.||++++++.|+++..+++.+ .+.+. +|. ++++|.||+|+|++|++++ ++.+|++++ +| |
T Consensus 200 l~~~l~~~GV~i~~~~~v~~i~~~~~~v~~v~l~--dG~------~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~g-i 267 (415)
T 3lxd_A 200 YQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQ--DGS------VIPADIVIVGIGIVPCVGA--LISAGASGG-NG-V 267 (415)
T ss_dssp HHHHHHHTTCEEEETCCEEEEEESSSBEEEEEES--SSC------EEECSEEEECSCCEESCHH--HHHTTCCCS-SS-E
T ss_pred HHHHHHhCCCEEEECCEEEEEEecCCcEEEEEeC--CCC------EEEcCEEEECCCCccChHH--HHhCCCCcC-CC-E
Confidence 9999999999999999999999876554 45554 665 8999999999999999987 678889887 56 9
Q ss_pred EeCCCCCCCCCCEEEecccCCCCC-----------cHHHHHHHHHHHHHHHhCCCCCCCCCCccEEE--EccCceeeeec
Q psy9583 696 IVNDNCETNIPNIYAIGDVVRGPM-----------LAHKAEEEGIMVAEHISGQKHSINFNALPFVI--YTFPEIASVGK 762 (866)
Q Consensus 696 ~Vd~~l~Ts~~~VyA~GD~a~~~~-----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~~~~a~vGl 762 (866)
.||++++|++|+|||+|||+..+. +++.|..||++||+||+|.... |..+|+++ +++..+..+|+
T Consensus 268 ~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~--~~~~p~~~~~~~~~~~~~~G~ 345 (415)
T 3lxd_A 268 DVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPVP--YKATPWFWSNQYDLKLQTVGL 345 (415)
T ss_dssp ECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHHHHHHHHHHHTTCCCC--CCCCCEEEEEETTEEEEEEEC
T ss_pred EECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHHHHHHHHHHhcCCCCC--CCCCCeeEeeeCCcEEEEEeC
Confidence 999999999999999999997543 4799999999999999998654 66777654 56788999998
Q ss_pred CHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCC--CCHHHHcc
Q psy9583 763 TEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFR--ASSEDIAR 840 (866)
Q Consensus 763 ~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~--~~~~~l~~ 840 (866)
++.. .++.+ ... .+...|.+++++ +++|+|+..+|.... ...+..+|..+ ++.++|++
T Consensus 346 ~~~~-----~~~~~-~~~----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ 405 (415)
T 3lxd_A 346 STGH-----DNAVL-RGD----------PATRSFSVVYLK--GGKVVALDCVNMVKD--YVQGKKLVEARAQIAPEQLAD 405 (415)
T ss_dssp CTTC-----SEEEE-EEE----------GGGTEEEEEEEE--TTEEEEEEEESCHHH--HHHHHHHHHHTCCCCHHHHTC
T ss_pred CCCC-----CEEEE-Eec----------CCCCeEEEEEEE--CCEEEEEEEECChHH--HHHHHHHHHCCCCCCHHHhcC
Confidence 7431 11111 111 124578898885 689999999998632 33455566655 45566654
Q ss_pred c
Q psy9583 841 I 841 (866)
Q Consensus 841 ~ 841 (866)
.
T Consensus 406 ~ 406 (415)
T 3lxd_A 406 A 406 (415)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=362.91 Aligned_cols=368 Identities=22% Similarity=0.280 Sum_probs=269.9
Q ss_pred cceeeecCCccHHHHHHHHHHCCCe--EEEEeccCC-CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFK--TACIDEWKD-NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~--V~liek~~~-~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+||+|||||+||++||..|++.|++ |+|||+++. ||.++.+ ++.+ .......
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l-----------~~~~--------------~~g~~~~ 57 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSL-----------SKAV--------------LDGSLER 57 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGG-----------GTHH--------------HHTSSSS
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccc-----------cHHH--------------hCCCCCH
Confidence 6899999999999999999999987 999999732 1111100 0000 0000111
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEE-EEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA-IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~-v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
... .. ...++++.+++++.++. ..++. ..+.+.+ .++.++.||+||+|||+.|+.
T Consensus 58 ~~~-~~------------------~~~~~~~~~i~~~~~~~v~~id~---~~~~v~~--~~g~~~~~d~lvlAtG~~p~~ 113 (410)
T 3ef6_A 58 PPI-LA------------------EADWYGEARIDMLTGPEVTALDV---QTRTISL--DDGTTLSADAIVIATGSRART 113 (410)
T ss_dssp CCB-SS------------------CTTHHHHTTCEEEESCCEEEEET---TTTEEEE--TTSCEEECSEEEECCCEEECC
T ss_pred HHh-cC------------------CHHHHHHCCCEEEeCCEEEEEEC---CCCEEEE--CCCCEEECCEEEEccCCcccC
Confidence 000 00 12245668999999944 44554 3344444 567789999999999999987
Q ss_pred CCCCcCCCceEe---cchhhhccc---cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHHH
Q psy9583 547 FPGVKFDENLIL---SNKGALEMI---NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFH 619 (866)
Q Consensus 547 ~p~~~~~~~~~~---t~~~~~~~~---~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~ 619 (866)
|+.++.....++ +.+++..+. ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.+
T Consensus 114 ~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~ 193 (410)
T 3ef6_A 114 MALPGSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRG 193 (410)
T ss_dssp CCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHH
T ss_pred CCCCCccccceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHH
Confidence 755544433444 444444433 3479999999999999999999999999999999999986 589999999999
Q ss_pred HHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND 699 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~ 699 (866)
.+++.||++++++.|++++.++....+.+. +|+ ++++|.||+|+|++|++++ ++.+|++++ +| |.||+
T Consensus 194 ~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~--dg~------~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~g-i~vd~ 261 (410)
T 3ef6_A 194 LLTELGVQVELGTGVVGFSGEGQLEQVMAS--DGR------SFVADSALICVGAEPADQL--ARQAGLACD-RG-VIVDH 261 (410)
T ss_dssp HHHHHTCEEECSCCEEEEECSSSCCEEEET--TSC------EEECSEEEECSCEEECCHH--HHHTTCCBS-SS-EECCT
T ss_pred HHHHCCCEEEeCCEEEEEeccCcEEEEEEC--CCC------EEEcCEEEEeeCCeecHHH--HHhCCCccC-Ce-EEEcc
Confidence 999999999999999999876544345554 665 8999999999999999987 688899987 55 99999
Q ss_pred CCCCCCCCEEEecccCCCC---------CcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEE--EccCceeeeecCHHHHH
Q psy9583 700 NCETNIPNIYAIGDVVRGP---------MLAHKAEEEGIMVAEHISGQKHSINFNALPFVI--YTFPEIASVGKTEQYLK 768 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~~~~a~vGl~e~~a~ 768 (866)
+++|++|+|||+|||+..+ ..++.|..||++||+||+|.... |..+|+++ +++..+..+|+++..
T Consensus 262 ~~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~--~~~~p~~~~~~~~~~~~~~G~~~~~-- 337 (410)
T 3ef6_A 262 CGATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAAILGKNVS--APQLPVSWTEIAGHRMQMAGDIEGP-- 337 (410)
T ss_dssp TSBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHHHTTCCCC--CCBCCEEEEEETTEEEEEESCSSSS--
T ss_pred CeeECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHHHcCCCCC--CCCCCeeEEEECCceEEEEcCCCCC--
Confidence 9999999999999999754 24899999999999999998644 56677654 567889999987541
Q ss_pred hcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCC--CCHHHHccc
Q psy9583 769 KHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFR--ASSEDIARI 841 (866)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~--~~~~~l~~~ 841 (866)
.++.+ . .+ .+...|.+++++ +++|+|++++|..... ..+..+|..+ ++.++|++.
T Consensus 338 ---~~~~~-~---~~-------~~~~~~~~~~~~--~~~l~g~~~~~~~~~~--~~~~~~i~~~~~~~~~~l~~~ 394 (410)
T 3ef6_A 338 ---GDFVS-R---GM-------PGSGAALLFRLQ--ERRIQAVVAVDAPRDF--ALATRLVEARAAIEPARLADL 394 (410)
T ss_dssp ---SEEEE-E---SC-------TTSSSEEEEEEE--TTEEEEEEEESCHHHH--HHHHHHHHHTCBCCHHHHHCT
T ss_pred ---CEEEE-E---ee-------CCCCeEEEEEEE--CCEEEEEEEECChHHH--HHHHHHHhCCCCCCHHHhcCC
Confidence 11111 0 00 123457777774 7899999999996333 3344555555 566677654
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=350.63 Aligned_cols=368 Identities=21% Similarity=0.287 Sum_probs=271.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCC--eEEEEeccCC-CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGF--KTACIDEWKD-NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~--~V~liek~~~-~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+||+|||||+||++||.+|++.|+ +|+|||+++. ||.++.+ ++. +.......
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l-----------~~~--------------~l~~~~~~ 56 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPL-----------SKA--------------YLKSGGDP 56 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGG-----------GTG--------------GGGSCCCT
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccC-----------CHH--------------HHCCCCCH
Confidence 689999999999999999999998 8999999731 1111110 000 00000011
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
..... ....++.+.+++++......++. ..+.+.+ .++..+.||+||+|||+.|+.+
T Consensus 57 ~~~~~------------------~~~~~~~~~~i~~~~~~v~~id~---~~~~v~~--~~g~~~~~d~lvlAtG~~p~~~ 113 (404)
T 3fg2_P 57 NSLMF------------------RPEKFFQDQAIELISDRMVSIDR---EGRKLLL--ASGTAIEYGHLVLATGARNRML 113 (404)
T ss_dssp TSSBS------------------SCHHHHHHTTEEEECCCEEEEET---TTTEEEE--SSSCEEECSEEEECCCEEECCC
T ss_pred HHccC------------------CCHHHHHhCCCEEEEEEEEEEEC---CCCEEEE--CCCCEEECCEEEEeeCCCccCC
Confidence 00111 12334667899998854444554 3344444 5677899999999999998877
Q ss_pred CCCcCCCceEe---cchhhhccc---cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHHHH
Q psy9583 548 PGVKFDENLIL---SNKGALEMI---NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHL 620 (866)
Q Consensus 548 p~~~~~~~~~~---t~~~~~~~~---~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~ 620 (866)
+.++.+...++ +.++...+. ..+++++|||+|++|+|+|..+.+.|.+|+++++.+++++ .+++++.+.+.+.
T Consensus 114 ~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~ 193 (404)
T 3fg2_P 114 DVPNASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDR 193 (404)
T ss_dssp CSTTTTSTTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHH
T ss_pred CCCCCCCCcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHH
Confidence 65554444444 333433332 3579999999999999999999999999999999999987 5899999999999
Q ss_pred HHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC
Q psy9583 621 LNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND 699 (866)
Q Consensus 621 l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~ 699 (866)
+++.||++++++.|+++..+++.+. +.+. +|+ ++++|.||+|+|++|++++ ++.+|++++ +| |.||+
T Consensus 194 l~~~GV~i~~~~~v~~i~~~~~~v~~V~~~--dG~------~i~aD~Vv~a~G~~p~~~l--~~~~gl~~~-~G-i~vd~ 261 (404)
T 3fg2_P 194 HSGAGIRMHYGVRATEIAAEGDRVTGVVLS--DGN------TLPCDLVVVGVGVIPNVEI--AAAAGLPTA-AG-IIVDQ 261 (404)
T ss_dssp HHHTTCEEECSCCEEEEEEETTEEEEEEET--TSC------EEECSEEEECCCEEECCHH--HHHTTCCBS-SS-EEECT
T ss_pred HHhCCcEEEECCEEEEEEecCCcEEEEEeC--CCC------EEEcCEEEECcCCccCHHH--HHhCCCCCC-CC-EEECC
Confidence 9999999999999999988765543 4443 665 8999999999999999987 678899887 56 99999
Q ss_pred CCCCCCCCEEEecccCCCCC----------cHHHHHHHHHHHHHHHhCCCCCCCCCCccEEE--EccCceeeeecCHHHH
Q psy9583 700 NCETNIPNIYAIGDVVRGPM----------LAHKAEEEGIMVAEHISGQKHSINFNALPFVI--YTFPEIASVGKTEQYL 767 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~--~~~~~~a~vGl~e~~a 767 (866)
+++|++|+|||+|||+..+. .++.|..||++||+||+|.... |..+|+++ +++..+..+|++..
T Consensus 262 ~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~g~~~~--~~~~p~~~~~~~~~~~~~~G~~~~-- 337 (404)
T 3fg2_P 262 QLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVAARLTGDAKP--YDGYPWFWSDQGDDKLQIVGLTAG-- 337 (404)
T ss_dssp TSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHHHHTTTCCCC--CCCCCEEEEEETTEEEEEEECCTT--
T ss_pred CcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHHHHhCCCCCC--CCCCCceEeEECCcEEEEEeCCCC--
Confidence 99999999999999997432 4899999999999999998644 66677654 66778999998742
Q ss_pred HhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHHHHHHHCCC--CHHHHcc
Q psy9583 768 KKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRA--SSEDIAR 840 (866)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~~~~i~~~~--~~~~l~~ 840 (866)
.+-.+.... .+...|.+++++ +++|+|+.++|.. .....+..+|..+. +.++|++
T Consensus 338 ----~~~~~~~~~----------~~~~~~~~~~~~--~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~ 394 (404)
T 3fg2_P 338 ----FDQVVIRGS----------VAERSFSAFCYK--AGKLIGIESVNRA--ADHVFGRKILPLDKSVTPEQAAD 394 (404)
T ss_dssp ----CCEEEEEEE----------TTTTEEEEEEEE--TTEEEEEEEESCH--HHHHHHHHHTTTTCCCCHHHHHC
T ss_pred ----CCEEEEEec----------CCCCcEEEEEEE--CCEEEEEEEeCCH--HHHHHHHHHHHcCCCCCHHHhcC
Confidence 111111111 134578999885 6899999999986 33445666776664 4455543
|
| >2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-40 Score=398.50 Aligned_cols=199 Identities=26% Similarity=0.407 Sum_probs=166.3
Q ss_pred HHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeCC----eeEEccc
Q psy9583 185 RLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGN----NIIYHKY 260 (866)
Q Consensus 185 ~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~~----~~~~~~~ 260 (866)
+|++|+ ++||+|++.++|+|+|+++|+++|+.+.+..|.|+|+++||+||+++||++||+||++|+++ .++++++
T Consensus 1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~ 79 (1113)
T 2xt6_A 1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH 79 (1113)
T ss_dssp -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence 588896 79999999999999999999999987777778999999999999999999999999999854 7999999
Q ss_pred eeEEEEEecC--Cc---eEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCccccccccCCC
Q psy9583 261 YDIGIAISSS--RG---LVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPP 335 (866)
Q Consensus 261 ~~i~~av~~~--~g---l~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~~~ii~~p 335 (866)
+||||||+++ +| |+|||||||+++|+.+|+++++++++++|+|+|+++|++||||||||+||+|+.+|+||||||
T Consensus 80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinpp 159 (1113)
T 2xt6_A 80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG 159 (1113)
T ss_dssp CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTT
T ss_pred ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCC
Confidence 9999999997 66 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccceeeEEEeC------CeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 336 QSAILGVHAIKKRVIVEN------NNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 336 ~~~il~vg~~~~~~~~~~------~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|+|||++|++.++|++.+ |+++++++|++++++|||++||+++++|+..
T Consensus 160 q~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~ 214 (1113)
T 2xt6_A 160 QGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRT 214 (1113)
T ss_dssp CSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred CceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHH
Confidence 999999999999998865 5799999999999999999999999877643
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=334.66 Aligned_cols=292 Identities=22% Similarity=0.273 Sum_probs=212.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+||||||||++||.+|++.|++|+|||+. .+||+|.+.+|+|...- +.
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-------~~gG~~~~~~~i~~~p~----------------~~----- 57 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-------IPGGQMANTEEVENFPG----------------FE----- 57 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------CTTGGGGGCSCBCCSTT----------------CS-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-------CCCCeeecccccCCcCC----------------cc-----
Confidence 599999999999999999999999999999984 78999999999864210 00
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
.....++..+ ......+.+..+..+....... ......+ ..++.++.||+||||||++|+.|+.
T Consensus 58 -~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~d~liiAtGs~~~~~~i 121 (312)
T 4gcm_A 58 -MITGPDLSTK-----------MFEHAKKFGAVYQYGDIKSVED---KGEYKVI-NFGNKELTAKAVIIATGAEYKKIGV 121 (312)
T ss_dssp -SBCHHHHHHH-----------HHHHHHHTTCEEEECCCCEEEE---CSSCEEE-ECSSCEEEEEEEEECCCEEECCCCC
T ss_pred -ccchHHHHHH-----------HHHHHhhccccccceeeeeeee---eecceee-ccCCeEEEeceeEEcccCccCcCCC
Confidence 0111122111 1223445566655554433211 1122222 2456789999999999999987755
Q ss_pred CcCCC---ceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 550 VKFDE---NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 550 ~~~~~---~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
++... ..+............+++++|||||++|+|+|..|+++|.+||++++.+++++.... ..+.+++.++
T Consensus 122 pG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~-----~~~~~~~~~~ 196 (312)
T 4gcm_A 122 PGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRIL-----QDRAFKNDKI 196 (312)
T ss_dssp TTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHH-----HHHHHHCTTE
T ss_pred CChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhH-----HHHHHHhcCc
Confidence 54322 233333333333445799999999999999999999999999999999998764322 2456677888
Q ss_pred EEEeCceEEEEEEcCCeEEEE--EeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLIN--YSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~--~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
.+.....+..+...+...... ....++ ....+++|.|++++|++|+..+ ++..++.. ++|+|.||++||||
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~v~~~~g~~~~~~~--~~~~g~~~-~~G~I~vd~~~~Ts 269 (312)
T 4gcm_A 197 DFIWSHTLKSINEKDGKVGSVTLTSTKDG----SEETHEADGVFIYIGMKPLTAP--FKDLGITN-DVGYIVTKDDMTTS 269 (312)
T ss_dssp EEECSEEEEEEEEETTEEEEEEEEETTTC----CEEEEECSEEEECSCEEESCGG--GGGGTCBC-TTSCBCCCTTSBCS
T ss_pred ceeeecceeeeeccccccccceeeeecCC----ceeEEeeeeEEeecCCCcCchh--HHhcceec-CCCeEeeCCCCccC
Confidence 888888877776655432211 111122 2458999999999999999987 56777764 58999999999999
Q ss_pred CCCEEEecccCC-CCCcHHHHHHHHHHHHHHHhC
Q psy9583 705 IPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 705 ~~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~g 737 (866)
+|||||+|||++ .+++++.|+.||++||.||..
T Consensus 270 ~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~ 303 (312)
T 4gcm_A 270 VPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAE 303 (312)
T ss_dssp STTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999997 467999999999999999963
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=328.98 Aligned_cols=301 Identities=21% Similarity=0.295 Sum_probs=216.7
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|++.|||+||||||||++||.+|+++|++|+|||+. ..||.|.+ ||+|++.+... + .+++
T Consensus 1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~-------~~gg~~~~-G~~~~~~~i~~----------~--~g~~ 60 (314)
T 4a5l_A 1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGF-------MAGGVAAG-GQLTTTTIIEN----------F--PGFP 60 (314)
T ss_dssp -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS-------SGGGCCTT-CGGGGSSEECC----------S--TTCT
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-------CCCCcccC-CCcCChHHhhh----------c--cCCc
Confidence 666799999999999999999999999999999985 67888887 88886543211 0 0111
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..++..++..+ +...+++.++++.......... ....+.+.+.++.++.||+||||||+.|+.
T Consensus 61 ---~~i~~~~l~~~-----------~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~liiATG~~~~~ 123 (314)
T 4a5l_A 61 ---NGIDGNELMMN-----------MRTQSEKYGTTIITETIDHVDF---STQPFKLFTEEGKEVLTKSVIIATGATAKR 123 (314)
T ss_dssp ---TCEEHHHHHHH-----------HHHHHHHTTCEEECCCEEEEEC---SSSSEEEEETTCCEEEEEEEEECCCEEECC
T ss_pred ---ccCCHHHHHHH-----------HHHHHhhcCcEEEEeEEEEeec---CCCceEEEECCCeEEEEeEEEEcccccccc
Confidence 11233333322 3345667788887766555332 223344445667889999999999999987
Q ss_pred CCCCcCCC---ceEecchhhhcc--ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHH
Q psy9583 547 FPGVKFDE---NLILSNKGALEM--INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621 (866)
Q Consensus 547 ~p~~~~~~---~~~~t~~~~~~~--~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l 621 (866)
|+.++.+. ..+......... ...+++++|||||++|+|+|..|+++|.+|++++|.+..... ++ ...+.+
T Consensus 124 ~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~--~~---~~~~~~ 198 (314)
T 4a5l_A 124 MHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRAS--KT---MQERVL 198 (314)
T ss_dssp CCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSC--HH---HHHHHH
T ss_pred cCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeeeccccccccc--ch---hhhhhh
Confidence 66554221 222233222222 235799999999999999999999999999999998776542 22 234455
Q ss_pred HHcCCEEEeCceEEEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCC
Q psy9583 622 NKQGLNIILNTKIHDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDN 700 (866)
Q Consensus 622 ~~~GV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~ 700 (866)
...++..+....+.++...+... .+.+.... ..+...+++|.|++|+|++||++++. .++.++++|.| ||++
T Consensus 199 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~i~~d~vi~a~G~~pn~~~l~---~~~~~~~~G~i-v~~~ 271 (314)
T 4a5l_A 199 NHPKIEVIWNSELVELEGDGDLLNGAKIHNLV---SGEYKVVPVAGLFYAIGHSPNSKFLG---GQVKTADDGYI-LTEG 271 (314)
T ss_dssp TCTTEEEECSEEEEEEEESSSSEEEEEEEETT---TCCEEEEECSEEEECSCEEESCGGGT---TSSCBCTTSCB-CCBT
T ss_pred cccceeeEeeeeeEEEEeeeeccceeEEeecc---cccceeeccccceEecccccChhHhc---ccceEcCCeeE-eCCC
Confidence 66788899999998888765432 23333211 11245899999999999999999853 35777878855 9999
Q ss_pred CCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHh
Q psy9583 701 CETNIPNIYAIGDVVRGP-MLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 701 l~Ts~~~VyA~GD~a~~~-~~~~~A~~~g~~aa~~i~ 736 (866)
+|||+|||||+|||++.+ +++..|+.||+.||.++.
T Consensus 272 ~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 272 PKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCE 308 (314)
T ss_dssp TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHH
T ss_pred CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999876 589999999999999874
|
| >1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=302.75 Aligned_cols=181 Identities=9% Similarity=0.099 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeCCeeEEc
Q psy9583 179 RLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYH 258 (866)
Q Consensus 179 r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~~~~~~~ 258 (866)
||.--+.. ...++||+|++.++|+|+|+++|++. ++|+++|++||+++||++||+||++|++++++++
T Consensus 18 R~~~f~~f--~~~~~P~~t~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~ 85 (219)
T 1q23_A 18 RKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMKDGELVIW 85 (219)
T ss_dssp THHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEE
T ss_pred CHHHHHHh--cCCCCcEEEEEEEEEhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEe
Confidence 44444444 34578999999999999999998642 7999999999999999999999999999999999
Q ss_pred cceeEEEEE-ecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcC-CCCc-cccCCceEEEEcCCCcCccccccccCCC
Q psy9583 259 KYYDIGIAI-SSSRGLVVPILRNADTMSIADIEKKINEFINKAQDN-KLLP-EEMSGGTFTISNGGVFGSMLSTPIINPP 335 (866)
Q Consensus 259 ~~~~i~~av-~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~-~l~~-~~~~~gt~tisn~g~~g~~~~~~ii~~p 335 (866)
+++|||+|| ++++||++||++. ..+++.+|+++++++++++|+| +|.+ +|+ ||||||||+||+ .|+|++|+|
T Consensus 86 ~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~---~ft~i~~~~ 160 (219)
T 1q23_A 86 DSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWV---SFTSFDLNV 160 (219)
T ss_dssp SCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTC---CCSEEEEEE
T ss_pred cccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccc---cccccccCC
Confidence 999999999 9999999999996 5689999999999999999998 6975 889 999999999998 566777666
Q ss_pred c------eEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 336 Q------SAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 336 ~------~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
+ ++||++|++.++ ++ |++|++++++|||++||.++++|...
T Consensus 161 ~~~~~~~~pIi~~G~~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~ 207 (219)
T 1q23_A 161 ANMDNFFAPVFTMGKYYTQ----GD----KVLMPLAIQVHHAVCDGFHVGRMLNE 207 (219)
T ss_dssp SCCTTCCSCEEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred CCCccceeEEEecccEEEE----CC----cEEEEEEEEEEchhhChHHHHHHHHH
Confidence 5 599999999875 32 79999999999999999999988754
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=344.48 Aligned_cols=328 Identities=17% Similarity=0.226 Sum_probs=227.2
Q ss_pred cccccceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYG 464 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~g 464 (866)
|..++||+|||||+||++||..|++. |.+|+|||+++ .++ +..|.+++.++....... .......+
T Consensus 8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~------~~~----y~r~~lsk~l~~~~~~~~--~~~~~~~~ 75 (493)
T 1m6i_A 8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDP------ELP----YMRPPLSKELWFSDDPNV--TKTLRFKQ 75 (493)
T ss_dssp CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSS------SCC----BCSGGGGTGGGCC--CTH--HHHCEEEC
T ss_pred CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCC------CCC----CCCCCCCHHhhcCCccch--hhcccccc
Confidence 33468999999999999999999887 89999999973 222 112334554443221100 00000011
Q ss_pred ccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCC
Q psy9583 465 INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSK 543 (866)
Q Consensus 465 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~ 543 (866)
++.....+.+.....+. .. ..+ ..+.+.+++++.++.+. ++. ..+.+.+ .+|.++.||+||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~-----~~-~~l-~~~~~~gv~~~~g~~v~~id~---~~~~V~~--~~g~~i~yd~lviATGs~ 143 (493)
T 1m6i_A 76 WNGKERSIYFQPPSFYV-----SA-QDL-PHIENGGVAVLTGKKVVQLDV---RDNMVKL--NDGSQITYEKCLIATGGT 143 (493)
T ss_dssp TTSCEEESBSSCGGGSB-----CT-TTT-TTSTTCEEEEEETCCEEEEEG---GGTEEEE--TTSCEEEEEEEEECCCEE
T ss_pred cccccccccccchHhhc-----ch-hhh-hhhhcCCeEEEcCCEEEEEEC---CCCEEEE--CCCCEEECCEEEECCCCC
Confidence 11000000000000000 00 000 00235689999986555 544 3355554 567789999999999999
Q ss_pred CcCCCCCcCC------CceE-ecchhhhccc---cCCCeEEEECCcHHHHHHHHHHHh----cCCcEEEEecCCcCCC-c
Q psy9583 544 ARSFPGVKFD------ENLI-LSNKGALEMI---NVPKKLCIIGAGVIGLEIGSIWRR----LGSEVTILEMSSNFLN-T 608 (866)
Q Consensus 544 p~~~p~~~~~------~~~~-~t~~~~~~~~---~~~~~vvVIGgG~~glE~A~~l~~----~g~~Vtli~~~~~~l~-~ 608 (866)
|+.+|.++.. ..+. .+.+++..+. ..+++++|||||++|+|+|..|.+ .|.+|+++++.+.++. .
T Consensus 144 p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~ 223 (493)
T 1m6i_A 144 PRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI 223 (493)
T ss_dssp ECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT
T ss_pred CCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccccc
Confidence 9876543311 1111 2444444333 248999999999999999999987 5789999999887664 5
Q ss_pred ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCee
Q psy9583 609 VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688 (866)
Q Consensus 609 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~ 688 (866)
+++++.+.+.+.++++||++++++.|++++.+++.+.+.+. +|. ++++|.||+|+|++||+++ ++.+|++
T Consensus 224 l~~~~~~~~~~~l~~~GV~v~~~~~V~~i~~~~~~~~v~l~--dG~------~i~aD~Vv~a~G~~pn~~l--~~~~gl~ 293 (493)
T 1m6i_A 224 LPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLK--DGR------KVETDHIVAAVGLEPNVEL--AKTGGLE 293 (493)
T ss_dssp SCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEET--TSC------EEEESEEEECCCEEECCTT--HHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCeEEEEEC--CCC------EEECCEEEECCCCCccHHH--HHHcCCc
Confidence 78899999999999999999999999999876666655554 665 8999999999999999987 6788898
Q ss_pred ecC-CCcEEeCCCCCCCCCCEEEecccCCCC---------CcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEE
Q psy9583 689 VNE-NNFIIVNDNCETNIPNIYAIGDVVRGP---------MLAHKAEEEGIMVAEHISGQKHSINFNALPFVI 751 (866)
Q Consensus 689 ~~~-~G~i~Vd~~l~Ts~~~VyA~GD~a~~~---------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~ 751 (866)
+++ +|+|.||++||| .|+|||+|||+..+ ..+..|..||++||.||+|...+ |...|+++
T Consensus 294 ~~~~~ggi~Vd~~l~t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~~~--~~~~~~~~ 363 (493)
T 1m6i_A 294 IDSDFGGFRVNAELQA-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKP--YWHQSMFW 363 (493)
T ss_dssp BCTTTCSEECCTTCEE-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCCC--CCCCCEEE
T ss_pred cccCCCcEEECCCccc-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCCCC--cCCcCcee
Confidence 885 578999999998 69999999999632 25779999999999999997655 44556544
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=313.23 Aligned_cols=299 Identities=19% Similarity=0.228 Sum_probs=216.6
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|.+++||+|||||+||+++|..|++.|++|+|||+. .+||.|.+..++... . +++
T Consensus 5 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-------~~gg~~~~~~~~~~~----------------~--~~~ 59 (325)
T 2q7v_A 5 TAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-------MPGGQIAWSEEVENF----------------P--GFP 59 (325)
T ss_dssp CCEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------CTTGGGGGCSCBCCS----------------T--TCS
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-------CCCcccccccccccC----------------C--CCC
Confidence 334689999999999999999999999999999995 578888654432110 0 111
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..++...+.. .+...+++.+++++.+....++........+.+.+.++..+.||+||+|||+.|..
T Consensus 60 ---~~~~~~~~~~-----------~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~ 125 (325)
T 2q7v_A 60 ---EPIAGMELAQ-----------RMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK 125 (325)
T ss_dssp ---SCBCHHHHHH-----------HHHHHHHHTTCEEEECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred ---CCCCHHHHHH-----------HHHHHHHHcCCEEEeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 0112222222 23445677899998865554543100111134444456789999999999998876
Q ss_pred CCCCcCCC---ceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHH-
Q psy9583 547 FPGVKFDE---NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN- 622 (866)
Q Consensus 547 ~p~~~~~~---~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~- 622 (866)
++.++... ..++...........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ++. +.+.+.
T Consensus 126 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~--~~~----~~~~l~~ 199 (325)
T 2q7v_A 126 LGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA--NKV----AQARAFA 199 (325)
T ss_dssp CCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS--CHH----HHHHHHT
T ss_pred CCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc--chH----HHHHHHh
Confidence 64443221 23333333333334579999999999999999999999999999999887643 333 233444
Q ss_pred HcCCEEEeCceEEEEEEcCCeEEEEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC
Q psy9583 623 KQGLNIILNTKIHDIKINKENVLINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 623 ~~GV~i~~~~~v~~i~~~~~~~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l 701 (866)
+.||+++++++++++..++....+.+.. .+|+ ..++++|.|++|+|++|+.+++ +.. ++++++|+|.||+++
T Consensus 200 ~~gv~i~~~~~v~~i~~~~~v~~v~~~~~~~g~----~~~i~~D~vi~a~G~~p~~~~l--~~~-~~~~~~g~i~vd~~~ 272 (325)
T 2q7v_A 200 NPKMKFIWDTAVEEIQGADSVSGVKLRNLKTGE----VSELATDGVFIFIGHVPNTAFV--KDT-VSLRDDGYVDVRDEI 272 (325)
T ss_dssp CTTEEEECSEEEEEEEESSSEEEEEEEETTTCC----EEEEECSEEEECSCEEESCGGG--TTT-SCBCTTSCBCCBTTT
T ss_pred cCCceEecCCceEEEccCCcEEEEEEEECCCCc----EEEEEcCEEEEccCCCCChHHH--hhh-cccCCCccEecCCCC
Confidence 4699999999999998764333455543 2343 3478999999999999999874 555 778888999999999
Q ss_pred CCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q psy9583 702 ETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 702 ~Ts~~~VyA~GD~a~~-~~~~~~A~~~g~~aa~~i~g 737 (866)
+|++|+|||+|||++. +++++.|..||++||.||..
T Consensus 273 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 273 YTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTER 309 (325)
T ss_dssp BCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 68999999999999999975
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=310.16 Aligned_cols=293 Identities=17% Similarity=0.195 Sum_probs=217.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCC-eEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGF-KTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
|||+|||||+||+++|..|++.|+ +|+|||+. .+||.|.+..+.... . +++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-------~~gg~~~~~~~~~~~----------------~--~~~--- 53 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-------MPGGQITGSSEIENY----------------P--GVK--- 53 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-------STTCGGGGCSCBCCS----------------T--TCC---
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-------CCCcccccccccccC----------------C--CCc---
Confidence 799999999999999999999999 99999984 678888655432210 0 111
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
..++...+..+ +...+++.+++++......++. ..+.+.+...++..+.||+||+|||+.|..++.
T Consensus 54 ~~~~~~~~~~~-----------l~~~~~~~~v~~~~~~v~~i~~---~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~ 119 (311)
T 2q0l_A 54 EVVSGLDFMQP-----------WQEQCFRFGLKHEMTAVQRVSK---KDSHFVILAEDGKTFEAKSVIIATGGSPKRTGI 119 (311)
T ss_dssp SCBCHHHHHHH-----------HHHHHHTTSCEEECSCEEEEEE---ETTEEEEEETTSCEEEEEEEEECCCEEECCCCC
T ss_pred ccCCHHHHHHH-----------HHHHHHHcCCEEEEEEEEEEEE---cCCEEEEEEcCCCEEECCEEEECCCCCCCCCCC
Confidence 11222222222 3345667799988755444433 224455655566789999999999998876654
Q ss_pred CcCC---CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHH-HcC
Q psy9583 550 VKFD---ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN-KQG 625 (866)
Q Consensus 550 ~~~~---~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~-~~G 625 (866)
++.. +..+++..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+. .+++ +.+.+. +.|
T Consensus 120 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~----~~~~l~~~~g 193 (311)
T 2q0l_A 120 KGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR--CAPI----TLEHAKNNDK 193 (311)
T ss_dssp BTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC--SCHH----HHHHHHTCTT
T ss_pred CChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC--CCHH----HHHHHhhCCC
Confidence 4321 12344333333334457999999999999999999999999999999988764 3443 334454 479
Q ss_pred CEEEeCceEEEEEEcCCeE-EEEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCcccc----CeeecCCCcEEeCC
Q psy9583 626 LNIILNTKIHDIKINKENV-LINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI----GLKVNENNFIIVND 699 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~-~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~----gl~~~~~G~i~Vd~ 699 (866)
|++++++.++++..+++++ .+.+.. .+|. ..++++|.|++|+|++|+++++ +.. +++++++|+|.||+
T Consensus 194 v~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~----~~~i~~D~vi~a~G~~p~~~~l--~~~g~~~~l~~~~~g~i~vd~ 267 (311)
T 2q0l_A 194 IEFLTPYVVEEIKGDASGVSSLSIKNTATNE----KRELVVPGFFIFVGYDVNNAVL--KQEDNSMLCKCDEYGSIVVDF 267 (311)
T ss_dssp EEEETTEEEEEEEEETTEEEEEEEEETTTCC----EEEEECSEEEECSCEEECCGGG--BCTTSCBSSCBCTTSCBCCCT
T ss_pred eEEEeCCEEEEEECCCCcEeEEEEEecCCCc----eEEEecCEEEEEecCccChhhh--hcccccceeEeccCCCEEeCC
Confidence 9999999999998775543 455542 1343 3478999999999999999874 555 38888889999999
Q ss_pred CCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q psy9583 700 NCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~~-~~~~~~A~~~g~~aa~~i~g 737 (866)
++||++|+|||+|||++. +++++.|..||++||.||..
T Consensus 268 ~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 306 (311)
T 2q0l_A 268 SMKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVIS 306 (311)
T ss_dssp TCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999986 68999999999999999864
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-34 Score=309.66 Aligned_cols=295 Identities=21% Similarity=0.302 Sum_probs=217.3
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|..++||+|||||+||+++|..|++.|++|+|||+. .+||.|.+..++... . ++
T Consensus 13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-------~~gg~~~~~~~~~~~----------------~--~~- 66 (319)
T 3cty_A 13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-------VAGGLTAEAPLVENY----------------L--GF- 66 (319)
T ss_dssp -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------STTGGGGGCSCBCCB----------------T--TB-
T ss_pred ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-------CCCccccccchhhhc----------------C--CC-
Confidence 444699999999999999999999999999999984 578887654332110 0 00
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
...+...+.. .+...+++.+++++.+....++. ..+.+.+.+ ++..+.||+||+|||+.|..
T Consensus 67 ---~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~---~~~~~~v~~-~~~~~~~~~li~AtG~~~~~ 128 (319)
T 3cty_A 67 ---KSIVGSELAK-----------LFADHAANYAKIREGVEVRSIKK---TQGGFDIET-NDDTYHAKYVIITTGTTHKH 128 (319)
T ss_dssp ---SSBCHHHHHH-----------HHHHHHHTTSEEEETCCEEEEEE---ETTEEEEEE-SSSEEEEEEEEECCCEEECC
T ss_pred ---cccCHHHHHH-----------HHHHHHHHcCCEEEEeeEEEEEE---eCCEEEEEE-CCCEEEeCEEEECCCCCccc
Confidence 0111222211 23445667799988765544433 224455554 34679999999999998876
Q ss_pred CCCCcCCC---ceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH
Q psy9583 547 FPGVKFDE---NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK 623 (866)
Q Consensus 547 ~p~~~~~~---~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~ 623 (866)
++..+... ..+............+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ++ .+.+.+++
T Consensus 129 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~--~~----~l~~~l~~ 202 (319)
T 3cty_A 129 LGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC--EN----AYVQEIKK 202 (319)
T ss_dssp CCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS--CH----HHHHHHHH
T ss_pred CCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC--CH----HHHHHHhc
Confidence 65433221 22333322222334579999999999999999999999999999999887643 33 34556678
Q ss_pred cCCEEEeCceEEEEEEcCCe-EEEEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC
Q psy9583 624 QGLNIILNTKIHDIKINKEN-VLINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~~~-~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l 701 (866)
.||+++++++++++..+++. ..+.+.. .+|. ..++++|.|++|+|++|+.++ ++..|++++++|+|.||+++
T Consensus 203 ~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~~g~----~~~i~~D~vi~a~G~~p~~~~--l~~~gl~~~~~g~i~vd~~~ 276 (319)
T 3cty_A 203 RNIPYIMNAQVTEIVGDGKKVTGVKYKDRTTGE----EKLIETDGVFIYVGLIPQTSF--LKDSGVKLDERGYIVVDSRQ 276 (319)
T ss_dssp TTCCEECSEEEEEEEESSSSEEEEEEEETTTCC----EEEECCSEEEECCCEEECCGG--GTTSCCCBCTTSCBCCCTTC
T ss_pred CCcEEEcCCeEEEEecCCceEEEEEEEEcCCCc----eEEEecCEEEEeeCCccChHH--HhhccccccCCccEeCCCCC
Confidence 99999999999999887542 2355542 2343 347999999999999999988 46778999888999999999
Q ss_pred CCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q psy9583 702 ETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 702 ~Ts~~~VyA~GD~a~~-~~~~~~A~~~g~~aa~~i~g 737 (866)
+|++|+|||+|||++. +++++.|+.||++||.||..
T Consensus 277 ~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 313 (319)
T 3cty_A 277 RTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYS 313 (319)
T ss_dssp BCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 57999999999999999964
|
| >3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-35 Score=293.08 Aligned_cols=175 Identities=10% Similarity=0.112 Sum_probs=155.3
Q ss_pred cccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeCCeeEEccceeEEEEE-ec
Q psy9583 191 ANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAI-SS 269 (866)
Q Consensus 191 ~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~~~~~~~~~~~i~~av-~~ 269 (866)
.++||+|++.++|+|+|+++|++ .++|+++|++||+++||++||+||++|+++++++++++|||+|| ++
T Consensus 23 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t 92 (213)
T 3cla_A 23 RLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ 92 (213)
T ss_dssp TSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred CCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeC
Confidence 46899999999999999999853 28999999999999999999999999999999999999999999 99
Q ss_pred CCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcC-CCCc-cccCCceEEEEcCCCcCccccccccCCC---ceEEEEecc
Q psy9583 270 SRGLVVPILRNADTMSIADIEKKINEFINKAQDN-KLLP-EEMSGGTFTISNGGVFGSMLSTPIINPP---QSAILGVHA 344 (866)
Q Consensus 270 ~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~-~l~~-~~~~~gt~tisn~g~~g~~~~~~ii~~p---~~~il~vg~ 344 (866)
++||++||+++ +.+++.+|+++++++++++|+| +|.+ +|++||||||||+||++.+.++..++++ .++|+++|+
T Consensus 93 ~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~~~~PIi~~G~ 171 (213)
T 3cla_A 93 ETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTDYFAPIITMAK 171 (213)
T ss_dssp TTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTTCCSCEEEEEC
T ss_pred CCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCcccccEEEeeE
Confidence 99999999987 5689999999999999999996 9988 8899999999999998655443333333 258999999
Q ss_pred ceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 345 IKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 345 ~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
+.++ ++ +++|++++++|||++||.++++|...
T Consensus 172 ~~~~----~~----~~~m~lsls~DHRvvDG~~aa~Fl~~ 203 (213)
T 3cla_A 172 YQQE----GD----RLLLPLSVQVHHAVCDGFHVARFINR 203 (213)
T ss_dssp CEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred EEEE----CC----eEEEEEEEEEcccccChHHHHHHHHH
Confidence 9865 33 79999999999999999999988754
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=311.21 Aligned_cols=293 Identities=22% Similarity=0.272 Sum_probs=219.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
++||+|||||+||+++|..|++.|++|+|||+ . +||.|.+.+.... ++..
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~-------~-~gg~~~~~~~~~~---------------------~~~~- 64 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGE-------T-PGGQLTEAGIVDD---------------------YLGL- 64 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-------S-TTGGGGGCCEECC---------------------STTS-
T ss_pred ccCEEEECccHHHHHHHHHHHHCCCcEEEEec-------c-CCCeecccccccc---------------------cCCC-
Confidence 48999999999999999999999999999998 3 7887755322110 0000
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
.......+. ..+...+++.+++++......++. ..+.+.+.+.++..+.||+||+|||+.|..++.
T Consensus 65 ~~~~~~~~~-----------~~~~~~~~~~~v~~~~~~v~~i~~---~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i 130 (323)
T 3f8d_A 65 IEIQASDMI-----------KVFNKHIEKYEVPVLLDIVEKIEN---RGDEFVVKTKRKGEFKADSVILGIGVKRRKLGV 130 (323)
T ss_dssp TTEEHHHHH-----------HHHHHHHHTTTCCEEESCEEEEEE---C--CEEEEESSSCEEEEEEEEECCCCEECCCCC
T ss_pred CCCCHHHHH-----------HHHHHHHHHcCCEEEEEEEEEEEe---cCCEEEEEECCCCEEEcCEEEECcCCCCccCCC
Confidence 001112222 123455677899988855444443 334566666667789999999999999876644
Q ss_pred CcCCC---ceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 550 VKFDE---NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 550 ~~~~~---~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
.+... ..+............+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++ ++++ +.+.+++.||
T Consensus 131 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~---~~~~~~~~gv 205 (323)
T 3f8d_A 131 PGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA--QPIY---VETVKKKPNV 205 (323)
T ss_dssp TTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS--CHHH---HHHHHTCTTE
T ss_pred CchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc--CHHH---HHHHHhCCCc
Confidence 43322 33333333333334579999999999999999999999999999999998876 3322 2333344599
Q ss_pred EEEeCceEEEEEEcCCeEEEEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNI 705 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~ 705 (866)
++++++.++++..++....+.+.+ .+|+ ...+++|.|++|+|++|+.++ ++.++++++++|+|.||++++|++
T Consensus 206 ~~~~~~~v~~i~~~~~~~~v~~~~~~~g~----~~~~~~D~vv~a~G~~p~~~~--~~~~g~~~~~~g~i~vd~~~~t~~ 279 (323)
T 3f8d_A 206 EFVLNSVVKEIKGDKVVKQVVVENLKTGE----IKELNVNGVFIEIGFDPPTDF--AKSNGIETDTNGYIKVDEWMRTSV 279 (323)
T ss_dssp EEECSEEEEEEEESSSEEEEEEEETTTCC----EEEEECSEEEECCCEECCHHH--HHHTTCCBCTTSSBCCCTTCBCSS
T ss_pred EEEeCCEEEEEeccCceeEEEEEECCCCc----eEEEEcCEEEEEECCCCChhH--HhhcCeeecCCCcEecCCCceecC
Confidence 999999999999876555566653 2243 347999999999999999887 678899999999999999999999
Q ss_pred CCEEEecccCCC---CCcHHHHHHHHHHHHHHHhC
Q psy9583 706 PNIYAIGDVVRG---PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 706 ~~VyA~GD~a~~---~~~~~~A~~~g~~aa~~i~g 737 (866)
|||||+|||++. +++++.|+.||+.||.||+.
T Consensus 280 ~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 314 (323)
T 3f8d_A 280 PGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYR 314 (323)
T ss_dssp TTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEcceecCCCCcccceeehhhHHHHHHHHHHH
Confidence 999999999985 78999999999999999964
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=307.77 Aligned_cols=296 Identities=18% Similarity=0.194 Sum_probs=221.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEE-EeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTAC-IDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~l-iek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++||+|||||+||++||..|++.|++|+| ||+. .+||.|.+..+++... +.+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-------~~gG~~~~~~~~~~~~------------------~~~-- 56 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-------MPGGQITSSSEIENYP------------------GVA-- 56 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-------STTGGGGGCSCBCCST------------------TCC--
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-------CCCceeeeeceeccCC------------------CCC--
Confidence 58999999999999999999999999999 9984 6788876554332110 000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEE--EEcCCceEEEecEEEEecCCCCcC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQ--IINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~--v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.......+..+ +...+++.+++++.+....+ . +.....+. +.++ + .+.||+||+|||+.|..
T Consensus 57 -~~~~~~~~~~~-----------~~~~~~~~~v~~~~~~v~~i-~-~~~~~~~~v~~~~~-~-~~~~d~lvlAtG~~~~~ 120 (315)
T 3r9u_A 57 -QVMDGISFMAP-----------WSEQCMRFGLKHEMVGVEQI-L-KNSDGSFTIKLEGG-K-TELAKAVIVCTGSAPKK 120 (315)
T ss_dssp -SCBCHHHHHHH-----------HHHHHTTTCCEEECCCEEEE-E-ECTTSCEEEEETTS-C-EEEEEEEEECCCEEECC
T ss_pred -CCCCHHHHHHH-----------HHHHHHHcCcEEEEEEEEEE-e-cCCCCcEEEEEecC-C-EEEeCEEEEeeCCCCCC
Confidence 11222222222 34556778999988855555 2 11113455 5443 3 89999999999998876
Q ss_pred CCCCcCCC---ceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH
Q psy9583 547 FPGVKFDE---NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK 623 (866)
Q Consensus 547 ~p~~~~~~---~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~ 623 (866)
++.++... ..+++..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. +++ .+.+.+++
T Consensus 121 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~--~~~---~~~~~~~~ 195 (315)
T 3r9u_A 121 AGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA--APS---TVEKVKKN 195 (315)
T ss_dssp CCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS--CHH---HHHHHHHC
T ss_pred CCCCChhhcCCCeEEeeecccccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC--CHH---HHHHHHhc
Confidence 65444332 34555544444455689999999999999999999999999999999988732 333 33455578
Q ss_pred cCCEEEeCceEEEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCc-cccC-eeecCCCcEEeCCC
Q psy9583 624 QGLNIILNTKIHDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNI-DKIG-LKVNENNFIIVNDN 700 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l-~~~g-l~~~~~G~i~Vd~~ 700 (866)
.||++++++.+.++..+++.+ .+.+...+|+ ..++++|.|++|+|++|+..++.. +.+| ++++++|+|.||++
T Consensus 196 ~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~g~----~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~ 271 (315)
T 3r9u_A 196 EKIELITSASVDEVYGDKMGVAGVKVKLKDGS----IRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLK 271 (315)
T ss_dssp TTEEEECSCEEEEEEEETTEEEEEEEECTTSC----EEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTT
T ss_pred CCeEEEeCcEEEEEEcCCCcEEEEEEEcCCCC----eEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCC
Confidence 899999999999998876543 2555433453 357999999999999999988543 3465 99998899999999
Q ss_pred CCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHhC
Q psy9583 701 CETNIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 701 l~Ts~~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~g 737 (866)
+||++|+|||+|||++ .++.+..|+.||+.||.+|..
T Consensus 272 ~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 309 (315)
T 3r9u_A 272 MQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMA 309 (315)
T ss_dssp CBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHH
Confidence 9999999999999986 578999999999999999863
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=313.27 Aligned_cols=301 Identities=19% Similarity=0.256 Sum_probs=220.8
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
++++||+|||||+||+++|..|++.|++|+|||+. +.+||.|.+. .|++.+.. ..+++
T Consensus 3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~------~~~gg~~~~~--~~~~~~~~-------------~~~~~- 60 (335)
T 2zbw_A 3 ADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPL------PEPGGQLTAL--YPEKYIYD-------------VAGFP- 60 (335)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS------SSSCHHHHHT--CTTSEECC-------------STTCS-
T ss_pred CCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC------CCCCCeeecc--CCCceeec-------------cCCCC-
Confidence 34689999999999999999999999999999997 6788877432 23221100 00000
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCC---
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSK--- 543 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~--- 543 (866)
......+.. .+...+++.+++++.+..+. ++. ....+.+.+.++..+.||+||+|||+.
T Consensus 61 ---~~~~~~~~~-----------~l~~~~~~~~~~~~~~~~v~~i~~---~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~ 123 (335)
T 2zbw_A 61 ---KVYAKDLVK-----------GLVEQVAPFNPVYSLGERAETLER---EGDLFKVTTSQGNAYTAKAVIIAAGVGAFE 123 (335)
T ss_dssp ---SEEHHHHHH-----------HHHHHHGGGCCEEEESCCEEEEEE---ETTEEEEEETTSCEEEEEEEEECCTTSEEE
T ss_pred ---CCCHHHHHH-----------HHHHHHHHcCCEEEeCCEEEEEEE---CCCEEEEEECCCCEEEeCEEEECCCCCCCC
Confidence 112222221 23344566788887765544 332 223566766667789999999999994
Q ss_pred CcCCCCCcCC---CceEec-chhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHH
Q psy9583 544 ARSFPGVKFD---ENLILS-NKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFH 619 (866)
Q Consensus 544 p~~~p~~~~~---~~~~~t-~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~ 619 (866)
|..++..+.. ...++. ..+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++ .++..+.+.+
T Consensus 124 p~~~~i~g~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~--~~~~~~~l~~ 199 (335)
T 2zbw_A 124 PRRIGAPGEREFEGRGVYYAVKSKA--EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA--HEASVKELMK 199 (335)
T ss_dssp ECCCCCTTTTTTBTTTEESSCSCGG--GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS--CHHHHHHHHH
T ss_pred CCCCCCCChhhccCcEEEEecCchh--hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc--cHHHHHHHHh
Confidence 5544333221 111221 11111 12479999999999999999999999999999999988765 3567788889
Q ss_pred HHHHcCCEEEeCceEEEEEEcCCeEEEEEeeC-CCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeC
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVN 698 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd 698 (866)
.+++.||++++++.+.++..++....+.+... +|. ..++++|.|++|+|++|+.++ ++.++++++ +|+|.||
T Consensus 200 ~l~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~~~g~----~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~vd 272 (335)
T 2zbw_A 200 AHEEGRLEVLTPYELRRVEGDERVRWAVVFHNQTQE----ELALEVDAVLILAGYITKLGP--LANWGLALE-KNKIKVD 272 (335)
T ss_dssp HHHTTSSEEETTEEEEEEEESSSEEEEEEEETTTCC----EEEEECSEEEECCCEEEECGG--GGGSCCCEE-TTEEECC
T ss_pred ccccCCeEEecCCcceeEccCCCeeEEEEEECCCCc----eEEEecCEEEEeecCCCCchH--hhhcceecc-CCeeeeC
Confidence 99999999999999999998544334555432 342 347999999999999999887 577888887 7889999
Q ss_pred CCCCCCCCCEEEecccCC---CCCcHHHHHHHHHHHHHHHhCC
Q psy9583 699 DNCETNIPNIYAIGDVVR---GPMLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 699 ~~l~Ts~~~VyA~GD~a~---~~~~~~~A~~~g~~aa~~i~g~ 738 (866)
+++||++|+|||+|||+. .+++++.|+.||++||+||++.
T Consensus 273 ~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 315 (335)
T 2zbw_A 273 TTMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAANHAAAY 315 (335)
T ss_dssp TTCBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999995 4579999999999999999753
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=306.00 Aligned_cols=294 Identities=24% Similarity=0.319 Sum_probs=216.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+|||||+||+++|..|++.|++|+|||+ .+||.|....+++.. . +.
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--------~~gG~~~~~~~~~~~----------------~--~~---- 50 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--------RFGGQILDTVDIENY----------------I--SV---- 50 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--------STTGGGGGCCEECCB----------------T--TB----
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--------CCCceeccccccccc----------------c--Cc----
Confidence 38999999999999999999999999999975 468887543322210 0 00
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEe-EEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHG-HAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g-~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p 548 (866)
...+...+ ...+...+++.+++++.+ ....++........+.+..+++..+.||+||+|||+.|..|+
T Consensus 51 ~~~~~~~~-----------~~~~~~~~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~ 119 (310)
T 1fl2_A 51 PKTEGQKL-----------AGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMN 119 (310)
T ss_dssp SSEEHHHH-----------HHHHHHHHHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCC
T ss_pred CCCCHHHH-----------HHHHHHHHHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCC
Confidence 00111121 122445567789999998 444454311112245665566778999999999999887654
Q ss_pred CCcCC---CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH-c
Q psy9583 549 GVKFD---ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK-Q 624 (866)
Q Consensus 549 ~~~~~---~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~-~ 624 (866)
.++.. ...++...........+++++|||+|++|+|+|..|++.|.+|+++++.+.+. +++ .+.+.|++ .
T Consensus 120 ~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~----~~~~~l~~~~ 193 (310)
T 1fl2_A 120 VPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK--ADQ----VLQDKLRSLK 193 (310)
T ss_dssp CTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC--SCH----HHHHHHHTCT
T ss_pred CCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC--ccH----HHHHHHhhCC
Confidence 43322 22344443333333457999999999999999999999999999999998773 343 34556676 6
Q ss_pred CCEEEeCceEEEEEEcCCeE-EEEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCC
Q psy9583 625 GLNIILNTKIHDIKINKENV-LINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE 702 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~~-~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~ 702 (866)
||++++++.++++..+++.+ .+.+.+ .+|+ ..++++|.|++|+|++||++++ ++. ++++++|+|.||+++|
T Consensus 194 gv~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~----~~~i~~D~vi~a~G~~p~~~~l--~~~-l~~~~~g~i~vd~~~~ 266 (310)
T 1fl2_A 194 NVDIILNAQTTEVKGDGSKVVGLEYRDRVSGD----IHNIELAGIFVQIGLLPNTNWL--EGA-VERNRMGEIIIDAKCE 266 (310)
T ss_dssp TEEEESSEEEEEEEESSSSEEEEEEEETTTCC----EEEEECSEEEECSCEEESCGGG--TTT-SCBCTTSCBCCCTTCB
T ss_pred CeEEecCCceEEEEcCCCcEEEEEEEECCCCc----EEEEEcCEEEEeeCCccCchHH--hcc-ccccCCCcEEcCCCCc
Confidence 99999999999998765544 455553 2232 3578999999999999999874 443 7788889999999999
Q ss_pred CCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHhC
Q psy9583 703 TNIPNIYAIGDVVRGP-MLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 703 Ts~~~VyA~GD~a~~~-~~~~~A~~~g~~aa~~i~g 737 (866)
|++|+|||+|||++.+ +.+..|+.||+.||.+|..
T Consensus 267 t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 302 (310)
T 1fl2_A 267 TNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFD 302 (310)
T ss_dssp CSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHH
Confidence 9999999999999865 6899999999999999964
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=307.80 Aligned_cols=295 Identities=21% Similarity=0.290 Sum_probs=220.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
++||+|||||+||+++|..|++.|++|+|||+. .+||.|.+...... +. +++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-------~~gg~~~~~~~~~~----------------~~--~~~--- 56 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-------EKGGQLTTTTEVEN----------------WP--GDP--- 56 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-------STTGGGGGCSBCCC----------------ST--TCC---
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-------CCCceEecchhhhh----------------CC--CCC---
Confidence 589999999999999999999999999999973 67887644321110 00 010
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
..+....+.. .+...+++.+++++.++...++. ..+.+.+ ..++..+.||+||+|||+.|..++.
T Consensus 57 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~i~~---~~~~~~v-~~~~~~~~~~~lv~AtG~~~~~~~~ 121 (320)
T 1trb_A 57 NDLTGPLLME-----------RMHEHATKFETEIIFDHINKVDL---QNRPFRL-NGDNGEYTCDALIIATGASARYLGL 121 (320)
T ss_dssp SSCBHHHHHH-----------HHHHHHHHTTCEEECCCEEEEEC---SSSSEEE-EESSCEEEEEEEEECCCEEECCCCC
T ss_pred CCCCHHHHHH-----------HHHHHHHHCCCEEEEeeeeEEEe---cCCEEEE-EeCCCEEEcCEEEECCCCCcCCCCC
Confidence 0112222222 23345667899999887555543 2344554 3356789999999999998876554
Q ss_pred CcCC---CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 550 VKFD---ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 550 ~~~~---~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
++.. ...+.+..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+. .++.+.+.+.+.+++.||
T Consensus 122 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~--~~~~~~~~l~~~l~~~gv 199 (320)
T 1trb_A 122 PSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNI 199 (320)
T ss_dssp HHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSE
T ss_pred CChHHhCCceeEecccCCccccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCccc--cCHHHHHHHHHhcccCCe
Confidence 3311 22333333333333568999999999999999999999999999999988764 367788888899999999
Q ss_pred EEEeCceEEEEEEcCCeE-EEEEeeC-C-CCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC--
Q psy9583 627 NIILNTKIHDIKINKENV-LINYSNK-S-TNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC-- 701 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~-~v~~~~~-~-g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l-- 701 (866)
++++++.++++..+++.+ .+.+.+. + |. ..++++|.|++|+|++|+.+++ + .+++++ +|+|.||+++
T Consensus 200 ~i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~----~~~i~~D~vv~a~G~~p~~~~~--~-~~l~~~-~G~i~vd~~~~~ 271 (320)
T 1trb_A 200 ILHTNRTLEEVTGDQMGVTGVRLRDTQNSDN----IESLDVAGLFVAIGHSPNTAIF--E-GQLELE-NGYIKVQSGIHG 271 (320)
T ss_dssp EEECSCEEEEEEECSSSEEEEEEECCTTCCC----CEEEECSEEEECSCEEESCGGG--T-TTSCEE-TTEECCCCSSSS
T ss_pred EEEcCceeEEEEcCCCceEEEEEEeccCCCc----eEEEEcCEEEEEeCCCCChHHh--c-cccccc-CceEEECCCccc
Confidence 999999999998876443 3555531 1 32 3479999999999999999874 3 467888 8999999997
Q ss_pred ---CCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q psy9583 702 ---ETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 702 ---~Ts~~~VyA~GD~a~~-~~~~~~A~~~g~~aa~~i~g 737 (866)
+|++|+|||+|||++. +..+..|..+|+.||.+|..
T Consensus 272 ~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 311 (320)
T 1trb_A 272 NATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAER 311 (320)
T ss_dssp CTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHH
Confidence 8999999999999986 47899999999999999963
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-34 Score=309.92 Aligned_cols=287 Identities=18% Similarity=0.205 Sum_probs=204.6
Q ss_pred hcccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc-eeccccchhHHHhhHHHHHHhhhhhhcC
Q psy9583 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT-NVGCIPSKALLQTSHSFENVKNSFFEYG 464 (866)
Q Consensus 386 ~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~-~~g~~P~~~~~~~~~~~~~~~~~~~~~g 464 (866)
.|+ +|||+||||||||++||.+|++.|++|+|||++ .+||.+. +..+++..
T Consensus 3 ~M~-~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-------~~gg~~~~~~~~~~~~-------------------- 54 (304)
T 4fk1_A 3 AMK-YIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-------TNRNRVTQNSHGFITR-------------------- 54 (304)
T ss_dssp ----CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-------CCGGGGSSCBCCSTTC--------------------
T ss_pred CCC-CcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-------CCCCeeeeecCCccCC--------------------
Confidence 355 699999999999999999999999999999985 4555432 11111100
Q ss_pred ccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 465 INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 465 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
.......+.... .....+..++.++.+........ ....+++.+.++.++.||+||||||++|
T Consensus 55 -----~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~g~~~~a~~liiATGs~p 117 (304)
T 4fk1_A 55 -----DGIKPEEFKEIG----------LNEVMKYPSVHYYEKTVVMITKQ--STGLFEIVTKDHTKYLAERVLLATGMQE 117 (304)
T ss_dssp -----TTBCHHHHHHHH----------HHHHTTSTTEEEEECCEEEEEEC--TTSCEEEEETTCCEEEEEEEEECCCCEE
T ss_pred -----CCCCHHHHHHHH----------HHHHHhcCCEEEEeeEEEEeeec--CCCcEEEEECCCCEEEeCEEEEccCCcc
Confidence 011222222211 11122233566666666554322 2244566667788999999999999999
Q ss_pred cCCCCCcCC---CceEecchhhhccccCCCeEEEECCcH-HHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHH
Q psy9583 545 RSFPGVKFD---ENLILSNKGALEMINVPKKLCIIGAGV-IGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHL 620 (866)
Q Consensus 545 ~~~p~~~~~---~~~~~t~~~~~~~~~~~~~vvVIGgG~-~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~ 620 (866)
+.|+.++.. +..+++..........+++++|||||. .++|+|..+.+.+.+|+++.+.+.+. +.+.+.
T Consensus 118 ~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~--------~~~~~~ 189 (304)
T 4fk1_A 118 EFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELS--------QTIMDE 189 (304)
T ss_dssp ECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC--------HHHHHH
T ss_pred ccccccCccccccceeeeccccchhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccch--------hhhhhh
Confidence 877655422 334555555544455577888888775 57899999999999999998876543 345677
Q ss_pred HHHcCCEEEeCceEEEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC
Q psy9583 621 LNKQGLNIILNTKIHDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND 699 (866)
Q Consensus 621 l~~~GV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~ 699 (866)
|+++|+.++.+. ++.+..+++.+ .+.+ .+|. ++++|.++++.|.+|+..+ ++++|++++++|+|.||+
T Consensus 190 l~~~g~~~~~~~-v~~~~~~~~~~~~v~~--~~g~------~i~~~~~vi~~g~~~~~~~--~~~~g~~~~~~G~I~vd~ 258 (304)
T 4fk1_A 190 LSNKNIPVITES-IRTLQGEGGYLKKVEF--HSGL------RIERAGGFIVPTFFRPNQF--IEQLGCELQSNGTFVIDD 258 (304)
T ss_dssp HHTTTCCEECSC-EEEEESGGGCCCEEEE--TTSC------EECCCEEEECCEEECSSCH--HHHTTCCCCTTSSSCSST
T ss_pred hhccceeEeeee-EEEeecCCCeeeeeec--cccc------eeeecceeeeeccccCChh--hhhcCeEECCCCCEEECc
Confidence 889999998764 77777655443 2444 3665 8889988888888877776 688899999999999999
Q ss_pred CCCCCCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHh
Q psy9583 700 NCETNIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 700 ~l~Ts~~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~ 736 (866)
+||||+|||||+|||++ .+.++..|+.||+.||.+|.
T Consensus 259 ~~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 259 FGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAIN 296 (304)
T ss_dssp TCBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHH
Confidence 99999999999999996 45678999999999998874
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=303.06 Aligned_cols=280 Identities=17% Similarity=0.165 Sum_probs=208.5
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
+||+|||||+||+++|..|++.|++|+|||+. ...++.... ..+++. ..
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~------~~~~~~~~~------------------------~~~~~~-~~ 51 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAG------ERRNRFASH------------------------SHGFLG-QD 51 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECC------CCGGGGCSC------------------------CCSSTT-CT
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCC------Ccccccchh------------------------hcCCcC-CC
Confidence 89999999999999999999999999999986 211111000 000000 01
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
..+...+..+ +...+++. +++++.++...++. ....+.+...++.++.||+||+|||+.|+.++.
T Consensus 52 ~~~~~~~~~~-----------~~~~~~~~~~v~~~~~~v~~i~~---~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~ 117 (297)
T 3fbs_A 52 GKAPGEIIAE-----------ARRQIERYPTIHWVEGRVTDAKG---SFGEFIVEIDGGRRETAGRLILAMGVTDELPEI 117 (297)
T ss_dssp TCCHHHHHHH-----------HHHHHTTCTTEEEEESCEEEEEE---ETTEEEEEETTSCEEEEEEEEECCCCEEECCCC
T ss_pred CCCHHHHHHH-----------HHHHHHhcCCeEEEEeEEEEEEE---cCCeEEEEECCCCEEEcCEEEECCCCCCCCCCC
Confidence 1222222222 23345555 78888776655544 224566766777889999999999999876544
Q ss_pred CcCC---CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 550 VKFD---ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 550 ~~~~---~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
++.. ...+++..........+++++|||+|.+|+|+|..|.+.| +|+++.+.+. .+ ...+.+.|++.||
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~---~~----~~~~~~~l~~~gv 189 (297)
T 3fbs_A 118 AGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV---EP----DADQHALLAARGV 189 (297)
T ss_dssp BTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC---CC----CHHHHHHHHHTTC
T ss_pred CCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC---CC----CHHHHHHHHHCCc
Confidence 4322 2344444433333445899999999999999999999999 9999998876 22 2446778889999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeec--CCC-cEEeCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN--ENN-FIIVNDNCET 703 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~--~~G-~i~Vd~~l~T 703 (866)
+++. +.++++..++ .+.+. +|. ++++|.|++|+|++|+.++ ++.++++++ ++| +|.||++++|
T Consensus 190 ~i~~-~~v~~i~~~~---~v~~~--~g~------~~~~D~vi~a~G~~p~~~~--~~~~g~~~~~~~~G~~i~vd~~~~t 255 (297)
T 3fbs_A 190 RVET-TRIREIAGHA---DVVLA--DGR------SIALAGLFTQPKLRITVDW--IEKLGCAVEEGPMGSTIVTDPMKQT 255 (297)
T ss_dssp EEEC-SCEEEEETTE---EEEET--TSC------EEEESEEEECCEEECCCSC--HHHHTCCEEEETTEEEECCCTTCBC
T ss_pred EEEc-ceeeeeecCC---eEEeC--CCC------EEEEEEEEEccCcccCchh--HHhcCCccccCCCCceEEeCCCCcc
Confidence 9995 8999987543 44443 665 8999999999999999987 677888877 357 8999999999
Q ss_pred CCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 704 NIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 704 s~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
++|+|||+|||++.+++++.|+.||+.||.+|..
T Consensus 256 ~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~~ 289 (297)
T 3fbs_A 256 TARGIFACGDVARPAGSVALAVGDGAMAGAAAHR 289 (297)
T ss_dssp SSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeecCCchHHHHHHHHhHHHHHHHHHH
Confidence 9999999999998899999999999999999863
|
| >2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=284.36 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=156.1
Q ss_pred cccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEe-CCeeEEccceeEEEEE-e
Q psy9583 191 ANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVD-GNNIIYHKYYDIGIAI-S 268 (866)
Q Consensus 191 ~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~-~~~~~~~~~~~i~~av-~ 268 (866)
.++||++++.++|+|+|+++|++. ++|+++|++||+++||++||+||++|+ ++++++++++|||+|| +
T Consensus 25 ~~~P~~~~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~ 94 (217)
T 2i9d_A 25 FQNPQLSITSEVECGGARQRAKAA----------GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI 94 (217)
T ss_dssp CSBCEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred CCCceEEEEEEEEhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence 578999999999999999998642 799999999999999999999999999 8999999999999999 9
Q ss_pred cCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhc-CCCCcc------ccCCceEEEEcCCCcCccccccccCCC---ceE
Q psy9583 269 SSRGLVVPILRNADTMSIADIEKKINEFINKAQD-NKLLPE------EMSGGTFTISNGGVFGSMLSTPIINPP---QSA 338 (866)
Q Consensus 269 ~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~-~~l~~~------~~~~gt~tisn~g~~g~~~~~~ii~~p---~~~ 338 (866)
+++||++||+.. ..+++.+|+++++++++++|+ |+|.|+ |++||||||||+||++.+.++..++++ ..+
T Consensus 95 t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~~~g~~~~~P 173 (217)
T 2i9d_A 95 KENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYP 173 (217)
T ss_dssp STTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCBCSTTCCSSC
T ss_pred cCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCCCCCccceEE
Confidence 999999999974 568999999999999999999 599995 999999999999998665554444434 258
Q ss_pred EEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 339 ILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 339 il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
|+++|++.++ ++ |++|++++++|||++||.++++|...
T Consensus 174 Ii~~Gk~~~~----~~----r~~m~lsls~DHRvvDG~~aa~Fl~~ 211 (217)
T 2i9d_A 174 LLNAGKAIIR----EG----RLVMPIAMTIHHGFIDGHHLSLFYKK 211 (217)
T ss_dssp EEEECCCEEE----TT----EEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred EEecceEEEE----CC----cEEEEEEEEecchhhChHHHHHHHHH
Confidence 9999999865 32 79999999999999999999988764
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=309.08 Aligned_cols=303 Identities=17% Similarity=0.258 Sum_probs=219.6
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|+.++||+|||||+||+++|..|++.|++|+|||+. +.+||.|.+. .|.+.+. ...+++
T Consensus 11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~------~~~gg~~~~~--~~~~~~~-------------~~~~~~ 69 (360)
T 3ab1_A 11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESM------PQLGGQLAAL--YPEKHIY-------------DVAGFP 69 (360)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCHHHHHT--CTTSEEC-------------CSTTCS
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecC------CCCCCccccc--CCCcccc-------------cCCCCC
Confidence 334699999999999999999999999999999997 6788877432 2221110 000110
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCC--
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSK-- 543 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-- 543 (866)
.++...+. ..+...+++.+++++.+..+. ++.. ....+.+.+.++..+.||+||+|||+.
T Consensus 70 ----~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~v~~~~g~~~~~~~li~AtG~~~~ 132 (360)
T 3ab1_A 70 ----EVPAIDLV-----------ESLWAQAERYNPDVVLNETVTKYTKL--DDGTFETRTNTGNVYRSRAVLIAAGLGAF 132 (360)
T ss_dssp ----SEEHHHHH-----------HHHHHHHHTTCCEEECSCCEEEEEEC--TTSCEEEEETTSCEEEEEEEEECCTTCSC
T ss_pred ----CCCHHHHH-----------HHHHHHHHHhCCEEEcCCEEEEEEEC--CCceEEEEECCCcEEEeeEEEEccCCCcC
Confidence 11222222 123445667789888765544 3321 112566666667789999999999994
Q ss_pred -CcCCCCCc-C---CCceEec-chhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHH
Q psy9583 544 -ARSFPGVK-F---DENLILS-NKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKA 617 (866)
Q Consensus 544 -p~~~p~~~-~---~~~~~~t-~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l 617 (866)
|..++..+ . .+..++. ..+... ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.+. ++..+.+
T Consensus 133 ~~~~~~i~g~~~~~~~~~v~~~~~~~~~--~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~--~~~~~~l 208 (360)
T 3ab1_A 133 EPRKLPQLGNIDHLTGSSVYYAVKSVED--FKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH--GKTAHEV 208 (360)
T ss_dssp CBCCCGGGCCCTTTBTTTEESSCSCGGG--GTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC--SHHHHSS
T ss_pred CCCCCCCCCchhhCcCceEEEecCCHHH--cCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC--HHHHHHH
Confidence 44333222 1 1112222 111111 24789999999999999999999999999999999887653 3566778
Q ss_pred HHHHHHcCCEEEeCceEEEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEE
Q psy9583 618 FHLLNKQGLNIILNTKIHDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFII 696 (866)
Q Consensus 618 ~~~l~~~GV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 696 (866)
.+.+++.||++++++.++++..+++.+ .+.+...+|. ...+++|.|++|+|++|+.++ ++..+++++ +|+|.
T Consensus 209 ~~~~~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~g~----~~~i~~D~vi~a~G~~p~~~~--l~~~~~~~~-~g~i~ 281 (360)
T 3ab1_A 209 ERARANGTIDVYLETEVASIEESNGVLTRVHLRSSDGS----KWTVEADRLLILIGFKSNLGP--LARWDLELY-ENALV 281 (360)
T ss_dssp HHHHHHTSEEEESSEEEEEEEEETTEEEEEEEEETTCC----EEEEECSEEEECCCBCCSCGG--GGGSSCCEE-TTEEE
T ss_pred HHHhhcCceEEEcCcCHHHhccCCCceEEEEEEecCCC----eEEEeCCEEEECCCCCCCHHH--HHhhccccc-cCeee
Confidence 888899999999999999998876543 3444433442 347999999999999999987 577888887 78999
Q ss_pred eCCCCCCCCCCEEEecccCC---CCCcHHHHHHHHHHHHHHHhCC
Q psy9583 697 VNDNCETNIPNIYAIGDVVR---GPMLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 697 Vd~~l~Ts~~~VyA~GD~a~---~~~~~~~A~~~g~~aa~~i~g~ 738 (866)
||+++||++|+|||+|||+. .+++++.|..||++||+||++.
T Consensus 282 vd~~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~ 326 (360)
T 3ab1_A 282 VDSHMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMAVRHSLSY 326 (360)
T ss_dssp CCTTSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCcCCCCCEEEecCccCCCCccceeehhHHHHHHHHHHHHhh
Confidence 99999999999999999995 4679999999999999999753
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=302.91 Aligned_cols=299 Identities=21% Similarity=0.219 Sum_probs=220.6
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
.++||+|||||+||+++|..|++.|++|+|||+.+ .....+||.|.+....... .+++.
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~--~~~~~~gg~~~~~~~~~~~------------------~~~~~- 79 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMM--ANGIAAGGQLTTTTEIENF------------------PGFPD- 79 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS--BTTBCTTCGGGGSSEECCS------------------TTCTT-
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC--CCCCCcCcccccchhhccc------------------CCCcc-
Confidence 35899999999999999999999999999999952 2235788877543211100 01100
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEc---CCceEEEecEEEEecCCCCc
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIIN---KTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~---~~g~~i~~d~lViATGs~p~ 545 (866)
......+. ..+...+++.+++++.++...++. ..+.+.+.. .++..+.||+||+|||+.|.
T Consensus 80 --~~~~~~~~-----------~~~~~~~~~~gv~i~~~~v~~i~~---~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~ 143 (338)
T 3itj_A 80 --GLTGSELM-----------DRMREQSTKFGTEIITETVSKVDL---SSKPFKLWTEFNEDAEPVTTDAIILATGASAK 143 (338)
T ss_dssp --CEEHHHHH-----------HHHHHHHHHTTCEEECSCEEEEEC---SSSSEEEEETTCSSSCCEEEEEEEECCCEEEC
T ss_pred --cCCHHHHH-----------HHHHHHHHHcCCEEEEeEEEEEEE---cCCEEEEEEEecCCCcEEEeCEEEECcCCCcC
Confidence 01111221 224456777899999988444543 335566654 35578999999999999887
Q ss_pred CCCCCcCC---CceEecchhhhcc--ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHH
Q psy9583 546 SFPGVKFD---ENLILSNKGALEM--INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHL 620 (866)
Q Consensus 546 ~~p~~~~~---~~~~~t~~~~~~~--~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~ 620 (866)
.++.++.. ...+.+....... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.++. ...+.+.
T Consensus 144 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~------~~~~~~~ 217 (338)
T 3itj_A 144 RMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA------STIMQKR 217 (338)
T ss_dssp CCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS------CHHHHHH
T ss_pred CCCCCCchhccCccEEEchhcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC------CHHHHHH
Confidence 66544321 2233333333322 34579999999999999999999999999999999988765 3445566
Q ss_pred HHHc-CCEEEeCceEEEEEEcCCeEE-EEEeeC-CCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEe
Q psy9583 621 LNKQ-GLNIILNTKIHDIKINKENVL-INYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIV 697 (866)
Q Consensus 621 l~~~-GV~i~~~~~v~~i~~~~~~~~-v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~V 697 (866)
+.+. ||++++++.+++++.+++.+. +.+.+. +|. ..++++|.||+|+|++|+..++ +. +++++++|+|.|
T Consensus 218 l~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~----~~~i~~D~vi~a~G~~p~~~~~--~~-~l~~~~~G~i~v 290 (338)
T 3itj_A 218 AEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKKNE----ETDLPVSGLFYAIGHTPATKIV--AG-QVDTDEAGYIKT 290 (338)
T ss_dssp HHHCTTEEEECSEEEEEEEESSSSEEEEEEEETTTTE----EEEEECSEEEECSCEEECCGGG--BT-TBCBCTTSCBCC
T ss_pred HHhcCCeEEeecceeEEEEcccCcEEEEEEEECCCCc----eEEEEeCEEEEEeCCCCChhHh--hC-ceEecCCCcEEE
Confidence 6555 999999999999998776443 666531 221 3579999999999999999874 44 899998999985
Q ss_pred -CCCCCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q psy9583 698 -NDNCETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 698 -d~~l~Ts~~~VyA~GD~a~~-~~~~~~A~~~g~~aa~~i~g 737 (866)
|++++|++|+|||+|||++. ++.+..|+.||+.||.+|..
T Consensus 291 ~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 332 (338)
T 3itj_A 291 VPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEK 332 (338)
T ss_dssp CTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHH
Confidence 88999999999999999974 68899999999999999864
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=302.11 Aligned_cols=294 Identities=17% Similarity=0.240 Sum_probs=216.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
++||+|||||+||++||..|++.|++|+|||+. +.+||.|.+ +.|...+. .++..
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~------~~~gG~~~~--~~~~~~~~----------------~~~~~- 61 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESL------PQLGGQLSA--LYPEKYIY----------------DVAGF- 61 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCHHHHH--HCTTSEEC----------------CSTTC-
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcC------CCCCceehh--cCCCceEe----------------ccCCC-
Confidence 489999999999999999999999999999998 678887732 22221110 01000
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCC---CCc
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGS---KAR 545 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs---~p~ 545 (866)
.......+. ..+...+++.+++++.+..+. ++.. ....+.+.+.+++ +.||+||+|||+ .|.
T Consensus 62 ~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~ 127 (332)
T 3lzw_A 62 PKIRAQELI-----------NNLKEQMAKFDQTICLEQAVESVEKQ--ADGVFKLVTNEET-HYSKTVIITAGNGAFKPR 127 (332)
T ss_dssp SSEEHHHHH-----------HHHHHHHTTSCCEEECSCCEEEEEEC--TTSCEEEEESSEE-EEEEEEEECCTTSCCEEC
T ss_pred CCCCHHHHH-----------HHHHHHHHHhCCcEEccCEEEEEEEC--CCCcEEEEECCCE-EEeCEEEECCCCCcCCCC
Confidence 011122222 224455667799998766555 4331 1124566666665 999999999999 676
Q ss_pred CCCCCcCCC---ceEecchhhhcccc-CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHH
Q psy9583 546 SFPGVKFDE---NLILSNKGALEMIN-VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621 (866)
Q Consensus 546 ~~p~~~~~~---~~~~t~~~~~~~~~-~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l 621 (866)
.++.++... ..++. ...+... .+++++|||+|.+|+|+|..|.+.+.+|+++++.+++.+ .+.. .+.|
T Consensus 128 ~~~~~g~~~~~g~~~~~--~~~~~~~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~-~~~~-----~~~l 199 (332)
T 3lzw_A 128 KLELENAEQYEGKNLHY--FVDDLQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRA-HEHS-----VENL 199 (332)
T ss_dssp CCCCTTGGGGBTTTEES--SCSCGGGGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSS-CHHH-----HHHH
T ss_pred CCCCCChhhccCceEEE--ecCCHHHcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCc-cHHH-----HHHH
Confidence 554433221 22222 2222222 378999999999999999999999999999999988754 2222 3457
Q ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEeeC-CCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCC
Q psy9583 622 NKQGLNIILNTKIHDIKINKENVLINYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDN 700 (866)
Q Consensus 622 ~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~ 700 (866)
++.||++++++.+.++..+++...+.+.+. ++. ..++++|.|++|+|++|+.++ ++.+++++ ++|+|.||++
T Consensus 200 ~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g~----~~~~~~D~vv~a~G~~p~~~~--~~~~~~~~-~~g~i~vd~~ 272 (332)
T 3lzw_A 200 HASKVNVLTPFVPAELIGEDKIEQLVLEEVKGDR----KEILEIDDLIVNYGFVSSLGP--IKNWGLDI-EKNSIVVKST 272 (332)
T ss_dssp HHSSCEEETTEEEEEEECSSSCCEEEEEETTSCC----EEEEECSEEEECCCEECCCGG--GGGSSCCE-ETTEEECCTT
T ss_pred hcCCeEEEeCceeeEEecCCceEEEEEEecCCCc----eEEEECCEEEEeeccCCCchH--HhhcCccc-cCCeEEeCCC
Confidence 889999999999999988766555666542 222 357999999999999999987 67888888 5899999999
Q ss_pred CCCCCCCEEEecccC---CCCCcHHHHHHHHHHHHHHHhC
Q psy9583 701 CETNIPNIYAIGDVV---RGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 701 l~Ts~~~VyA~GD~a---~~~~~~~~A~~~g~~aa~~i~g 737 (866)
++|++|+|||+|||+ +.+++++.|+.||+.||.+|+.
T Consensus 273 ~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~ 312 (332)
T 3lzw_A 273 METNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAKA 312 (332)
T ss_dssp SBCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHHH
Confidence 999999999999999 5678999999999999999974
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=320.42 Aligned_cols=299 Identities=17% Similarity=0.220 Sum_probs=215.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+.+|||||||+||+++|.+|++.+++|+|||++++.+..+.+ +......++...
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL--------------------------~~va~G~l~~~~ 95 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLL--------------------------PSAPVGTVDEKS 95 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGG--------------------------GGTTTTSSCGGG
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccch--------------------------hHHhhccccHHH
Confidence 468999999999999999999999999999997321111110 000000111111
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEc------------------CCceEE
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIIN------------------KTKETI 531 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~------------------~~g~~i 531 (866)
...++..+ ...++.+++++.+++..+|. +.+++.+.. .++.++
T Consensus 96 i~~p~~~~----------------~~~~~~~v~~~~~~v~~ID~---~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i 156 (502)
T 4g6h_A 96 IIEPIVNF----------------ALKKKGNVTYYEAEATSINP---DRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEI 156 (502)
T ss_dssp GEEEHHHH----------------HTTCSSCEEEEEEEEEEEEG---GGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEE
T ss_pred hhhhHHHH----------------HHhhcCCeEEEEEEEEEEEh---hhCEEEEeecccceeecccccccccccCCceEE
Confidence 11111111 01234579999998877765 556666542 235789
Q ss_pred EecEEEEecCCCCcCCCCCcCC--CceEecchhhhcccc--------------------CCCeEEEECCcHHHHHHHHHH
Q psy9583 532 TAKYIIIATGSKARSFPGVKFD--ENLILSNKGALEMIN--------------------VPKKLCIIGAGVIGLEIGSIW 589 (866)
Q Consensus 532 ~~d~lViATGs~p~~~p~~~~~--~~~~~t~~~~~~~~~--------------------~~~~vvVIGgG~~glE~A~~l 589 (866)
.||+||||||+.|..++.++.. ...+.+..++..+.. ...+++|||||++|+|+|..|
T Consensus 157 ~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l 236 (502)
T 4g6h_A 157 KYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGEL 236 (502)
T ss_dssp ECSEEEECCCCEECCTTCTTHHHHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred eCCEEEEcCCcccccCCccCcccccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHH
Confidence 9999999999998866544422 112223333332210 124799999999999999998
Q ss_pred HhcC--------------CcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCc
Q psy9583 590 RRLG--------------SEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNV 655 (866)
Q Consensus 590 ~~~g--------------~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~ 655 (866)
.+++ .+|+++++.+++++.+++++++.+++.|+++||++++++.|++++. +++.+.....+|.
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~--~~~~~~~~~~dg~- 313 (502)
T 4g6h_A 237 QDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEE--KQLLAKTKHEDGK- 313 (502)
T ss_dssp HHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEETTEEEEEECS--SEEEEEEECTTSC-
T ss_pred HHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHhcceeeecCceEEEEeC--CceEEEEEecCcc-
Confidence 8653 5799999999999999999999999999999999999999999864 4455554444553
Q ss_pred cceeEEEeccEEEEeeccccCCCCCC-ccccCeeecCCCcEEeCCCCCC-CCCCEEEecccCC--CCCcHHHHHHHHHHH
Q psy9583 656 KTEIITSIFDKLLIAIGRIPNTNNLN-IDKIGLKVNENNFIIVNDNCET-NIPNIYAIGDVVR--GPMLAHKAEEEGIMV 731 (866)
Q Consensus 656 ~~~~~~~~~D~vi~a~G~~p~~~~l~-l~~~gl~~~~~G~i~Vd~~l~T-s~~~VyA~GD~a~--~~~~~~~A~~~g~~a 731 (866)
....++++|.||||+|++|+..... ....+...+.+|+|.||++||| ++|||||+|||+. .|++++.|.+||+++
T Consensus 314 -~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~ 392 (502)
T 4g6h_A 314 -ITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYL 392 (502)
T ss_dssp -EEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHH
T ss_pred -cceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHH
Confidence 1234799999999999999842111 2445666777899999999998 8999999999985 467999999999999
Q ss_pred HHHHhC
Q psy9583 732 AEHISG 737 (866)
Q Consensus 732 a~~i~g 737 (866)
|+||.+
T Consensus 393 A~ni~~ 398 (502)
T 4g6h_A 393 AKNFDK 398 (502)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999953
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=302.90 Aligned_cols=295 Identities=17% Similarity=0.250 Sum_probs=213.4
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
|..++||+|||||+||+++|..|++.|++|+|||+. .+||.|........ +. +++
T Consensus 11 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-------~~gg~~~~~~~~~~----------------~~--~~~ 65 (335)
T 2a87_A 11 HHPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-------SFGGALMTTTDVEN----------------YP--GFR 65 (335)
T ss_dssp CCCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-------SCSCGGGSCSCBCC----------------ST--TCT
T ss_pred cCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-------CCCCceeccchhhh----------------cC--CCC
Confidence 334689999999999999999999999999999974 67887754321110 00 000
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEE-EcCCceEEEecEEEEecCCCCc
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQI-INKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v-~~~~g~~i~~d~lViATGs~p~ 545 (866)
..+....+.. .+...+++.+++++.++...++. .+.+.+ .+.++..+.||+||+|||+.|.
T Consensus 66 ---~~~~~~~~~~-----------~l~~~~~~~~v~~~~~~v~~i~~----~~~~~v~~~~~g~~~~~d~lviAtG~~~~ 127 (335)
T 2a87_A 66 ---NGITGPELMD-----------EMREQALRFGADLRMEDVESVSL----HGPLKSVVTADGQTHRARAVILAMGAAAR 127 (335)
T ss_dssp ---TCBCHHHHHH-----------HHHHHHHHTTCEEECCCEEEEEC----SSSSEEEEETTSCEEEEEEEEECCCEEEC
T ss_pred ---CCCCHHHHHH-----------HHHHHHHHcCCEEEEeeEEEEEe----CCcEEEEEeCCCCEEEeCEEEECCCCCcc
Confidence 0112222222 23345667899999887444443 122333 4456678999999999999887
Q ss_pred CCCCCcCC---CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHH-HHH
Q psy9583 546 SFPGVKFD---ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF-HLL 621 (866)
Q Consensus 546 ~~p~~~~~---~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~-~~l 621 (866)
.++.++.. ...+++..........+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+... +.+. +.+
T Consensus 128 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~------~~~~~~~~ 201 (335)
T 2a87_A 128 YLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRAS------KIMLDRAR 201 (335)
T ss_dssp CCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSC------TTHHHHHH
T ss_pred CCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCcc------HHHHHHHh
Confidence 66544321 1234433333333346899999999999999999999999999999999877531 1222 445
Q ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCC
Q psy9583 622 NKQGLNIILNTKIHDIKINKENVLINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDN 700 (866)
Q Consensus 622 ~~~GV~i~~~~~v~~i~~~~~~~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~ 700 (866)
++.||++++++.++++..+++...+.+.. .+|. ..++++|.|++|+|++|+++++ + .+++++++|+|.||++
T Consensus 202 ~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~----~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i~vd~~ 274 (335)
T 2a87_A 202 NNDKIRFLTNHTVVAVDGDTTVTGLRVRDTNTGA----ETTLPVTGVFVAIGHEPRSGLV--R-EAIDVDPDGYVLVQGR 274 (335)
T ss_dssp HCTTEEEECSEEEEEEECSSSCCEEEEEEETTSC----CEEECCSCEEECSCEEECCTTT--B-TTBCBCTTSCBCCSTT
T ss_pred ccCCcEEEeCceeEEEecCCcEeEEEEEEcCCCc----eEEeecCEEEEccCCccChhHh--h-cccccCCCccEEeCCC
Confidence 67899999999999998765322344432 1332 2479999999999999999884 3 4788888999999996
Q ss_pred -CCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q psy9583 701 -CETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 701 -l~Ts~~~VyA~GD~a~~-~~~~~~A~~~g~~aa~~i~g 737 (866)
++|++|+|||+|||++. ++.+..|..+|+.||.+|..
T Consensus 275 ~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~ 313 (335)
T 2a87_A 275 TTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAER 313 (335)
T ss_dssp SSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHH
Confidence 68999999999999976 57899999999999999863
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=297.95 Aligned_cols=297 Identities=21% Similarity=0.281 Sum_probs=213.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
++||+|||||++|+++|..|++.|++|+|||+. ......+||.|........ +. +++
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~--~~~~~~~gg~~~~~~~~~~----------------~~--~~~--- 64 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW--MANDIAPGGQLTTTTDVEN----------------FP--GFP--- 64 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS--SBTTBCTTCGGGGCSEECC----------------ST--TCT---
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEecc--CccccCCCceeeecccccc----------------CC--CCc---
Confidence 589999999999999999999999999999982 0011456776643221100 00 000
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
..++...+. ..+...+++.+++++.++...++. ..+.+.+.+ ++..+.||+||+|||+.|..++.
T Consensus 65 ~~~~~~~~~-----------~~l~~~~~~~gv~~~~~~v~~i~~---~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~~~~ 129 (333)
T 1vdc_A 65 EGILGVELT-----------DKFRKQSERFGTTIFTETVTKVDF---SSKPFKLFT-DSKAILADAVILAIGAVAKRLSF 129 (333)
T ss_dssp TCEEHHHHH-----------HHHHHHHHHTTCEEECCCCCEEEC---SSSSEEEEC-SSEEEEEEEEEECCCEEECCCCC
T ss_pred cCCCHHHHH-----------HHHHHHHHHCCCEEEEeEEEEEEE---cCCEEEEEE-CCcEEEcCEEEECCCCCcCCCCC
Confidence 011122222 123445667899998887444433 234455655 56789999999999999876654
Q ss_pred CcCCC-------ceEecchhhhccc--cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHH-H
Q psy9583 550 VKFDE-------NLILSNKGALEMI--NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAF-H 619 (866)
Q Consensus 550 ~~~~~-------~~~~t~~~~~~~~--~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~-~ 619 (866)
++... ..+.+........ ..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. . +.+. +
T Consensus 130 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~--~----~~~~~~ 203 (333)
T 1vdc_A 130 VGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--S----KIMQQR 203 (333)
T ss_dssp BTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--C----HHHHHH
T ss_pred CCccccccccccCcEEEeccCccchhhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc--c----HHHHHH
Confidence 43222 2233332222222 4579999999999999999999999999999999987643 2 2233 4
Q ss_pred HHHHcCCEEEeCceEEEEEEcCC--eE-EEEEeeC-CCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcE
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKE--NV-LINYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI 695 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~--~~-~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 695 (866)
.+++.||++++++.+.++..+++ .+ .+.+.+. +|. ..++++|.|++|+|++|+.+++ + .+++++++|+|
T Consensus 204 ~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~----~~~i~~D~vi~a~G~~p~~~~~--~-~~l~~~~~G~i 276 (333)
T 1vdc_A 204 ALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGD----VSDLKVSGLFFAIGHEPATKFL--D-GGVELDSDGYV 276 (333)
T ss_dssp HHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCC----EEEEECSEEEECSCEEESCGGG--T-TSSCBCTTSCB
T ss_pred HHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCc----eEEEecCEEEEEeCCccchHHh--h-ccccccCCCCE
Confidence 45678999999999999998764 33 3555431 332 3479999999999999999874 3 47888888999
Q ss_pred EeCCC-CCCCCCCEEEecccCCC-CCcHHHHHHHHHHHHHHHhC
Q psy9583 696 IVNDN-CETNIPNIYAIGDVVRG-PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 696 ~Vd~~-l~Ts~~~VyA~GD~a~~-~~~~~~A~~~g~~aa~~i~g 737 (866)
.||++ ++|+.|+|||+|||++. ++.+..|..+|+.||.+|..
T Consensus 277 ~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 320 (333)
T 1vdc_A 277 VTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEH 320 (333)
T ss_dssp CCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHH
Confidence 99997 68999999999999986 47899999999999999963
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=310.54 Aligned_cols=295 Identities=23% Similarity=0.321 Sum_probs=217.2
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
..+||+||||||||++||.+|++.|++|+|||+ .+||.|....+++.. . +.+
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--------~~GG~~~~~~~~~~~----------------~--~~~-- 262 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--------RFGGQVLDTVDIENY----------------I--SVP-- 262 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--------STTGGGTTCSCBCCB----------------T--TBS--
T ss_pred CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--------CCCCccccccccccc----------------C--CCC--
Confidence 368999999999999999999999999999985 468887543322210 0 000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEE-EeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAI-FTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v-~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
......+ ...+...+++.+++++.++.+ .++........+.+..++|..+.||+||+|||+.|+.+
T Consensus 263 --~~~~~~l-----------~~~l~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~ 329 (521)
T 1hyu_A 263 --KTEGQKL-----------AGALKAHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNM 329 (521)
T ss_dssp --SBCHHHH-----------HHHHHHHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred --CCCHHHH-----------HHHHHHHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCC
Confidence 1112222 122445567889999998444 35321111234566656777899999999999988765
Q ss_pred CCCcCC---CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHH-
Q psy9583 548 PGVKFD---ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNK- 623 (866)
Q Consensus 548 p~~~~~---~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~- 623 (866)
+.++.. ...++...........+++++|||+|++|+|+|..|++.|.+|+++++.+.+.. + ..+.+.|++
T Consensus 330 ~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~--~----~~l~~~l~~~ 403 (521)
T 1hyu_A 330 NVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--D----QVLQDKVRSL 403 (521)
T ss_dssp CCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS--C----HHHHHHHTTC
T ss_pred CCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc--C----HHHHHHHhcC
Confidence 433321 223333332222223579999999999999999999999999999999988764 2 345666777
Q ss_pred cCCEEEeCceEEEEEEcCCeE-EEEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCC
Q psy9583 624 QGLNIILNTKIHDIKINKENV-LINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~~~~-~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l 701 (866)
.||++++++.++++..+++.+ .+.+.+ .+|. ..++++|.|++|+|++||++++ +. .++++++|+|.||+++
T Consensus 404 ~gV~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~----~~~i~~D~vi~a~G~~pn~~~l--~~-~l~~~~~G~I~Vd~~~ 476 (521)
T 1hyu_A 404 KNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGD----IHSVALAGIFVQIGLLPNTHWL--EG-ALERNRMGEIIIDAKC 476 (521)
T ss_dssp TTEEEECSEEEEEEEECSSSEEEEEEEETTTCC----EEEEECSEEEECCCEEESCGGG--TT-TSCBCTTSCBCCCTTC
T ss_pred CCcEEEeCCEEEEEEcCCCcEEEEEEEeCCCCc----eEEEEcCEEEECcCCCCCchHH--hh-hhccCCCCcEEeCCCC
Confidence 699999999999998865544 455653 2232 3578999999999999999874 44 4788889999999999
Q ss_pred CCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHhC
Q psy9583 702 ETNIPNIYAIGDVVRGP-MLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 702 ~Ts~~~VyA~GD~a~~~-~~~~~A~~~g~~aa~~i~g 737 (866)
+|++|+|||+|||++.+ +.+..|+.+|+.||.+|..
T Consensus 477 ~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 513 (521)
T 1hyu_A 477 ETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFD 513 (521)
T ss_dssp BCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHH
Confidence 99999999999999865 6899999999999999864
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=297.58 Aligned_cols=316 Identities=15% Similarity=0.197 Sum_probs=211.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCC-eEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc-c
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN-T 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~-~ 467 (866)
++||+|||||+||+++|..|++.|+ +|+|||+. + +||.|.+... +......... ...+++. .
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~------~-~Gg~~~~~~~---~~~~~~~~~~------~~~~g~~~~ 67 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKG------T-VGHSFKHWPK---STRTITPSFT------SNGFGMPDM 67 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSS------S-TTHHHHTSCT---TCBCSSCCCC------CGGGTCCCT
T ss_pred cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecC------C-CCCccccCcc---cccccCcchh------cccCCchhh
Confidence 4899999999999999999999999 99999997 4 8888765321 1100000000 0111210 0
Q ss_pred cccccCHHHHHHHHHHH--HHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 468 QNVTLNLQKMLERKNNI--IKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
.....++...+...... ...+...+..++++.+++++.++.+. ++. ..+.+.+.+.++ .+.||+||+|||+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~g-~~~~d~vVlAtG~~~ 143 (369)
T 3d1c_A 68 NAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISA---DDAYYTIATTTE-TYHADYIFVATGDYN 143 (369)
T ss_dssp TCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEE---CSSSEEEEESSC-CEEEEEEEECCCSTT
T ss_pred hhccccccccccccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEE---CCCeEEEEeCCC-EEEeCEEEECCCCCC
Confidence 00000110000000000 01112234556677899999887555 443 212455655555 689999999999976
Q ss_pred cCCCCCcCCCceEecchhhhcccc-CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-------cccHHHHHH
Q psy9583 545 RSFPGVKFDENLILSNKGALEMIN-VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-------TVDEEIAKK 616 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~~~~~~~~~-~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-------~~d~~~~~~ 616 (866)
. |..++ ..++++..+..... ..++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++ .+++...+.
T Consensus 144 ~-p~ip~---~~~~~~~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~ 219 (369)
T 3d1c_A 144 F-PKKPF---KYGIHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQR 219 (369)
T ss_dssp S-BCCCS---SSCEEGGGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHH
T ss_pred c-cCCCC---CceechhhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHH
Confidence 4 11111 23344444444333 357999999999999999999999999999999988774 256777889
Q ss_pred HHHHHHHcC-CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcE
Q psy9583 617 AFHLLNKQG-LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI 695 (866)
Q Consensus 617 l~~~l~~~G-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 695 (866)
+.+.|++.| |++++++.|.+++.+++...+.+. +|. ....+|.||+|+|++|+.+++ .+.+++ +++|++
T Consensus 220 l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~--~g~-----~~~~~d~vi~a~G~~~~~~~~--~~~~~~-~~~g~i 289 (369)
T 3d1c_A 220 LGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFD--SGQ-----SVHTPHEPILATGFDATKNPI--VQQLFV-TTNQDI 289 (369)
T ss_dssp HHHHHHTTCCEEEECSCCEEEEEEETTEEEEEES--SSC-----CEEESSCCEECCCBCGGGSHH--HHHHSC-CTTSCC
T ss_pred HHHHHhhCCcEEEecCcEEEEEEecCCceEEEec--CCe-----EeccCCceEEeeccCCccchh--hhhhcc-CCCCCE
Confidence 999999997 999999999999876666666664 554 133469999999999999763 444566 678999
Q ss_pred EeCCC-CCCCCCCEEEecccCCCCC----cHHHHHHHHHHHHHHHhCCC
Q psy9583 696 IVNDN-CETNIPNIYAIGDVVRGPM----LAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 696 ~Vd~~-l~Ts~~~VyA~GD~a~~~~----~~~~A~~~g~~aa~~i~g~~ 739 (866)
.||++ ++|++|+|||+|||+..+. .++.+.+||+++|++|.+..
T Consensus 290 ~v~~~~~~t~~~~v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~ 338 (369)
T 3d1c_A 290 KLTTHDESTRYPNIFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQRE 338 (369)
T ss_dssp CBCTTSBBSSSTTEEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHT
T ss_pred EechhhcccCCCCeEEeccccccCCeeEEEEehhhHHHHHHHHHHhccc
Confidence 99986 6799999999999997432 35678889999999998753
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-31 Score=303.71 Aligned_cols=285 Identities=21% Similarity=0.275 Sum_probs=205.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.+||+||||||||++||..|++.|++|+|||+. +.+||.+.+ +++...
T Consensus 122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~------~~~GG~l~~--------------------------gip~~~ 169 (456)
T 2vdc_G 122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRY------DRMGGLLVY--------------------------GIPGFK 169 (456)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSS------SSCSTHHHH--------------------------TSCTTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc------CCCCCeeee--------------------------cCCCcc
Confidence 489999999999999999999999999999997 577886421 221110
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC-CcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK-ARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~-p~~~p 548 (866)
.+ ..++. ....++++.|++++.++.+. ..+.+ ++. .+.||+||||||+. |+.++
T Consensus 170 --~~-~~~~~-----------~~~~~l~~~gv~~~~~~~v~--------~~v~~--~~~-~~~~d~vvlAtG~~~~~~~~ 224 (456)
T 2vdc_G 170 --LE-KSVVE-----------RRVKLLADAGVIYHPNFEVG--------RDASL--PEL-RRKHVAVLVATGVYKARDIK 224 (456)
T ss_dssp --SC-HHHHH-----------HHHHHHHHTTCEEETTCCBT--------TTBCH--HHH-HSSCSEEEECCCCCEECCTT
T ss_pred --CC-HHHHH-----------HHHHHHHHCCcEEEeCCEec--------cEEEh--hHh-HhhCCEEEEecCCCCCCCCC
Confidence 00 11111 12345677899988776432 11111 112 35699999999996 55444
Q ss_pred CCcCCCceEecchhhhc------------------cccCCCeEEEECCcHHHHHHHHHHHhcCCc-EEEEecCCcC-CCc
Q psy9583 549 GVKFDENLILSNKGALE------------------MINVPKKLCIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNF-LNT 608 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~------------------~~~~~~~vvVIGgG~~glE~A~~l~~~g~~-Vtli~~~~~~-l~~ 608 (866)
.++.+...+++..+++. ....+++|+|||||.+|+|+|..+.+.|.+ |++++|++.. ++.
T Consensus 225 ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~ 304 (456)
T 2vdc_G 225 APGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPG 304 (456)
T ss_dssp CSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSS
T ss_pred CCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCC
Confidence 44433344554322211 113578999999999999999999999984 9999999876 666
Q ss_pred ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEe-------eCCCCc-----cceeEEEeccEEEEeecccc
Q psy9583 609 VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYS-------NKSTNV-----KTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 609 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~-------~~~g~~-----~~~~~~~~~D~vi~a~G~~p 675 (866)
.+.+ .+.+++.||++++++.++++..++ .+. +.+. +.+|+. .++..++++|.||+|+|+.|
T Consensus 305 ~~~e-----~~~~~~~Gv~~~~~~~~~~i~~~g-~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p 378 (456)
T 2vdc_G 305 SQRE-----VAHAEEEGVEFIWQAAPEGFTGDT-VVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEP 378 (456)
T ss_dssp CHHH-----HHHHHHTTCEEECCSSSCCEEEEE-EEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEEC
T ss_pred CHHH-----HHHHHHCCCEEEeCCCceEEeCCC-cEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCC
Confidence 5544 345778899999999998887532 221 1111 112321 12345799999999999999
Q ss_pred CCCCCCccccCeeecCCCcEEeCCC-CCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 676 NTNNLNIDKIGLKVNENNFIIVNDN-CETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 676 ~~~~l~l~~~gl~~~~~G~i~Vd~~-l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
+...+.++.++++++++|+|.||++ ++|++|+|||+|||+.++.++..|+.+|+.||.+|..
T Consensus 379 ~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~ 441 (456)
T 2vdc_G 379 EDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHA 441 (456)
T ss_dssp CCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCCSHHHHHHHHHHHHHHHHH
T ss_pred CcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCchHHHHHHHHHHHHHHHHHH
Confidence 8762115778999999999999998 9999999999999999999999999999999999974
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-31 Score=291.57 Aligned_cols=304 Identities=15% Similarity=0.175 Sum_probs=203.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
++||+|||||++|+++|..|++.|++|+|||+. +.+||.|.+ +.|...+....... .+..+..+...
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~------~~~gg~~~~--~~~~~~~~~~~~~~-----~~~~~~~~~~~ 69 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAE------ASPGGAWQH--AWHSLHLFSPAGWS-----SIPGWPMPASQ 69 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCS------SSSSGGGGG--SCTTCBCSSCGGGS-----CCSSSCCCCCS
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECC------CCCCCcccC--CCCCcEecCchhhh-----hCCCCCCCCCc
Confidence 489999999999999999999999999999998 678998864 23322211111100 01111111100
Q ss_pred c-ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEE-EEcCCceEEEecEEEEecCC--CC
Q psy9583 470 V-TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQ-IINKTKETITAKYIIIATGS--KA 544 (866)
Q Consensus 470 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~-v~~~~g~~i~~d~lViATGs--~p 544 (866)
. ......+ ...+...+++.+++++.++.+. ++. ..+.+. +.++++ ++.||+||+|||. .|
T Consensus 70 ~~~~~~~~~-----------~~~l~~~~~~~~~~~~~~~~v~~i~~---~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~ 134 (357)
T 4a9w_A 70 GPYPARAEV-----------LAYLAQYEQKYALPVLRPIRVQRVSH---FGERLRVVARDGR-QWLARAVISATGTWGEA 134 (357)
T ss_dssp SSSCBHHHH-----------HHHHHHHHHHTTCCEECSCCEEEEEE---ETTEEEEEETTSC-EEEEEEEEECCCSGGGB
T ss_pred cCCCCHHHH-----------HHHHHHHHHHcCCEEEcCCEEEEEEE---CCCcEEEEEeCCC-EEEeCEEEECCCCCCCC
Confidence 0 1111222 2224556777899988876555 332 335677 777666 8999999999995 45
Q ss_pred cCCCCCcCC--CceEecchhhhc-cccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecC-CcCCCcc--cHHHHHHHH
Q psy9583 545 RSFPGVKFD--ENLILSNKGALE-MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS-SNFLNTV--DEEIAKKAF 618 (866)
Q Consensus 545 ~~~p~~~~~--~~~~~t~~~~~~-~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~-~~~l~~~--d~~~~~~l~ 618 (866)
..++.++.. ....++..+... ....+++++|||+|.+|+|+|..|.+.| +|+++.+. +.+++.. ...+...+.
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~ 213 (357)
T 4a9w_A 135 YTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERAT 213 (357)
T ss_dssp CCCCCTTGGGCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC--
T ss_pred CCCCCCCccccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHH
Confidence 444433321 112333322222 2335799999999999999999999998 69999988 4555532 344444333
Q ss_pred HHHH----------------------------HcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEe
Q psy9583 619 HLLN----------------------------KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIA 670 (866)
Q Consensus 619 ~~l~----------------------------~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a 670 (866)
+.+. +.|+ +..+..+.++..+ + +.+ .+|. ++++|.|++|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-i~~~~~v~~~~~~--~--v~~--~~g~------~i~~D~vi~a 280 (357)
T 4a9w_A 214 ERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGV-LAAVPPPARFSPT--G--MQW--ADGT------ERAFDAVIWC 280 (357)
T ss_dssp --------------------CBCCCHHHHHHHHTTC-CCEECCCSEEETT--E--EEC--TTSC------EEECSEEEEC
T ss_pred HHHhccccccCCCcccccccCcccChhHHHHHhcCc-eEEecCcceEeCC--e--eEE--CCCC------EecCCEEEEC
Confidence 3333 3344 4455566665532 2 333 3665 8999999999
Q ss_pred eccccCCCCCCccccCeeecCCCcEEeCCC--CCCCCCCEEEec--ccCC-CCCcHHHHHHHHHHHHHHHhCC
Q psy9583 671 IGRIPNTNNLNIDKIGLKVNENNFIIVNDN--CETNIPNIYAIG--DVVR-GPMLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 671 ~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~--l~Ts~~~VyA~G--D~a~-~~~~~~~A~~~g~~aa~~i~g~ 738 (866)
+|++|++++ +++.++. +++|+|.||++ ++|++|+|||+| ||++ .+..+..|..||+.+|++|...
T Consensus 281 ~G~~p~~~~--l~~~gl~-~~~G~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~ 350 (357)
T 4a9w_A 281 TGFRPALSH--LKGLDLV-TPQGQVEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAY 350 (357)
T ss_dssp CCBCCCCGG--GTTTTCB-CTTSCBCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHH
T ss_pred CCcCCCCcc--cCccccc-CCCCCccccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 999999987 5788888 77899999999 899999999999 6665 5678888999999999999753
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-32 Score=335.23 Aligned_cols=315 Identities=17% Similarity=0.238 Sum_probs=225.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCC-eEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
.+||+||||||||++||.+|++.|+ +|+|||+. +.+||.+. .++|.. +++
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~------~~~GG~~~--~~ip~~-------------------~~~-- 237 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQ------EYVGGLST--SEIPQF-------------------RLP-- 237 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS------SSCSTHHH--HTSCTT-------------------TSC--
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCC------CCCCcccc--ccCCcc-------------------cCC--
Confidence 4899999999999999999999999 79999997 67888642 122211 110
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCC-CCcCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGS-KARSF 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs-~p~~~ 547 (866)
.....+ ...++++.||+++.++.+.. +.+.+ +++..+.||+||||||+ .|+.+
T Consensus 238 ------~~~~~~-----------~~~~~~~~gv~~~~~~~v~~-------~~v~~--~~~~~~~~d~vvlAtGa~~p~~l 291 (1025)
T 1gte_A 238 ------YDVVNF-----------EIELMKDLGVKIICGKSLSE-------NEITL--NTLKEEGYKAAFIGIGLPEPKTD 291 (1025)
T ss_dssp ------HHHHHH-----------HHHHHHTTTCEEEESCCBST-------TSBCH--HHHHHTTCCEEEECCCCCEECCC
T ss_pred ------HHHHHH-----------HHHHHHHCCcEEEcccEecc-------ceEEh--hhcCccCCCEEEEecCCCCCCCC
Confidence 011111 13456778999988876521 12222 22345789999999999 47765
Q ss_pred CCC-cCC-CceEecchhhhc----------------cccCCCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCC-cCCC
Q psy9583 548 PGV-KFD-ENLILSNKGALE----------------MINVPKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSS-NFLN 607 (866)
Q Consensus 548 p~~-~~~-~~~~~t~~~~~~----------------~~~~~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~-~~l~ 607 (866)
+.+ +.. ...+++..+++. +...+++|+|||||++|+|+|..+.++|. +|+++++.+ .+++
T Consensus 292 ~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~ 371 (1025)
T 1gte_A 292 DIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR 371 (1025)
T ss_dssp GGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC
T ss_pred CCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCC
Confidence 432 222 245676655443 12346799999999999999999999996 899999988 4567
Q ss_pred cccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEee----CCCC---ccceeEEEeccEEEEeeccccCCCC
Q psy9583 608 TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSN----KSTN---VKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 608 ~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~----~~g~---~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.+++++ +.+++.||++++++.+.++..+++.+. +.+.. .+|. ..++..++++|.||+|+|++|+...
T Consensus 372 ~~~~e~-----~~~~~~Gv~~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~ 446 (1025)
T 1gte_A 372 AVPEEV-----ELAKEEKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPK 446 (1025)
T ss_dssp SCHHHH-----HHHHHTTCEEECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHH
T ss_pred CCHHHH-----HHHHHcCCEEEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchh
Confidence 776664 457788999999999999987555442 33321 1231 0122357999999999999875433
Q ss_pred CCccc-cCeeecCCCcEEeCC-CCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC---CCCCCCCccEEEEcc
Q psy9583 680 LNIDK-IGLKVNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK---HSINFNALPFVIYTF 754 (866)
Q Consensus 680 l~l~~-~gl~~~~~G~i~Vd~-~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~---~~~~~~~~p~~~~~~ 754 (866)
+ ++. .|++++++|+|.||+ ++||++|+|||+|||++++.+++.|+.||+.||++|.+.. ...++...|.+.|+.
T Consensus 447 l-~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~ 525 (1025)
T 1gte_A 447 V-KEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFY 525 (1025)
T ss_dssp H-HHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCC
T ss_pred h-hhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCccccc
Confidence 3 333 589999899999997 8999999999999999989999999999999999997421 122344556666777
Q ss_pred CceeeeecCHH
Q psy9583 755 PEIASVGKTEQ 765 (866)
Q Consensus 755 ~~~a~vGl~e~ 765 (866)
|+++.++++.+
T Consensus 526 ~ev~~v~ls~~ 536 (1025)
T 1gte_A 526 TPVDLVDISVE 536 (1025)
T ss_dssp CGGGGCCCCEE
T ss_pred cccccccceee
Confidence 77766665543
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=289.95 Aligned_cols=295 Identities=18% Similarity=0.200 Sum_probs=205.1
Q ss_pred cccccceeeecCCccHHHHHHHHHH---CCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQ---LGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEY 463 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~---~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~ 463 (866)
|+.++||+|||||+||++||..|++ .|++|+|||+.+ .+. ..|..... . .
T Consensus 1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~------~~~-------~~~~~~~~--------~------~ 53 (437)
T 3sx6_A 1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND------YFQ-------FVPSNPWV--------G------V 53 (437)
T ss_dssp CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS------EEE-------CGGGHHHH--------H------H
T ss_pred CCCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC------CCc-------ccCCcccc--------c------c
Confidence 3335799999999999999999999 799999999972 110 11111000 0 0
Q ss_pred CccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCC
Q psy9583 464 GINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSK 543 (866)
Q Consensus 464 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~ 543 (866)
+.. +. +.+...+..++++.+++++.+.+..++. ..+.+.+ ++++++.||+||+|||+.
T Consensus 54 g~~------~~-----------~~~~~~l~~~~~~~gv~~~~~~v~~id~---~~~~V~~--~~g~~i~~d~lviAtG~~ 111 (437)
T 3sx6_A 54 GWK------ER-----------DDIAFPIRHYVERKGIHFIAQSAEQIDA---EAQNITL--ADGNTVHYDYLMIATGPK 111 (437)
T ss_dssp TSS------CH-----------HHHEEECHHHHHTTTCEEECSCEEEEET---TTTEEEE--TTSCEEECSEEEECCCCE
T ss_pred Ccc------CH-----------HHHHHHHHHHHHHCCCEEEEeEEEEEEc---CCCEEEE--CCCCEEECCEEEECCCCC
Confidence 000 00 1111223455677899999887776655 3344444 567789999999999999
Q ss_pred CcCCCCCcCCC--c---eEecchhhhcccc------CCCeEEEECCcHH----H--HHHH----HHHHhcCCc-----EE
Q psy9583 544 ARSFPGVKFDE--N---LILSNKGALEMIN------VPKKLCIIGAGVI----G--LEIG----SIWRRLGSE-----VT 597 (866)
Q Consensus 544 p~~~p~~~~~~--~---~~~t~~~~~~~~~------~~~~vvVIGgG~~----g--lE~A----~~l~~~g~~-----Vt 597 (866)
|..++.++... . .+.+..++..+.. ..++++|||+|.. | +|+| ..+.+.|.+ |+
T Consensus 112 ~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vt 191 (437)
T 3sx6_A 112 LAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFT 191 (437)
T ss_dssp ECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEE
T ss_pred cCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEE
Confidence 87543333221 1 2345555444321 1456788888554 3 7777 666677875 99
Q ss_pred EEecCCcCC----CcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 598 ILEMSSNFL----NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 598 li~~~~~~l----~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
++++.+.+. +.+ ++....+++.|++.||++++++.|++++. +++.+.....+|. ..+..++++|.+++++|+
T Consensus 192 lv~~~~~~~~~~l~~~-~~~~~~~~~~l~~~gI~~~~~~~v~~v~~--~~v~~~~~~~~g~-~~~~~~i~~D~vv~~~g~ 267 (437)
T 3sx6_A 192 FITSEPYIGHLGIQGV-GDSKGILTKGLKEEGIEAYTNCKVTKVED--NKMYVTQVDEKGE-TIKEMVLPVKFGMMIPAF 267 (437)
T ss_dssp EEESSSSTTCTTTTCC-TTHHHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEEECTTSC-EEEEEEEECSEEEEECCE
T ss_pred EEcCCccccccccCcc-hHHHHHHHHHHHHCCCEEEcCCEEEEEEC--CeEEEEecccCCc-cccceEEEEeEEEEcCCC
Confidence 999998873 333 35788899999999999999999999974 3444433223332 111347999999999999
Q ss_pred ccCCCCCCccccCeeecCCCcEEeCCCCCC-CCCCEEEecccCCC------------CCcHHHHHHHHHHHHHHHhC
Q psy9583 674 IPNTNNLNIDKIGLKVNENNFIIVNDNCET-NIPNIYAIGDVVRG------------PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 674 ~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~T-s~~~VyA~GD~a~~------------~~~~~~A~~~g~~aa~~i~g 737 (866)
+|+..+ .+..++ .+++|+|.||+++|| ++|||||+|||+.. |++++.|..||++||+||..
T Consensus 268 ~~~~~~--~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~ 341 (437)
T 3sx6_A 268 KGVPAV--AGVEGL-CNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKA 341 (437)
T ss_dssp ECCHHH--HTSTTT-BCTTSCBCBCTTSBBSSCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCchhh--hccccc-cCCCCcEEeChhccCCCCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 887654 233566 577899999999998 99999999999973 56899999999999999973
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=277.68 Aligned_cols=302 Identities=15% Similarity=0.164 Sum_probs=202.5
Q ss_pred cceeeecCCccHHHHHHHHHH---CCCe---EEEEeccCCCcccccCCCcccee---ccccchhHHHhhHHHHHHhhhhh
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQ---LGFK---TACIDEWKDNEENFALGGTCTNV---GCIPSKALLQTSHSFENVKNSFF 461 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~---~g~~---V~liek~~~~~~~~~~GG~~~~~---g~~P~~~~~~~~~~~~~~~~~~~ 461 (866)
+||+|||||+||++||..|++ .|++ |+|||+. +.+||+|.+. ||.|...... ...+..+..+..
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~------~~~GG~w~~~~~~g~~~~g~~~~-~~~y~~l~~~~~ 75 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQ------ADWGGQWNYTWRTGLDENGEPVH-SSMYRYLWSNGP 75 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSS------SSSCGGGSCCSCCSBCTTSSBCC-CCCCTTCBCSSC
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcC------CCCCCEeecCCCCCccccCCCCc-CccccchhhcCC
Confidence 799999999999999999999 9999 9999997 6799999763 4433110000 000000000000
Q ss_pred --hcCcccc----------ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcE--EEEeEEEE-eccccC-cccEEEEEc
Q psy9583 462 --EYGINTQ----------NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK--FFHGHAIF-TGKIQN-NFHEIQIIN 525 (866)
Q Consensus 462 --~~gi~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~--v~~g~~v~-~~~~~~-~~~~v~v~~ 525 (866)
.++++.. ........+. ..+...+++.+++ +.+++.+. ++..+. ..+.+.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~ 144 (464)
T 2xve_A 76 KECLEFADYTFDEHFGKPIASYPPREVLW-----------DYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQD 144 (464)
T ss_dssp GGGTCBTTBCHHHHHSSCCCSSCBHHHHH-----------HHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEE
T ss_pred hhhcccCCCCCCcccCCCCCCCCCHHHHH-----------HHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEE
Confidence 0000000 0011122222 2234455666776 77666555 332111 123444433
Q ss_pred -CCc--eEEEecEEEEecC--CCCcCCCCCcCCC--ceEecchhhhccc-cCCCeEEEECCcHHHHHHHHHHHhcCCcEE
Q psy9583 526 -KTK--ETITAKYIIIATG--SKARSFPGVKFDE--NLILSNKGALEMI-NVPKKLCIIGAGVIGLEIGSIWRRLGSEVT 597 (866)
Q Consensus 526 -~~g--~~i~~d~lViATG--s~p~~~p~~~~~~--~~~~t~~~~~~~~-~~~~~vvVIGgG~~glE~A~~l~~~g~~Vt 597 (866)
.++ .++.||+||+||| +.|+.|+.++.+. ..++++.++.... ..+++|+|||+|.+|+|+|..|++.|.+|+
T Consensus 145 ~~~g~~~~~~~d~VVvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~ 224 (464)
T 2xve_A 145 HTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKL 224 (464)
T ss_dssp TTTTEEEEEEESEEEECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEE
T ss_pred cCCCceEEEEcCEEEECCCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEE
Confidence 123 6789999999999 7888665444332 2345555554433 358999999999999999999999999999
Q ss_pred EEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 598 ILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 598 li~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
++++++.+++..- ..||+++ ..|++++. ++ +.+. +|. ++++|.||+|+|++|+.
T Consensus 225 li~~~~~~~~~~~------------~~~V~~~--~~V~~i~~--~~--V~~~--dG~------~i~~D~Vi~atG~~p~~ 278 (464)
T 2xve_A 225 ISCYRTAPMGYKW------------PENWDER--PNLVRVDT--EN--AYFA--DGS------SEKVDAIILCTGYIHHF 278 (464)
T ss_dssp EEECSSCCCCCCC------------CTTEEEC--SCEEEECS--SE--EEET--TSC------EEECSEEEECCCBCCCC
T ss_pred EEEECCCCCCCCC------------CCceEEc--CCeEEEeC--CE--EEEC--CCC------EEeCCEEEECCCCCCCC
Confidence 9999988765321 2478877 78888853 33 4454 675 78999999999999999
Q ss_pred CCCCccccCeeecCCCcEEeCCC---CCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 678 NNLNIDKIGLKVNENNFIIVNDN---CETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 678 ~~l~l~~~gl~~~~~G~i~Vd~~---l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
++|. +.+++.++++|++ +|.+ ++|+.|+|||+|||+.. ..++.|..||+.+|+++.|..
T Consensus 279 ~~l~-~~~gl~~~~~~~v-~~~~~~~~~t~~p~i~aiGd~~~~-~~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 279 PFLN-DDLRLVTNNRLWP-LNLYKGVVWEDNPKFFYIGMQDQW-YSFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp TTBC-TTTCCCCCSSSCC-SSEETTTEESSSTTEEECSCSCCS-SCHHHHHHHHHHHHHHHTTSS
T ss_pred CCcC-cccccccCCCccc-ccccceEecCCCCCEEEEeCcccc-cchHHHHHHHHHHHHHHcCCC
Confidence 9863 3468888766565 4533 57999999999999864 578999999999999999863
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=286.97 Aligned_cols=287 Identities=20% Similarity=0.205 Sum_probs=193.5
Q ss_pred cceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++|||||||+||++||.+|++.+ ++|+|||++++ . ...|.. +.-. ...+...
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~------~-------~~~p~l--------~~v~-----~g~~~~~ 56 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY------F-------GFTPAF--------PHLA-----MGWRKFE 56 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE------E-------ECGGGH--------HHHH-----HTCSCGG
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC------C-------ccCccH--------HHHh-----cCCCCHH
Confidence 57999999999999999999875 78999998731 1 011110 0000 0011111
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC-C
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS-F 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~-~ 547 (866)
....+ +..++++.+|+++.+++..+|. +.+++.+ ++|+++.||+||||||+++.. +
T Consensus 57 ~i~~~------------------~~~~~~~~gv~~i~~~v~~Id~---~~~~V~~--~~g~~i~YD~LViAtG~~~~~~i 113 (430)
T 3hyw_A 57 DISVP------------------LAPLLPKFNIEFINEKAESIDP---DANTVTT--QSGKKIEYDYLVIATGPKLVFGA 113 (430)
T ss_dssp GSEEE------------------STTTGGGGTEEEECSCEEEEET---TTTEEEE--TTCCEEECSEEEECCCCEEECCS
T ss_pred Hhhhc------------------HHHHHHHCCcEEEEeEEEEEEC---CCCEEEE--CCCCEEECCEEEEeCCCCccCCc
Confidence 11111 1224566799999998877766 4455544 677899999999999997541 2
Q ss_pred CCCcCCCceEecchhhhcccc------CCCeEEEECCcH------HHHHH----HHHHHhcC----CcEEEEecCCcCC-
Q psy9583 548 PGVKFDENLILSNKGALEMIN------VPKKLCIIGAGV------IGLEI----GSIWRRLG----SEVTILEMSSNFL- 606 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~~~------~~~~vvVIGgG~------~glE~----A~~l~~~g----~~Vtli~~~~~~l- 606 (866)
|+.......+.+.+++.++.+ ..+.++|+||+. .+.|+ +..+.+.| .+|++++..+.+.
T Consensus 114 ~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~ 193 (430)
T 3hyw_A 114 EGQEENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGH 193 (430)
T ss_dssp BTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTC
T ss_pred cCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhh
Confidence 332222233445555543321 133455555542 22344 34455555 4688888877653
Q ss_pred --CcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccc
Q psy9583 607 --NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684 (866)
Q Consensus 607 --~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~ 684 (866)
+..++...+.+++.|+++||++++++.|++++. +.+ .++..+|. ..++++|.+++++|++|+... ..
T Consensus 194 ~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~--~~~--~~~~~~g~----~~~i~~d~vi~~~G~~~~~~~---~~ 262 (430)
T 3hyw_A 194 FGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEP--DKV--IYEDLNGN----THEVPAKFTMFMPSFQGPEVV---AS 262 (430)
T ss_dssp TTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECS--SEE--EEECTTSC----EEEEECSEEEEECEEECCHHH---HT
T ss_pred ccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeC--Cce--EEEeeCCC----ceEeecceEEEeccCCCchHH---Hh
Confidence 345677788899999999999999999999864 333 34433443 458999999999999997432 33
Q ss_pred c--CeeecCCCcEEeCCCCC-CCCCCEEEecccCCC------------CCcHHHHHHHHHHHHHHHhC
Q psy9583 685 I--GLKVNENNFIIVNDNCE-TNIPNIYAIGDVVRG------------PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 685 ~--gl~~~~~G~i~Vd~~l~-Ts~~~VyA~GD~a~~------------~~~~~~A~~~g~~aa~~i~g 737 (866)
+ .+..+.+|+|.||++|| |++|||||+|||+.. |++++.|.+||+++|+||+.
T Consensus 263 ~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~ 330 (430)
T 3hyw_A 263 AGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN 330 (430)
T ss_dssp TCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence 3 34555678899999999 899999999999963 56889999999999999974
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=288.70 Aligned_cols=287 Identities=16% Similarity=0.196 Sum_probs=201.9
Q ss_pred ccceeeecCCccHHHHHHHHHH-C------CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhh
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ-L------GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFE 462 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~-~------g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~ 462 (866)
.+||+||||||||++||..|++ . |++|+|||+. +.+||.| +.||.|.+...
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~------~~~gg~~-~~gv~p~~~~~--------------- 60 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEML------PTPWGLV-RSGVAPDHPKI--------------- 60 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESS------SSCSTHH-HHTSCTTCTGG---------------
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecC------CCCCCcc-ccccCCCCCCH---------------
Confidence 4899999999999999999999 7 9999999997 5678877 34555532110
Q ss_pred cCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCC
Q psy9583 463 YGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGS 542 (866)
Q Consensus 463 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs 542 (866)
.. +...+..++++.+++++.+.. ++ +.+.+ +++ .+.||+||+|||+
T Consensus 61 ------------~~-----------~~~~~~~~~~~~~v~~~~~v~--v~------~~v~~--~~~-~~~~d~lViAtG~ 106 (456)
T 1lqt_A 61 ------------KS-----------ISKQFEKTAEDPRFRFFGNVV--VG------EHVQP--GEL-SERYDAVIYAVGA 106 (456)
T ss_dssp ------------GG-----------GHHHHHHHHTSTTEEEEESCC--BT------TTBCH--HHH-HHHSSEEEECCCC
T ss_pred ------------HH-----------HHHHHHHHHhcCCCEEEeeEE--EC------CEEEE--CCC-eEeCCEEEEeeCC
Confidence 00 011123345677888887632 21 22222 223 4789999999999
Q ss_pred C-CcCCCCCcCCCceEecchhhh-----------cccc-CCCeEEEECCcHHHHHHHHHHHhc-----------------
Q psy9583 543 K-ARSFPGVKFDENLILSNKGAL-----------EMIN-VPKKLCIIGAGVIGLEIGSIWRRL----------------- 592 (866)
Q Consensus 543 ~-p~~~p~~~~~~~~~~t~~~~~-----------~~~~-~~~~vvVIGgG~~glE~A~~l~~~----------------- 592 (866)
. |+.++.++.+...+++..++. ++.. .+++++|||+|++|+|+|..|.+.
T Consensus 107 ~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l 186 (456)
T 1lqt_A 107 QSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESL 186 (456)
T ss_dssp CEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHH
Confidence 7 565444443334566665542 1211 478999999999999999999974
Q ss_pred ---C-CcEEEEecCCcCCCcccH-------------------HH------------------HHHHHHHHHH------cC
Q psy9583 593 ---G-SEVTILEMSSNFLNTVDE-------------------EI------------------AKKAFHLLNK------QG 625 (866)
Q Consensus 593 ---g-~~Vtli~~~~~~l~~~d~-------------------~~------------------~~~l~~~l~~------~G 625 (866)
| .+|+++.|++.+...|++ ++ .+.+.+.+++ +|
T Consensus 187 ~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g 266 (456)
T 1lqt_A 187 RPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRR 266 (456)
T ss_dssp TTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEE
T ss_pred HHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCce
Confidence 5 489999998876543321 11 2344455555 79
Q ss_pred CEEEeCceEEEEEEcCCeEEEEEee----CCC------CccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcE
Q psy9583 626 LNIILNTKIHDIKINKENVLINYSN----KST------NVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFI 695 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~~v~~~~----~~g------~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i 695 (866)
|++++++.+.++..++....+.+.. .++ ...++..++++|.|++|+|++|+. + .+++++++|+|
T Consensus 267 v~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l-----~gl~~d~~g~i 340 (456)
T 1lqt_A 267 MVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T-----PGLPFDDQSGT 340 (456)
T ss_dssp EEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C-----TTSCCBTTTTB
T ss_pred EEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC-C-----CCCcccCCCCe
Confidence 9999999999998653211133321 011 001223579999999999999998 2 36778888899
Q ss_pred EeCCCCC-CCCCCEEEecccCCCCC-cHHHHHHHHHHHHHHHhCC
Q psy9583 696 IVNDNCE-TNIPNIYAIGDVVRGPM-LAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 696 ~Vd~~l~-Ts~~~VyA~GD~a~~~~-~~~~A~~~g~~aa~~i~g~ 738 (866)
.+|+++| |++|+|||+|||+.+|. .+..|+.+|+.+|.+|++.
T Consensus 341 ~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~ 385 (456)
T 1lqt_A 341 IPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKN 385 (456)
T ss_dssp CCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHH
T ss_pred eECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999 89999999999997665 5778999999999999753
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=285.50 Aligned_cols=287 Identities=11% Similarity=0.184 Sum_probs=201.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
.+||+|||||+||++||..|++.| ++|+|||+. +.+||.+ +.+|.|.+...
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~------~~~gg~~-~~g~~p~~~~~-------------------- 58 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ------LVPFGLV-RFGVAPDHPEV-------------------- 58 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS------SSSCTHH-HHTSCTTCGGG--------------------
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCC------CcCCcee-ecccCCCCccH--------------------
Confidence 489999999999999999999998 999999997 5566644 34454432110
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCC-cC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA-RS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p-~~ 546 (866)
..+. ..+..++++.+++++.+..+ . ..+.+ ++ ..+.||+||+|||+.| +.
T Consensus 59 -------~~~~-----------~~~~~~~~~~gv~~~~~~~v--~------~~V~~--~~-~~~~~d~lVlAtGs~~~~~ 109 (460)
T 1cjc_A 59 -------KNVI-----------NTFTQTARSDRCAFYGNVEV--G------RDVTV--QE-LQDAYHAVVLSYGAEDHQA 109 (460)
T ss_dssp -------GGHH-----------HHHHHHHTSTTEEEEBSCCB--T------TTBCH--HH-HHHHSSEEEECCCCCEECC
T ss_pred -------HHHH-----------HHHHHHHHhCCcEEEeeeEE--e------eEEEe--cc-ceEEcCEEEEecCcCCCCC
Confidence 0011 11234566778888776433 1 11222 12 2468999999999996 55
Q ss_pred CCCCcCCCceEecchhhhcc----------c-c-CCCeEEEECCcHHHHHHHHHHH--------------------hcCC
Q psy9583 547 FPGVKFDENLILSNKGALEM----------I-N-VPKKLCIIGAGVIGLEIGSIWR--------------------RLGS 594 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~----------~-~-~~~~vvVIGgG~~glE~A~~l~--------------------~~g~ 594 (866)
++.++.+...+++..++..+ . . .+++++|||+|++|+|+|..|. +.|.
T Consensus 110 ~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~ 189 (460)
T 1cjc_A 110 LDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRV 189 (460)
T ss_dssp CCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCC
T ss_pred CCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCC
Confidence 55554444557766655321 1 1 3789999999999999999999 5677
Q ss_pred -cEEEEecCCcCC--------------Ccc-------------------cHH---HHHHHHHHHHH--------------
Q psy9583 595 -EVTILEMSSNFL--------------NTV-------------------DEE---IAKKAFHLLNK-------------- 623 (866)
Q Consensus 595 -~Vtli~~~~~~l--------------~~~-------------------d~~---~~~~l~~~l~~-------------- 623 (866)
+|+++.|++.+. +.. +.. +.+.+.+.+++
T Consensus 190 ~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 269 (460)
T 1cjc_A 190 KTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASAS 269 (460)
T ss_dssp CEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCS
T ss_pred cEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCC
Confidence 799999988652 211 010 23444455555
Q ss_pred cCCEEEeCceEEEEEEcC-C-eE-EEEEeeC---C--C--C--ccceeEEEeccEEEEeeccccCCCCCCccccCe-eec
Q psy9583 624 QGLNIILNTKIHDIKINK-E-NV-LINYSNK---S--T--N--VKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL-KVN 690 (866)
Q Consensus 624 ~GV~i~~~~~v~~i~~~~-~-~~-~v~~~~~---~--g--~--~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl-~~~ 690 (866)
+||++++++.+.++..++ + .+ .+.+... . + . ..++..++++|.|++|+|++|+. + .|+ +++
T Consensus 270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l-----~gl~~~d 343 (460)
T 1cjc_A 270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I-----DPSVPFD 343 (460)
T ss_dssp EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C-----CTTSCCB
T ss_pred ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C-----CCCcccc
Confidence 899999999999998763 3 22 2333210 0 0 0 01223589999999999999997 2 467 788
Q ss_pred CCCcEEeCCCCCCC-CCCEEEecccCCCCC-cHHHHHHHHHHHHHHHhCC
Q psy9583 691 ENNFIIVNDNCETN-IPNIYAIGDVVRGPM-LAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 691 ~~G~i~Vd~~l~Ts-~~~VyA~GD~a~~~~-~~~~A~~~g~~aa~~i~g~ 738 (866)
++|+|.||+++||+ +|+|||+|||+.+|. .+..|+.+|+.+|.+|++.
T Consensus 344 ~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~~ 393 (460)
T 1cjc_A 344 PKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQD 393 (460)
T ss_dssp TTTTBCCEETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeeECCCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 88889999999999 799999999997665 5789999999999999753
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.6e-28 Score=271.66 Aligned_cols=284 Identities=18% Similarity=0.219 Sum_probs=204.9
Q ss_pred cceeeecCCccHHHHHHHHHH---CCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQ---LGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~---~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+||+|||||+||+++|..|++ .|++|+|||+++ .++... +.+. ........
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~------~~~~~~----~~~~----------------~~~~~~~~ 55 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR------FSYFRP----ALPH----------------VAIGVRDV 55 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS------EEEECC----SSCC----------------CCSSCCCC
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC------Cceecc----chhh----------------cccCCcCH
Confidence 579999999999999999999 899999999973 221100 0110 00000000
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCCc
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKAR 545 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~ 545 (866)
.. +...+...+++.+++++.+....++. ..+.+.+....+ .++.||+||+|||+.|.
T Consensus 56 ~~------------------~~~~~~~~~~~~gv~~~~~~v~~i~~---~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~ 114 (409)
T 3h8l_A 56 DE------------------LKVDLSEALPEKGIQFQEGTVEKIDA---KSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA 114 (409)
T ss_dssp CC------------------EEEEHHHHTGGGTCEEEECEEEEEET---TTTEEEEECTTSCEEEEECSEEEECCCCEEC
T ss_pred HH------------------HHHHHHHHHhhCCeEEEEeeEEEEeC---CCCEEEEccCCcccceeeCCEEEECCCCCcC
Confidence 00 11123445667799999986666654 345666654332 45999999999999887
Q ss_pred CCCCCcCC--CceEecchhhhcccc----CCCeEEEECCcH-------------------------HHHHHH----HHHH
Q psy9583 546 SFPGVKFD--ENLILSNKGALEMIN----VPKKLCIIGAGV-------------------------IGLEIG----SIWR 590 (866)
Q Consensus 546 ~~p~~~~~--~~~~~t~~~~~~~~~----~~~~vvVIGgG~-------------------------~glE~A----~~l~ 590 (866)
.++.++.. ...+.+.++...+.. ..++++|||+|+ .++|+| ..+.
T Consensus 115 ~~~ipG~~~~~~~~~~~~~~~~~~~~l~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~ 194 (409)
T 3h8l_A 115 TELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFK 194 (409)
T ss_dssp GGGSBTHHHHCEESSSTTHHHHHHHHHHHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHH
T ss_pred ccCCCChhhcCcCcCCHHHHHHHHHHHHHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHH
Confidence 54333222 223334444433322 336677999992 466776 4566
Q ss_pred hcCC----cEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccE
Q psy9583 591 RLGS----EVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 591 ~~g~----~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~ 666 (866)
+.|. +|+++++.+ +++.+++++.+.+.+.|++.||++++++.|++++.+ + +.+. +|+ ++++|.
T Consensus 195 ~~g~~~~~~v~~~~~~~-~l~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~--~--v~~~--~g~------~~~~D~ 261 (409)
T 3h8l_A 195 KKGMLDKVHVTVFSPGE-YLSDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREH--E--IVDE--KGN------TIPADI 261 (409)
T ss_dssp TTTCTTTEEEEEECSSS-SSTTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSS--E--EEET--TSC------EEECSE
T ss_pred HcCCCCCeEEEEEeCCc-cccccCHHHHHHHHHHHHHCCCEEEcCCceEEECCC--e--EEEC--CCC------EEeeeE
Confidence 7774 899999988 788899999999999999999999999999999753 2 4443 665 899999
Q ss_pred EEEeeccccCCCCCCcccc--CeeecCCCcEEeCCCCCC-CCCCEEEecccCC--CCCcHHHHHHHHHHHHHHHhCC
Q psy9583 667 LLIAIGRIPNTNNLNIDKI--GLKVNENNFIIVNDNCET-NIPNIYAIGDVVR--GPMLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 667 vi~a~G~~p~~~~l~l~~~--gl~~~~~G~i~Vd~~l~T-s~~~VyA~GD~a~--~~~~~~~A~~~g~~aa~~i~g~ 738 (866)
+++++|++|+. + ++++ ++ .+++|+|.||+++|| ++|||||+|||++ .+++++.|..||++||+||.+.
T Consensus 262 vi~a~G~~~~~-~--l~~~~~~l-~~~~G~i~vd~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~ 334 (409)
T 3h8l_A 262 TILLPPYTGNP-A--LKNSTPDL-VDDGGFIPTDLNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANR 334 (409)
T ss_dssp EEEECCEECCH-H--HHTSCGGG-SCTTSCBCBBTTSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCccH-H--HHhccccC-cCCCCCEEeCcccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999984 3 4555 44 356899999999999 8999999999996 4789999999999999999753
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=298.77 Aligned_cols=284 Identities=16% Similarity=0.168 Sum_probs=203.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
.++||+||||||||++||..|++.|++|+|||++ +.+||+|.+ | | +..+. +..
T Consensus 127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~------~~~GG~~~~--~-~-k~~i~---------------~~~-- 179 (965)
T 2gag_A 127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLDER------AEAGGTLLD--T-A-GEQID---------------GMD-- 179 (965)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSSGGGGG--S-S-CCEET---------------TEE--
T ss_pred cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC------CCCCceecc--C-C-ccccC---------------CCC--
Confidence 3589999999999999999999999999999997 678999862 2 2 10000 000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHh-CCcEEEEeEEEE-eccccCcccEE---------EEEc------CCceEE
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFFHGHAIF-TGKIQNNFHEI---------QIIN------KTKETI 531 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~v~~g~~v~-~~~~~~~~~~v---------~v~~------~~g~~i 531 (866)
..+| . ..+...+.+ .+++++.++.+. ++. ..... .+.. .++..+
T Consensus 180 --~~~~---~-----------~~~~~~l~~~~~v~~~~~~~V~~i~~---~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i 240 (965)
T 2gag_A 180 --SSAW---I-----------EQVTSELAEAEETTHLQRTTVFGSYD---ANYLIAAQRRTVHLDGPSGPGVSRERIWHI 240 (965)
T ss_dssp --HHHH---H-----------HHHHHHHHHSTTEEEESSEEEEEEET---TTEEEEEEECSTTCSSCCCTTCCSEEEEEE
T ss_pred --HHHH---H-----------HHHHHHHhhcCCcEEEeCCEEEeeec---CCceeeeEeecccccccccccCCCCceEEE
Confidence 0001 0 011222334 489988877665 322 11111 1111 112479
Q ss_pred EecEEEEecCCCCcCCCCCcCCCceEecchhhhcc----c-cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC
Q psy9583 532 TAKYIIIATGSKARSFPGVKFDENLILSNKGALEM----I-NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606 (866)
Q Consensus 532 ~~d~lViATGs~p~~~p~~~~~~~~~~t~~~~~~~----~-~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l 606 (866)
.||+||||||+.|+.++.++.+...+++...+..+ . ..+++++|||+|++|+|+|..|.+.|.+|+++++.+.++
T Consensus 241 ~~d~lVlATGs~p~~~~ipG~~~~gv~~~~~~~~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~ 320 (965)
T 2gag_A 241 RAKQVVLATGAHERPIVFENNDRPGIMLAGAVRSYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSIS 320 (965)
T ss_dssp EEEEEEECCCEEECCCCCBTCCSTTEEEHHHHHHHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCC
T ss_pred ECCEEEECCCCccCCCCCCCCCCCCEEEhHHHHHHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccc
Confidence 99999999999988776655555567766443221 1 235899999999999999999999999999999998875
Q ss_pred CcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeE-EEEEee--CCCCccceeEEEeccEEEEeeccccCCCCCCc
Q psy9583 607 NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKIN-KENV-LINYSN--KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNI 682 (866)
Q Consensus 607 ~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~-~v~~~~--~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l 682 (866)
+. .+.|++.||++++++.++++..+ ++.+ .+.+.+ ..+. .++..++++|.|++++|++|+++++
T Consensus 321 ~~---------~~~l~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~-~G~~~~i~~D~Vv~a~G~~P~~~l~-- 388 (965)
T 2gag_A 321 AA---------AAQAVADGVQVISGSVVVDTEADENGELSAIVVAELDEARE-LGGTQRFEADVLAVAGGFNPVVHLH-- 388 (965)
T ss_dssp HH---------HHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCC-EEEEEEEECSEEEEECCEEECCHHH--
T ss_pred hh---------HHHHHhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCC-CCceEEEEcCEEEECCCcCcChHHH--
Confidence 31 56788999999999999999874 3332 455543 1100 0113589999999999999999873
Q ss_pred cccCeeecCCCcEEeCCCCC-----CCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 683 DKIGLKVNENNFIIVNDNCE-----TNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 683 ~~~gl~~~~~G~i~Vd~~l~-----Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
+. .+|+|.+|++++ |++|+|||+|||++.+.+. .|+.||++||.+|++
T Consensus 389 ~~------~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~~~l~-~A~~~G~~aA~~i~~ 441 (965)
T 2gag_A 389 SQ------RQGKLDWDTTIHAFVPADAVANQHLAGAMTGRLDTA-SALSTGAATGAAAAT 441 (965)
T ss_dssp HH------TTCCEEEETTTTEEEECSCCTTEEECGGGGTCCSHH-HHHHHHHHHHHHHHH
T ss_pred Hh------CCCcEEEcCcccccccCCCCCCEEEEEecCCchhHH-HHHHHHHHHHHHHHH
Confidence 32 246799999887 8999999999999877665 899999999999975
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-29 Score=278.37 Aligned_cols=284 Identities=14% Similarity=0.121 Sum_probs=197.7
Q ss_pred cceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++|||||||+||++||.+|++.+ .+|+|||+++ .... |...+.+. ....+..
T Consensus 3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~------~~~~------~p~~~~v~--------------~g~~~~~ 56 (401)
T 3vrd_B 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE------TYYT------CYMSNEVI--------------GGDRELA 56 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS------SEEC------STTHHHHH--------------HTSSCGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC------CCCC------ccCHHHHh--------------cCCCCHH
Confidence 57999999999999999999875 6899999862 1111 10000000 0000111
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p 548 (866)
....++. .+.+.|++++.+++..++. +.+.+. +.++.++.||+||+|||+.+..++
T Consensus 57 ~~~~~~~-------------------~~~~~gv~~i~~~v~~id~---~~~~v~--~~~g~~i~yd~LviAtG~~~~~~~ 112 (401)
T 3vrd_B 57 SLRVGYD-------------------GLRAHGIQVVHDSALGIDP---DKKLVK--TAGGAEFAYDRCVVAPGIDLLYDK 112 (401)
T ss_dssp GGEECSH-------------------HHHHTTCEEECSCEEEEET---TTTEEE--ETTSCEEECSEEEECCCEEECGGG
T ss_pred HHhhCHH-------------------HHHHCCCEEEEeEEEEEEc---cCcEEE--ecccceeecceeeeccCCccccCC
Confidence 1111111 2345799999998887766 334444 467789999999999999877543
Q ss_pred CCcCCC------ce-Eecchhhhccc------cCCCeEEEECCc----------HHHHHHHHHHHhcC--CcEEEEecCC
Q psy9583 549 GVKFDE------NL-ILSNKGALEMI------NVPKKLCIIGAG----------VIGLEIGSIWRRLG--SEVTILEMSS 603 (866)
Q Consensus 549 ~~~~~~------~~-~~t~~~~~~~~------~~~~~vvVIGgG----------~~glE~A~~l~~~g--~~Vtli~~~~ 603 (866)
.++... .+ ..+.++...+. .....+++.+++ ..+++++..+.+.+ .+|+++++.+
T Consensus 113 i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~ 192 (401)
T 3vrd_B 113 IEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQ 192 (401)
T ss_dssp SBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSS
T ss_pred ccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccc
Confidence 333221 11 11233332221 123334443321 24567777777665 6799999988
Q ss_pred cCC--CcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCC
Q psy9583 604 NFL--NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681 (866)
Q Consensus 604 ~~l--~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~ 681 (866)
.+. +.+++.+.+.+.+.+++.||++++++.+..++.+.+...+.+. +|+ ++++|.+++++|.+|+. +
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~--~g~------~i~~D~vi~~~g~~~~~-~-- 261 (401)
T 3vrd_B 193 TFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETS--FGE------TFKAAVINLIPPQRAGK-I-- 261 (401)
T ss_dssp SCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEET--TSC------EEECSEEEECCCEEECH-H--
T ss_pred cccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcC--CCc------EEEeeEEEEecCcCCch-h--
Confidence 874 3578888888888899999999999999998877666555554 676 89999999999999974 3
Q ss_pred ccccCeeecCCCcEEeCCC-CC-CCCCCEEEecccCCC---CCcHHHHHHHHHHHHHHHh
Q psy9583 682 IDKIGLKVNENNFIIVNDN-CE-TNIPNIYAIGDVVRG---PMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 682 l~~~gl~~~~~G~i~Vd~~-l~-Ts~~~VyA~GD~a~~---~~~~~~A~~~g~~aa~~i~ 736 (866)
++++++. +++|+|.||++ || |++|||||+|||+.. |++++.|.+||+++|+||+
T Consensus 262 ~~~~gl~-~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~ 320 (401)
T 3vrd_B 262 AQSASLT-NDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVV 320 (401)
T ss_dssp HHHTTCC-CTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHH
T ss_pred Hhhcccc-ccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHH
Confidence 5777884 67899999987 65 899999999999863 5789999999999999997
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=273.32 Aligned_cols=321 Identities=12% Similarity=0.152 Sum_probs=201.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCC-----CeEEEEeccCCCcccccCCCccceeccc-cchhHHHhhHHHHHHhhhhhhc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG-----FKTACIDEWKDNEENFALGGTCTNVGCI-PSKALLQTSHSFENVKNSFFEY 463 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g-----~~V~liek~~~~~~~~~~GG~~~~~g~~-P~~~~~~~~~~~~~~~~~~~~~ 463 (866)
.+||+|||||+||+++|..|++.| .+|+|||+. +.+|... ++. |...+. .. . ...+...
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~------~~~g~~~---~~~~~~~~~~-~~-~----~~~l~~~ 94 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQ------GDYRWHG---NTLVSQSELQ-IS-F----LKDLVSL 94 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESC------SSCCSSG---GGCCSSCBCS-SC-T----TSSSSTT
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecC------CCCCCcC---CCCCCCCcCC-cc-h----hhccccc
Confidence 589999999999999999999999 999999998 3333110 110 000000 00 0 0000000
Q ss_pred CccccccccCHHHHHHHHHH------------HHHhhhhhHHHHHHhCCcEEEEeEEEE-ecccc--CcccEEEEEcCCc
Q psy9583 464 GINTQNVTLNLQKMLERKNN------------IIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQ--NNFHEIQIINKTK 528 (866)
Q Consensus 464 gi~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~--~~~~~v~v~~~~g 528 (866)
..+ ...+.+...+..... ....+...+....++.++++.+++.+. ++..+ ...+.+.|.+.++
T Consensus 95 ~~p--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g 172 (463)
T 3s5w_A 95 RNP--TSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNA 172 (463)
T ss_dssp TCT--TCTTSHHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEET
T ss_pred cCC--CCCCChhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecC
Confidence 000 000001000000000 001122234455666788898887665 43311 1112245554333
Q ss_pred e----EEEecEEEEecCCCCcCCCCC-cCCCc-eEecchhhhc-ccc------CCCeEEEECCcHHHHHHHHHHHhc--C
Q psy9583 529 E----TITAKYIIIATGSKARSFPGV-KFDEN-LILSNKGALE-MIN------VPKKLCIIGAGVIGLEIGSIWRRL--G 593 (866)
Q Consensus 529 ~----~i~~d~lViATGs~p~~~p~~-~~~~~-~~~t~~~~~~-~~~------~~~~vvVIGgG~~glE~A~~l~~~--g 593 (866)
. ++.||+||+|||+.|..|++. ...+. .++++.+... ... .+++|+|||+|.+|+|+|..|.+. +
T Consensus 173 ~g~~~~~~~d~lVlAtG~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~ 252 (463)
T 3s5w_A 173 DGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPS 252 (463)
T ss_dssp TSCEEEEEESEEEECCCCEECCCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTT
T ss_pred CCceEEEEeCEEEECCCCCCCCcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCC
Confidence 2 899999999999988876533 23332 3444433322 222 478999999999999999999999 9
Q ss_pred CcEEEEecCCcCCCc--------------------ccHHHHHHHHHHHHH--------------------------cCCE
Q psy9583 594 SEVTILEMSSNFLNT--------------------VDEEIAKKAFHLLNK--------------------------QGLN 627 (866)
Q Consensus 594 ~~Vtli~~~~~~l~~--------------------~d~~~~~~l~~~l~~--------------------------~GV~ 627 (866)
.+|++++|.+.+++. ++++....+.+.+.. .||+
T Consensus 253 ~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 332 (463)
T 3s5w_A 253 VQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHA 332 (463)
T ss_dssp EEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSE
T ss_pred CeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeE
Confidence 999999999987552 222223333333222 5999
Q ss_pred EEeCceEEEEEEcCCeEEEEEeeC-CCCccceeEEEeccEEEEeeccccC--CCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 628 IILNTKIHDIKINKENVLINYSNK-STNVKTEIITSIFDKLLIAIGRIPN--TNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 628 i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~--~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
+++++.|++++.+++++.+.+.+. +|+ ..++++|.||+|+|++|+ .++ ++.+...+ |++.||+++++.
T Consensus 333 i~~~~~v~~v~~~~~~~~v~~~~~~~g~----~~~~~~D~Vv~AtG~~p~~~~~~--l~~l~~~~---g~i~v~~~~~~~ 403 (463)
T 3s5w_A 333 FRCMTTVERATATAQGIELALRDAGSGE----LSVETYDAVILATGYERQLHRQL--LEPLAEYL---GDHEIGRDYRLQ 403 (463)
T ss_dssp EETTEEEEEEEEETTEEEEEEEETTTCC----EEEEEESEEEECCCEECCC-CTT--TGGGGGGB---C--CCCTTSBCC
T ss_pred EEeCCEEEEEEecCCEEEEEEEEcCCCC----eEEEECCEEEEeeCCCCCCccch--hHHHHHHh---CCcccCcccccc
Confidence 999999999998888888877643 343 346999999999999999 555 34443332 779999999974
Q ss_pred -----CCCEEEecccCC-----CCCcHHHHHHHHHHHHHHHh
Q psy9583 705 -----IPNIYAIGDVVR-----GPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 705 -----~~~VyA~GD~a~-----~~~~~~~A~~~g~~aa~~i~ 736 (866)
.|+|||+|||.. .+.+...|++++++++..+-
T Consensus 404 ~~~~~~~~Ifa~G~~~~~~g~~~~~l~~~a~r~~~i~~~~~~ 445 (463)
T 3s5w_A 404 TDERCKVAIYAQGFSQASHGLSDTLLSVLPVRAEEISGSLYQ 445 (463)
T ss_dssp BCTTBCSEEEESSCCHHHHCTTTTSSTTHHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEcCCCcccCCcCccchhHHHHHHHHHHHHHHh
Confidence 567999999984 45678899999998877664
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-28 Score=293.51 Aligned_cols=289 Identities=21% Similarity=0.227 Sum_probs=202.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
..+||+|||||+||++||..|++.|++|+|||+. +.+||.|.+..+.|.+.
T Consensus 388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~------~~~GG~~~~~~~~pg~~----------------------- 438 (729)
T 1o94_A 388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTA------EKIGGHLNQVAALPGLG----------------------- 438 (729)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS------SSTTTTHHHHTTSTTCG-----------------------
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCC------CCcCCeeeecccCCChH-----------------------
Confidence 3589999999999999999999999999999997 67899886655555321
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHH--HhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCC--
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLF--KKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA-- 544 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p-- 544 (866)
+|..+..+.... +.... ...++++..++. +..+++..+.||+||||||+.|
T Consensus 439 ----~~~~~~~~~~~~-------i~~~~~~~~~~v~i~~~~~--------------v~~~~~~~~~~d~vviAtG~~~~~ 493 (729)
T 1o94_A 439 ----EWSYHRDYRETQ-------ITKLLKKNKESQLALGQKP--------------MTADDVLQYGADKVIIATGARWNT 493 (729)
T ss_dssp ----GGHHHHHHHHHH-------HHHHHHHSTTCEEECSCCC--------------CCHHHHHTSCCSEEEECCCEEECS
T ss_pred ----HHHHHHHHHHHH-------HHHhhcccCCceEEEeCeE--------------EehhhccccCCCEEEEcCCCCccc
Confidence 111111111111 11111 123455433211 1112334578999999999984
Q ss_pred ------cCCCCCcCC--CceEecchhhhccc-cCCCeEEEEC--CcHHHHHHHHHHHhcCCcEEEEecCCcCCCc--ccH
Q psy9583 545 ------RSFPGVKFD--ENLILSNKGALEMI-NVPKKLCIIG--AGVIGLEIGSIWRRLGSEVTILEMSSNFLNT--VDE 611 (866)
Q Consensus 545 ------~~~p~~~~~--~~~~~t~~~~~~~~-~~~~~vvVIG--gG~~glE~A~~l~~~g~~Vtli~~~~~~l~~--~d~ 611 (866)
..++.++.+ ...+++..+++... ..+++|+||| ||++|+|+|..|+++|.+|+++++.+ +++. ++.
T Consensus 494 ~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~ 572 (729)
T 1o94_A 494 DGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTL 572 (729)
T ss_dssp SCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTT
T ss_pred ccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccccc
Confidence 344444433 44677777765543 3468999999 99999999999999999999999998 6542 333
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCc-------------cceeEEEeccEEEEeeccccCCC
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNV-------------KTEIITSIFDKLLIAIGRIPNTN 678 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~-------------~~~~~~~~~D~vi~a~G~~p~~~ 678 (866)
. ...+.+.|++.||++++++.++++.. +++.+.....++.. .+...++++|.||+|+|++|+++
T Consensus 573 ~-~~~~~~~l~~~GV~i~~~~~v~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~ 649 (729)
T 1o94_A 573 E-YPNMMRRLHELHVEELGDHFCSRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECT 649 (729)
T ss_dssp C-HHHHHHHHHHTTCEEECSEEEEEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCH
T ss_pred c-HHHHHHHHHhCCCEEEcCcEEEEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChH
Confidence 3 56778889999999999999999974 34444332112210 01223599999999999999988
Q ss_pred CCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccE
Q psy9583 679 NLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPF 749 (866)
Q Consensus 679 ~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~ 749 (866)
+ ++.++ ..+|++++|++|+|||+|||++ +..+..|+.||+.||.+|.+.. .+..+|+
T Consensus 650 l--~~~l~--------~~vd~~~~t~~~~VyAiGD~~~-~~~~~~A~~~G~~aA~~i~~~l---~~~~~p~ 706 (729)
T 1o94_A 650 L--WNELK--------ARESEWAENDIKGIYLIGDAEA-PRLIADATFTGHRVAREIEEAN---PQIAIPY 706 (729)
T ss_dssp H--HHHHH--------HTGGGTGGGTCCEEEECGGGTS-CCCHHHHHHHHHHHHHTTTSSC---TTSCCCC
T ss_pred H--HHHHh--------hhcccccccCCCCeEEEeCccc-hhhHHHHHHHHHHHHHHhhhhc---ccCCCCe
Confidence 6 33321 1368899999999999999996 6678899999999999998653 2445565
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=271.95 Aligned_cols=304 Identities=13% Similarity=0.106 Sum_probs=196.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCC--eEEEEeccCCCcccccCCCccceeccc------cchhHH-------H-----
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGF--KTACIDEWKDNEENFALGGTCTNVGCI------PSKALL-------Q----- 448 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~--~V~liek~~~~~~~~~~GG~~~~~g~~------P~~~~~-------~----- 448 (866)
..+||+|||||++|+++|..|++.|. +|+|||+. +.+||.|.+.++. |..... .
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~------~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~ 78 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR------GSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALP 78 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS------SSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecC------CCCCCeecCCCCCCcccccccccccccccccccccccC
Confidence 35899999999999999999999999 99999997 6789999877652 211000 0
Q ss_pred --hhHHHHHHhh----hhhhc-Ccccc---ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCc
Q psy9583 449 --TSHSFENVKN----SFFEY-GINTQ---NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNN 517 (866)
Q Consensus 449 --~~~~~~~~~~----~~~~~-gi~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~ 517 (866)
....+..+.. .+..+ +++.. ........+..+ +..+.++.+..+.+++.+. ++. +..
T Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------l~~~~~~~~~~i~~~t~V~~v~~-~~~ 146 (447)
T 2gv8_A 79 VYPSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEY-----------QRIYAQPLLPFIKLATDVLDIEK-KDG 146 (447)
T ss_dssp BCCCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHH-----------HHHHHGGGGGGEECSEEEEEEEE-ETT
T ss_pred CccCchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHHhhCeEEeCCEEEEEEe-CCC
Confidence 0000000000 00000 11100 011112222222 3334444466676666655 322 112
Q ss_pred ccEEEEEc-CCce---EEEecEEEEecCC--CCcCCCCCcCCC------ceEecchhhhcccc-CCCeEEEECCcHHHHH
Q psy9583 518 FHEIQIIN-KTKE---TITAKYIIIATGS--KARSFPGVKFDE------NLILSNKGALEMIN-VPKKLCIIGAGVIGLE 584 (866)
Q Consensus 518 ~~~v~v~~-~~g~---~i~~d~lViATGs--~p~~~p~~~~~~------~~~~t~~~~~~~~~-~~~~vvVIGgG~~glE 584 (866)
.+.+++.. .+|. ++.||+||+|||+ .|+.|+.++... ..++++.++.+... .+++|+|||+|++|+|
T Consensus 147 ~~~V~~~~~~~G~~~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e 226 (447)
T 2gv8_A 147 SWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSAND 226 (447)
T ss_dssp EEEEEEEESSTTCCEEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHH
T ss_pred eEEEEEeecCCCCeeEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHH
Confidence 23344432 1244 7999999999998 666654443221 12555555444332 5799999999999999
Q ss_pred HHHHHHhcCCc-EEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEe
Q psy9583 585 IGSIWRRLGSE-VTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663 (866)
Q Consensus 585 ~A~~l~~~g~~-Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~ 663 (866)
+|..|++.|.+ |++++|.+.+ +++.||.+ +..|+++..++.. +.+. +|. ..++
T Consensus 227 ~A~~l~~~~~~~V~l~~r~~~~---------------l~~~~i~~--~~~v~~~~~~~~~--v~~~--dG~-----~~~~ 280 (447)
T 2gv8_A 227 LVRHLTPVAKHPIYQSLLGGGD---------------IQNESLQQ--VPEITKFDPTTRE--IYLK--GGK-----VLSN 280 (447)
T ss_dssp HHHHHTTTSCSSEEEECTTCCS---------------CBCSSEEE--ECCEEEEETTTTE--EEET--TTE-----EECC
T ss_pred HHHHHHHHhCCcEEEEeCCCCc---------------CCCCCeEE--ecCeEEEecCCCE--EEEC--CCC-----Eecc
Confidence 99999999999 9999998876 33456664 5788888654433 4443 564 2378
Q ss_pred ccEEEEeeccccCCCC-----CCccccCeeecCCCcEEeCCCCC---CCCCCEEEecccCCCCCcHHHHHHHHHHHHHHH
Q psy9583 664 FDKLLIAIGRIPNTNN-----LNIDKIGLKVNENNFIIVNDNCE---TNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735 (866)
Q Consensus 664 ~D~vi~a~G~~p~~~~-----l~l~~~gl~~~~~G~i~Vd~~l~---Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i 735 (866)
+|.||+|+|++|++++ +.....++.. ++.+.++.+.+ +++|+||++||+.... +++.|..||+.+|+++
T Consensus 281 ~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~--~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-~~~~a~~qa~~~a~~~ 357 (447)
T 2gv8_A 281 IDRVIYCTGYLYSVPFPSLAKLKSPETKLID--DGSHVHNVYQHIFYIPDPTLAFVGLALHVV-PFPTSQAQAAFLARVW 357 (447)
T ss_dssp CSEEEECCCBCCCCCCHHHHSCCSTTTCCCS--SSSSCCSEETTTEETTCTTEEESSCCBSSC-HHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcCCCCCcccccccccCceec--CCCcccccccccccCCCCcEEEEecccccc-CchHHHHHHHHHHHHH
Confidence 9999999999999998 5311123333 45566676665 7999999999998654 7899999999999999
Q ss_pred hCCC
Q psy9583 736 SGQK 739 (866)
Q Consensus 736 ~g~~ 739 (866)
.|..
T Consensus 358 ~g~~ 361 (447)
T 2gv8_A 358 SGRL 361 (447)
T ss_dssp TTSS
T ss_pred cCCC
Confidence 9853
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-28 Score=289.74 Aligned_cols=272 Identities=16% Similarity=0.184 Sum_probs=204.0
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
...+||+|||||+||++||..|++.|++|+|||+. +.+||.|.+..+.|.+.
T Consensus 389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~------~~~GG~~~~~~~~p~~~---------------------- 440 (690)
T 3k30_A 389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAG------RDLGGRVTQESALPGLS---------------------- 440 (690)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSS------SSSCTHHHHHHTSTTCG----------------------
T ss_pred cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecC------CCCCCEeeeccCCCchh----------------------
Confidence 44689999999999999999999999999999997 67899875443333211
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc-
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR- 545 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~- 545 (866)
++..+..+ +...+.+. +++++.++.+.. .++..+.||+||+|||+.|+
T Consensus 441 -----~~~~~~~~-----------~~~~~~~~~gv~~~~~~~v~~--------------~~~~~~~~d~lvlAtG~~~~~ 490 (690)
T 3k30_A 441 -----AWGRVKEY-----------REAVLAELPNVEIYRESPMTG--------------DDIVEFGFEHVITATGATWRT 490 (690)
T ss_dssp -----GGGHHHHH-----------HHHHHHTCTTEEEESSCCCCH--------------HHHHHTTCCEEEECCCEEECS
T ss_pred -----HHHHHHHH-----------HHHHHHHcCCCEEEECCeecH--------------HHHhhcCCCEEEEcCCCcccc
Confidence 12222222 23345555 888776643221 12345789999999999843
Q ss_pred -------CCCCCcCCCceEecchhhhccc-cCCCeEEEEC--CcHHHHHHHHHHHhcCCcEEEEecCCcCCCcc-cHHHH
Q psy9583 546 -------SFPGVKFDENLILSNKGALEMI-NVPKKLCIIG--AGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV-DEEIA 614 (866)
Q Consensus 546 -------~~p~~~~~~~~~~t~~~~~~~~-~~~~~vvVIG--gG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~-d~~~~ 614 (866)
.++.++.+...+++..+..... ..+++++||| +|++|+|+|..|.+.|.+|+++++.+.+++.. ++...
T Consensus 491 ~~~~~~~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~ 570 (690)
T 3k30_A 491 DGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEV 570 (690)
T ss_dssp SCCSSSCSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCH
T ss_pred ccccccCCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhH
Confidence 4555555556778877766543 3467899999 99999999999999999999999999888754 35667
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCc
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNF 694 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~ 694 (866)
..+.+.|++.||+++++++|++++.+ ++.+.... ++. ..++++|.||+|+|++|+..++ +.++. .+.
T Consensus 571 ~~l~~~l~~~GV~i~~~~~V~~i~~~--~~~v~~~~-~~~----~~~i~aD~VV~A~G~~p~~~l~--~~l~~----~~~ 637 (690)
T 3k30_A 571 NRIQRRLIENGVARVTDHAVVAVGAG--GVTVRDTY-ASI----ERELECDAVVMVTARLPREELY--LDLVA----RRD 637 (690)
T ss_dssp HHHHHHHHHTTCEEEESEEEEEEETT--EEEEEETT-TCC----EEEEECSEEEEESCEEECCHHH--HHHHH----HHH
T ss_pred HHHHHHHHHCCCEEEcCcEEEEEECC--eEEEEEcc-CCe----EEEEECCEEEECCCCCCChHHH--HHHhh----hhc
Confidence 88899999999999999999999743 34443321 111 3479999999999999998863 33221 221
Q ss_pred EEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC
Q psy9583 695 IIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 695 i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~ 738 (866)
+|++|+|||+|||++ ++.+..|+.||+.||.||.+.
T Consensus 638 -------~t~~~~VyaiGD~~~-~~~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 638 -------AGEIASVRGIGDAWA-PGTIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp -------HTSCSEEEECGGGTS-CBCHHHHHHHHHHHHHHTTCC
T ss_pred -------ccCCCCEEEEeCCCc-hhhHHHHHHHHHHHHHHHHhh
Confidence 789999999999996 456667999999999999876
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=265.62 Aligned_cols=257 Identities=21% Similarity=0.246 Sum_probs=186.0
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
.++||+|||||+||++||.+|++. ++|+|||++ +.+||.+.+... ..++++.
T Consensus 107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~------~~~GG~~~~~~~--------------------~~~g~~~- 158 (493)
T 1y56_A 107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIEER------GWLGGDMWLKGI--------------------KQEGFNK- 158 (493)
T ss_dssp EEESCCEECCSHHHHHHHHHHTTT-CCEEEECTT------SSSSCSGGGTCS--------------------EETTTTE-
T ss_pred ccCCEEEECccHHHHHHHHHHHhc-CCEEEEeCC------CCCCCeeecccc--------------------ccCCCCC-
Confidence 458999999999999999999999 999999998 677887643110 0011110
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCc--eEEEecEEEEecCCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTK--ETITAKYIIIATGSKA 544 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g--~~i~~d~lViATGs~p 544 (866)
+..++..+ +...+ +.+++++.+..+. ++. ....+.+.. +++ ..+.||+||+|||+.|
T Consensus 159 ----~~~~~~~~-----------l~~~l-~~~v~~~~~~~v~~i~~---~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~ 219 (493)
T 1y56_A 159 ----DSRKVVEE-----------LVGKL-NENTKIYLETSALGVFD---KGEYFLVPVVRGDKLIEILAKRVVLATGAID 219 (493)
T ss_dssp ----EHHHHHHH-----------HHHTC-CTTEEEETTEEECCCEE---CSSSEEEEEEETTEEEEEEESCEEECCCEEE
T ss_pred ----CHHHHHHH-----------HHHHH-hcCCEEEcCCEEEEEEc---CCcEEEEEEecCCeEEEEECCEEEECCCCCc
Confidence 11111111 11112 5688888777665 222 223333322 233 3799999999999998
Q ss_pred cCCCCCcCCCceEecchhhhccc-----cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHH
Q psy9583 545 RSFPGVKFDENLILSNKGALEMI-----NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFH 619 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~~~~~~~~-----~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~ 619 (866)
+.++..+.+...+++..++..+. ..+++++|+|+|++|+| +
T Consensus 220 ~~~~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~vvViGgG~~gle----------------------------------~ 265 (493)
T 1y56_A 220 STMLFENNDMPGVFRRDFALEVMNVWEVAPGRKVAVTGSKADEVI----------------------------------Q 265 (493)
T ss_dssp CCCCCTTTTSTTEEEHHHHHHHHHTSCBCSCSEEEEESTTHHHHH----------------------------------H
T ss_pred cCCCCCCCCCCCEEEcHHHHHHHHhcccCCCCEEEEECCCHHHHH----------------------------------H
Confidence 87665554555577666554332 23589999999999998 4
Q ss_pred HHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCee--ecCCCcEE-
Q psy9583 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK--VNENNFII- 696 (866)
Q Consensus 620 ~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~--~~~~G~i~- 696 (866)
.+++.||++++++.|+++..++....+.+ .+|. ++++|.|++|+|++|+.++ ++.+|++ ++++|+|.
T Consensus 266 ~l~~~GV~v~~~~~v~~i~~~~~v~~v~~--~~g~------~i~aD~Vv~a~G~~p~~~l--~~~~g~~~~~~~~g~i~~ 335 (493)
T 1y56_A 266 ELERWGIDYVHIPNVKRVEGNEKVERVID--MNNH------EYKVDALIFADGRRPDINP--ITQAGGKLRFRRGYYSPV 335 (493)
T ss_dssp HHHHHTCEEEECSSEEEEECSSSCCEEEE--TTCC------EEECSEEEECCCEEECCHH--HHHTTCCEEEETTEEEEC
T ss_pred HHHhCCcEEEeCCeeEEEecCCceEEEEe--CCCe------EEEeCEEEECCCcCcCchH--HHhcCCCccccCCceeec
Confidence 56788999999999999986654333333 3565 8999999999999999987 4666654 45788887
Q ss_pred eCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCC
Q psy9583 697 VNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 697 Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~ 738 (866)
||++++ +.|+|||+|||++. .++..|+.||++||.+|++.
T Consensus 336 vd~~~~-s~~~vya~GD~~~~-~~~~~A~~~g~~aa~~i~~~ 375 (493)
T 1y56_A 336 LDEYHR-IKDGIYVAGSAVSI-KPHYANYLEGKLVGAYILKE 375 (493)
T ss_dssp CCTTSE-EETTEEECSTTTCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred cccccC-cCCCEEEEeccCCc-cCHHHHHHHHHHHHHHHHHH
Confidence 899999 99999999999964 57899999999999999864
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-26 Score=270.93 Aligned_cols=259 Identities=20% Similarity=0.271 Sum_probs=192.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
..+||+|||||+||++||..|++.|++|+|||++ +.+||.+.+.+++|.+.
T Consensus 372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~------~~~gg~~~~~~~~~~~~----------------------- 422 (671)
T 1ps9_A 372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAH------SEIGGQFNIAKQIPGKE----------------------- 422 (671)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS------SSSCTTHHHHTTSTTCT-----------------------
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCC------CCCCCeeeccccCCCHH-----------------------
Confidence 3589999999999999999999999999999997 67888775444433211
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEE-EecEEEEecCCCCcCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETI-TAKYIIIATGSKARSF 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i-~~d~lViATGs~p~~~ 547 (866)
++..+.. .+...+++.+++++.++.+.. ..+ .||+||||||+.|+.|
T Consensus 423 ----~~~~~~~-----------~~~~~~~~~gv~~~~~~~v~~-----------------~~~~~~d~lviAtG~~p~~~ 470 (671)
T 1ps9_A 423 ----EFYETLR-----------YYRRMIEVTGVTLKLNHTVTA-----------------DQLQAFDETILASGIVPRTP 470 (671)
T ss_dssp ----THHHHHH-----------HHHHHHHHHTCEEEESCCCCS-----------------SSSCCSSEEEECCCEEECCC
T ss_pred ----HHHHHHH-----------HHHHHHHHcCCEEEeCcEecH-----------------HHhhcCCEEEEccCCCcCCC
Confidence 1111111 123445667899887764321 113 7999999999999877
Q ss_pred CCCcCCCceEecchhhhccc-cCCCeEEEECCcHHHHHHHHHHHhcCC--------------------------------
Q psy9583 548 PGVKFDENLILSNKGALEMI-NVPKKLCIIGAGVIGLEIGSIWRRLGS-------------------------------- 594 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~~-~~~~~vvVIGgG~~glE~A~~l~~~g~-------------------------------- 594 (866)
+..+.+...+++..+..... ..+++|+|||||++|+|+|..|++.|.
T Consensus 471 ~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 550 (671)
T 1ps9_A 471 PIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQI 550 (671)
T ss_dssp CCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCC
T ss_pred CCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhccccccccccccccccccc
Confidence 66555555677776665443 357999999999999999999998874
Q ss_pred -----cEEEEecCCcCC-CcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEE
Q psy9583 595 -----EVTILEMSSNFL-NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLL 668 (866)
Q Consensus 595 -----~Vtli~~~~~~l-~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi 668 (866)
+|+++++.+..+ ..+++.....+.+.|++.||++++++.++++.. +++.+. . +|. ..++++|.||
T Consensus 551 ~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~v~~~-~--~G~----~~~i~~D~Vi 621 (671)
T 1ps9_A 551 PRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLHVV-I--NGE----TQVLAVDNVV 621 (671)
T ss_dssp CCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEEEE-E--TTE----EEEECCSEEE
T ss_pred CCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeC--CeEEEe-c--CCe----EEEEeCCEEE
Confidence 456677766555 356777778888999999999999999999973 344443 2 442 3479999999
Q ss_pred EeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHH
Q psy9583 669 IAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGP-MLAHKAEEEGIMVAEHI 735 (866)
Q Consensus 669 ~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~-~~~~~A~~~g~~aa~~i 735 (866)
+|+|++||++++ +.+ +.. .++||++|||+... ..+..|++||..+|.||
T Consensus 622 ~a~G~~p~~~l~--~~l----~~~------------g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 622 ICAGQEPNRALA--QPL----IDS------------GKTVHLIGGCDVAMELDARRAIAQGTRLALEI 671 (671)
T ss_dssp ECCCEEECCTTH--HHH----HTT------------TCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred ECCCccccHHHH--HHH----Hhc------------CCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence 999999999873 321 112 26899999998643 46999999999999986
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=256.96 Aligned_cols=307 Identities=18% Similarity=0.219 Sum_probs=200.0
Q ss_pred ccceeeecCCccHHHHHHHHH-HCCCeEEEEeccCCCcccccCCCcccee---cc---ccchhHHHhhHHHHHHhhhhhh
Q psy9583 390 NFDVIVIGAGPGGYVASIRLA-QLGFKTACIDEWKDNEENFALGGTCTNV---GC---IPSKALLQTSHSFENVKNSFFE 462 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~-~~g~~V~liek~~~~~~~~~~GG~~~~~---g~---~P~~~~~~~~~~~~~~~~~~~~ 462 (866)
++||+|||||+||+++|..|+ +.|++|+|||+. +.+||+|... || +|++.+...... .. ...
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~------~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~--~~---~~~ 76 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKA------DGPGGTWYWNRYPGALSDTESHLYRFSFDR--DL---LQE 76 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESS------SSSCTHHHHCCCTTCEEEEEGGGSSCCSCH--HH---HHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECC------CCCCCcccccCCCCceecCCcceeeecccc--cc---ccC
Confidence 489999999999999999999 899999999998 6899998543 43 344333222100 00 011
Q ss_pred cCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCc--EEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEec
Q psy9583 463 YGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKI--KFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIAT 540 (866)
Q Consensus 463 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViAT 540 (866)
+.+. ....+...+.. .+....++.++ ++..++.+..-..+.....+.|.+.+|+++.||+||+||
T Consensus 77 ~~~~--~~~~~~~ei~~-----------~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~At 143 (540)
T 3gwf_A 77 STWK--TTYITQPEILE-----------YLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAV 143 (540)
T ss_dssp CCCS--BSEEEHHHHHH-----------HHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECC
T ss_pred CCCc--ccCCCHHHHHH-----------HHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECC
Confidence 1111 11122222222 24445666777 677766555211222334677777778889999999999
Q ss_pred C--CCCcCCCCCc---CCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC-CCccc----
Q psy9583 541 G--SKARSFPGVK---FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF-LNTVD---- 610 (866)
Q Consensus 541 G--s~p~~~p~~~---~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~-l~~~d---- 610 (866)
| +.|..|+.++ +.+..+++..........+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+ ++.++
T Consensus 144 G~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~ 223 (540)
T 3gwf_A 144 GLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVN 223 (540)
T ss_dssp CSCCSBCCCCCTTGGGCCSEEEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCC
T ss_pred cccccCCCCCCCCccccCCCEEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCC
Confidence 9 5777654443 234445555555555567899999999999999999999999999999999984 33322
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q psy9583 611 EEIAKKAF------------------------------------------------------------------------ 618 (866)
Q Consensus 611 ~~~~~~l~------------------------------------------------------------------------ 618 (866)
+...+.++
T Consensus 224 ~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (540)
T 3gwf_A 224 PEQIAEIKADYDRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFI 303 (540)
T ss_dssp HHHHHHHHHTHHHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 22222211
Q ss_pred -HH---------------------------------HHHcCCEEEe--CceEEEEEEcCCeEEEEEeeCCCCccceeEEE
Q psy9583 619 -HL---------------------------------LNKQGLNIIL--NTKIHDIKINKENVLINYSNKSTNVKTEIITS 662 (866)
Q Consensus 619 -~~---------------------------------l~~~GV~i~~--~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~ 662 (866)
+. |.+.+|+++. ...|+++..++ +.+ .+|. .+
T Consensus 304 ~~~~~~~v~dp~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~g----v~~--~dG~------~~ 371 (540)
T 3gwf_A 304 RAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKG----VVT--EDGV------LH 371 (540)
T ss_dssp HHHHHHHCCSHHHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSE----EEE--TTCC------EE
T ss_pred HHHHHHHcCCHHHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCe----EEc--CCCC------EE
Confidence 00 1134778875 67888886543 333 3776 89
Q ss_pred eccEEEEeeccccCCCCCCccccCeeecCCCcEEeCC--------C--CC-CCCCCEEEe-cccCCCCCcHHHHHHHHHH
Q psy9583 663 IFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND--------N--CE-TNIPNIYAI-GDVVRGPMLAHKAEEEGIM 730 (866)
Q Consensus 663 ~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~--------~--l~-Ts~~~VyA~-GD~a~~~~~~~~A~~~g~~ 730 (866)
++|.||+|||++++..++ .. +.+..++++.+++ + +. .+.||+|++ |..+........+-.|+++
T Consensus 372 ~~DvIV~ATGf~~~~~~~--~~--~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~ 447 (540)
T 3gwf_A 372 ELDVLVFATGFDAVDGNY--RR--IEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEW 447 (540)
T ss_dssp ECSEEEECCCBSCSSHHH--HT--SEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHH
T ss_pred ECCEEEECCccCccccCc--Cc--ceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHH
Confidence 999999999999987442 22 2222222244432 2 22 378999999 8876544567778889999
Q ss_pred HHHHHh
Q psy9583 731 VAEHIS 736 (866)
Q Consensus 731 aa~~i~ 736 (866)
+++.|.
T Consensus 448 i~~~i~ 453 (540)
T 3gwf_A 448 ISDTIG 453 (540)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888774
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-24 Score=246.76 Aligned_cols=198 Identities=20% Similarity=0.219 Sum_probs=127.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
++||+|||||+||+++|.+|++.|++|+|||++ +.+||+|. .++.|..........+..........+.....
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~------~~~GGtw~-~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~ 81 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAG------EDVGGTWY-WNRYPGCRLDTESYAYGYFALKGIIPEWEWSE 81 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCTHHH-HCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSB
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCC------CCCCCccc-cCCCCceeecCchhhcccccCcccccCCCccc
Confidence 589999999999999999999999999999998 78999984 45666433222222221110000000011111
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCc--EEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecC--CCCc
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKI--KFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATG--SKAR 545 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATG--s~p~ 545 (866)
...+...+..+ +....++.++ ++.+++.+..-..+.....+.|.+.+|+++.||+||+||| +.|.
T Consensus 82 ~~~~~~ei~~y-----------l~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~ 150 (545)
T 3uox_A 82 NFASQPEMLRY-----------VNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR 150 (545)
T ss_dssp SSCBHHHHHHH-----------HHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC--
T ss_pred cCCCHHHHHHH-----------HHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc
Confidence 12223333222 2334445555 4555544442112223356777777888999999999999 7777
Q ss_pred CCCCCc---CCCceEecchhhhc-------cccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 546 SFPGVK---FDENLILSNKGALE-------MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 546 ~~p~~~---~~~~~~~t~~~~~~-------~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
.|+.++ +.+..+++...... ....+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.+
T Consensus 151 ~p~ipG~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~ 220 (545)
T 3uox_A 151 MPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW 220 (545)
T ss_dssp -CCCTTGGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred CCCCCCccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence 654443 23344555554444 4446899999999999999999999999999999999985
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-23 Score=238.49 Aligned_cols=193 Identities=15% Similarity=0.242 Sum_probs=129.6
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcccee---cc---ccchhHHHhhHHHHHHhhhhhh
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV---GC---IPSKALLQTSHSFENVKNSFFE 462 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~---g~---~P~~~~~~~~~~~~~~~~~~~~ 462 (866)
.++||+|||||+||+++|.+|++.|++|+|||+. +.+||+|... || +|++.+...... .. ...
T Consensus 20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~------~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~--~~---~~~ 88 (549)
T 4ap3_A 20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAA------SGVGGVWYWNRYPGARCDVESIDYSYSFSP--EL---EQE 88 (549)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCTHHHHCCCTTCBCSSCTTTSSCCSCH--HH---HHH
T ss_pred CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCC------CCCCCccccCCCCCceeCCCchhccccccc--cc---ccC
Confidence 3589999999999999999999999999999998 7899998632 44 454433322110 00 001
Q ss_pred cCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCc--EEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEec
Q psy9583 463 YGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKI--KFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIAT 540 (866)
Q Consensus 463 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViAT 540 (866)
+.+. ....+...+.. .+...+++.++ ++..++.+..-..+.....+.|.+.+|+++.||+||+||
T Consensus 89 ~~~~--~~~~~~~ei~~-----------yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~At 155 (549)
T 4ap3_A 89 WNWS--EKYATQPEILA-----------YLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAA 155 (549)
T ss_dssp CCCS--SSSCBHHHHHH-----------HHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECC
T ss_pred CCCc--cCCCCHHHHHH-----------HHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECc
Confidence 1111 11122222222 23445666776 666665554211222334677777778889999999999
Q ss_pred C--CCCcCCCCCcC---CCceEecchhh-hccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 541 G--SKARSFPGVKF---DENLILSNKGA-LEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 541 G--s~p~~~p~~~~---~~~~~~t~~~~-~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
| +.|..|+.++. .+..+++.... ......+++|+|||+|.+|+|+|..|++.+.+|+++.|.+.+
T Consensus 156 G~~s~p~~p~ipG~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ 226 (549)
T 4ap3_A 156 GPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY 226 (549)
T ss_dssp CSEEECCCCCCTTGGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred CCCCCCCCCCCCCcccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence 9 77776654432 23344554433 233346899999999999999999999999999999999985
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-23 Score=238.20 Aligned_cols=311 Identities=19% Similarity=0.260 Sum_probs=187.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHH--hhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENV--KNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~--~~~~~~~gi~~ 467 (866)
++||+|||||++|+++|..|++.|++|+|||+. +.+||+|. .+|.|..........+... ......+.+.
T Consensus 16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~------~~~GG~w~-~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~- 87 (542)
T 1w4x_A 16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETA------GDVGGVWY-WNRYPGARCDIESIEYCYSFSEEVLQEWNWT- 87 (542)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCTHHH-HCCCTTCBCSSCTTTSSCCSCHHHHHHCCCC-
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCC------CCCCCccc-ccCCCceeecccccccccccChhhhhccCcc-
Confidence 589999999999999999999999999999998 67899984 3355532211110000000 0000011111
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCC--cEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCC--C
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNK--IKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGS--K 543 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--V~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs--~ 543 (866)
....+...+..+ +....++.+ +++.+++.+..-..+.....+.|.+++|.++.||+||+|||. .
T Consensus 88 -~~~~~~~~i~~y-----------l~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~ 155 (542)
T 1w4x_A 88 -ERYASQPEILRY-----------INFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSV 155 (542)
T ss_dssp -BSSCBHHHHHHH-----------HHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCC
T ss_pred -cccCCHHHHHHH-----------HHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCC
Confidence 111122222222 233344444 456655554421111222456676667778999999999994 5
Q ss_pred CcCCCCCc---CCCceEecchhhhc-cccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-Cc----ccHHHH
Q psy9583 544 ARSFPGVK---FDENLILSNKGALE-MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-NT----VDEEIA 614 (866)
Q Consensus 544 p~~~p~~~---~~~~~~~t~~~~~~-~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-~~----~d~~~~ 614 (866)
|..|+.++ +.+..+++.....+ ....+++|+|||+|.+|+|++..+++.+.+|+++.|.+.+. +. +.++..
T Consensus 156 p~~p~i~G~~~f~G~~~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~ 235 (542)
T 1w4x_A 156 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFL 235 (542)
T ss_dssp CCCCCCTTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHH
T ss_pred CCCCCCCCcccCCCceEECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHH
Confidence 66554333 23333555443312 33458999999999999999999999999999999988762 21 111111
Q ss_pred H-----------------------------------------------------------------------HHHHHHH-
Q psy9583 615 K-----------------------------------------------------------------------KAFHLLN- 622 (866)
Q Consensus 615 ~-----------------------------------------------------------------------~l~~~l~- 622 (866)
. .+.+.++
T Consensus 236 ~~~~~~~p~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (542)
T 1w4x_A 236 ADLKKRYAEFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRN 315 (542)
T ss_dssp HHHHTTHHHHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 1 0111111
Q ss_pred ----------------------------------HcCCEEE--eCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccE
Q psy9583 623 ----------------------------------KQGLNII--LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 623 ----------------------------------~~GV~i~--~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~ 666 (866)
+.+|+++ .+..|+++..+ + +.+. + . ++++|.
T Consensus 316 ~~~~~~~~~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~--g--v~~~--d-~------~~~~D~ 382 (542)
T 1w4x_A 316 TVRDPEVAERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPR--G--VRTS--E-R------EYELDS 382 (542)
T ss_dssp HCSSHHHHHHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSS--E--EEES--S-C------EEECSE
T ss_pred HcCCHHHHHhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCC--e--EEeC--C-e------EEecCE
Confidence 1234554 25566666532 2 3333 3 4 899999
Q ss_pred EEEeeccccCCCCCCccccCeeecCCCcEEeCC--------C--CC-CCCCCEEEe-cccCC--CCCcHHHHHHHHHHHH
Q psy9583 667 LLIAIGRIPNTNNLNIDKIGLKVNENNFIIVND--------N--CE-TNIPNIYAI-GDVVR--GPMLAHKAEEEGIMVA 732 (866)
Q Consensus 667 vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~--------~--l~-Ts~~~VyA~-GD~a~--~~~~~~~A~~~g~~aa 732 (866)
||+|||+++++.+ +...++. ..+| +.+++ + +. ...||+|++ |+.+. .+.....|..|+++++
T Consensus 383 ii~atG~~~~~~~--~~~~~i~-g~~G-~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia 458 (542)
T 1w4x_A 383 LVLATGFDALTGA--LFKIDIR-GVGN-VALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVT 458 (542)
T ss_dssp EEECCCCCCTTHH--HHTSEEE-CGGG-CBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHH
T ss_pred EEEcCCccccccC--cCceeeE-CCCC-CCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHH
Confidence 9999999998765 3333332 2234 44443 2 22 368999998 99863 3456689999999999
Q ss_pred HHHhC
Q psy9583 733 EHISG 737 (866)
Q Consensus 733 ~~i~g 737 (866)
++|..
T Consensus 459 ~~i~~ 463 (542)
T 1w4x_A 459 DHIAY 463 (542)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99863
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.1e-21 Score=187.89 Aligned_cols=152 Identities=18% Similarity=0.269 Sum_probs=132.9
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------cc-----cHHHHHHHHHHHHHcCCEEEeCceEEEE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------TV-----DEEIAKKAFHLLNKQGLNIILNTKIHDI 637 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------~~-----d~~~~~~l~~~l~~~GV~i~~~~~v~~i 637 (866)
+++|||||++|+++|..|++.|.+|+++++.+.++. .+ ++++.+.+.+.+++.|++++++ +++++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i 81 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV 81 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence 689999999999999999999999999999886662 23 5788999999999999999999 99999
Q ss_pred EEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCCC
Q psy9583 638 KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG 717 (866)
Q Consensus 638 ~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~ 717 (866)
+.+++.+.+.+. +| ++++|.||+|+|..|+. ++.+|++++ +|+|.||+++||+.|+|||+|||++.
T Consensus 82 ~~~~~~~~v~~~--~g-------~i~ad~vI~A~G~~~~~----~~~~g~~~~-~g~i~vd~~~~t~~~~i~a~GD~~~~ 147 (180)
T 2ywl_A 82 RDMGGVFEVETE--EG-------VEKAERLLLCTHKDPTL----PSLLGLTRR-GAYIDTDEGGRTSYPRVYAAGVARGK 147 (180)
T ss_dssp EECSSSEEEECS--SC-------EEEEEEEEECCTTCCHH----HHHHTCCEE-TTEECCCTTCBCSSTTEEECGGGGTC
T ss_pred EEcCCEEEEEEC--CC-------EEEECEEEECCCCCCCc----cccCCCCcc-CceEEeCCCCCcCCCCEEEeecccCc
Confidence 887666655443 33 68999999999999853 356788888 89999999999999999999999987
Q ss_pred CC-cHHHHHHHHHHHHHHHhCC
Q psy9583 718 PM-LAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 718 ~~-~~~~A~~~g~~aa~~i~g~ 738 (866)
+. +++.|..||++||.||.+.
T Consensus 148 ~~~~~~~A~~~g~~aa~~i~~~ 169 (180)
T 2ywl_A 148 VPGHAIISAGDGAYVAVHLVSD 169 (180)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHhHHHHHHHHHHH
Confidence 76 9999999999999999863
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-20 Score=212.57 Aligned_cols=314 Identities=18% Similarity=0.197 Sum_probs=174.6
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccc--cCCCc--cceeccccchhHHHhh----------------H
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENF--ALGGT--CTNVGCIPSKALLQTS----------------H 451 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~--~~GG~--~~~~g~~P~~~~~~~~----------------~ 451 (866)
||+|||||+||++||..|++.|.+|+||||. ...... .-||. |.+.++.|.+.+.... .
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~ 79 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTS 79 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 7999999999999999999999999999996 111111 12332 2222334433222110 0
Q ss_pred HHHHHhhhhhhcCcccccc-----ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcC
Q psy9583 452 SFENVKNSFFEYGINTQNV-----TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINK 526 (866)
Q Consensus 452 ~~~~~~~~~~~~gi~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~ 526 (866)
.......++..+|+++... ...+...+...+.....+...+...+++.|++++.++.+.+...+.....+.+.+.
T Consensus 80 ~~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v~l~~~~~~v~Gv~v~~~ 159 (472)
T 2e5v_A 80 EAKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLVEIRVKDGKVTGFVTEKR 159 (472)
T ss_dssp HHHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEEEEEEETTEEEEEEETTT
T ss_pred HHHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEEEEEEeCCEEEEEEEEeC
Confidence 0111122344455543220 00000000000000112223344445678999998874432211111112244333
Q ss_pred CceEEEecEEEEecCCCCcCCCCCcCCCceEecchhh----------hcccc--CCCeEEEECCcHHHHHHHHHHHhcCC
Q psy9583 527 TKETITAKYIIIATGSKARSFPGVKFDENLILSNKGA----------LEMIN--VPKKLCIIGAGVIGLEIGSIWRRLGS 594 (866)
Q Consensus 527 ~g~~i~~d~lViATGs~p~~~p~~~~~~~~~~t~~~~----------~~~~~--~~~~vvVIGgG~~glE~A~~l~~~g~ 594 (866)
+ ..+.+|.||+|||+.+..++.... ....+.+.. .++.. .....+++|+| +++++..+...|.
T Consensus 160 ~-g~~~a~~VVlAtGg~~~~~~~~~~--~~~~tGdgi~~a~~aGa~~~d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~ 234 (472)
T 2e5v_A 160 G-LVEDVDKLVLATGGYSYLYEYSST--QSTNIGDGMAIAFKAGTILADMEFVQFHPTVTSLDGE--VFLLTETLRGEGA 234 (472)
T ss_dssp E-EECCCSEEEECCCCCGGGSSSBSS--CTTCSCHHHHHHHHTTCCEECTTCEEEEEEEECGGGC--CEECCTHHHHTTC
T ss_pred C-CeEEeeeEEECCCCCcccCccccC--CCCCchHHHHHHHHcCCCEeCCcceEEEeEEEccCCC--ceeeehhhcCCce
Confidence 3 357899999999998875543211 111122221 11111 11234456766 8888888988898
Q ss_pred cEEEEecCCcCCCcccHHH--------HHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEe-cc
Q psy9583 595 EVTILEMSSNFLNTVDEEI--------AKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FD 665 (866)
Q Consensus 595 ~Vtli~~~~~~l~~~d~~~--------~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~-~D 665 (866)
.+ +..+++++++.++++. ...+.+.+++.|. ++++... + +. +. ..++ .|
T Consensus 235 ~~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~~~~~~~-v~ld~~~--~---~~-----~~----------~~~~~~~ 292 (472)
T 2e5v_A 235 QI-INENGERFLFNYDKRGELAPRDILSRAIYIEMLKGHK-VFIDLSK--I---ED-----FE----------RKFPVVA 292 (472)
T ss_dssp EE-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHHHHHTCC-EEEECTT--C---TT-----HH----------HHCHHHH
T ss_pred EE-ECCCCCCCCccCCcccCcCchhHHHHHHHHHHHhCCc-EEEeccc--h---HH-----HH----------HHhHHHH
Confidence 87 7888889987665543 5666777776653 3322110 0 00 00 1222 46
Q ss_pred EEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCC-CC----CcHHHHHHHHHHHHHHHh
Q psy9583 666 KLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVR-GP----MLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 666 ~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~-~~----~~~~~A~~~g~~aa~~i~ 736 (866)
.++++.|.+|+ +.+..... .....|+|.||+++||++|||||+|||++ +. ++.++|..+|.+.++.+.
T Consensus 293 ~~~~~~G~dp~-~~i~v~p~--~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~ 365 (472)
T 2e5v_A 293 KYLARHGHNYK-VKIPIFPA--AHFVDGGIRVNIRGESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLP 365 (472)
T ss_dssp HHHHHTTCCTT-SCEECEEE--EEEESCEEECCTTCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGG
T ss_pred HHHHHhCcCcc-cceEeehh--hceeCCCeEECCCCccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHH
Confidence 77888999999 66433222 23336889999999999999999999987 33 677778777666655543
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-17 Score=187.78 Aligned_cols=246 Identities=17% Similarity=0.182 Sum_probs=145.0
Q ss_pred HHHHHHhCCcEEEEeEEEE-eccccCc-----ccEEEEEc---CCc--eEEEecEEEEecCCCCcCCCCCcCCCceEecc
Q psy9583 492 ILFLFKKNKIKFFHGHAIF-TGKIQNN-----FHEIQIIN---KTK--ETITAKYIIIATGSKARSFPGVKFDENLILSN 560 (866)
Q Consensus 492 ~~~~~~~~gV~v~~g~~v~-~~~~~~~-----~~~v~v~~---~~g--~~i~~d~lViATGs~p~~~p~~~~~~~~~~t~ 560 (866)
++...++.+..+.+++.+. +...+.+ ...+.|.. ..+ .++.+++||+|||..|..|...+..+..+++.
T Consensus 151 l~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP~~~~~~g~v~Hss 230 (501)
T 4b63_A 151 MRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMPSGLPQDPRIIHSS 230 (501)
T ss_dssp HHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCCTTSCCCTTEEEGG
T ss_pred HHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCCCCCCCCcceeecc
Confidence 4445556666777877766 3221111 12344443 222 67899999999999988776665555444443
Q ss_pred hhhhcc------ccCCCeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCCCc---------ccHHHH---------
Q psy9583 561 KGALEM------INVPKKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFLNT---------VDEEIA--------- 614 (866)
Q Consensus 561 ~~~~~~------~~~~~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l~~---------~d~~~~--------- 614 (866)
+..... ...+|+|+|||+|.+|+|++..|++. +.+|+++.|.+.+.+. +.++..
T Consensus 231 ~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~ 310 (501)
T 4b63_A 231 KYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAA 310 (501)
T ss_dssp GHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHH
T ss_pred ccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHH
Confidence 332211 23579999999999999999999875 6899999998766431 111111
Q ss_pred ----------------------HHHHHHHHH----------cCCEEEeCceEEEEEEcC--CeEEEEEeeC----CCCcc
Q psy9583 615 ----------------------KKAFHLLNK----------QGLNIILNTKIHDIKINK--ENVLINYSNK----STNVK 656 (866)
Q Consensus 615 ----------------------~~l~~~l~~----------~GV~i~~~~~v~~i~~~~--~~~~v~~~~~----~g~~~ 656 (866)
..+.+.+.+ ....+..+..+..+.... +.+.+..... ++...
T Consensus 311 ~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~ 390 (501)
T 4b63_A 311 ERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQHRILPERKITRVEHHGPQSRMRIHLKSSKPESEGAAN 390 (501)
T ss_dssp HHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSSEEECSEEEEEEECCSSSSCEEEEEEESCC-------
T ss_pred HHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccceeecCCcceeeeeecCCCCeEEEEeeeeEEeCCeeEe
Confidence 111111111 123466666776666533 2333332211 11111
Q ss_pred ceeEEEeccEEEEeeccccCCCCCCccc-cCeeecCCCcEEeCCCCCC--------CCCCEEEecccC-----CCCCcHH
Q psy9583 657 TEIITSIFDKLLIAIGRIPNTNNLNIDK-IGLKVNENNFIIVNDNCET--------NIPNIYAIGDVV-----RGPMLAH 722 (866)
Q Consensus 657 ~~~~~~~~D~vi~a~G~~p~~~~l~l~~-~gl~~~~~G~i~Vd~~l~T--------s~~~VyA~GD~a-----~~~~~~~ 722 (866)
.+..++++|.||+|||++|+.....+.. ..+..+.+|.+.|+..++. ..++||+.|-+- +.+.+..
T Consensus 391 ~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls~ 470 (501)
T 4b63_A 391 DVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSV 470 (501)
T ss_dssp -CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBCTTSBBCCCTTTBCTTCEEEECSCCHHHHCTTTTSSTT
T ss_pred CCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeCCCcEEeecCCccCCCceEEecCCCcccCCcchhhHHH
Confidence 2234899999999999999864210111 1355566777888876542 246799999543 2355667
Q ss_pred HHHHHHHHHHHHHhCC
Q psy9583 723 KAEEEGIMVAEHISGQ 738 (866)
Q Consensus 723 ~A~~~g~~aa~~i~g~ 738 (866)
.|++.|+++ +.|+|+
T Consensus 471 ~a~R~~~I~-~~l~g~ 485 (501)
T 4b63_A 471 LAVRGGEMV-QSIFGE 485 (501)
T ss_dssp HHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHH-HHHhcc
Confidence 888888765 455553
|
| >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=144.30 Aligned_cols=81 Identities=25% Similarity=0.486 Sum_probs=77.6
Q ss_pred Cc-cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEec
Q psy9583 1 MA-LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 1 m~-~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~ 79 (866)
|+ +++|+||++|+++.+|+|.+|+|++||.|++||+|++||++|+..+|+||.+|+|.++++++|+.|.+|++|+.++.
T Consensus 1 m~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 1 MGQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (93)
T ss_dssp CCCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred CCcceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCEeCCCCEEEEEec
Confidence 55 68999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC
Q psy9583 80 DI 81 (866)
Q Consensus 80 ~~ 81 (866)
.+
T Consensus 81 ~~ 82 (93)
T 1k8m_A 81 EA 82 (93)
T ss_dssp SC
T ss_pred CC
Confidence 44
|
| >3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=141.07 Aligned_cols=79 Identities=27% Similarity=0.489 Sum_probs=75.8
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC-EEecCCEEEEEecCC
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS-IVTSNQVIALIDTDI 81 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~-~v~~g~~l~~~~~~~ 81 (866)
.++|+||++|+++.+|+|.+|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+ .|++|++|+.++...
T Consensus 5 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 5 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp EEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred ceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 4789999999999999999999999999999999999999999999999999999999999999 899999999998644
|
| >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=145.00 Aligned_cols=81 Identities=37% Similarity=0.621 Sum_probs=77.0
Q ss_pred ccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEE-ecCCEEEEEecC
Q psy9583 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIV-TSNQVIALIDTD 80 (866)
Q Consensus 2 ~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v-~~g~~l~~~~~~ 80 (866)
|.++|+||++|++|.+|+|.+|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+.| .+|++|+.++..
T Consensus 6 ~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~ 85 (98)
T 2dnc_A 6 SGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGSLIGLIVEE 85 (98)
T ss_dssp CCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSCEEEEEECT
T ss_pred ccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCEEcCCCCEEEEEecC
Confidence 3478999999999999999999999999999999999999999999999999999999999999998 999999999875
Q ss_pred Cc
Q psy9583 81 IS 82 (866)
Q Consensus 81 ~~ 82 (866)
.+
T Consensus 86 ~~ 87 (98)
T 2dnc_A 86 GE 87 (98)
T ss_dssp TS
T ss_pred CC
Confidence 43
|
| >1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=149.67 Aligned_cols=80 Identities=28% Similarity=0.503 Sum_probs=76.4
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC-EEecCCEEEEEecCC
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS-IVTSNQVIALIDTDI 81 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~-~v~~g~~l~~~~~~~ 81 (866)
.++|+||++|++|++|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+ .|.+|++|+.++...
T Consensus 27 ~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~~ 106 (128)
T 1y8o_B 27 HMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKE 106 (128)
T ss_dssp EEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESSG
T ss_pred ceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 4789999999999999999999999999999999999999999999999999999999999998 899999999998654
Q ss_pred c
Q psy9583 82 S 82 (866)
Q Consensus 82 ~ 82 (866)
+
T Consensus 107 ~ 107 (128)
T 1y8o_B 107 A 107 (128)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=147.42 Aligned_cols=79 Identities=24% Similarity=0.461 Sum_probs=76.0
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC-EEecCCEEEEEecCC
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS-IVTSNQVIALIDTDI 81 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~-~v~~g~~l~~~~~~~ 81 (866)
.++|+||++|++|.+|+|++|+|++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|+.++...
T Consensus 7 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~i~~~~ 86 (108)
T 2dne_A 7 GQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKP 86 (108)
T ss_dssp CEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEEEESCH
T ss_pred ceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEEEecCc
Confidence 4789999999999999999999999999999999999999999999999999999999999999 899999999998654
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-17 Score=185.23 Aligned_cols=211 Identities=20% Similarity=0.266 Sum_probs=116.6
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccc--cCCCcc--ceeccccchhHHHhhHH---------HHH
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENF--ALGGTC--TNVGCIPSKALLQTSHS---------FEN 455 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~--~~GG~~--~~~g~~P~~~~~~~~~~---------~~~ 455 (866)
+++||+|||||++|++||..|++.|.+|+|||+.+.+.... .-||.| .+.+|.|.+.+....+. ...
T Consensus 3 ~~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (401)
T 2gqf_A 3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD 82 (401)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence 36999999999999999999999999999999973221111 014666 45555554322111110 111
Q ss_pred HhhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-ecccc-CcccEEEEEcCCceEEEe
Q psy9583 456 VKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQ-NNFHEIQIINKTKETITA 533 (866)
Q Consensus 456 ~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~-~~~~~v~v~~~~g~~i~~ 533 (866)
...++..+|++.... ++..++... ....+...+...+++.|++++.++.+. +...+ .....+.+.++++ ++.+
T Consensus 83 ~~~~~~~~Gi~~~~~--~~g~~~p~~--~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~a 157 (401)
T 2gqf_A 83 FISLVAEQGITYHEK--ELGQLFCDE--GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQC 157 (401)
T ss_dssp HHHHHHHTTCCEEEC--STTEEEETT--CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEE
T ss_pred HHHHHHhCCCceEEC--cCCEEccCC--CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEEC
Confidence 122233445442210 000000000 011122234556677899999987764 32110 0023466666555 7999
Q ss_pred cEEEEecCCCCcCCC--------------------CCcCCCceEecchh-h-hcc--ccCCCeEEEEC------------
Q psy9583 534 KYIIIATGSKARSFP--------------------GVKFDENLILSNKG-A-LEM--INVPKKLCIIG------------ 577 (866)
Q Consensus 534 d~lViATGs~p~~~p--------------------~~~~~~~~~~t~~~-~-~~~--~~~~~~vvVIG------------ 577 (866)
|+||+|||+.+.... .+.. ....++..+ + ..+ ...+.++.|+|
T Consensus 158 d~VVlAtG~~s~p~~g~~G~g~~la~~~G~~i~~~~p~l-~~~~~~~~~~~~~~l~g~~~~~~~~i~G~~~~~g~~l~t~ 236 (401)
T 2gqf_A 158 KNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRASL-VPFTYRETDKFLTALSGISLPVTITALCGKSFYNQLLFTH 236 (401)
T ss_dssp SEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEES-CCEECCGGGGGGGGGTTCEEEEEEEETTSCEEEEEEEECS
T ss_pred CEEEECCCCccCCCCCCChHHHHHHHHCCCCcccCccee-eceecCCchhhcccCCCeeeeeEEEEcCCceEEeCEEEEC
Confidence 999999998874211 1111 111122322 2 112 22345666668
Q ss_pred ---CcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccH
Q psy9583 578 ---AGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDE 611 (866)
Q Consensus 578 ---gG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~ 611 (866)
+|+++++++..+.+ |.++++ .++|.++.
T Consensus 237 ~g~sG~~~l~~s~~~~~-~~~~~i-----~~~p~~~~ 267 (401)
T 2gqf_A 237 RGISGPAVLQISNYWQP-TESVEI-----DLLPNHNV 267 (401)
T ss_dssp SEEESHHHHHHTTTCCT-TCCEEE-----ESCSSSCH
T ss_pred CCccHHHHHHHHHHHhc-CCEEEE-----ECCCCCCH
Confidence 89999999988866 777776 36666653
|
| >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.2e-16 Score=132.78 Aligned_cols=76 Identities=42% Similarity=0.759 Sum_probs=74.0
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEec
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~ 79 (866)
++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|.+|++|+.++.
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999975
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-16 Score=128.89 Aligned_cols=75 Identities=33% Similarity=0.729 Sum_probs=73.4
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+.|..|++|+.++
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQVVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCEECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCEECCCCEEEEEE
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999986
|
| >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-17 Score=138.46 Aligned_cols=78 Identities=44% Similarity=0.833 Sum_probs=74.8
Q ss_pred CccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEec
Q psy9583 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 1 m~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~ 79 (866)
|+ ++++||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|.+|++|+.++.
T Consensus 1 m~-~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 1 SS-VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CC-CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CC-cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 44 5799999999999999999999999999999999999999999999999999999999999999999999998864
|
| >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=128.24 Aligned_cols=78 Identities=27% Similarity=0.504 Sum_probs=74.1
Q ss_pred CccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 1 m~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
|+ ++|+||++|++ +|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+.|.+|++|+.++..
T Consensus 1 m~-~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 1 MV-KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp CE-EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred CC-eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 44 68999999998 9999999999999999999999999999999999999999999999999999999999999864
Q ss_pred C
Q psy9583 81 I 81 (866)
Q Consensus 81 ~ 81 (866)
.
T Consensus 78 ~ 78 (80)
T 1qjo_A 78 G 78 (80)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=121.61 Aligned_cols=75 Identities=17% Similarity=0.446 Sum_probs=71.4
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
++++||++|++ + +|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+.|..|++|+.++...
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~g~~l~~i~~~~ 76 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEecCC
Confidence 47999999997 7 999999999999999999999999999999999999999999999999999999999998543
|
| >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-15 Score=125.79 Aligned_cols=78 Identities=22% Similarity=0.549 Sum_probs=74.0
Q ss_pred ccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 2 ~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
++++|+||++| ++.+|+|.+|++++||.|++||+|+++|++|+..+|+||.+|+|.++++++|+.|..|++|+.+...
T Consensus 1 ~~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~v~~g~~l~~i~~~ 78 (81)
T 1gjx_A 1 ALVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAE 78 (81)
T ss_dssp CCEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCS
T ss_pred CcEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCEeCCCCEEEEEEec
Confidence 35789999999 6899999999999999999999999999999999999999999999999999999999999999754
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=141.17 Aligned_cols=157 Identities=20% Similarity=0.275 Sum_probs=112.2
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc-----------------CCCcc-------cHHHHHHHHHHHHHc-C
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN-----------------FLNTV-------DEEIAKKAFHLLNKQ-G 625 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~-----------------~l~~~-------d~~~~~~l~~~l~~~-G 625 (866)
.+|+|||||+.|+++|..|++.|.+|+++++... +...+ ...+...+.+.+++. |
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 4699999999999999999999999999998721 11111 136677888888887 9
Q ss_pred CEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeeccccCCCCC---------------------Ccc
Q psy9583 626 LNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL---------------------NID 683 (866)
Q Consensus 626 V~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l---------------------~l~ 683 (866)
++++ +++|+++..+++.+. +.+ .+|. ++.+|.||+|+|..++...+ .+.
T Consensus 84 v~i~-~~~v~~i~~~~~~v~~v~~--~~g~------~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~ 154 (232)
T 2cul_A 84 LHLF-QATATGLLLEGNRVVGVRT--WEGP------PARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLS 154 (232)
T ss_dssp EEEE-ECCEEEEEEETTEEEEEEE--TTSC------CEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHH
T ss_pred cEEE-EeEEEEEEEeCCEEEEEEE--CCCC------EEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHH
Confidence 9999 579999987766643 433 3564 78999999999995543210 012
Q ss_pred ccCeeecCCCc---------------EEeC-------CCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 684 KIGLKVNENNF---------------IIVN-------DNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 684 ~~gl~~~~~G~---------------i~Vd-------~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
+.+++++...+ ..+. ...+|++|+|||+|||+ .......|+.||+.+|.+|..
T Consensus 155 ~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 155 RLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REGDYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp HTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCccHHHHHHHHHHHHHHHHh
Confidence 23333321110 0011 01237999999999999 778899999999999999964
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=150.63 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=96.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhh-------hh
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNS-------FF 461 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~-------~~ 461 (866)
.+|||+|||||+||++||..|++.|.+|+|||+.. ..+|. .+|.|+............+... ..
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~-----~~iG~----~~Cnps~ggia~~~lv~ei~algg~~~~~~d 97 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI-----DTLGQ----MSCNPAIGGIGKGHLVKEVDALGGLMAKAID 97 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG-----GGTTC----CSSSSEEESTTHHHHHHHHHHTTCSHHHHHH
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc-----ccccc----ccccccccchhhHHHHHHHHHhccHHHHHhh
Confidence 35999999999999999999999999999999862 13332 3455543222111121111110 00
Q ss_pred hcCccccc------c-------ccCHHHHHHHHHHHHHhhhhhHHHHHHh-CCcEEEEeEEEEeccccCcccEEEEEcCC
Q psy9583 462 EYGINTQN------V-------TLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFFHGHAIFTGKIQNNFHEIQIINKT 527 (866)
Q Consensus 462 ~~gi~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~v~~g~~v~~~~~~~~~~~v~v~~~~ 527 (866)
..++.... . ..+-. .+...+...+++ .|++++.+.+..+.. .+...+.|.+.+
T Consensus 98 ~~gi~f~~l~~~kgpav~~~r~~~Dr~-----------~~~~~L~e~Le~~~GV~I~~~~V~~L~~--e~g~V~GV~t~d 164 (651)
T 3ces_A 98 QAGIQFRILNASKGPAVRATRAQADRV-----------LYRQAVRTALENQPNLMIFQQAVEDLIV--ENDRVVGAVTQM 164 (651)
T ss_dssp HHEEEEEEESTTSCGGGCEEEEEECHH-----------HHHHHHHHHHHTCTTEEEEECCEEEEEE--SSSBEEEEEETT
T ss_pred hcccchhhhhcccCcccccchhhCCHH-----------HHHHHHHHHHHhCCCCEEEEEEEEEEEe--cCCEEEEEEECC
Confidence 00111000 0 01111 122234455666 699997665555422 112233455566
Q ss_pred ceEEEecEEEEecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEe
Q psy9583 528 KETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600 (866)
Q Consensus 528 g~~i~~d~lViATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~ 600 (866)
|..+.+|.||+|||+.+..+..++... + .+.+ +| |.++++++..|.++|.+|+.+.
T Consensus 165 G~~I~Ad~VVLATGt~s~~~~i~G~~~---~----------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 165 GLKFRAKAVVLTVGTFLDGKIHIGLDN---Y----------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp SEEEEEEEEEECCSTTTCCEEECC------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred CCEEECCEEEEcCCCCccCccccCccc---C----------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 788999999999998876432222111 0 1233 46 7899999999999999998874
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-14 Score=163.95 Aligned_cols=122 Identities=11% Similarity=-0.003 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCcEEE-EecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeE
Q psy9583 582 GLEIGSIWRRLGSEVTI-LEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEII 660 (866)
Q Consensus 582 glE~A~~l~~~g~~Vtl-i~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~ 660 (866)
..+++..+...+..++. +..... .++..+...+.+.+++.| +++++++|++|+.+++++.+.+. +|.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~v~v~~~--~g~------ 244 (431)
T 3k7m_X 177 ALWMLQLVAAHHYSILGVVLSLDE---VFSNGSADLVDAMSQEIP-EIRLQTVVTGIDQSGDVVNVTVK--DGH------ 244 (431)
T ss_dssp HHHHHHHHHHTTSCHHHHHHTCCE---EETTCTHHHHHHHHTTCS-CEESSCCEEEEECSSSSEEEEET--TSC------
T ss_pred HHHHHHHHHhcCCccceeecchhh---hcCCcHHHHHHHHHhhCC-ceEeCCEEEEEEEcCCeEEEEEC--CCC------
Confidence 34455555555444332 211111 234444566666667778 99999999999988777776654 564
Q ss_pred EEeccEEEEeec--------cccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCC
Q psy9583 661 TSIFDKLLIAIG--------RIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVR 716 (866)
Q Consensus 661 ~~~~D~vi~a~G--------~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~ 716 (866)
++.+|.||+|+| +.|+.+.+.++..+.... ...++|+.+++|+.+++|+.||+..
T Consensus 245 ~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~~~~~-~~~~kv~~~~~~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 245 AFQAHSVIVATPMNTWRRIVFTPALPERRRSVIEEGHG-GQGLKILIHVRGAEAGIECVGDGIF 307 (431)
T ss_dssp CEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHHHCCC-CCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred EEEeCEEEEecCcchHhheeeCCCCCHHHHHHHHhCCC-cceEEEEEEECCCCcCceEcCCCCE
Confidence 689999999999 888887643333333222 3349999999999999999999864
|
| >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-14 Score=120.27 Aligned_cols=74 Identities=27% Similarity=0.515 Sum_probs=70.0
Q ss_pred CccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 1 MALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 1 m~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
|+ ++|++|++ |+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+.|..|++|+.+...
T Consensus 1 m~-~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 1 MV-KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp CC-SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred CC-cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 55 57999988 899999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q psy9583 81 I 81 (866)
Q Consensus 81 ~ 81 (866)
+
T Consensus 74 ~ 74 (85)
T 2k7v_A 74 G 74 (85)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-11 Score=140.14 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=98.0
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhh-------hhh
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKN-------SFF 461 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~-------~~~ 461 (866)
.+|||+|||||+||++||..|++.|.+|+|||+.. ..+|+ .+|.|+..........+.+.. ...
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~-----~~iG~----~~Cnps~GGia~g~lv~eldalgg~~~~~~d 96 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNA-----DTIGQ----MSCNPAIGGIAKGIVVREIDALGGEMGKAID 96 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG-----GGTTC----CCSCSEEECTTHHHHHHHHHHHTCSHHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecc-----cccCC----cCccccccccchHHHHHHHHHhhhHHHHHhh
Confidence 35999999999999999999999999999999862 13442 245554321111111111110 000
Q ss_pred hcCccccc------c-------ccCHHHHHHHHHHHHHhhhhhHHHHHHh-CCcEEEEeEEEEeccccCcccEEEEEcCC
Q psy9583 462 EYGINTQN------V-------TLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFFHGHAIFTGKIQNNFHEIQIINKT 527 (866)
Q Consensus 462 ~~gi~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~v~~g~~v~~~~~~~~~~~v~v~~~~ 527 (866)
..++.... . ..+-. .+...+...+++ .+++++.+.+..+.. .+.....|.+.+
T Consensus 97 ~~gi~f~~l~~~kGpav~~~r~~~Dr~-----------~~~~~L~~~Le~~~GVeI~~~~Vt~L~~--e~g~V~GV~t~d 163 (637)
T 2zxi_A 97 QTGIQFKMLNTRKGKAVQSPRAQADKK-----------RYREYMKKVCENQENLYIKQEEVVDIIV--KNNQVVGVRTNL 163 (637)
T ss_dssp HHEEEEEEESTTSCGGGCEEEEEECHH-----------HHHHHHHHHHHTCTTEEEEESCEEEEEE--SSSBEEEEEETT
T ss_pred hcccceeecccccCccccchhhhCCHH-----------HHHHHHHHHHHhCCCCEEEEeEEEEEEe--cCCEEEEEEECC
Confidence 11111100 0 01111 122234445666 599997665544422 112223355566
Q ss_pred ceEEEecEEEEecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEe
Q psy9583 528 KETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600 (866)
Q Consensus 528 g~~i~~d~lViATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~ 600 (866)
|..+.+|.||+|||+.+..+..++. ..+. +.+ .|+.++++++..|.++|.++..+.
T Consensus 164 G~~i~AdaVVLATG~~s~~~~~~G~---~~~~----------~Gr----~G~~~A~~la~~L~~lG~~v~~l~ 219 (637)
T 2zxi_A 164 GVEYKTKAVVVTTGTFLNGVIYIGD---KMIP----------GGR----LGEPRSEGLSDFYRRFDFPLIRFK 219 (637)
T ss_dssp SCEEECSEEEECCTTCBTCEEEETT---EEEE----------CSB----TTBCCBCTHHHHHHHTTCCCEEEE
T ss_pred CcEEEeCEEEEccCCCccCceeccc---eecC----------CCC----CCchhHHHHHHHHHhcCCceEEec
Confidence 7889999999999987653321111 0010 122 246678999999999998876653
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=100.42 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=61.8
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEec
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~ 79 (866)
.+|+|.+|++++||.|++||+|+++|++|...+|.||.+|+|.++++++|+.|..|++|+.+..
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGDVLLELSN 69 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTCEEEEEGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCEECCCCEEEEEeC
Confidence 4699999999999999999999999999999999999999999999999999999999999874
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-10 Score=135.19 Aligned_cols=172 Identities=17% Similarity=0.178 Sum_probs=98.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhh-------hhhh
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKN-------SFFE 462 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~-------~~~~ 462 (866)
+|||+|||||+||++||..|++.|.+|+|||+.. ..+|+. +|.|+.......+..+.+.. ....
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~-----~~iG~~----~c~ps~gGia~~~lv~el~al~g~~~~~~d~ 91 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDL-----SAVARM----SCNPAIGGVAKGQITREIDALGGEMGKAIDA 91 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG-----GGTTCC----SSCSEEECHHHHHHHHHHHHHTCSHHHHHHH
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecc-----cccCCC----ccccchhhhhHHHHHHHHHhcccHHHHHHHh
Confidence 5999999999999999999999999999999862 135542 35554322221222221111 0001
Q ss_pred cCccccc-------------cccCHHHHHHHHHHHHHhhhhhHHHHHHh-CCcEEEEeEEEEeccccCcccEEE-EEcCC
Q psy9583 463 YGINTQN-------------VTLNLQKMLERKNNIIKKNNSGILFLFKK-NKIKFFHGHAIFTGKIQNNFHEIQ-IINKT 527 (866)
Q Consensus 463 ~gi~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gV~v~~g~~v~~~~~~~~~~~v~-v~~~~ 527 (866)
.++.... ...+-.. +...+...+++ .+++++.+.+..+.. +.+.+. |.+.+
T Consensus 92 ~gi~f~~l~~~kgpav~~~r~~~Dr~~-----------l~~~L~~~l~~~~GV~I~~~~V~~L~~---d~g~V~GV~t~~ 157 (641)
T 3cp8_A 92 TGIQFRMLNRSKGPAMHSPRAQADKTQ-----------YSLYMRRIVEHEPNIDLLQDTVIGVSA---NSGKFSSVTVRS 157 (641)
T ss_dssp HEEEEEEECSSSCTTTCEEEEEECHHH-----------HHHHHHHHHHTCTTEEEEECCEEEEEE---ETTEEEEEEETT
T ss_pred cCCchhhcccccCccccchhhhcCHHH-----------HHHHHHHHHHhCCCCEEEeeEEEEEEe---cCCEEEEEEECC
Confidence 1111100 0111111 12233445566 499997775554422 123443 55566
Q ss_pred ceEEEecEEEEecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEe
Q psy9583 528 KETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600 (866)
Q Consensus 528 g~~i~~d~lViATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~ 600 (866)
|..+.+|.||+|||+.+..+..++ ..-+. ..+++ |+.++++++..|.+.|.+|..+.
T Consensus 158 G~~i~Ad~VVLATG~~s~~~i~~G---~~~~~----------~g~~v---G~~~a~~la~~L~~~G~kv~~l~ 214 (641)
T 3cp8_A 158 GRAIQAKAAILACGTFLNGLIHIG---MDHFP----------GGRST---AEPPVEGLTESLASLGFSFGRLK 214 (641)
T ss_dssp SCEEEEEEEEECCTTCBTCEEEET---TEEEE----------CSSST---TSCCBCSHHHHHHHTTCCEEEEE
T ss_pred CcEEEeCEEEECcCCCCCccceee---eeeec----------ccccc---CCchhhhhHHHHHhCCceEEeec
Confidence 778999999999998765322111 00000 11211 46788899999999999987653
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-12 Score=112.14 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=29.4
Q ss_pred cEEEecCCCCCCC----CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 3 LIEVKIPKLSESI----SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 3 ~~~~~~p~~g~~~----~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
..+|++|+.++.. ..|+|.+|++++||.|++||+|+++|++|+..+|+||.+|+|.++.+++|+.|.+|++|+.++
T Consensus 15 ~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~ie 94 (94)
T 2jku_A 15 TENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94 (94)
T ss_dssp ---------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred CEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCEECCCCEEEEEC
Confidence 4578999998875 589999999999999999999999999999999999999999999999999999999998874
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.9e-12 Score=106.12 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=62.0
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
.+|+|.+|++++||.|++||+|++||++|+..+|+||.+|+|.++. ++|+.|.+|++|+.++...
T Consensus 12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~V~~G~~l~~i~~~~ 76 (84)
T 2kcc_A 12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAVLEAGCVVARLELDD 76 (84)
T ss_dssp SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCCCCTTCCCEEEECSC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCEECCCCEEEEEeCCC
Confidence 5699999999999999999999999999999999999999999999 9999999999999998654
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.1e-11 Score=104.49 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=61.9
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
.+|+|.+|++++||.|++||+|+++|++|+..+|+||.+|+|. +++++|+.|..|++|+.+....
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~V~~G~~l~~i~~~~ 88 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAVLEAGCVVARLELDD 88 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCEECSSCEEEEECCSC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCEECCCCEEEEEEcCC
Confidence 5799999999999999999999999999999999999999999 9999999999999999997543
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-10 Score=134.60 Aligned_cols=33 Identities=27% Similarity=0.536 Sum_probs=31.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||+|||||+||++||+.|++ |.+|+||||.+
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~ 40 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP 40 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence 5899999999999999999999 99999999973
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=133.70 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=39.0
Q ss_pred EEeCCCCCC-CCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 695 IIVNDNCET-NIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 695 i~Vd~~l~T-s~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
|.+|+.|+| +++|+|+|||+++...-...|..+|..+|+.|+.
T Consensus 497 i~~~~~~~~~~~~gly~~GegaG~a~gi~~Aa~~G~~~a~~i~~ 540 (549)
T 3nlc_A 497 IKRGKDFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVAEAVAR 540 (549)
T ss_dssp CCCTTTTSCTTCBTEEECHHHHTSCCSHHHHHHHHHHHHHHHHH
T ss_pred EEECCCceECCcCCEEEccccCChhhHHHHHHHHHHHHHHHHHH
Confidence 678899998 8999999999999888889999999999998864
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-10 Score=95.35 Aligned_cols=63 Identities=24% Similarity=0.464 Sum_probs=60.6
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
..|+|.+|++++||.|++||+|++++++|...+|.||.+|+|.++.+++|+.|..|++|+.++
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~v~~g~~l~~i~ 74 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQPLIELG 74 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCEECCCCEEEEEC
Confidence 469999999999999999999999999999999999999999999999999999999999874
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.4e-10 Score=132.72 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=32.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCC--CeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~ 423 (866)
.+||||||||+||++||+.|++.| .+|+||||..
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~ 40 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVY 40 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence 589999999999999999999999 9999999973
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-10 Score=96.12 Aligned_cols=63 Identities=25% Similarity=0.377 Sum_probs=60.7
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.+|+|.+|++++||.|++||+|++++++|+..+|.||.+|+|.++.+++|+.|..|++|+.++
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~v~~G~~l~~i~ 77 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKIG 77 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEEC
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCEECCCCEEEEEC
Confidence 569999999999999999999999999999999999999999999999999999999999874
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.8e-10 Score=100.67 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=63.5
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
..|+|.+|++++||.|++||+|++++++|+..+|.||.+|+|.++.+++|+.|..|++|+.+.....
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~V~~G~~L~~i~~~~~ 87 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTPLVEFEEEES 87 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTCBCEEECCCCS
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCEECCCCEEEEEECCCc
Confidence 4799999999999999999999999999999999999999999999999999999999999986543
|
| >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=96.69 Aligned_cols=62 Identities=19% Similarity=0.320 Sum_probs=58.0
Q ss_pred eEEEEE-------EEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLN-------WHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~-------w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.|+|.+ |++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+.|..|++|+.++
T Consensus 12 ~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~V~~G~~L~~i~ 80 (80)
T 1bdo_A 12 VGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCEECCCCEEEEEC
Confidence 366665 69999999999999999999999999999999999999999999999999999874
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.04 E-value=8e-10 Score=117.31 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=113.5
Q ss_pred CeEEEECCcHHHHHHHHHHHhc-CCcEEEEecCCcCCCc--------------------------------------ccH
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL-GSEVTILEMSSNFLNT--------------------------------------VDE 611 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~-g~~Vtli~~~~~~l~~--------------------------------------~d~ 611 (866)
.+|+|||||++|+.+|..|++. |.+|+++++.+.+... ...
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4799999999999999999997 9999999998754210 224
Q ss_pred HHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeE-EEEEee-------CCCCccceeEEEeccEEEEeeccccCCCCCCc
Q psy9583 612 EIAKKAFHLLNK-QGLNIILNTKIHDIKINKENV-LINYSN-------KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNI 682 (866)
Q Consensus 612 ~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~-~v~~~~-------~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l 682 (866)
++...+.+.+.+ .|+++++++.|+++..+++.+ .+.+.. .++ ..++...+.+|.||+|+|..++...+..
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g-~~g~~~~i~ad~VV~AtG~~s~~~~~~~ 198 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQ-SCMDPNVMEAKIVVSSCGHDGPFGATGV 198 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTS-SCCCCEEEEEEEEEECCCSSSTTTTHHH
T ss_pred HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCcc-ccCceEEEECCEEEECCCCchHHHHHHH
Confidence 555566666765 699999999999998776654 233321 011 0011347999999999998877643211
Q ss_pred cc---cC--eeecCCCcEEeCC-------CCCCCCCCEEEecccCC----CC---CcHHHHHHHHHHHHHHHhC
Q psy9583 683 DK---IG--LKVNENNFIIVND-------NCETNIPNIYAIGDVVR----GP---MLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 683 ~~---~g--l~~~~~G~i~Vd~-------~l~Ts~~~VyA~GD~a~----~~---~~~~~A~~~g~~aa~~i~g 737 (866)
+. .+ +.+.....+.+|. +.+|+.|++|++||++. .| +.+..+..+|+.+|.++..
T Consensus 199 ~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~ 272 (284)
T 1rp0_A 199 KRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALK 272 (284)
T ss_dssp HHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred HHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHH
Confidence 11 11 1111122244442 34677899999999973 11 2467889999999999975
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-09 Score=128.17 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=32.0
Q ss_pred ccceeeecCCccHHHHHHHHHHC------CCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL------GFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~------g~~V~liek~~ 423 (866)
++||||||||+||++||+.|++. |.+|+||||..
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~ 61 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS 61 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSC
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecC
Confidence 58999999999999999999997 99999999973
|
| >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-09 Score=128.68 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=60.4
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.++
T Consensus 620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~v~~g~~l~~i~ 681 (681)
T 3n6r_A 620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNSLAVDDVIMEFE 681 (681)
T ss_dssp CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCEECTTCEEEEEC
T ss_pred cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCEeCCCCEEEEEC
Confidence 49999999999999999999999999999999999999999999999999999999999885
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.5e-09 Score=121.43 Aligned_cols=149 Identities=20% Similarity=0.285 Sum_probs=80.5
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCccccc--CCCccceec--cccchhHHHhhH---------HH
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFA--LGGTCTNVG--CIPSKALLQTSH---------SF 453 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~--~GG~~~~~g--~~P~~~~~~~~~---------~~ 453 (866)
|+.++||+|||||+||++||..|++.|.+|+|||+.+.+..... -||.|.... +.+...+..... ..
T Consensus 24 ~~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (417)
T 3v76_A 24 VAEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRP 103 (417)
T ss_dssp ----CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCH
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCH
Confidence 44569999999999999999999999999999999832211111 134443222 222111000000 01
Q ss_pred HHHhhhhhhcCcccccccc--CHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceE
Q psy9583 454 ENVKNSFFEYGINTQNVTL--NLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKET 530 (866)
Q Consensus 454 ~~~~~~~~~~gi~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~ 530 (866)
.....++...|+....... -+.. .. ...+...+...+++.|++++.++.+. +.. ....+.|.+.++ +
T Consensus 104 ~~~~~~~~~~Gi~~~~~~~g~~~~~--~~----~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~---~~~~~~V~~~~g-~ 173 (417)
T 3v76_A 104 QDFVALVERHGIGWHEKTLGQLFCD--HS----AKDIIRMLMAEMKEAGVQLRLETSIGEVER---TASGFRVTTSAG-T 173 (417)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEES--SC----HHHHHHHHHHHHHHHTCEEECSCCEEEEEE---ETTEEEEEETTE-E
T ss_pred HHHHHHHHHcCCCcEEeeCCEEeeC--CC----HHHHHHHHHHHHHHCCCEEEECCEEEEEEE---eCCEEEEEECCc-E
Confidence 1122223334443211000 0000 00 01122234555667799999887665 322 224577776666 8
Q ss_pred EEecEEEEecCCCCc
Q psy9583 531 ITAKYIIIATGSKAR 545 (866)
Q Consensus 531 i~~d~lViATGs~p~ 545 (866)
+.+|+||+|||+.+.
T Consensus 174 i~ad~VIlAtG~~S~ 188 (417)
T 3v76_A 174 VDAASLVVASGGKSI 188 (417)
T ss_dssp EEESEEEECCCCSSC
T ss_pred EEeeEEEECCCCccC
Confidence 999999999998763
|
| >3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.2e-10 Score=86.45 Aligned_cols=42 Identities=40% Similarity=0.816 Sum_probs=38.5
Q ss_pred ccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhh
Q psy9583 100 NTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142 (866)
Q Consensus 100 ~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~ 142 (866)
++.+||+||++|+|+|||++.| +|||++|||+++||++|++.
T Consensus 7 ~v~aSPaaRrlA~e~gIdl~~V-~GTG~~GRItk~DV~~~~~~ 48 (58)
T 3rnm_E 7 KTLATPAVRNLAMENNIKLSEV-VGSGKDGRILKEDILNYLEK 48 (58)
T ss_dssp -CCCCHHHHHHHHHTTCCGGGC-CCCSGGGCCCHHHHHHHHHH
T ss_pred CcCcCHHHHHHHHHcCCCHHHC-CCCCCCCceeHHHHHHHHhh
Confidence 4678999999999999999999 89999999999999999753
|
| >2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.6e-10 Score=79.88 Aligned_cols=38 Identities=29% Similarity=0.528 Sum_probs=36.0
Q ss_pred ccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhh
Q psy9583 102 IVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVL 140 (866)
Q Consensus 102 ~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~ 140 (866)
.+||++|++|+|+|+|++.| +|||++|||+++||++|+
T Consensus 2 ~asP~ar~la~e~gidl~~v-~gtG~~gri~k~Dv~~~~ 39 (41)
T 2eq9_C 2 LAVPAARKLARELGIPIEEV-PGSGPLGRVRVEDVRAYA 39 (41)
T ss_dssp CBCHHHHHHHHHTTCCGGGS-CCCSTTCCBCHHHHHHHH
T ss_pred CCChHHHHHHHHcCCChhhc-CCCCCCCcccHHHHHHHh
Confidence 46999999999999999999 899999999999999886
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.7e-09 Score=123.76 Aligned_cols=35 Identities=29% Similarity=0.414 Sum_probs=32.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
..+||||||||.||++||+.|++.|.+|+||||..
T Consensus 4 ~~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~ 38 (660)
T 2bs2_A 4 QYCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (660)
T ss_dssp EECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred ccccEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 35899999999999999999999999999999973
|
| >2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.3e-10 Score=79.13 Aligned_cols=37 Identities=30% Similarity=0.633 Sum_probs=35.4
Q ss_pred cchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhh
Q psy9583 103 VMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVL 140 (866)
Q Consensus 103 ~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~ 140 (866)
+||++|++|+++|+|++.| +|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v-~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRL-RGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGC-CCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhc-CCCCCCCceeHHHHHHHh
Confidence 5899999999999999999 899999999999999886
|
| >2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=6e-10 Score=79.25 Aligned_cols=37 Identities=38% Similarity=0.800 Sum_probs=34.7
Q ss_pred cchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhh
Q psy9583 103 VMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVL 140 (866)
Q Consensus 103 ~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~ 140 (866)
+||++|++|+++|+|++.| .|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v-~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEV-QGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTS-CCCSSSSCCCHHHHTTC-
T ss_pred CCcHHHHHHHHhCCChhhc-CCCCCCCcccHHHHHHHh
Confidence 5899999999999999999 899999999999999875
|
| >3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.1e-09 Score=132.07 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=59.7
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEE
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~ 77 (866)
.|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCEECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCEeCCCCEEEEe
Confidence 3999999999999999999999999999999999999999999999999999999999987
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.9e-09 Score=130.02 Aligned_cols=64 Identities=22% Similarity=0.396 Sum_probs=61.0
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+.|.+|++|+.|+.+
T Consensus 1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A 1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148 (1150)
T ss_dssp SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCEECTTBEEEEEC--
T ss_pred eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 5999999999999999999999999999999999999999999999999999999999999754
|
| >1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A | Back alignment and structure |
|---|
Probab=98.80 E-value=1.6e-09 Score=81.12 Aligned_cols=41 Identities=41% Similarity=0.734 Sum_probs=37.6
Q ss_pred ccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhh
Q psy9583 100 NTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLS 141 (866)
Q Consensus 100 ~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~ 141 (866)
...+||.+|++|+++|||++.| .|||++|||+++||++|+.
T Consensus 9 ~~~asP~aR~lA~e~gidl~~V-~gtG~~GrI~k~DV~~~~~ 49 (51)
T 1bal_A 9 NDALSPAIRRLLAEHNLDASAI-KGTGVGGRLTREDVEKHLA 49 (51)
T ss_dssp SCCCCGGGTTHHHHTTCCTTSS-CCCSTTSCCCHHHHTTTSC
T ss_pred CCCCChHHHHHHHHcCCCcccc-CCCCCCCcccHHHHHHHhc
Confidence 3567999999999999999999 8999999999999998864
|
| >1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-09 Score=79.70 Aligned_cols=40 Identities=40% Similarity=0.748 Sum_probs=37.4
Q ss_pred cccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhh
Q psy9583 101 TIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLS 141 (866)
Q Consensus 101 ~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~ 141 (866)
..+||++|++|+++|+|++.| .|||++|||+++||++|+.
T Consensus 7 ~~asP~ar~la~e~gidl~~v-~gtG~~Gri~k~Dv~~~~~ 46 (49)
T 1w85_I 7 VIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFLA 46 (49)
T ss_dssp CCCCHHHHHHHHHTTCCTTTS-CCCSGGGCCCHHHHHHHHC
T ss_pred ccCChHHHHHHHHcCCCcccc-CCCCCCCcccHHHHHHHHh
Confidence 457999999999999999999 8999999999999999874
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.7e-08 Score=109.37 Aligned_cols=36 Identities=33% Similarity=0.424 Sum_probs=32.6
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
|+.++||+|||||++|+++|+.|++.|++|+|||+.
T Consensus 1 M~~~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~ 36 (369)
T 3dme_A 1 MSTDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAA 36 (369)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 444699999999999999999999999999999997
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.74 E-value=3.9e-08 Score=104.21 Aligned_cols=134 Identities=19% Similarity=0.246 Sum_probs=75.9
Q ss_pred ccceeeecCCccHHHHHHHHHHC-CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~-g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++||+|||||++|+++|..|++. |.+|+|||+. +.+||.+...++.......... .. ..+..+|++..
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~------~~~gg~~~~~~~~~~~~~~~~~-~~----~~l~~~G~~~~ 107 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS------VSPGGGAWLGGQLFSAMIVRKP-AH----LFLDEIGVAYD 107 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESS------SSCCTTTTCCSTTCCCEEEETT-TH----HHHHHHTCCCE
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECC------CCCCCceecCCcchHHHHcCcH-HH----HHHHHcCCCcc
Confidence 58999999999999999999997 9999999998 4556554444433322111110 11 11223344332
Q ss_pred cc---cc--CHHHHHHHHHHHHHhhhhhHHHHH-HhCCcEEEEeEEEE-eccccCcccEEEEEc-----C--C-----ce
Q psy9583 469 NV---TL--NLQKMLERKNNIIKKNNSGILFLF-KKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-----K--T-----KE 529 (866)
Q Consensus 469 ~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-----~--~-----g~ 529 (866)
.. .. +...+ ...+...+ ++.|++++.++.+. +...+.....+.+.. . + ..
T Consensus 108 ~~~~~~~~~~~~~~-----------~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~ 176 (284)
T 1rp0_A 108 EQDTYVVVKHAALF-----------TSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPN 176 (284)
T ss_dssp ECSSEEEESCHHHH-----------HHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCE
T ss_pred cCCCEEEecCHHHH-----------HHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceE
Confidence 10 00 11111 11122233 34699999987765 322111111233321 1 2 16
Q ss_pred EEEecEEEEecCCCCc
Q psy9583 530 TITAKYIIIATGSKAR 545 (866)
Q Consensus 530 ~i~~d~lViATGs~p~ 545 (866)
.+.+|.||+|+|..+.
T Consensus 177 ~i~ad~VV~AtG~~s~ 192 (284)
T 1rp0_A 177 VMEAKIVVSSCGHDGP 192 (284)
T ss_dssp EEEEEEEEECCCSSST
T ss_pred EEECCEEEECCCCchH
Confidence 7999999999998664
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=5.9e-08 Score=95.15 Aligned_cols=110 Identities=19% Similarity=0.269 Sum_probs=69.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
||++|||||++|+.+|..|++.|.+|+|||+.+. .+.... . +. . + .+++.
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~-----~~~~~~-~---~~---------------~-~--~~~~~--- 51 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS-----KVKGVS-R---VP---------------N-Y--PGLLD--- 51 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC-----TTTTCS-C---CC---------------C-S--TTCTT---
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC-----cccCch-h---hh---------------c-c--CCCcC---
Confidence 7999999999999999999999999999998621 010000 0 00 0 0 01100
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
...-.. +...+...+++.|++++.+....+.. ....+.+.++++ ++.+|.||+|+|..|.
T Consensus 52 ~~~~~~-----------~~~~l~~~~~~~gv~v~~~~v~~i~~---~~~~~~v~~~~g-~i~ad~vI~A~G~~~~ 111 (180)
T 2ywl_A 52 EPSGEE-----------LLRRLEAHARRYGAEVRPGVVKGVRD---MGGVFEVETEEG-VEKAERLLLCTHKDPT 111 (180)
T ss_dssp CCCHHH-----------HHHHHHHHHHHTTCEEEECCCCEEEE---CSSSEEEECSSC-EEEEEEEEECCTTCCH
T ss_pred CCCHHH-----------HHHHHHHHHHHcCCEEEeCEEEEEEE---cCCEEEEEECCC-EEEECEEEECCCCCCC
Confidence 011111 12234556778899999883222322 223456666666 8999999999999874
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.70 E-value=4.2e-08 Score=100.64 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=71.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
++||+|||||++|+++|..|++.|.+|+|||+.. ...| .+ |.|........+....+.. ..+
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~-----~~~G-~~----~~~~~~~~~~~~~~~~~~d---~~g----- 64 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL-----DAVM-MP----FLPPKPPFPPGSLLERAYD---PKD----- 64 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG-----GGTT-CC----SSCCCSCCCTTCHHHHHCC---TTC-----
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC-----CcCC-cc----cCccccccchhhHHhhhcc---CCC-----
Confidence 5999999999999999999999999999999962 2233 22 2221100000011111100 000
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
.+- ..+...+...+++. +++++......+.. .+...+.+.+.++.++.+|+||+|||..+.
T Consensus 65 --~~~-----------~~~~~~l~~~~~~~~gv~i~~~~v~~i~~--~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~ 126 (232)
T 2cul_A 65 --ERV-----------WAFHARAKYLLEGLRPLHLFQATATGLLL--EGNRVVGVRTWEGPPARGEKVVLAVGSFLG 126 (232)
T ss_dssp --CCH-----------HHHHHHHHHHHHTCTTEEEEECCEEEEEE--ETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred --CCH-----------HHHHHHHHHHHHcCCCcEEEEeEEEEEEE--eCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 000 11223345556676 99988554333322 111223455566778999999999998644
|
| >1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8.1e-09 Score=80.49 Aligned_cols=41 Identities=32% Similarity=0.581 Sum_probs=38.1
Q ss_pred cccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhh
Q psy9583 101 TIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142 (866)
Q Consensus 101 ~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~ 142 (866)
..+||++|++|+++|||++.| .|||++|||+++||++|+..
T Consensus 5 ~~asPaaRklA~e~gidl~~V-~gtG~~GrItk~DV~~~~~~ 45 (62)
T 1w4i_A 5 VAAMPAARRLAKELGIDLSKV-KGTGPGGVITVEDVKRYAEE 45 (62)
T ss_dssp SEECHHHHHHHHHHTCCGGGS-CCCSTTSEECHHHHHHHHHH
T ss_pred ccCChHHHHHHHHhCCChhhc-CCCCCCCcccHHHHHHHHhc
Confidence 457999999999999999999 89999999999999999863
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-07 Score=109.56 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=32.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+|||||+||++||+.|++.|.+|+||||.
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~ 158 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKE 158 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 589999999999999999999999999999998
|
| >2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K | Back alignment and structure |
|---|
Probab=98.64 E-value=8.8e-09 Score=80.57 Aligned_cols=41 Identities=34% Similarity=0.494 Sum_probs=38.0
Q ss_pred cccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhh
Q psy9583 101 TIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142 (866)
Q Consensus 101 ~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~ 142 (866)
..+||+||++|+++|+|++.| +|||++|||+++||++|+..
T Consensus 10 ~~asPaaRklA~e~gidl~~V-~GTG~~GRItk~DV~~~~~~ 50 (64)
T 2f60_K 10 FRLSPAARNILEKHSLDASQG-TATGPRGIFTKEDALKLVQL 50 (64)
T ss_dssp HHBCHHHHHHHHHTTCCGGGS-CCCSGGGCBCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHcCCChhhc-CCCCCCCcccHHHHHHHHhc
Confidence 457999999999999999999 89999999999999999853
|
| >2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-08 Score=81.06 Aligned_cols=42 Identities=40% Similarity=0.831 Sum_probs=38.6
Q ss_pred ccccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhhh
Q psy9583 100 NTIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLSS 142 (866)
Q Consensus 100 ~~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~~ 142 (866)
...++|++|+||+++|||++.| .|||++|||+++||++|+..
T Consensus 15 ~~~aSPaaRklA~e~gidl~~V-~GTG~~GRItk~DV~~~~~~ 56 (70)
T 2coo_A 15 KTLATPAVRRLAMENNIKLSEV-VGSGKDGRILKEDILNYLEK 56 (70)
T ss_dssp SCCSCHHHHHHHHHHTCCGGGS-CCCSTTSCCCHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHhCCCcccc-CCCCCCCceeHHHHHHHHhc
Confidence 3568999999999999999999 89999999999999999753
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.61 E-value=9.1e-08 Score=107.49 Aligned_cols=137 Identities=20% Similarity=0.217 Sum_probs=77.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhh--hhcCcc-
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSF--FEYGIN- 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~--~~~gi~- 466 (866)
++||+|||||++|+++|..|++.|++|+|+|+.+.+. ...|.+....|.+ ++......+.+.... ...++.
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~---~~~g~~~~~~~~~---~l~~~g~~~~~~~~~~~~~~~~~~ 78 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPR---FVIGESLLPRCME---HLDEAGFLDAVKAQGFQQKFGAKF 78 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSC---CCSCCBCCGGGHH---HHHHTTCHHHHHHTTCEEECEEEE
T ss_pred cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC---CcccCcccHhHHH---HHHHcCChHHHHHcCCcccCCcEE
Confidence 4899999999999999999999999999999973221 1223343333332 111111111111100 000000
Q ss_pred ----------cc---------ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcC
Q psy9583 467 ----------TQ---------NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINK 526 (866)
Q Consensus 467 ----------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~ 526 (866)
.. ...++-.. +...+...+++.|++++.++.+. +.. +.+...+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-----------~~~~L~~~a~~~gv~i~~~~~v~~i~~-~~~~~~v~v~~~ 146 (421)
T 3nix_A 79 VRGKEIADFNFSDQFSNGWNWTWQVPRGN-----------FDKTLADEAARQGVDVEYEVGVTDIKF-FGTDSVTTIEDI 146 (421)
T ss_dssp EETTEEEEEETTSCSSCSCCCEEECCHHH-----------HHHHHHHHHHHHTCEEECSEEEEEEEE-ETTEEEEEEEET
T ss_pred EeCCeeEEEeehhhcCCCCCceeEECHHH-----------HHHHHHHHHHhCCCEEEcCCEEEEEEE-eCCEEEEEEEcC
Confidence 00 00111111 12224444556699999987765 322 122334666666
Q ss_pred Cce--EEEecEEEEecCCCC
Q psy9583 527 TKE--TITAKYIIIATGSKA 544 (866)
Q Consensus 527 ~g~--~i~~d~lViATGs~p 544 (866)
+|. ++.+|.||.|+|...
T Consensus 147 ~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 147 NGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp TSCEEEEEEEEEEECCGGGC
T ss_pred CCCEEEEEcCEEEECCCCch
Confidence 665 799999999999765
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-07 Score=106.14 Aligned_cols=150 Identities=23% Similarity=0.361 Sum_probs=77.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCccccc--CCCccceecccc-chhHHH---hhH---------HHH
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFA--LGGTCTNVGCIP-SKALLQ---TSH---------SFE 454 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~--~GG~~~~~g~~P-~~~~~~---~~~---------~~~ 454 (866)
++||+|||||++|++||..|++.|.+|+|||+.+.+..... -||.|......+ ...+.. ... ...
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNE 105 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHH
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHH
Confidence 48999999999999999999999999999999732211100 123332221111 000000 000 001
Q ss_pred HHhhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEe
Q psy9583 455 NVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITA 533 (866)
Q Consensus 455 ~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~ 533 (866)
....++...|++...... ..++.. ......+...+...+++.||+++.++.+. +.. + +...+.|...++.++.+
T Consensus 106 ~~~~~~~~~G~~~~~~~~--g~~~p~-~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~-~-~~~v~~V~~~~G~~i~A 180 (447)
T 2i0z_A 106 DIITFFENLGVKLKEEDH--GRMFPV-SNKAQSVVDALLTRLKDLGVKIRTNTPVETIEY-E-NGQTKAVILQTGEVLET 180 (447)
T ss_dssp HHHHHHHHTTCCEEECGG--GEEEET-TCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEE-E-TTEEEEEEETTCCEEEC
T ss_pred HHHHHHHhcCCceEEeeC--CEEECC-CCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEe-c-CCcEEEEEECCCCEEEC
Confidence 111122333432210000 000000 00001122334555677899999887665 322 1 12225565566667999
Q ss_pred cEEEEecCCCC
Q psy9583 534 KYIIIATGSKA 544 (866)
Q Consensus 534 d~lViATGs~p 544 (866)
|.||+|||+.+
T Consensus 181 d~VVlAtGg~s 191 (447)
T 2i0z_A 181 NHVVIAVGGKS 191 (447)
T ss_dssp SCEEECCCCSS
T ss_pred CEEEECCCCCc
Confidence 99999999876
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=2.7e-07 Score=107.75 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=32.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
..+||+|||||++|++||+.|++.|.+|+||||.+
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~ 154 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAP 154 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 45899999999999999999999999999999983
|
| >1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=6.3e-08 Score=88.38 Aligned_cols=71 Identities=17% Similarity=0.273 Sum_probs=59.3
Q ss_pred EecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEE---eecCCCEEe---cCC-EEEEEe
Q psy9583 6 VKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKI---IITDGSIVT---SNQ-VIALID 78 (866)
Q Consensus 6 ~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~---~~~~g~~v~---~g~-~l~~~~ 78 (866)
+.+|.+|+ + .-++| +++||.|++||+|++||++|+..+|.||.+|+|.++ +++.++.|. .|+ .|+.+.
T Consensus 39 ~a~~~lG~-i---~~V~l-p~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~Vn~dp~g~GwL~~i~ 113 (136)
T 1zko_A 39 HAQEQLGD-V---VYVDL-PEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPELINKDPEGEGWLFKME 113 (136)
T ss_dssp HHHHHHCS-E---EEEEC-CCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTHHHHCTTTTTCCEEEE
T ss_pred hhcccCCC-c---EEEEe-cCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccCcccCCCCCeEEEEEE
Confidence 44566655 2 22333 499999999999999999999999999999999999 888999998 888 999998
Q ss_pred cCC
Q psy9583 79 TDI 81 (866)
Q Consensus 79 ~~~ 81 (866)
...
T Consensus 114 ~~~ 116 (136)
T 1zko_A 114 ISD 116 (136)
T ss_dssp ESC
T ss_pred ECC
Confidence 543
|
| >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=6.3e-08 Score=87.43 Aligned_cols=66 Identities=24% Similarity=0.346 Sum_probs=60.4
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEeccee-----------------------------eEEecCCCeEEEEEeecCCC
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKVI-----------------------------LELPAPQDGIINKIIITDGS 66 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~-----------------------------~~i~~~~~G~~~~~~~~~g~ 66 (866)
.+|+|.+|++++||.|++||+|+++++.++. ..|.||.+|+|.++.+++|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 4799999999999999999999999987554 48999999999999999999
Q ss_pred EEecC-CEEEEEecCC
Q psy9583 67 IVTSN-QVIALIDTDI 81 (866)
Q Consensus 67 ~v~~g-~~l~~~~~~~ 81 (866)
.|..| ++|+.|....
T Consensus 88 ~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 88 YVSASTTELVRVTNLN 103 (116)
T ss_dssp EECTTTSCCEEEECSC
T ss_pred EEcCCCcEEEEEECCC
Confidence 99999 9999998654
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-08 Score=117.42 Aligned_cols=62 Identities=16% Similarity=0.310 Sum_probs=60.0
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
+|+|++|+|++||.|++||+|++||+||+..+|+||.+|+|.++.+++|+.|.+|++|+.++
T Consensus 657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~V~~G~~L~~i~ 718 (718)
T 3bg3_A 657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718 (718)
T ss_dssp CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSCEEECBC
T ss_pred CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCEeCCCCEEEEeC
Confidence 69999999999999999999999999999999999999999999999999999999998763
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.55 E-value=7.9e-08 Score=106.68 Aligned_cols=36 Identities=42% Similarity=0.747 Sum_probs=33.6
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
|+ +|||+||||||||+++|..|++.|++|+||||.+
T Consensus 2 Me-~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~ 37 (397)
T 3oz2_A 2 ME-TYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRP 37 (397)
T ss_dssp EE-EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CC-CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 54 5999999999999999999999999999999974
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-07 Score=102.45 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=33.6
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
|+.++||+|||||++|+++|++|++.|++|+|||+.
T Consensus 2 m~~~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~ 37 (382)
T 1y56_B 2 LPEKSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKR 37 (382)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 555699999999999999999999999999999996
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=6e-07 Score=103.43 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=32.5
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.++||||||+|+||++||+.|++.|.+|+||||.
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~ 73 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGADVLVLERT 73 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 3599999999999999999999999999999998
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-08 Score=115.45 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=100.1
Q ss_pred EecEEEEecCCCCcCCCCCcCCCceEe---cchhhhcc--------------ccCCCeEEEECCcHHHHHHHHHHHhcCC
Q psy9583 532 TAKYIIIATGSKARSFPGVKFDENLIL---SNKGALEM--------------INVPKKLCIIGAGVIGLEIGSIWRRLGS 594 (866)
Q Consensus 532 ~~d~lViATGs~p~~~p~~~~~~~~~~---t~~~~~~~--------------~~~~~~vvVIGgG~~glE~A~~l~~~g~ 594 (866)
.||++++++|++|..+|........++ ...+.... .....+|+|||||+.|+.+|..|++.|.
T Consensus 37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~ 116 (497)
T 2bry_A 37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA 116 (497)
T ss_dssp HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCC
Confidence 368899999999875432211111111 11222222 1235789999999999999999999999
Q ss_pred cEEEEecCCcCCCc-----cc----------------------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEc-
Q psy9583 595 EVTILEMSSNFLNT-----VD----------------------------EEIAKKAFHLLNKQGLNIILNTKIHDIKIN- 640 (866)
Q Consensus 595 ~Vtli~~~~~~l~~-----~d----------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~- 640 (866)
+|+++++.+.+... .+ .++.+.+.+.+++.|+++++++.|+++..+
T Consensus 117 ~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~ 196 (497)
T 2bry_A 117 RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPP 196 (497)
T ss_dssp EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCC
T ss_pred eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEec
Confidence 99999998765310 01 566677788888899999999999999864
Q ss_pred --CCeEEEEEeeC-CCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 641 --KENVLINYSNK-STNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 641 --~~~~~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
++.+.+.+... +|. ..++.+|.||+|+|..+....
T Consensus 197 ~~~~~~~v~~~~~~~g~----~~~i~ad~VV~A~G~~S~~r~ 234 (497)
T 2bry_A 197 RKGSGWRAQLQPNPPAQ----LASYEFDVLISAAGGKFVPEG 234 (497)
T ss_dssp STTCCBEEEEESCCCHH----HHTCCBSEEEECCCTTCCCTT
T ss_pred CCCCEEEEEEEECCCCC----EEEEEcCEEEECCCCCccccc
Confidence 23556666432 341 126889999999999887643
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=2.7e-07 Score=102.12 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=31.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+|||||++|+++|..|++.|.+|+|||+.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~ 43 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKS 43 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecC
Confidence 589999999999999999999999999999997
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-07 Score=100.25 Aligned_cols=37 Identities=27% Similarity=0.655 Sum_probs=32.9
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
|+.++||+|||||++|+++|+.|++.|++|+|||+.+
T Consensus 1 M~~~~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~ 37 (397)
T 2oln_A 1 MTESYDVVVVGGGPVGLATAWQVAERGHRVLVLERHT 37 (397)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4445899999999999999999999999999999973
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-07 Score=105.99 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=76.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc-
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT- 467 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~- 467 (866)
..+||+|||||++|+++|..|++.|++|+|||+. +.+|+ |...++.|... +. +..+|+..
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~------~~~g~-~~~~~~~~~~~--------~~----l~~~g~~~~ 151 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKR------IKFSR-HNVLHLWPFTI--------HD----LRALGAKKF 151 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC------SSCCC-CCEEECCHHHH--------HH----HHTTTHHHH
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEec------cccCC-CCcccCChhHH--------HH----HHHcCCccc
Confidence 3589999999999999999999999999999997 44543 33333333110 00 11112110
Q ss_pred ------cc-cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-ecccc--CcccEEEEEcC-Cc--eEEEec
Q psy9583 468 ------QN-VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQ--NNFHEIQIINK-TK--ETITAK 534 (866)
Q Consensus 468 ------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~--~~~~~v~v~~~-~g--~~i~~d 534 (866)
.. ..++.. .+...+...+++.|++++.++.+. +...+ .....+.+... +| .++.+|
T Consensus 152 ~~~~~~~~~~~~~~~-----------~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad 220 (497)
T 2bry_A 152 YGRFCTGTLDHISIR-----------QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFD 220 (497)
T ss_dssp CTTTTCTTCCEEEHH-----------HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBS
T ss_pred cccccccccccCCHH-----------HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcC
Confidence 00 001111 122234455667899999987766 32211 12234444333 55 579999
Q ss_pred EEEEecCCCCcC
Q psy9583 535 YIIIATGSKARS 546 (866)
Q Consensus 535 ~lViATGs~p~~ 546 (866)
+||+|+|+.+..
T Consensus 221 ~VV~A~G~~S~~ 232 (497)
T 2bry_A 221 VLISAAGGKFVP 232 (497)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEECCCCCccc
Confidence 999999987653
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-07 Score=101.38 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=32.8
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..++||+|||||++|+++|+.|++.|++|+|||+.
T Consensus 15 ~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~ 49 (382)
T 1ryi_A 15 KRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESG 49 (382)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 34699999999999999999999999999999997
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.3e-07 Score=102.53 Aligned_cols=37 Identities=24% Similarity=0.582 Sum_probs=33.9
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCC-eEEEEeccC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEWK 423 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~~ 423 (866)
|.+++||+|||||++|+++|++|++.|+ +|+|+|+.+
T Consensus 3 ~~~~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~ 40 (438)
T 3dje_A 3 VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYP 40 (438)
T ss_dssp CCTTSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 4456999999999999999999999999 999999973
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.1e-07 Score=97.48 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=42.0
Q ss_pred cccceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceeccccchh
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~ 445 (866)
..+||+|||||++|+++|+.|++. |++|+|||+. ..+||.|...++.+.+.
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~------~~~GGg~~~~g~~~~~~ 130 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAG------VAPGGGAWLGGQLFSAM 130 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESS------SSCCTTTTCCBTTCCCE
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCC------CccCCccccCCccchhh
Confidence 359999999999999999999997 9999999997 56676665656655443
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.7e-07 Score=108.11 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=32.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+||+|||||++|+++|+.|++.|++|+|||+.
T Consensus 271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~ 304 (676)
T 3ps9_A 271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCAD 304 (676)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4589999999999999999999999999999996
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=9.3e-08 Score=118.99 Aligned_cols=62 Identities=19% Similarity=0.366 Sum_probs=53.9
Q ss_pred eEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 17 EATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 17 ~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++.+++|+.|.+|++|+.++
T Consensus 1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~V~~g~~l~~i~ 1164 (1165)
T 2qf7_A 1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164 (1165)
T ss_dssp CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCEECTTBEEEEC-
T ss_pred CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCEECCCCEEEEec
Confidence 69999999999999999999999999999999999999999999999999999999999875
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-06 Score=95.12 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=53.4
Q ss_pred CcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 594 SEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 594 ~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
....++......+. +..+...+.+.+++.|++++.++.|++++.+++++.+.. .++ ++.+|.||+|+|.
T Consensus 135 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~--~~g-------~~~a~~vV~A~G~ 203 (389)
T 2gf3_A 135 NYNAIFEPNSGVLF--SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIET--ANG-------SYTADKLIVSMGA 203 (389)
T ss_dssp TEEEEEETTCEEEE--HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEE--TTE-------EEEEEEEEECCGG
T ss_pred CceEEEeCCCcEEe--HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEe--CCC-------EEEeCEEEEecCc
Confidence 44566655544332 457778888999999999999999999998776665543 232 6899999999997
Q ss_pred ccC
Q psy9583 674 IPN 676 (866)
Q Consensus 674 ~p~ 676 (866)
..+
T Consensus 204 ~~~ 206 (389)
T 2gf3_A 204 WNS 206 (389)
T ss_dssp GHH
T ss_pred cHH
Confidence 643
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.1e-07 Score=101.97 Aligned_cols=34 Identities=35% Similarity=0.578 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~ 40 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA 40 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence 5899999999999999999999999999999973
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=7.5e-07 Score=99.30 Aligned_cols=33 Identities=27% Similarity=0.531 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHH-CC-CeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ-LG-FKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~-~g-~~V~liek~ 422 (866)
++||+|||||++|+++|++|++ .| ++|+|||+.
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~ 55 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSS
T ss_pred cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 5899999999999999999999 99 999999997
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-08 Score=118.85 Aligned_cols=63 Identities=14% Similarity=0.127 Sum_probs=45.9
Q ss_pred HHcCCEEEeCceEEEEEEcCC--e-EEEEEee-CCCCccceeEEEeccEEEEeeccccCCCCCCccccCee
Q psy9583 622 NKQGLNIILNTKIHDIKINKE--N-VLINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLK 688 (866)
Q Consensus 622 ~~~GV~i~~~~~v~~i~~~~~--~-~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~ 688 (866)
++.|+++++++.|+++..+++ . .-+.+.+ .+|+ ..++.+|.||+|+|..|+..+|.+...|..
T Consensus 271 ~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~----~~~i~A~~VIlaaG~~~s~~lL~~sgiG~~ 337 (623)
T 3pl8_A 271 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGD----RFEIKADVYVLTAGAVHNTQLLVNSGFGQL 337 (623)
T ss_dssp EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCC----EEEECEEEEEECSCTTHHHHHHHTTTSSCC
T ss_pred cCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCc----EEEEECCEEEEcCCCcCCHHHHHhcCCCcc
Confidence 345899999999999987643 2 3355553 2343 457899999999999999988655555554
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=96.12 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=32.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+|||||++|+++|++|++.|++|+|||+..
T Consensus 2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~ 35 (372)
T 2uzz_A 2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM 35 (372)
T ss_dssp CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3899999999999999999999999999999973
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.7e-06 Score=100.99 Aligned_cols=33 Identities=27% Similarity=0.490 Sum_probs=31.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+|||+|++|+++|..|++.|++|+|+|+.
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~ 158 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKE 158 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 589999999999999999999999999999998
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.5e-07 Score=103.75 Aligned_cols=37 Identities=30% Similarity=0.510 Sum_probs=33.8
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
|+.++||+|||||+||+++|..|++.|++|+|||+.+
T Consensus 3 m~~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~ 39 (453)
T 3atr_A 3 KELKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKP 39 (453)
T ss_dssp EEEECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSC
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4446999999999999999999999999999999973
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.4e-06 Score=101.29 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=31.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~ 424 (866)
++||+|||||++|+++|..|++.|++|+|||+.+.
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~ 83 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVE 83 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 48999999999999999999999999999999743
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.37 E-value=8.1e-07 Score=98.93 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~ 39 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQAR 39 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4899999999999999999999999999999973
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-06 Score=102.15 Aligned_cols=33 Identities=36% Similarity=0.711 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHC------CCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL------GFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~------g~~V~liek~ 422 (866)
.+||+|||||+||+++|..|++. |.+|+||||.
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~ 73 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA 73 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCC
Confidence 48999999999999999999999 9999999998
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=1.2e-06 Score=104.78 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=31.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+|||||++|+++|+.|++.|++|+|||+.
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~ 296 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCAD 296 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence 589999999999999999999999999999996
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=7.6e-07 Score=96.95 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=35.0
Q ss_pred cceeeecCCccHHHHHHHHHH---CCCeEEEEeccCCCcccccCCCcc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQ---LGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~---~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
+||+|||||++|+++|..|++ .|++|+||||. ...||.+
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~------~~~gg~~ 43 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA------DDSGGRM 43 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSS------SSSCGGG
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECC------CCCccce
Confidence 689999999999999999999 89999999997 4566654
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.4e-07 Score=96.69 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=37.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
+||+|||||||||+||..|++.|++|+||||. +.+||.+.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~------~~~GG~~~ 42 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKS------RGSGGRMS 42 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC------CCCCCccc
Confidence 89999999999999999999999999999998 67788764
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.4e-06 Score=101.53 Aligned_cols=33 Identities=33% Similarity=0.579 Sum_probs=32.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+|||||+||+++|..|++.|++|+|||+.
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~ 55 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERS 55 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCC
Confidence 699999999999999999999999999999997
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.9e-06 Score=95.18 Aligned_cols=41 Identities=34% Similarity=0.578 Sum_probs=37.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
+||+|||||++|++||++|++.|++|+|+|++ +.+||.|..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~------~~~GG~~~~ 41 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKS------AMIGGRFTN 41 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSS------SSSCTTSSE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCC------CCCCceeEE
Confidence 48999999999999999999999999999998 677887754
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.1e-07 Score=100.88 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=32.5
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
+++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~ 56 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVK 56 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 46999999999999999999999999999999973
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=95.35 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.++||+|||||++|+++|++|+ .|++|+|+|+.
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~ 40 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLERE 40 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSS
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECC
Confidence 3589999999999999999999 59999999997
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.31 E-value=1e-06 Score=97.93 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=32.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 35 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3899999999999999999999999999999973
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=98.26 Aligned_cols=33 Identities=39% Similarity=0.571 Sum_probs=31.7
Q ss_pred ccceeeecCCccHHHHHHHHHHC--CCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~ 422 (866)
++||+|||||++|+++|+.|++. |++|+|||+.
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~ 70 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG 70 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 48999999999999999999999 9999999996
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=98.29 E-value=4.3e-06 Score=97.80 Aligned_cols=35 Identities=40% Similarity=0.783 Sum_probs=32.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
..+||||||||+||++||+.|++.|.+|+||||..
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~ 51 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF 51 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 35899999999999999999999999999999973
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=96.34 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=33.2
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKD 424 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~ 424 (866)
..+||+|||||++|+++|..|++.|.+|+|||+.+.
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND 60 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 358999999999999999999999999999999743
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.8e-06 Score=95.35 Aligned_cols=41 Identities=34% Similarity=0.619 Sum_probs=36.6
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
+||+|||||++|++||++|++.|++|+|+|++ +.+||.+..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~------~~~GG~~~~ 41 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERL------PITGGRFTN 41 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSS------SSSBTTSSE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCceEEEeCC------CCCCCceee
Confidence 58999999999999999999999999999998 567776643
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-06 Score=98.15 Aligned_cols=35 Identities=31% Similarity=0.610 Sum_probs=32.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.++||+|||||++|+++|..|++.|.+|+|||+.+
T Consensus 4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~ 38 (535)
T 3ihg_A 4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRP 38 (535)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 35899999999999999999999999999999974
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=94.41 Aligned_cols=35 Identities=26% Similarity=0.534 Sum_probs=32.4
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCe-EEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFK-TACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~-V~liek~~ 423 (866)
..+||+|||||++|+++|..|++.|.+ |+|||+.+
T Consensus 3 ~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 38 (410)
T 3c96_A 3 EPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS 38 (410)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 358999999999999999999999999 99999973
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.1e-06 Score=96.97 Aligned_cols=37 Identities=27% Similarity=0.471 Sum_probs=33.9
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
+.+++||+||||||+|+++|..|++.|.+|+|||+.+
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~ 44 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLV 44 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3446999999999999999999999999999999974
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.3e-06 Score=99.91 Aligned_cols=34 Identities=35% Similarity=0.564 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||||||||+||++||+.|++.|.+|+||||.+
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~ 40 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 5899999999999999999999999999999973
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.24 E-value=8.2e-06 Score=88.85 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=78.4
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC---------------------Ccc-----------cHHHHHHHH
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL---------------------NTV-----------DEEIAKKAF 618 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l---------------------~~~-----------d~~~~~~l~ 618 (866)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +.+ ..++.+.+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 379999999999999999999999999999886531 111 167888888
Q ss_pred HHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 619 HLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 619 ~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
+.+++.|++++++++|+++..+++.+. +... ++ ++.+|.||+|+|..
T Consensus 84 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~--~g-------~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 84 QYEQKYALPVLRPIRVQRVSHFGERLRVVARD--GR-------QWLARAVISATGTW 131 (357)
T ss_dssp HHHHHTTCCEECSCCEEEEEEETTEEEEEETT--SC-------EEEEEEEEECCCSG
T ss_pred HHHHHcCCEEEcCCEEEEEEECCCcEEEEEeC--CC-------EEEeCEEEECCCCC
Confidence 999999999999999999998877765 5432 33 78999999999953
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=6.6e-06 Score=88.26 Aligned_cols=100 Identities=11% Similarity=0.144 Sum_probs=79.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecC--CcC--------CCc----ccHHHHHHHHHHHHHcCCEEEeCceEEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS--SNF--------LNT----VDEEIAKKAFHLLNKQGLNIILNTKIHD 636 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~--~~~--------l~~----~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 636 (866)
.+|+|||+|+.|+.+|..|++.|.+|+++++. ..+ .+. ...++.+.+.+.+++.|++++. ..+.+
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 94 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL-DIVEK 94 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE-SCEEE
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE-EEEEE
Confidence 58999999999999999999999999999986 111 011 2367788888889999999999 99999
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+..+++.+.+... ++. .+.+|.+++|+|..|....
T Consensus 95 i~~~~~~~~v~~~--~g~------~~~~d~lvlAtG~~~~~~~ 129 (323)
T 3f8d_A 95 IENRGDEFVVKTK--RKG------EFKADSVILGIGVKRRKLG 129 (323)
T ss_dssp EEEC--CEEEEES--SSC------EEEEEEEEECCCCEECCCC
T ss_pred EEecCCEEEEEEC--CCC------EEEcCEEEECcCCCCccCC
Confidence 9887766666554 554 8999999999999887653
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.8e-06 Score=96.08 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 38 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 38 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 5899999999999999999999999999999973
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.2e-06 Score=95.08 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=32.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+||||||+|+++|..|++.|.+|+|||+.+
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~ 45 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLP 45 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 5899999999999999999999999999999974
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.8e-06 Score=88.68 Aligned_cols=41 Identities=34% Similarity=0.489 Sum_probs=35.6
Q ss_pred cccceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCcc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~ 435 (866)
..+||+|||||++|++||..|++. |++|+|+|+. ..+||.+
T Consensus 64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~------~~~ggg~ 106 (326)
T 2gjc_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS------VAPGGGS 106 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS------SSCCTTT
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecC------ccccccc
Confidence 357999999999999999999998 9999999997 5566444
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.5e-06 Score=96.83 Aligned_cols=34 Identities=18% Similarity=0.371 Sum_probs=32.2
Q ss_pred cccceeeecCCccHHHHHHHHHH---CCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQ---LGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~---~g~~V~liek~ 422 (866)
+.+||+|||||++|+++|..|++ .|.+|+|||+.
T Consensus 4 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~ 40 (538)
T 2aqj_A 4 PIKNIVIVGGGTAGWMAASYLVRALQQQANITLIESA 40 (538)
T ss_dssp BCCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCC
Confidence 35899999999999999999999 99999999996
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.3e-06 Score=96.43 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=32.6
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+||+|||||++|+++|..|+++|++|+|+|++
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~ 50 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMN 50 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4699999999999999999999999999999997
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-05 Score=91.32 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=31.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCC-CeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG-FKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~ 422 (866)
++||+|||||++|+++|++|++.| .+|+|||+.
T Consensus 23 ~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~ 56 (448)
T 3axb_A 23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56 (448)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccC
Confidence 599999999999999999999999 999999993
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=7e-06 Score=88.50 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=81.7
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC---------------Cc----ccHHHHHHHHHHHHHcCCEEEeC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL---------------NT----VDEEIAKKAFHLLNKQGLNIILN 631 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l---------------~~----~d~~~~~~l~~~l~~~GV~i~~~ 631 (866)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+.+.+++.|++++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE 87 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence 579999999999999999999999999999987432 11 13677888888888899999999
Q ss_pred ceEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeecc---ccCCCC
Q psy9583 632 TKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGR---IPNTNN 679 (866)
Q Consensus 632 ~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~---~p~~~~ 679 (866)
+.|+++...++ .+.+.+. ++ ++.+|.+|+|+|. .|....
T Consensus 88 ~~v~~i~~~~~~~~~v~~~--~g-------~~~~d~vVlAtG~~~~~p~~~~ 130 (332)
T 3lzw_A 88 QAVESVEKQADGVFKLVTN--EE-------THYSKTVIITAGNGAFKPRKLE 130 (332)
T ss_dssp CCEEEEEECTTSCEEEEES--SE-------EEEEEEEEECCTTSCCEECCCC
T ss_pred CEEEEEEECCCCcEEEEEC--CC-------EEEeCEEEECCCCCcCCCCCCC
Confidence 99999988765 5566553 33 4899999999999 776543
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.1e-06 Score=99.74 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=31.9
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCC-eEEEEecc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEW 422 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~ 422 (866)
..++||+|||||++|+++|++|++.|. +|+|||+.
T Consensus 2 ~~~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~ 37 (830)
T 1pj5_A 2 ASTPRIVIIGAGIVGTNLADELVTRGWNNITVLDQG 37 (830)
T ss_dssp --CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 346999999999999999999999998 99999997
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=8.7e-06 Score=88.00 Aligned_cols=103 Identities=16% Similarity=0.185 Sum_probs=82.6
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC----cC------------CCc-----ccHHHHHHHHHHHHHcCCEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS----NF------------LNT-----VDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~----~~------------l~~-----~d~~~~~~l~~~l~~~GV~i 628 (866)
.++|+|||||+.|+.+|..|++.|.+|+++++.+ .+ .+. ...++...+.+.+++.|+++
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~i 101 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTEI 101 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence 4789999999999999999999999999999954 11 111 24578888999999999999
Q ss_pred EeCceEEEEEEcCCeEEEEEee-CCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 629 ILNTKIHDIKINKENVLINYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+.++ +.++..+++.+.+.... .++. .+.+|.+|+|+|.+|....
T Consensus 102 ~~~~-v~~i~~~~~~~~v~~~~~~~~~------~~~~d~vvlAtG~~~~~~~ 146 (338)
T 3itj_A 102 ITET-VSKVDLSSKPFKLWTEFNEDAE------PVTTDAIILATGASAKRMH 146 (338)
T ss_dssp ECSC-EEEEECSSSSEEEEETTCSSSC------CEEEEEEEECCCEEECCCC
T ss_pred EEeE-EEEEEEcCCEEEEEEEecCCCc------EEEeCEEEECcCCCcCCCC
Confidence 9988 99998877777666532 1333 7899999999999887654
|
| >1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-06 Score=79.05 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=53.2
Q ss_pred EecCCCCCCCCeEEEEEEEe-CCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC---EEe---cCC-EEEEE
Q psy9583 6 VKIPKLSESISEATLLNWHK-KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS---IVT---SNQ-VIALI 77 (866)
Q Consensus 6 ~~~p~~g~~~~~g~i~~w~~-~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~---~v~---~g~-~l~~~ 77 (866)
+.+|.+|+ |+...+ ++||.|++||++++||++|+..+|.||.+|+|.+++.+.++ .|. -|+ -|+.+
T Consensus 30 ~a~~~lG~------i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i 103 (131)
T 1hpc_A 30 HAQDHLGE------VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGLINSSPYEDGWMIKI 103 (131)
T ss_dssp HHHHHHCS------EEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTHHHHCTTTTTCCEEE
T ss_pred hhcccCCC------ceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhhhccCCCCCceEEEE
Confidence 34555555 444444 99999999999999999999999999999999999865544 453 454 67777
Q ss_pred ecC
Q psy9583 78 DTD 80 (866)
Q Consensus 78 ~~~ 80 (866)
...
T Consensus 104 ~~~ 106 (131)
T 1hpc_A 104 KPT 106 (131)
T ss_dssp EES
T ss_pred EEC
Confidence 643
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.8e-05 Score=85.60 Aligned_cols=96 Identities=15% Similarity=0.118 Sum_probs=78.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC---------------Cc----ccHHHHHHHHHHHHHcCCEEEeC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL---------------NT----VDEEIAKKAFHLLNKQGLNIILN 631 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l---------------~~----~d~~~~~~l~~~l~~~GV~i~~~ 631 (866)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.+. +. ...++...+.+.+++.+++++++
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 85 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSLG 85 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEES
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEeC
Confidence 579999999999999999999999999999876541 11 12567777888888889999999
Q ss_pred ceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 632 ~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
+.|+++..+++.+.+.+ .++. ++.+|.+|+|+|..
T Consensus 86 ~~v~~i~~~~~~~~v~~--~~g~------~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 86 ERAETLEREGDLFKVTT--SQGN------AYTAKAVIIAAGVG 120 (335)
T ss_dssp CCEEEEEEETTEEEEEE--TTSC------EEEEEEEEECCTTS
T ss_pred CEEEEEEECCCEEEEEE--CCCC------EEEeCEEEECCCCC
Confidence 99999988766555554 3554 78999999999983
|
| >3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.3e-06 Score=76.42 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=52.9
Q ss_pred EecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC---EEe---cCC-EEEEEe
Q psy9583 6 VKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS---IVT---SNQ-VIALID 78 (866)
Q Consensus 6 ~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~---~v~---~g~-~l~~~~ 78 (866)
+.+|.+|+ +...++ .++|++|++||++|+||++|+..+|.||.+|+|.+++.+.++ .+. -|+ -|+.+.
T Consensus 31 ~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~ 105 (128)
T 3a7l_A 31 HAQELLGD-MVFVDL----PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIK 105 (128)
T ss_dssp HHHHHHCS-EEEEEC----CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEE
T ss_pred HHhccCCc-eEEEEe----cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEE
Confidence 34555655 333333 499999999999999999999999999999999999865544 344 455 677776
Q ss_pred cC
Q psy9583 79 TD 80 (866)
Q Consensus 79 ~~ 80 (866)
..
T Consensus 106 ~~ 107 (128)
T 3a7l_A 106 AS 107 (128)
T ss_dssp ES
T ss_pred EC
Confidence 43
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.10 E-value=5.4e-06 Score=95.27 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=85.4
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC------------------------------------C------C
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF------------------------------------L------N 607 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~------------------------------------l------~ 607 (866)
..+|+|||||+.|+.+|..|++.|.+|+++++++.+ + +
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 468999999999999999999999999999987532 0 0
Q ss_pred cc------------------------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCcc
Q psy9583 608 TV------------------------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVK 656 (866)
Q Consensus 608 ~~------------------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~ 656 (866)
.+ ...+.+.+.+.+++.|++++++++|+++..+++.+. +.+. +|.
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~--~G~-- 262 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLS--NGE-- 262 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEET--TSC--
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEEC--CCC--
Confidence 00 145666777888889999999999999988776544 5443 665
Q ss_pred ceeEEEeccEEEEeeccccCCCCCCccccCeeec
Q psy9583 657 TEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN 690 (866)
Q Consensus 657 ~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~ 690 (866)
++.+|.||+|+|..+...+..+...|+.+.
T Consensus 263 ----~i~Ad~VVlA~G~~s~~~~~~l~~~Gi~~~ 292 (549)
T 3nlc_A 263 ----EIKSRHVVLAVGHSARDTFEMLHERGVYME 292 (549)
T ss_dssp ----EEECSCEEECCCTTCHHHHHHHHHTTCCCE
T ss_pred ----EEECCEEEECCCCChhhHHHHHHHcCCCcc
Confidence 799999999999987532211344455543
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-05 Score=83.78 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=78.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC---------Cc----ccHHHHHHHHHHHHHc-CCEEEeCceEEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL---------NT----VDEEIAKKAFHLLNKQ-GLNIILNTKIHD 636 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l---------~~----~d~~~~~~l~~~l~~~-GV~i~~~~~v~~ 636 (866)
.+|+|||||+.|+.+|..|++.|.+|+++++.+... +. ...++...+.+.+++. ++.++. .+++.
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v~~ 81 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVE-GRVTD 81 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEE-SCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEE-eEEEE
Confidence 479999999999999999999999999999743211 11 1356777788888876 788875 58999
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+..+++.+.+.+. ++. ++.+|.+|+|+|..|....
T Consensus 82 i~~~~~~~~v~~~--~g~------~~~~d~vviAtG~~~~~~~ 116 (297)
T 3fbs_A 82 AKGSFGEFIVEID--GGR------RETAGRLILAMGVTDELPE 116 (297)
T ss_dssp EEEETTEEEEEET--TSC------EEEEEEEEECCCCEEECCC
T ss_pred EEEcCCeEEEEEC--CCC------EEEcCEEEECCCCCCCCCC
Confidence 9888777766664 555 7999999999999887643
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.3e-05 Score=89.28 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=79.0
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-----------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT----------------------------------------- 608 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 608 (866)
..+|+|||||..|+.+|..|++.|.+|+++++.+.+...
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 106 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF 106 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence 458999999999999999999999999999987753100
Q ss_pred -----------------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEecc
Q psy9583 609 -----------------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665 (866)
Q Consensus 609 -----------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D 665 (866)
...++.+.+.+.+++.|++++++++|+++..+++++.+... +| ++.+|
T Consensus 107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~--~g-------~i~ad 177 (417)
T 3v76_A 107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTS--AG-------TVDAA 177 (417)
T ss_dssp HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEET--TE-------EEEES
T ss_pred HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEEC--Cc-------EEEee
Confidence 01256677788888899999999999999988777666543 33 68999
Q ss_pred EEEEeeccccC
Q psy9583 666 KLLIAIGRIPN 676 (866)
Q Consensus 666 ~vi~a~G~~p~ 676 (866)
.||+|+|..+.
T Consensus 178 ~VIlAtG~~S~ 188 (417)
T 3v76_A 178 SLVVASGGKSI 188 (417)
T ss_dssp EEEECCCCSSC
T ss_pred EEEECCCCccC
Confidence 99999998763
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.08 E-value=4.1e-06 Score=93.31 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=31.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++|+||||||+|+++|..|++.|++|+||||.+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 579999999999999999999999999999974
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.8e-05 Score=82.96 Aligned_cols=99 Identities=19% Similarity=0.213 Sum_probs=78.8
Q ss_pred eEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCc-----------CCCc-----ccHHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSN-----------FLNT-----VDEEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~-----------~l~~-----~d~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
+++|||+|+.|+.+|..|++.|. +|+++++... ..+. ...++.+.+.+.+++.|++++. .++
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~v 81 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM-TAV 81 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC-SCE
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE-EEE
Confidence 68999999999999999999999 9999998531 0111 1256777888888889999998 789
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.++..+++.+.+.+. ++. ++.+|.+|+|+|..|....
T Consensus 82 ~~i~~~~~~~~v~~~--~g~------~~~~~~vv~AtG~~~~~~~ 118 (311)
T 2q0l_A 82 QRVSKKDSHFVILAE--DGK------TFEAKSVIIATGGSPKRTG 118 (311)
T ss_dssp EEEEEETTEEEEEET--TSC------EEEEEEEEECCCEEECCCC
T ss_pred EEEEEcCCEEEEEEc--CCC------EEECCEEEECCCCCCCCCC
Confidence 999887776666553 555 7999999999999886544
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-05 Score=91.31 Aligned_cols=33 Identities=27% Similarity=0.348 Sum_probs=32.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~ 35 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQ 35 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCEEEEECC
Confidence 589999999999999999999999999999997
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-05 Score=85.58 Aligned_cols=98 Identities=15% Similarity=0.149 Sum_probs=79.5
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC---------------Cc----ccHHHHHHHHHHHHHcCCEEEe
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL---------------NT----VDEEIAKKAFHLLNKQGLNIIL 630 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l---------------~~----~d~~~~~~l~~~l~~~GV~i~~ 630 (866)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. ...++.+.+.+.+++.|++++.
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL 93 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence 3589999999999999999999999999999876531 11 1267778888888889999999
Q ss_pred CceEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 631 NTKIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 631 ~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
++.|+.+..+++ .+.+.+. +|. .+.+|.+|+|+|..+
T Consensus 94 ~~~v~~i~~~~~~~~~v~~~--~g~------~~~~~~li~AtG~~~ 131 (360)
T 3ab1_A 94 NETVTKYTKLDDGTFETRTN--TGN------VYRSRAVLIAAGLGA 131 (360)
T ss_dssp SCCEEEEEECTTSCEEEEET--TSC------EEEEEEEEECCTTCS
T ss_pred CCEEEEEEECCCceEEEEEC--CCc------EEEeeEEEEccCCCc
Confidence 999999988654 5555553 555 799999999999843
|
| >1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=5.1e-06 Score=75.16 Aligned_cols=70 Identities=19% Similarity=0.246 Sum_probs=54.0
Q ss_pred EecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeec---CCCEE---ecCC-EEEEEe
Q psy9583 6 VKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT---DGSIV---TSNQ-VIALID 78 (866)
Q Consensus 6 ~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~---~g~~v---~~g~-~l~~~~ 78 (866)
+..|.+|+ +...++ .++|++|++||++|+||++|+..+|.||.+|+|.+++.+ ..+.+ +-|+ -|+.+.
T Consensus 30 ~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~lvn~dpy~~gWl~~i~ 104 (128)
T 1onl_A 30 YAQDALGD-VVYVEL----PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPELVNQDPYGEGWIFRLK 104 (128)
T ss_dssp HHHHHHCS-EEEEEC----BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTHHHHCTTTTTCCEEEE
T ss_pred HHhhcCCC-ceEEEe----cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhhhccCCCCCccEEEEE
Confidence 34555655 333333 599999999999999999999999999999999999754 44445 5666 777777
Q ss_pred cC
Q psy9583 79 TD 80 (866)
Q Consensus 79 ~~ 80 (866)
..
T Consensus 105 ~~ 106 (128)
T 1onl_A 105 PR 106 (128)
T ss_dssp ES
T ss_pred EC
Confidence 54
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=4.2e-05 Score=86.75 Aligned_cols=105 Identities=19% Similarity=0.361 Sum_probs=80.9
Q ss_pred CeEEEECCcHHHHHHHHHHHh---cCCc---EEEEecCCcCCC-------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRR---LGSE---VTILEMSSNFLN------------------------------------- 607 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~---~g~~---Vtli~~~~~~l~------------------------------------- 607 (866)
++|+|||||+.|+.+|..|.+ .|.+ |+++++.+.+..
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 689999999999999999999 9999 999998764310
Q ss_pred cc---------------cHHHHHHHHHHHHHcCCE--EEeCceEEEEEEcCC--eEEEEEeeC-CCCccceeEEEeccEE
Q psy9583 608 TV---------------DEEIAKKAFHLLNKQGLN--IILNTKIHDIKINKE--NVLINYSNK-STNVKTEIITSIFDKL 667 (866)
Q Consensus 608 ~~---------------d~~~~~~l~~~l~~~GV~--i~~~~~v~~i~~~~~--~~~v~~~~~-~g~~~~~~~~~~~D~v 667 (866)
.+ ..++.+.+.+.+++.|++ +++++.|+++...++ .+.+++.+. +|. ..++.+|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~----~~~~~~d~V 158 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDT----IYSEEFDYV 158 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTE----EEEEEESEE
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCc----eEEEEcCEE
Confidence 00 145667777778888998 999999999987665 667776532 231 247899999
Q ss_pred EEeec--cccCCCC
Q psy9583 668 LIAIG--RIPNTNN 679 (866)
Q Consensus 668 i~a~G--~~p~~~~ 679 (866)
|+|+| ..|+...
T Consensus 159 VvAtG~~s~p~~p~ 172 (464)
T 2xve_A 159 VCCTGHFSTPYVPE 172 (464)
T ss_dssp EECCCSSSSBCCCC
T ss_pred EECCCCCCCCccCC
Confidence 99999 6776543
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-05 Score=94.52 Aligned_cols=33 Identities=39% Similarity=0.685 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+||+|||||++|++||..|++.|++|+|+|+.
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~ 368 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAK 368 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecc
Confidence 489999999999999999999999999999997
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2.3e-05 Score=91.06 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=32.6
Q ss_pred cccceeeecCCccHHHHHHHHHH---CCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQ---LGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~---~g~~V~liek~~ 423 (866)
..+||+|||||+||+++|..|++ .|.+|+|||+.+
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 46899999999999999999999 999999999963
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=97.96 E-value=3.7e-05 Score=82.03 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=77.0
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCC--cC---------C--C-cccHHHHHHHHHHHHHcCCEEEeCceEEEE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS--NF---------L--N-TVDEEIAKKAFHLLNKQGLNIILNTKIHDI 637 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~--~~---------l--~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i 637 (866)
+|+|||+|+.|+.+|..|++.|.+|+++++.. .+ . + ...+++...+.+.+++.|++++.+++++.+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 82 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccCEEEEE
Confidence 68999999999999999999999999996531 11 0 0 113577788888889999999999999999
Q ss_pred EEcC---CeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCC
Q psy9583 638 KINK---ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678 (866)
Q Consensus 638 ~~~~---~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~ 678 (866)
..+. +.+.+.+. +|. ++.+|.+|+|+|..|...
T Consensus 83 ~~~~~~~~~~~v~~~--~g~------~~~~~~lv~AtG~~~~~~ 118 (310)
T 1fl2_A 83 IPAAVEGGLHQIETA--SGA------VLKARSIIVATGAKWRNM 118 (310)
T ss_dssp ECCSSTTCCEEEEET--TSC------EEEEEEEEECCCEEECCC
T ss_pred EecccCCceEEEEEC--CCC------EEEeCEEEECcCCCcCCC
Confidence 7542 24555553 554 789999999999987654
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.4e-05 Score=89.09 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=32.4
Q ss_pred cccceeeecCCccHHHHHHHHHH------------CCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQ------------LGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~------------~g~~V~liek~~ 423 (866)
..+||+|||||+||+++|..|++ .|.+|+|||+.+
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~ 52 (526)
T 2pyx_A 6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPD 52 (526)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCC
Confidence 35899999999999999999999 899999999863
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=4.2e-05 Score=88.73 Aligned_cols=34 Identities=24% Similarity=0.479 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++||+||||||+|+++|..|++.|.+|+||||.+
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~ 59 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTD 59 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 5899999999999999999999999999999974
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=92.75 Aligned_cols=34 Identities=26% Similarity=0.441 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHH---H-CCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLA---Q-LGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~---~-~g~~V~liek~~ 423 (866)
.+||||||||+||++||+.|+ + .|.+|+||||..
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~ 59 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 59 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence 589999999999999999999 6 899999999974
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.1e-05 Score=80.97 Aligned_cols=100 Identities=17% Similarity=0.208 Sum_probs=77.7
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc-----------CCCcc-----cHHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN-----------FLNTV-----DEEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~-----------~l~~~-----d~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
.+++|||+|+.|+.+|..|++.|.+|+++++... ..+.+ ..++.+.+.+.+++.|++++. ..+
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~-~~v 87 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM-DEV 87 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE-CCE
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe-eeE
Confidence 5799999999999999999999999999998721 01111 356777888888999999997 688
Q ss_pred EEEEEc--CCe-EEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKIN--KEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~--~~~-~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.++..+ ++. +.+... +|. ++.+|.+|+|+|..|....
T Consensus 88 ~~i~~~~~~~~~~~v~~~--~g~------~~~~~~vv~AtG~~~~~~~ 127 (325)
T 2q7v_A 88 QGVQHDATSHPYPFTVRG--YNG------EYRAKAVILATGADPRKLG 127 (325)
T ss_dssp EEEEECTTSSSCCEEEEE--SSC------EEEEEEEEECCCEEECCCC
T ss_pred EEEEeccCCCceEEEEEC--CCC------EEEeCEEEECcCCCcCCCC
Confidence 888876 433 445443 554 7999999999999886543
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.93 E-value=5.9e-05 Score=82.63 Aligned_cols=98 Identities=27% Similarity=0.344 Sum_probs=76.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCC------c------CC-C-------c---------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSS------N------FL-N-------T--------------------- 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~------~------~l-~-------~--------------------- 608 (866)
.+|+|||||+.|+.+|..|++.|. +|+++++.+ . ++ + .
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 84 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEEH 84 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCSS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccccccC
Confidence 479999999999999999999999 999999875 0 00 0 0
Q ss_pred -ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 609 -VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 609 -~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
...++...+.+.+++.|++++.++.|+++..+++.+.+... ++ ++.+|.||+|+|..+..
T Consensus 85 ~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~--~g-------~~~~d~vVlAtG~~~~p 145 (369)
T 3d1c_A 85 ISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATT--TE-------TYHADYIFVATGDYNFP 145 (369)
T ss_dssp CBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEES--SC-------CEEEEEEEECCCSTTSB
T ss_pred CCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeC--CC-------EEEeCEEEECCCCCCcc
Confidence 01345666777788899999999999999887666666543 33 47899999999987653
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.7e-05 Score=89.66 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=30.4
Q ss_pred cceeeecCCccHHHHHHHHHH---CCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQ---LGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~---~g~~V~liek~ 422 (866)
+||+|||||++|+++|..|++ .|.+|+|||+.
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~ 37 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESG 37 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC-
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 899999999999999999999 99999999996
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=4.2e-05 Score=86.36 Aligned_cols=106 Identities=24% Similarity=0.265 Sum_probs=79.8
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCCcCCC-----c----------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNFLN-----T---------------------------------- 608 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~~~l~-----~---------------------------------- 608 (866)
..+|+|||||+.|+.+|..|++.|. +|+++++.+.+.. .
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 85 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence 4689999999999999999999999 9999998753310 0
Q ss_pred ---------------------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeC-CCCccceeE
Q psy9583 609 ---------------------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNK-STNVKTEII 660 (866)
Q Consensus 609 ---------------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~-~g~~~~~~~ 660 (866)
...++.+.+.+..++.+..++++++|++++..++.+.+++.+. +|.. ..
T Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~---~~ 162 (447)
T 2gv8_A 86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSP---IS 162 (447)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCC---EE
T ss_pred hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCe---eE
Confidence 0124556666666666788999999999998877777777641 1210 13
Q ss_pred EEeccEEEEeecc--ccCCC
Q psy9583 661 TSIFDKLLIAIGR--IPNTN 678 (866)
Q Consensus 661 ~~~~D~vi~a~G~--~p~~~ 678 (866)
++.+|.||+|+|. .|+..
T Consensus 163 ~~~~d~VVvAtG~~s~p~~p 182 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYIP 182 (447)
T ss_dssp EEEESEEEECCCSSSSBCBC
T ss_pred EEEeCEEEECCCCCCCCCCC
Confidence 6899999999998 66654
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.8e-05 Score=91.03 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=70.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..+++.|.+|+|+++. ..+.+ .
T Consensus 224 ~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~------~~L~~------------------------------------~ 261 (542)
T 4b1b_A 224 GKTLVVGASYVALECSGFLNSLGYDVTVAVRS------IVLRG------------------------------------F 261 (542)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEEESS------CSSTT------------------------------------S
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCeEEEeccc------ccccc------------------------------------c
Confidence 67999999999999999999999999999875 11110 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
+.+. ...+...+++.|++++.+..+.. .......+.+...++..+.+|.|++|+|-+|+.
T Consensus 262 D~ei--------------~~~l~~~l~~~gi~~~~~~~v~~--~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt 321 (542)
T 4b1b_A 262 DQQC--------------AVKVKLYMEEQGVMFKNGILPKK--LTKMDDKILVEFSDKTSELYDTVLYAIGRKGDI 321 (542)
T ss_dssp CHHH--------------HHHHHHHHHHTTCEEEETCCEEE--EEEETTEEEEEETTSCEEEESEEEECSCEEESC
T ss_pred chhH--------------HHHHHHHHHhhcceeecceEEEE--EEecCCeEEEEEcCCCeEEEEEEEEcccccCCc
Confidence 0011 11234467888999998876552 112335666666667788999999999998873
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=3.4e-05 Score=87.31 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=68.8
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||++|+.+|..|++.|.+|+++|+.+ .+. |. .
T Consensus 168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~------~~l---------~~---------------------~----- 206 (455)
T 2yqu_A 168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMD------RIL---------PT---------------------M----- 206 (455)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSC---------TT---------------------S-----
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCC------ccc---------cc---------------------c-----
Confidence 679999999999999999999999999999862 210 10 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..+ +...+...+++.||+++.+..+. ++. ..+.+.+...++.++.+|.||+|+|.+|..
T Consensus 207 ~~~--------------~~~~l~~~l~~~Gv~i~~~~~V~~i~~---~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~ 266 (455)
T 2yqu_A 207 DLE--------------VSRAAERVFKKQGLTIRTGVRVTAVVP---EAKGARVELEGGEVLEADRVLVAVGRRPYT 266 (455)
T ss_dssp CHH--------------HHHHHHHHHHHHTCEEECSCCEEEEEE---ETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred CHH--------------HHHHHHHHHHHCCCEEEECCEEEEEEE---eCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence 000 01112344666799999886655 322 223466655567789999999999998874
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.90 E-value=4.6e-05 Score=81.29 Aligned_cols=99 Identities=18% Similarity=0.221 Sum_probs=77.1
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEE-EecCCcC------------CCcc-----cHHHHHHHHHHHHHcCCEEEeC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTI-LEMSSNF------------LNTV-----DEEIAKKAFHLLNKQGLNIILN 631 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtl-i~~~~~~------------l~~~-----d~~~~~~l~~~l~~~GV~i~~~ 631 (866)
..+|+|||||+.|+.+|..|++.|.+|++ +++. .+ .+.+ ..++...+.+.+++.|++++.+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 82 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMV 82 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEECC
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEEE
Confidence 35899999999999999999999999999 8873 21 1222 2678888889999999999988
Q ss_pred ceEEEEEEcC--CeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 632 TKIHDIKINK--ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 632 ~~v~~i~~~~--~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.+.++ .++ +.+.+.+. .+ . ++.+|.+++|+|.+|+...
T Consensus 83 -~v~~i-~~~~~~~~~v~~~--~~-----~-~~~~d~lvlAtG~~~~~~~ 122 (315)
T 3r9u_A 83 -GVEQI-LKNSDGSFTIKLE--GG-----K-TELAKAVIVCTGSAPKKAG 122 (315)
T ss_dssp -CEEEE-EECTTSCEEEEET--TS-----C-EEEEEEEEECCCEEECCCC
T ss_pred -EEEEE-ecCCCCcEEEEEe--cC-----C-EEEeCEEEEeeCCCCCCCC
Confidence 88888 555 55554343 22 1 6889999999999887654
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=5.7e-05 Score=83.22 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=77.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-----------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT----------------------------------------- 608 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 608 (866)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.....
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 468999999999999999999999999999987654210
Q ss_pred ---c-----------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 609 ---V-----------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 609 ---~-----------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
+ ...+...+.+.+.+.|++++++++|++++. + + .+++. +|. ++.+|.||.|+|..
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~-~v~~~--~g~------~~~ad~vV~AdG~~ 159 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V-G-RLTLQ--TGE------VLEADLIVGADGVG 159 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T-T-EEEET--TSC------EEECSEEEECCCTT
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C-EEEEC--CCC------EEEcCEEEECCCcc
Confidence 0 044567777888889999999999999987 3 3 55553 565 79999999999987
Q ss_pred cCC
Q psy9583 675 PNT 677 (866)
Q Consensus 675 p~~ 677 (866)
+..
T Consensus 160 s~v 162 (379)
T 3alj_A 160 SKV 162 (379)
T ss_dssp CHH
T ss_pred HHH
Confidence 654
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=4.5e-05 Score=88.17 Aligned_cols=101 Identities=22% Similarity=0.298 Sum_probs=80.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------------------c----------------ccHHH
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------------------T----------------VDEEI 613 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------------------~----------------~d~~~ 613 (866)
.+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. . -.+++
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei 101 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI 101 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence 5799999999999999999999999999999654320 0 12567
Q ss_pred HHHHHHHHHHcCC--EEEeCceEEEEEEcCC--eEEEEEeeCCCCccceeEEEeccEEEEeec--cccCCCC
Q psy9583 614 AKKAFHLLNKQGL--NIILNTKIHDIKINKE--NVLINYSNKSTNVKTEIITSIFDKLLIAIG--RIPNTNN 679 (866)
Q Consensus 614 ~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~--~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G--~~p~~~~ 679 (866)
.+.+.+.+++.|+ .++++++|+++..+++ .+.+.+. +|. ++.+|.||+|+| .+|....
T Consensus 102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~--~G~------~i~ad~lV~AtG~~s~p~~p~ 165 (549)
T 4ap3_A 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTD--RGD------EVSARFLVVAAGPLSNANTPA 165 (549)
T ss_dssp HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEET--TCC------EEEEEEEEECCCSEEECCCCC
T ss_pred HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEEC--CCC------EEEeCEEEECcCCCCCCCCCC
Confidence 7888888889998 8999999999987665 5556553 665 799999999999 5666543
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=3.2e-05 Score=87.80 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=67.5
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+|+|+.+ .+... .
T Consensus 170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~------~~l~~------------------------------~----- 208 (464)
T 2eq6_A 170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMP------EILPQ------------------------------G----- 208 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSSTT------------------------------S-----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCC------ccccc------------------------------c-----
Confidence 679999999999999999999999999999862 21100 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcC-C--ce--EEEecEEEEecCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINK-T--KE--TITAKYIIIATGSKA 544 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~-~--g~--~i~~d~lViATGs~p 544 (866)
..+ +...+...+++.||+++.+..+. +.. ....+.+... + |+ ++.+|.||+|+|..|
T Consensus 209 ~~~--------------~~~~l~~~l~~~gV~i~~~~~v~~i~~---~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p 271 (464)
T 2eq6_A 209 DPE--------------TAALLRRALEKEGIRVRTKTKAVGYEK---KKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKP 271 (464)
T ss_dssp CHH--------------HHHHHHHHHHHTTCEEECSEEEEEEEE---ETTEEEEEEEETTCCSCEEEEESEEEECSCEEE
T ss_pred CHH--------------HHHHHHHHHHhcCCEEEcCCEEEEEEE---eCCEEEEEEeecCCCceeEEEcCEEEECCCccc
Confidence 000 01123445677899999987765 322 1233444332 3 54 899999999999988
Q ss_pred cC
Q psy9583 545 RS 546 (866)
Q Consensus 545 ~~ 546 (866)
..
T Consensus 272 ~~ 273 (464)
T 2eq6_A 272 RT 273 (464)
T ss_dssp SC
T ss_pred CC
Confidence 74
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.89 E-value=9.6e-05 Score=82.57 Aligned_cols=101 Identities=20% Similarity=0.175 Sum_probs=79.5
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC--------Cc----------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL--------NT---------------------------------- 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l--------~~---------------------------------- 608 (866)
.+|+|||||..|+-+|..|++.|.+|+++++.+... +.
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA 85 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence 479999999999999999999999999999864110 00
Q ss_pred -----------------c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEe
Q psy9583 609 -----------------V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIA 670 (866)
Q Consensus 609 -----------------~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a 670 (866)
+ ...+...+.+.+++.|++++.+++|+++..++++..+.+...+|. ..++.+|.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~----~~~~~a~~vV~A 161 (421)
T 3nix_A 86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGN----KREIEARFIIDA 161 (421)
T ss_dssp EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSC----EEEEEEEEEEEC
T ss_pred EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCC----EEEEEcCEEEEC
Confidence 0 124456667777778999999999999998877776667655664 346999999999
Q ss_pred ecccc
Q psy9583 671 IGRIP 675 (866)
Q Consensus 671 ~G~~p 675 (866)
+|..+
T Consensus 162 ~G~~s 166 (421)
T 3nix_A 162 SGYGR 166 (421)
T ss_dssp CGGGC
T ss_pred CCCch
Confidence 99875
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.1e-05 Score=90.15 Aligned_cols=102 Identities=15% Similarity=0.241 Sum_probs=76.3
Q ss_pred CeEEEECCcHHHHHHHHHHHh---cCCcEEEEecCCcCC--Cc---------ccHHHHHHHHHHHHHcCCEEEeCceEEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRR---LGSEVTILEMSSNFL--NT---------VDEEIAKKAFHLLNKQGLNIILNTKIHD 636 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~---~g~~Vtli~~~~~~l--~~---------~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 636 (866)
++|+|||||+.|+.+|..|++ .|.+|+++++++.+. +. ...++...+.+.+++.|++++.+ ++++
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~-~v~~ 80 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEG-TVEK 80 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEEC-EEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEe-eEEE
Confidence 579999999999999999999 899999999887542 10 12233445667777889999987 8988
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+..++.. +.+...++. ..++.+|.+|+|+|.+|+...
T Consensus 81 i~~~~~~--V~~~~g~~~----~~~~~~d~lViAtG~~~~~~~ 117 (409)
T 3h8l_A 81 IDAKSSM--VYYTKPDGS----MAEEEYDYVIVGIGAHLATEL 117 (409)
T ss_dssp EETTTTE--EEEECTTSC----EEEEECSEEEECCCCEECGGG
T ss_pred EeCCCCE--EEEccCCcc----cceeeCCEEEECCCCCcCccC
Confidence 8866554 444432222 346899999999999987653
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=5.9e-05 Score=87.75 Aligned_cols=34 Identities=29% Similarity=0.497 Sum_probs=32.5
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.++||+|||||++|+++|+.|+++|++|+|||+.
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~ 64 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQ 64 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4699999999999999999999999999999997
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=5.7e-05 Score=83.83 Aligned_cols=98 Identities=24% Similarity=0.335 Sum_probs=76.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-----------------c-------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-----------------T------------------------- 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-----------------~------------------------- 608 (866)
.+|+|||||+.|+.+|..+++.|.+|+++++.+.+.. .
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 3699999999999999999999999999998764310 0
Q ss_pred ----------------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEc----CCeEEEEEeeCCCCccceeEEE
Q psy9583 609 ----------------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKIN----KENVLINYSNKSTNVKTEIITS 662 (866)
Q Consensus 609 ----------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~----~~~~~v~~~~~~g~~~~~~~~~ 662 (866)
...++.+.+.+.+++.|+++++++.++++..+ ++.+.+.. .++ ++
T Consensus 85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~--~~g-------~i 155 (401)
T 2gqf_A 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV--NST-------QW 155 (401)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE--TTE-------EE
T ss_pred HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEE--CCC-------EE
Confidence 12345567778888899999999999999876 45555443 232 68
Q ss_pred eccEEEEeeccccCC
Q psy9583 663 IFDKLLIAIGRIPNT 677 (866)
Q Consensus 663 ~~D~vi~a~G~~p~~ 677 (866)
.+|.||+|+|..+..
T Consensus 156 ~ad~VVlAtG~~s~p 170 (401)
T 2gqf_A 156 QCKNLIVATGGLSMP 170 (401)
T ss_dssp EESEEEECCCCSSCG
T ss_pred ECCEEEECCCCccCC
Confidence 999999999988753
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=4.1e-05 Score=82.63 Aligned_cols=99 Identities=16% Similarity=0.257 Sum_probs=77.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEec----CCcC------------CCc-----ccHHHHHHHHHHHHHcCCEEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEM----SSNF------------LNT-----VDEEIAKKAFHLLNKQGLNII 629 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~----~~~~------------l~~-----~d~~~~~~l~~~l~~~GV~i~ 629 (866)
.+|+|||+|+.|+.+|..|++.|.+|+++++ ...+ .+. ...++...+.+.+++.|++++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 88 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF 88 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence 5799999999999999999999999999998 2211 111 135677888888899999999
Q ss_pred eCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 630 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.++ +..+..+++.+.+.+ ++. ++.+|.+|+|+|..|....
T Consensus 89 ~~~-v~~i~~~~~~~~v~~---~~~------~~~~~~vv~A~G~~~~~~~ 128 (333)
T 1vdc_A 89 TET-VTKVDFSSKPFKLFT---DSK------AILADAVILAIGAVAKRLS 128 (333)
T ss_dssp CCC-CCEEECSSSSEEEEC---SSE------EEEEEEEEECCCEEECCCC
T ss_pred EeE-EEEEEEcCCEEEEEE---CCc------EEEcCEEEECCCCCcCCCC
Confidence 987 888887666655544 443 7899999999999876543
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.6e-05 Score=89.65 Aligned_cols=98 Identities=26% Similarity=0.396 Sum_probs=75.7
Q ss_pred CeEEEECCcHHHHHHHHHHHh---cCCcEEEEecCCcCC--Cc---------ccHHHHHHHHHHHHHcCCEEEeCceEEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRR---LGSEVTILEMSSNFL--NT---------VDEEIAKKAFHLLNKQGLNIILNTKIHD 636 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~---~g~~Vtli~~~~~~l--~~---------~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 636 (866)
++|+|||||+.|+.+|..|++ .|.+|+++++.+.+. +. ...++...+.+.+++.||+++ ...++.
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~-~~~v~~ 83 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFI-AQSAEQ 83 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEE-CSCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEE-EeEEEE
Confidence 689999999999999999999 799999999988652 11 123344445677888999998 468999
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+..++. .+.+. ++. ++.+|.+|+|+|.+|+...
T Consensus 84 id~~~~--~V~~~--~g~------~i~~d~lviAtG~~~~~~~ 116 (437)
T 3sx6_A 84 IDAEAQ--NITLA--DGN------TVHYDYLMIATGPKLAFEN 116 (437)
T ss_dssp EETTTT--EEEET--TSC------EEECSEEEECCCCEECGGG
T ss_pred EEcCCC--EEEEC--CCC------EEECCEEEECCCCCcCccc
Confidence 886654 33343 555 7999999999999987643
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.6e-05 Score=86.12 Aligned_cols=100 Identities=23% Similarity=0.333 Sum_probs=76.6
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC---CcccH---------HHHHHHHHHHHHcCCEEEeCceEEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL---NTVDE---------EIAKKAFHLLNKQGLNIILNTKIHDI 637 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l---~~~d~---------~~~~~l~~~l~~~GV~i~~~~~v~~i 637 (866)
..+|+|||||+.|+.+|..|...+.+|+++++.+.+. +.+.. ++.....+.+++.|++++++++|+++
T Consensus 9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~i 88 (385)
T 3klj_A 9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATSI 88 (385)
T ss_dssp BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEEE
T ss_pred CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEEE
Confidence 3579999999999999999988889999999987642 12211 11122356678899999999999999
Q ss_pred EEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 638 KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 638 ~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..++.. +++ .+|. ++.+|.+|+|||.+|....
T Consensus 89 d~~~~~--v~~--~~g~------~~~yd~lvlAtG~~p~~p~ 120 (385)
T 3klj_A 89 DPNNKL--VTL--KSGE------KIKYEKLIIASGSIANKIK 120 (385)
T ss_dssp ETTTTE--EEE--TTSC------EEECSEEEECCCEEECCCC
T ss_pred ECCCCE--EEE--CCCC------EEECCEEEEecCCCcCCCC
Confidence 876653 334 3665 8999999999999987654
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=7.8e-05 Score=79.81 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=77.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc-----------CCCc-----ccHHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN-----------FLNT-----VDEEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~-----------~l~~-----~d~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
.+|+|||+|+.|+.+|..|++.|.+|+++++... ..+. ..+++.+.+.+.+++.|++++.++ +
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v 84 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDH-I 84 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECCC-E
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEee-e
Confidence 5799999999999999999999999999986320 0111 235777888888999999999886 8
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..+..+++.+.+ .. ++. .+.+|.+++|+|.+|....
T Consensus 85 ~~i~~~~~~~~v-~~--~~~------~~~~~~lv~AtG~~~~~~~ 120 (320)
T 1trb_A 85 NKVDLQNRPFRL-NG--DNG------EYTCDALIIATGASARYLG 120 (320)
T ss_dssp EEEECSSSSEEE-EE--SSC------EEEEEEEEECCCEEECCCC
T ss_pred eEEEecCCEEEE-Ee--CCC------EEEcCEEEECCCCCcCCCC
Confidence 888876666665 33 454 7899999999999886643
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.87 E-value=9.3e-05 Score=79.28 Aligned_cols=100 Identities=20% Similarity=0.157 Sum_probs=78.1
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc-----------CCCc----ccHHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN-----------FLNT----VDEEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~-----------~l~~----~d~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
..+|+|||+|+.|+.+|..|++.|.+|+++++... ..+. ...++...+.+.+++.|++++. ..+
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~v 94 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG-VEV 94 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET-CCE
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE-eeE
Confidence 35799999999999999999999999999998421 0111 1356777788888889999988 789
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..+..+++.+.+.. ++. ++.+|.+|+|+|..|....
T Consensus 95 ~~i~~~~~~~~v~~---~~~------~~~~~~li~AtG~~~~~~~ 130 (319)
T 3cty_A 95 RSIKKTQGGFDIET---NDD------TYHAKYVIITTGTTHKHLG 130 (319)
T ss_dssp EEEEEETTEEEEEE---SSS------EEEEEEEEECCCEEECCCC
T ss_pred EEEEEeCCEEEEEE---CCC------EEEeCEEEECCCCCcccCC
Confidence 99887766665544 344 7899999999999876543
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=8.3e-05 Score=85.79 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=79.8
Q ss_pred CeEEEECCcHHHHHHHHHHH-hcCCcEEEEecCCcCCC--------c-----------------------------ccHH
Q psy9583 571 KKLCIIGAGVIGLEIGSIWR-RLGSEVTILEMSSNFLN--------T-----------------------------VDEE 612 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~-~~g~~Vtli~~~~~~l~--------~-----------------------------~d~~ 612 (866)
.+|+|||||+.|+.+|..|+ +.|.+|+++++.+.+.. . ..++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 47999999999999999999 99999999999764320 0 1346
Q ss_pred HHHHHHHHHHHcCC--EEEeCceEEEEEEcCC--eEEEEEeeCCCCccceeEEEeccEEEEeecc--ccCCC
Q psy9583 613 IAKKAFHLLNKQGL--NIILNTKIHDIKINKE--NVLINYSNKSTNVKTEIITSIFDKLLIAIGR--IPNTN 678 (866)
Q Consensus 613 ~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~--~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~--~p~~~ 678 (866)
+.+.+.+.+++.|+ .++++++|+++..+++ .+.+.+. +|. ++.+|.||+|+|. +|...
T Consensus 89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~--~G~------~i~ad~lV~AtG~~s~p~~p 152 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTD--HGE------VYRAKYVVNAVGLLSAINFP 152 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEET--TSC------EEEEEEEEECCCSCCSBCCC
T ss_pred HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEc--CCC------EEEeCEEEECCcccccCCCC
Confidence 77788888888998 8999999999987765 5566554 665 7899999999994 55543
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=6e-05 Score=89.02 Aligned_cols=35 Identities=26% Similarity=0.589 Sum_probs=32.7
Q ss_pred cccceeeecCCccHHHHHHHHHH-CCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~-~g~~V~liek~~ 423 (866)
.++||+||||||+|+++|..|++ .|.+|+||||.+
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~ 66 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKE 66 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 45899999999999999999999 999999999974
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=7.6e-06 Score=94.23 Aligned_cols=41 Identities=41% Similarity=0.517 Sum_probs=37.7
Q ss_pred ccceeeecCCccHHHHHHHHHH-CCCeEEEEeccCCCcccccCCCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~-~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
++||+|||||++||+||.+|++ .|++|+|+|++ +.+||.|.
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~------~~~GG~~~ 51 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSN------ETPGGLAS 51 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESS------SSCCGGGC
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECC------CCCcCCee
Confidence 4899999999999999999987 49999999998 78999874
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.81 E-value=2.9e-05 Score=87.90 Aligned_cols=102 Identities=18% Similarity=0.294 Sum_probs=76.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCC--C-cc----c------HHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFL--N-TV----D------EEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l--~-~~----d------~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
++|+|||||+.|+.+|..|++. |.+|+++++.+.+. + .+ . .++.....+.+++.|++++++++|+
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V~ 82 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREVV 82 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEECSCEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 5899999999999999999998 89999999988653 1 11 0 1111113467788999999999999
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
++..+...+.+... .+ ...+.+|.+++|+|.+|....
T Consensus 83 ~id~~~~~v~v~~~-~~------~~~~~~d~lviAtG~~p~~p~ 119 (452)
T 3oc4_A 83 AMDVENQLIAWTRK-EE------QQWYSYDKLILATGASQFSTQ 119 (452)
T ss_dssp EEETTTTEEEEEET-TE------EEEEECSEEEECCCCCBCCCC
T ss_pred EEECCCCEEEEEec-Cc------eEEEEcCEEEECCCcccCCCC
Confidence 99887776666521 12 348999999999999987653
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.81 E-value=6.4e-05 Score=83.46 Aligned_cols=98 Identities=13% Similarity=0.206 Sum_probs=77.5
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-------------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN------------------------------------------- 607 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------- 607 (866)
.+|+|||||+.|+.+|..|++.|.+|+++++.+....
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 4799999999999999999999999999998754300
Q ss_pred --cc---------------cHHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeE--EEEEeeCCCCccceeEEEeccEE
Q psy9583 608 --TV---------------DEEIAKKAFHLLNKQ-GLNIILNTKIHDIKINKENV--LINYSNKSTNVKTEIITSIFDKL 667 (866)
Q Consensus 608 --~~---------------d~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~--~v~~~~~~g~~~~~~~~~~~D~v 667 (866)
.+ ...+.+.+.+.+++. |++++++++|++++.+++++ .+++. +|. ++.+|.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~--~g~------~~~ad~v 158 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLN--DGR------VLRPRVV 158 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEET--TSC------EEEEEEE
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEEC--CCC------EEECCEE
Confidence 00 124456666677776 99999999999999887776 66654 665 7899999
Q ss_pred EEeeccccC
Q psy9583 668 LIAIGRIPN 676 (866)
Q Consensus 668 i~a~G~~p~ 676 (866)
|.|.|..+.
T Consensus 159 V~AdG~~s~ 167 (399)
T 2x3n_A 159 VGADGIASY 167 (399)
T ss_dssp EECCCTTCH
T ss_pred EECCCCChH
Confidence 999998764
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.3e-05 Score=88.97 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=41.4
Q ss_pred cccccceeeecCCccHHHHHHHHHHC-CCeEEEEeccCCCcccccCCCcccee
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWKDNEENFALGGTCTNV 438 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~-g~~V~liek~~~~~~~~~~GG~~~~~ 438 (866)
|+.++||+|||||++|++||..|++. |++|+|+|++ +.+||.|...
T Consensus 4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~------~~~GG~~~~~ 50 (399)
T 1v0j_A 4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERR------PHIGGNAYSE 50 (399)
T ss_dssp CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSS------SSSSGGGCEE
T ss_pred ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCC------CCCCCeeeec
Confidence 55569999999999999999999999 9999999998 7899988654
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=2.9e-05 Score=88.02 Aligned_cols=96 Identities=19% Similarity=0.260 Sum_probs=67.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||++|+.+|..|++.|.+|+|+++.+ .+... .
T Consensus 172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~------~~l~~------~----------------------------- 210 (458)
T 1lvl_A 172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE------RILPT------Y----------------------------- 210 (458)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS------SSSTT------S-----------------------------
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCC------ccccc------c-----------------------------
Confidence 679999999999999999999999999999862 22100 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~ 546 (866)
..++ ...+...+++.||+++.+..+. ++. .. +.+...+| .++.+|.||+|+|.+|..
T Consensus 211 ~~~~--------------~~~l~~~l~~~gv~i~~~~~v~~i~~----~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~ 270 (458)
T 1lvl_A 211 DSEL--------------TAPVAESLKKLGIALHLGHSVEGYEN----GC-LLANDGKGGQLRLEADRVLVAVGRRPRT 270 (458)
T ss_dssp CHHH--------------HHHHHHHHHHHTCEEETTCEEEEEET----TE-EEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred CHHH--------------HHHHHHHHHHCCCEEEECCEEEEEEe----CC-EEEEECCCceEEEECCEEEECcCCCcCC
Confidence 0000 1112334667799999887665 322 12 55554344 689999999999998874
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.4e-05 Score=90.42 Aligned_cols=45 Identities=31% Similarity=0.425 Sum_probs=40.5
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
|...+||+|||||++|++||..|++.|++|+|+|++ +.+||.|..
T Consensus 8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~------~~~GG~~~t 52 (453)
T 2bcg_G 8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQ------DHYGGEAAS 52 (453)
T ss_dssp CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCGGGCE
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC------CCCCccccc
Confidence 445699999999999999999999999999999998 789998754
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=7.4e-05 Score=86.30 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=78.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-------------------------------------cccHHH
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-------------------------------------TVDEEI 613 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-------------------------------------~~d~~~ 613 (866)
.+|+|||||+.|+.+|..|.+.|.+|+++++++.+.. .-.+++
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei 89 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM 89 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence 4799999999999999999999999999999864310 113677
Q ss_pred HHHHHHHHHHcCC--EEEeCceEEEEEEcCC--eEEEEEeeCCCCccceeEEEeccEEEEeec--cccCCCC
Q psy9583 614 AKKAFHLLNKQGL--NIILNTKIHDIKINKE--NVLINYSNKSTNVKTEIITSIFDKLLIAIG--RIPNTNN 679 (866)
Q Consensus 614 ~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~--~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G--~~p~~~~ 679 (866)
...+.+..++.|+ .++++++|+++..+++ .+.+.+. +|. ++.+|.||+|+| .+|+...
T Consensus 90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~--~G~------~~~ad~lV~AtG~~s~p~~p~ 153 (545)
T 3uox_A 90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLD--NEE------VVTCRFLISATGPLSASRMPD 153 (545)
T ss_dssp HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEET--TTE------EEEEEEEEECCCSCBC---CC
T ss_pred HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEEC--CCC------EEEeCEEEECcCCCCCCcCCC
Confidence 7888888888888 7999999999986544 4555554 664 789999999999 5666543
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=8.1e-05 Score=82.19 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=69.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||+|+.|+.+|..|++.|.+|+++|+.+ .+.... .+
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~------~~~~~~-----~~--------------------------- 186 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCE------QVMPGL-----LH--------------------------- 186 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS------SSSTTT-----SC---------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCc------chhhcc-----cC---------------------------
Confidence 4789999999999999999999999999999862 211100 00
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
. .+...+...+++.|++++.+..+. +.. ....+.+...+|+++.+|.||+|+|..|..
T Consensus 187 --~--------------~~~~~l~~~l~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~ 245 (384)
T 2v3a_A 187 --P--------------AAAKAVQAGLEGLGVRFHLGPVLASLKK---AGEGLEAHLSDGEVIPCDLVVSAVGLRPRT 245 (384)
T ss_dssp --H--------------HHHHHHHHHHHTTTCEEEESCCEEEEEE---ETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred --H--------------HHHHHHHHHHHHcCCEEEeCCEEEEEEe---cCCEEEEEECCCCEEECCEEEECcCCCcCH
Confidence 0 001123445677899999887554 322 223455655677889999999999988763
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=97.74 E-value=1.1e-05 Score=92.67 Aligned_cols=58 Identities=7% Similarity=0.222 Sum_probs=46.4
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
...+.+.+.+.+++.|++|+++++|++|..+++++. |++ .+|+ ++.+|.||.+++...
T Consensus 220 ~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~--~~g~------~~~ad~VV~~a~~~~ 278 (501)
T 4dgk_A 220 TGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHL--EDGR------RFLTQAVASNADVVH 278 (501)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE--TTSC------EEECSCEEECCC---
T ss_pred CcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEe--cCCc------EEEcCEEEECCCHHH
Confidence 356788889999999999999999999998887765 444 3776 899999999887543
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00014 Score=83.81 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=79.0
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC--cCC------------CcccHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS--NFL------------NTVDEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~--~~l------------~~~d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
..+|+|||||+.|+.+|..+++.|.+|+++++.. .+. ....+++...+.+.+++.|++++.+++++
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~~~~v~ 291 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVIDSQSAS 291 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEECSCCEE
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 4579999999999999999999999999997531 111 01245778888888999999999999999
Q ss_pred EEEEcC---CeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCC
Q psy9583 636 DIKINK---ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678 (866)
Q Consensus 636 ~i~~~~---~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~ 678 (866)
.+..+. +.+.+.+. +|. .+.+|.+|+|+|.+|...
T Consensus 292 ~i~~~~~~~~~~~V~~~--~g~------~~~~d~vVlAtG~~~~~~ 329 (521)
T 1hyu_A 292 KLVPAATEGGLHQIETA--SGA------VLKARSIIIATGAKWRNM 329 (521)
T ss_dssp EEECCSSTTSCEEEEET--TSC------EEEEEEEEECCCEEECCC
T ss_pred EEEeccCCCceEEEEEC--CCC------EEEcCEEEECCCCCcCCC
Confidence 997542 24555553 565 789999999999887653
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00014 Score=78.62 Aligned_cols=100 Identities=12% Similarity=0.138 Sum_probs=76.6
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc-----------CCCcc-----cHHHHHHHHHHHHHcCCEEEeCce
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN-----------FLNTV-----DEEIAKKAFHLLNKQGLNIILNTK 633 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~-----------~l~~~-----d~~~~~~l~~~l~~~GV~i~~~~~ 633 (866)
..+++|||+|+.|+.+|..|.+.|.+|+++++... ..+.+ .+++...+.+.+++.|++++.++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~- 92 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMED- 92 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEECCC-
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEEee-
Confidence 46899999999999999999999999999985311 01111 35677788888889999999987
Q ss_pred EEEEEEcCCeEEE-EEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 634 IHDIKINKENVLI-NYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 634 v~~i~~~~~~~~v-~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+.++.. .+.+.+ .+ .++. ++.+|.+|+|+|..|....
T Consensus 93 v~~i~~-~~~~~v~~~--~~g~------~~~~d~lviAtG~~~~~~~ 130 (335)
T 2a87_A 93 VESVSL-HGPLKSVVT--ADGQ------THRARAVILAMGAAARYLQ 130 (335)
T ss_dssp EEEEEC-SSSSEEEEE--TTSC------EEEEEEEEECCCEEECCCC
T ss_pred EEEEEe-CCcEEEEEe--CCCC------EEEeCEEEECCCCCccCCC
Confidence 888876 334444 33 3554 7999999999999886543
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=97.72 E-value=9.5e-05 Score=82.02 Aligned_cols=99 Identities=17% Similarity=0.250 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc------ccHHHHH----------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------VDEEIAK---------------------------- 615 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------~d~~~~~---------------------------- 615 (866)
..+|+|||||+.|+.+|..|++.|.+|+++++.+..... +.+...+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 468999999999999999999999999999987764211 2222211
Q ss_pred ---------------HHHHHHHH--cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 616 ---------------KAFHLLNK--QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 616 ---------------~l~~~l~~--~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.+.+.|.+ .|++++++++|++++.+++++.+++. +|. ++.+|.||.|.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g~------~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFS--DGT------KAEANWVIGADGGASV 154 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEET--TSC------EEEESEEEECCCTTCH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEEC--CCC------EEECCEEEECCCcchh
Confidence 12222322 38899999999999988888777664 565 7999999999998754
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00014 Score=82.33 Aligned_cols=104 Identities=12% Similarity=0.100 Sum_probs=76.8
Q ss_pred eEEEECCcHHHHHHHHHHHhcC-----CcEEEEecCCcCCC---------c-----------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLG-----SEVTILEMSSNFLN---------T----------------------------- 608 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g-----~~Vtli~~~~~~l~---------~----------------------------- 608 (866)
+|+|||+|+.|+.+|..|++.| .+|+++++.+.+.- .
T Consensus 32 dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~~ 111 (463)
T 3s5w_A 32 DLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKHD 111 (463)
T ss_dssp SEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHTT
T ss_pred CEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhcC
Confidence 7999999999999999999999 89999998874210 0
Q ss_pred -------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEc---CCe--EEEEEeeCCCCccceeEEEeccEEEEe
Q psy9583 609 -------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKIN---KEN--VLINYSNKSTNVKTEIITSIFDKLLIA 670 (866)
Q Consensus 609 -------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~---~~~--~~v~~~~~~g~~~~~~~~~~~D~vi~a 670 (866)
...++.+++....++.+++++++++|++++.+ ++. +.+...+.+|. ..++.+|.||+|
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~----~~~~~~d~lVlA 187 (463)
T 3s5w_A 112 RLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGE----ELVRTTRALVVS 187 (463)
T ss_dssp CHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSC----EEEEEESEEEEC
T ss_pred ceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCc----eEEEEeCEEEEC
Confidence 02344555556666678999999999999876 333 24554433332 347899999999
Q ss_pred eccccCCCC
Q psy9583 671 IGRIPNTNN 679 (866)
Q Consensus 671 ~G~~p~~~~ 679 (866)
+|..|..+.
T Consensus 188 tG~~p~~p~ 196 (463)
T 3s5w_A 188 PGGTPRIPQ 196 (463)
T ss_dssp CCCEECCCG
T ss_pred CCCCCCCcc
Confidence 999887543
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=97.72 E-value=1.7e-05 Score=91.62 Aligned_cols=45 Identities=27% Similarity=0.476 Sum_probs=38.9
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
|..++||+|||||+||++||..|++.|++|+|+|++ +.+||.|..
T Consensus 1 m~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~------~~~GGr~~t 45 (520)
T 1s3e_A 1 MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEAR------DRVGGRTYT 45 (520)
T ss_dssp --CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSS------SSSBTTCCE
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCC------CCCCCceee
Confidence 344689999999999999999999999999999998 688887643
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0002 Score=80.77 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=76.2
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-------------------c-----------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-------------------T----------------------- 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-------------------~----------------------- 608 (866)
.+|+|||||..|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED 106 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence 4799999999999999999999999999998764310 0
Q ss_pred --------------------c-----cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCe-EEEEEeeCCCCccceeEEE
Q psy9583 609 --------------------V-----DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITS 662 (866)
Q Consensus 609 --------------------~-----d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~ 662 (866)
+ ...+.+.+.+.+++.||+++++++|+++..+++. +.+.+. +|. .+
T Consensus 107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~--~G~------~i 178 (447)
T 2i0z_A 107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQ--TGE------VL 178 (447)
T ss_dssp HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET--TCC------EE
T ss_pred HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEEC--CCC------EE
Confidence 0 1344556677788899999999999999876665 445443 554 68
Q ss_pred eccEEEEeecccc
Q psy9583 663 IFDKLLIAIGRIP 675 (866)
Q Consensus 663 ~~D~vi~a~G~~p 675 (866)
.+|.||+|+|..+
T Consensus 179 ~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 179 ETNHVVIAVGGKS 191 (447)
T ss_dssp ECSCEEECCCCSS
T ss_pred ECCEEEECCCCCc
Confidence 9999999999876
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=4.9e-05 Score=83.33 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=73.1
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---cc--------c-HHHHHHHHHHHHHcCCEEEeCceEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---TV--------D-EEIAKKAFHLLNKQGLNIILNTKIHD 636 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---~~--------d-~~~~~~l~~~l~~~GV~i~~~~~v~~ 636 (866)
.+.+++|||||+.|+.+|..|++.| +|+++++.+.... .+ + .++.....+.+++.|++++.++.++.
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~ 85 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL 85 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence 3678999999999999999999999 9999998875321 11 1 11112234567788999999999998
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+..+... +. . ++. ++.+|.+|+|||.+|+...
T Consensus 86 id~~~~~--V~-~--~g~------~~~~d~lViATGs~p~~p~ 117 (367)
T 1xhc_A 86 IDRGRKV--VI-T--EKG------EVPYDTLVLATGARAREPQ 117 (367)
T ss_dssp EETTTTE--EE-E--SSC------EEECSEEEECCCEEECCCC
T ss_pred EECCCCE--EE-E--CCc------EEECCEEEECCCCCCCCCC
Confidence 8765432 33 2 454 7999999999999987654
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=8.7e-05 Score=83.30 Aligned_cols=100 Identities=16% Similarity=0.314 Sum_probs=74.3
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCCcCCC---cccH----------HHHHHHHHHHHHcCCEEEeCceE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNFLN---TVDE----------EIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~~~l~---~~d~----------~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
..+++|||||+.|+.+|..|++.|. +|+++++.+.+.- .+.. .+.....+.+++.|++++.++.|
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 83 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV 83 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCCEE
Confidence 4689999999999999999999998 7999998765320 1111 11111245677889999999999
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+.+..++.. +.+. +|. ++.+|.+|+|+|.+|+...
T Consensus 84 ~~i~~~~~~--v~~~--~g~------~~~~d~lviAtG~~p~~~~ 118 (431)
T 1q1r_A 84 TAINRDRQQ--VILS--DGR------ALDYDRLVLATGGRPRPLP 118 (431)
T ss_dssp EEEETTTTE--EEET--TSC------EEECSEEEECCCEEECCCG
T ss_pred EEEECCCCE--EEEC--CCC------EEECCEEEEcCCCCccCCC
Confidence 999865543 3443 555 7999999999999987654
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=81.31 Aligned_cols=99 Identities=16% Similarity=0.303 Sum_probs=74.5
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCc--EEEEecCCcCCC---cccHHHH---------HHHHHHHHHcCCEEEeCceEEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSE--VTILEMSSNFLN---TVDEEIA---------KKAFHLLNKQGLNIILNTKIHD 636 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~--Vtli~~~~~~l~---~~d~~~~---------~~l~~~l~~~GV~i~~~~~v~~ 636 (866)
++++|||+|+.|+.+|..|++.|.+ |+++++.+.+.- .+...+. ....+.+++.|++++.+++++.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 82 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTA 82 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEE
Confidence 5899999999999999999999987 999998876421 2222111 1123456788999999999999
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+...... +.+ .+|. ++.+|.+++|||.+|....
T Consensus 83 id~~~~~--v~~--~~g~------~~~~d~lvlAtG~~p~~~~ 115 (410)
T 3ef6_A 83 LDVQTRT--ISL--DDGT------TLSADAIVIATGSRARTMA 115 (410)
T ss_dssp EETTTTE--EEE--TTSC------EEECSEEEECCCEEECCCC
T ss_pred EECCCCE--EEE--CCCC------EEECCEEEEccCCcccCCC
Confidence 9866543 333 3565 7999999999999887653
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00027 Score=75.11 Aligned_cols=100 Identities=17% Similarity=0.231 Sum_probs=70.4
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc----------CCC---cccHHHHHHHHHHHHHcCCEEEeCceEEEEE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN----------FLN---TVDEEIAKKAFHLLNKQGLNIILNTKIHDIK 638 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~----------~l~---~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 638 (866)
.|+|||+|+.|+.+|..+++.|.+|+++++... +.. ...+++.+...+.+.+.+...+....+..+.
T Consensus 8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (304)
T 4fk1_A 8 DCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYEKTVVMIT 87 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEECCEEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEeeEEEEee
Confidence 589999999999999999999999999997532 111 1235666666666666654444455555555
Q ss_pred EcC-CeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 639 INK-ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 639 ~~~-~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..+ +...+... +|. ++.+|.+|+|||.+|....
T Consensus 88 ~~~~~~~~v~~~--~g~------~~~a~~liiATGs~p~~p~ 121 (304)
T 4fk1_A 88 KQSTGLFEIVTK--DHT------KYLAERVLLATGMQEEFPS 121 (304)
T ss_dssp ECTTSCEEEEET--TCC------EEEEEEEEECCCCEEECCS
T ss_pred ecCCCcEEEEEC--CCC------EEEeCEEEEccCCcccccc
Confidence 443 34455443 665 8999999999999887544
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00012 Score=82.95 Aligned_cols=99 Identities=16% Similarity=0.224 Sum_probs=67.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+++++.+ .+. |. .
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~------~~l---------~~---------------------~---- 209 (455)
T 1ebd_A 170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG------EIL---------SG---------------------F---- 209 (455)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS------SSS---------TT---------------------S----
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC------ccc---------cc---------------------c----
Confidence 3689999999999999999999999999999862 211 00 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc--C-CceEEEecEEEEecCCCCc
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN--K-TKETITAKYIIIATGSKAR 545 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~--~-~g~~i~~d~lViATGs~p~ 545 (866)
..+ +...+...+++.||+++.+..+. +.. ....+.+.. . ++.++.+|.||+|+|..|.
T Consensus 210 -~~~--------------~~~~l~~~l~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 210 -EKQ--------------MAAIIKKRLKKKGVEVVTNALAKGAEE---REDGVTVTYEANGETKTIDADYVLVTVGRRPN 271 (455)
T ss_dssp -CHH--------------HHHHHHHHHHHTTCEEEESEEEEEEEE---ETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred -CHH--------------HHHHHHHHHHHCCCEEEeCCEEEEEEE---eCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence 000 01113345677899999987765 322 112344432 2 3468999999999999886
Q ss_pred C
Q psy9583 546 S 546 (866)
Q Consensus 546 ~ 546 (866)
.
T Consensus 272 ~ 272 (455)
T 1ebd_A 272 T 272 (455)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0003 Score=79.49 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=79.4
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-----c-------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-----T------------------------------------- 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-----~------------------------------------- 608 (866)
-+|+|||||+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 4799999999999999999999999999998653200 0
Q ss_pred ----------c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeC-CCCccceeEEEeccEEEEeecccc
Q psy9583 609 ----------V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNK-STNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 609 ----------~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+ ...+.+.+.+.+.+.|++++++++|+++..+++.+. +.+... +|. ..++.+|.||.|+|..+
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~----~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNE----ELTVYSKVVVEATGYSR 162 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTE----EEEEECSEEEECCGGGC
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCc----eEEEEcCEEEECcCCch
Confidence 0 024566677777888999999999999988777654 555533 442 34789999999999876
Q ss_pred CC
Q psy9583 676 NT 677 (866)
Q Consensus 676 ~~ 677 (866)
..
T Consensus 163 ~v 164 (453)
T 3atr_A 163 SF 164 (453)
T ss_dssp TT
T ss_pred hh
Confidence 54
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.63 E-value=9.5e-05 Score=83.51 Aligned_cols=101 Identities=23% Similarity=0.346 Sum_probs=69.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCC------Ccc------cHHHHHHHHHHH-HHcCCEEEeCceE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFL------NTV------DEEIAKKAFHLL-NKQGLNIILNTKI 634 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l------~~~------d~~~~~~l~~~l-~~~GV~i~~~~~v 634 (866)
.++|+|||||+.|+.+|..|++. +.+|+++++.+.+. +.+ ..++.....+.+ ++.|+++++++++
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~~v 82 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNAEV 82 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEETTCEE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEecCEE
Confidence 36899999999999999999998 78999999987542 110 111222222334 6789999999999
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+.+..+ ...+.. .++ ...+.+|.+++|||.+|....
T Consensus 83 ~~i~~~--~~~v~~--~~g-----~~~~~~d~lviAtG~~p~~p~ 118 (449)
T 3kd9_A 83 IEVDTG--YVRVRE--NGG-----EKSYEWDYLVFANGASPQVPA 118 (449)
T ss_dssp EEECSS--EEEEEC--SSS-----EEEEECSEEEECCCEEECCCS
T ss_pred EEEecC--CCEEEE--CCc-----eEEEEcCEEEECCCCCCCCCC
Confidence 988543 333332 233 237899999999999887543
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.1e-05 Score=86.81 Aligned_cols=42 Identities=33% Similarity=0.628 Sum_probs=38.1
Q ss_pred cccceeeecCCccHHHHHHHHHHCC-CeEEEEeccCCCcccccCCCccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLG-FKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~~~~~~~~~GG~~~ 436 (866)
+++||+|||||++|++||..|++.| ++|+|+|+. +.+||.+.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~------~~~GG~~~ 47 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERT------DHVGGKCH 47 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSS------SCSSTTCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECC------CCCCCccc
Confidence 4589999999999999999999999 999999998 67888763
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0004 Score=76.46 Aligned_cols=100 Identities=13% Similarity=0.165 Sum_probs=76.1
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc------c------------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------V------------------------------------ 609 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------~------------------------------------ 609 (866)
.|+|||||+.|+-+|..|++.|.+|+++++.+.+... +
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII 85 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence 4899999999999999999999999999986543110 0
Q ss_pred ---------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 610 ---------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 610 ---------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
-..+...+.+...+.|++++.+++++.+..+++.+.......++. ..++.+|.||.|.|..
T Consensus 86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~----~~~~~a~~vIgAdG~~ 161 (397)
T 3oz2_A 86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNE----IVDVRAKMVIAADGFE 161 (397)
T ss_dssp EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTE----EEEEEEEEEEECCCTT
T ss_pred ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeeccccc----ceEEEEeEEEeCCccc
Confidence 023455666777788999999999999988877665443322333 4578999999999976
Q ss_pred c
Q psy9583 675 P 675 (866)
Q Consensus 675 p 675 (866)
.
T Consensus 162 S 162 (397)
T 3oz2_A 162 S 162 (397)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3e-05 Score=85.36 Aligned_cols=43 Identities=35% Similarity=0.562 Sum_probs=39.4
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
...+||+|||||++|++||..|++.|.+|+|+|+. +.+||.|.
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~------~~~GG~~~ 69 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRR------PHIGGNAY 69 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSSGGGC
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCceEEEecc------CCCCCccc
Confidence 34699999999999999999999999999999997 78999885
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00032 Score=74.79 Aligned_cols=100 Identities=15% Similarity=0.137 Sum_probs=74.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc----CC------------Cc-----ccHHHHHHHHHHHHHcCCEEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN----FL------------NT-----VDEEIAKKAFHLLNKQGLNII 629 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~----~l------------~~-----~d~~~~~~l~~~l~~~GV~i~ 629 (866)
..|+|||+|+.|+.+|..++++|.+|+++++... +. +. ..+++...+.+.+++.++++.
T Consensus 5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (314)
T 4a5l_A 5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII 84 (314)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence 3699999999999999999999999999987542 10 11 136778888888999999887
Q ss_pred eCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 630 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.. .+.......+...+... ++. ++.+|.+|+|||.+|....
T Consensus 85 ~~-~v~~~~~~~~~~~~~~~--~~~------~~~~~~liiATG~~~~~~~ 125 (314)
T 4a5l_A 85 TE-TIDHVDFSTQPFKLFTE--EGK------EVLTKSVIIATGATAKRMH 125 (314)
T ss_dssp CC-CEEEEECSSSSEEEEET--TCC------EEEEEEEEECCCEEECCCC
T ss_pred Ee-EEEEeecCCCceEEEEC--CCe------EEEEeEEEEcccccccccC
Confidence 54 45555544444444432 454 8999999999999887654
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00039 Score=81.04 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=76.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc------------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------------------------------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 608 (866)
.+|+|||+|..|+.+|..+++.|.+|+++++.+.+...
T Consensus 127 ~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~~ 206 (571)
T 1y0p_A 127 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP 206 (571)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 47999999999999999999999999999987643210
Q ss_pred ----------------------------------------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-
Q psy9583 609 ----------------------------------------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK- 641 (866)
Q Consensus 609 ----------------------------------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~- 641 (866)
....+...+.+.+++.||+++++++++++..++
T Consensus 207 ~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 286 (571)
T 1y0p_A 207 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK 286 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred HHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCC
Confidence 012345566677788899999999999998765
Q ss_pred CeEE-EEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 642 ENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 642 ~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
+.+. +.+...+|. ...+.+|.||+|+|....
T Consensus 287 g~v~Gv~~~~~~g~----~~~i~a~~VVlAtGg~~~ 318 (571)
T 1y0p_A 287 GTVKGILVKGMYKG----YYWVKADAVILATGGFAK 318 (571)
T ss_dssp SCEEEEEEEETTTE----EEEEECSEEEECCCCCTT
T ss_pred CeEEEEEEEeCCCc----EEEEECCeEEEeCCCccc
Confidence 5443 444433443 347899999999997543
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0001 Score=82.87 Aligned_cols=103 Identities=19% Similarity=0.297 Sum_probs=73.6
Q ss_pred eEEEECCcHHHHHHHHHHHhcC--CcEEEEecCCcCCC---cccHH-----------HHHHHHHHHHHcCCEEEeCceEE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFLN---TVDEE-----------IAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g--~~Vtli~~~~~~l~---~~d~~-----------~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
||+|||||+.|+.+|..|+++| .+|+++++.+...- .++.- +.....+.+++.|++++.++.++
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~ 81 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI 81 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence 5999999999999999999988 46999998765421 11100 11112345677899999999999
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.+......+.+.... .+ +..++.+|.+|+|||.+|+...
T Consensus 82 ~id~~~~~~~~~~~~-~~----~~~~~~yd~lVIATGs~p~~p~ 120 (437)
T 4eqs_A 82 AINDERQTVSVLNRK-TN----EQFEESYDKLILSPGASANSLG 120 (437)
T ss_dssp EEETTTTEEEEEETT-TT----EEEEEECSEEEECCCEEECCCC
T ss_pred EEEccCcEEEEEecc-CC----ceEEEEcCEEEECCCCcccccc
Confidence 998766555544321 12 2357899999999999987654
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00011 Score=86.12 Aligned_cols=105 Identities=15% Similarity=0.299 Sum_probs=78.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCCC---cc-----------cHHHHHHHHHHHHHcCCEEEeCce
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFLN---TV-----------DEEIAKKAFHLLNKQGLNIILNTK 633 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l~---~~-----------d~~~~~~l~~~l~~~GV~i~~~~~ 633 (866)
.++|+|||||+.|+.+|..|++. |.+|+++++.+.+.- .+ +..+...+....++.|+++++++.
T Consensus 36 ~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~~~~ 115 (588)
T 3ics_A 36 SRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRVLSE 115 (588)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEECSEE
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 57899999999999999999998 889999999887421 00 111233455666788999999999
Q ss_pred EEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 634 v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
|+++..++..+.+... .+|. ...+.+|.+++|+|.+|....
T Consensus 116 V~~id~~~~~v~v~~~-~~g~----~~~~~~d~lviAtG~~p~~p~ 156 (588)
T 3ics_A 116 VVKINKEEKTITIKNV-TTNE----TYNEAYDVLILSPGAKPIVPS 156 (588)
T ss_dssp EEEEETTTTEEEEEET-TTCC----EEEEECSEEEECCCEEECCCC
T ss_pred EEEEECCCCEEEEeec-CCCC----EEEEeCCEEEECCCCCCCCCC
Confidence 9999877766655432 1332 347899999999999887653
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=9.5e-05 Score=86.18 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=75.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCCC---ccc-----------HHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFLN---TVD-----------EEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l~---~~d-----------~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
++|+|||||+.|+.+|..|++. +.+|+++++.+.+.- .++ ..+........++.|++++++++|
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V 81 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHEV 81 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCEE
Confidence 5899999999999999999998 789999999887521 011 011112233344579999999999
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+++..++..+.+... .+|. ..++.+|.+++|||.+|....
T Consensus 82 ~~id~~~~~v~~~~~-~~g~----~~~~~~d~lviAtG~~p~~p~ 121 (565)
T 3ntd_A 82 VAIDRAAKLVTVRRL-LDGS----EYQESYDTLLLSPGAAPIVPP 121 (565)
T ss_dssp EEEETTTTEEEEEET-TTCC----EEEEECSEEEECCCEEECCCC
T ss_pred EEEECCCCEEEEEec-CCCC----eEEEECCEEEECCCCCCCCCC
Confidence 999877766554431 1232 347899999999999887654
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=83.21 Aligned_cols=98 Identities=15% Similarity=0.095 Sum_probs=68.6
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.+ .+. |. +
T Consensus 167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~------~~l---------~~---------------------~----- 205 (463)
T 2r9z_A 167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALED------RLL---------FQ---------------------F----- 205 (463)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSS---------TT---------------------S-----
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC------ccc---------cc---------------------c-----
Confidence 679999999999999999999999999999862 110 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCce-EEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKE-TITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~-~i~~d~lViATGs~p~~ 546 (866)
..++ ...+...+++.||+++.+..+. +.. ....+.+...+|+ ++.+|.||+|+|..|..
T Consensus 206 ~~~~--------------~~~l~~~l~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 266 (463)
T 2r9z_A 206 DPLL--------------SATLAENMHAQGIETHLEFAVAALER---DAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT 266 (463)
T ss_dssp CHHH--------------HHHHHHHHHHTTCEEESSCCEEEEEE---ETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred CHHH--------------HHHHHHHHHHCCCEEEeCCEEEEEEE---eCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence 0000 0113345677899999887554 322 1123556556777 89999999999998874
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=82.85 Aligned_cols=105 Identities=23% Similarity=0.344 Sum_probs=67.2
Q ss_pred CCeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCC------Cc-c------cHHH-------HHHHHHHHHHcCCE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFL------NT-V------DEEI-------AKKAFHLLNKQGLN 627 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l------~~-~------d~~~-------~~~l~~~l~~~GV~ 627 (866)
.++|+|||||+.|+.+|..|++. |.+|+++++.+.+. +. + ..++ ........++.|++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 36899999999999999999998 89999999988741 11 1 1111 12222223357999
Q ss_pred EEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 628 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
++++++++++..++..+.+... .+|. ...+.+|.+++|+|.+|....
T Consensus 83 ~~~~~~V~~id~~~~~v~~~~~-~~g~----~~~~~~d~lviAtG~~p~~p~ 129 (472)
T 3iwa_A 83 ALVETRAHAIDRAAHTVEIENL-RTGE----RRTLKYDKLVLALGSKANRPP 129 (472)
T ss_dssp EECSEEEEEEETTTTEEEEEET-TTCC----EEEEECSEEEECCCEEECCCS
T ss_pred EEECCEEEEEECCCCEEEEeec-CCCC----EEEEECCEEEEeCCCCcCCCC
Confidence 9999999999877766554431 1232 347899999999999887643
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00064 Score=78.02 Aligned_cols=103 Identities=18% Similarity=0.230 Sum_probs=78.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC--------CC----------c------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF--------LN----------T------------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~--------l~----------~------------------------ 608 (866)
.+|+|||||..|+-+|..|++.|.+|+++++.+.. .+ .
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP 87 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence 47999999999999999999999999999987510 00 0
Q ss_pred --------------------c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccE
Q psy9583 609 --------------------V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 609 --------------------~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~ 666 (866)
+ ...+...+.+.+++.|++++.+++|+++..+++.+. +.+...+|. ..++.+|.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~----~~~i~ad~ 163 (512)
T 3e1t_A 88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGV----ELMAHARF 163 (512)
T ss_dssp SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSC----EEEEEEEE
T ss_pred cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCC----EEEEEcCE
Confidence 0 123455667777789999999999999998877654 555544553 34799999
Q ss_pred EEEeeccccCC
Q psy9583 667 LLIAIGRIPNT 677 (866)
Q Consensus 667 vi~a~G~~p~~ 677 (866)
||.|+|.....
T Consensus 164 VI~AdG~~S~v 174 (512)
T 3e1t_A 164 IVDASGNRTRV 174 (512)
T ss_dssp EEECCCTTCSS
T ss_pred EEECCCcchHH
Confidence 99999987543
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00046 Score=75.22 Aligned_cols=57 Identities=12% Similarity=0.154 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCe-EEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+...+.+.+++.|++++++++|+++..++++ +.+.+. +|+ ..++.+|.||+|+|...
T Consensus 152 ~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~--~g~----~~~~~a~~VV~A~G~~s 209 (369)
T 3dme_A 152 LMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFG--GAE----PMTLSCRVLINAAGLHA 209 (369)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEEC--TTS----CEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEEC--CCc----eeEEEeCEEEECCCcch
Confidence 3445566778889999999999999987655 665553 442 24799999999999764
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=82.84 Aligned_cols=100 Identities=16% Similarity=0.282 Sum_probs=67.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++. +.+....
T Consensus 184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~------~~~l~~~----------------------------------- 222 (478)
T 1v59_A 184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQ------PQIGASM----------------------------------- 222 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS------SSSSSSS-----------------------------------
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeC------Ccccccc-----------------------------------
Confidence 67999999999999999999999999999986 2221100
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcC-----CceEEEecEEEEecCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINK-----TKETITAKYIIIATGSKA 544 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~-----~g~~i~~d~lViATGs~p 544 (866)
+ ..+...+...+++.||+++.++.+. +... ...+.+.+... ++.++.+|.||+|+|.+|
T Consensus 223 --~------------~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p 287 (478)
T 1v59_A 223 --D------------GEVAKATQKFLKKQGLDFKLSTKVISAKRN-DDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRP 287 (478)
T ss_dssp --C------------HHHHHHHHHHHHHTTCEEECSEEEEEEEEE-TTTTEEEEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred --C------------HHHHHHHHHHHHHCCCEEEeCCEEEEEEEe-cCCCeEEEEEEEcCCCCceEEECCEEEECCCCCc
Confidence 0 0011123445778899999987665 3210 01122333322 346899999999999988
Q ss_pred cC
Q psy9583 545 RS 546 (866)
Q Consensus 545 ~~ 546 (866)
..
T Consensus 288 ~~ 289 (478)
T 1v59_A 288 YI 289 (478)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00047 Score=73.49 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=73.0
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc---C--------CCc----ccHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN---F--------LNT----VDEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~---~--------l~~----~d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
-.|+|||+|+.|+.+|..+++.|.+|+++++... + .+. ..+++.........+.+..+..+....
T Consensus 7 yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (312)
T 4gcm_A 7 FDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKS 86 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEECCCCE
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccceeeee
Confidence 3689999999999999999999999999987531 0 011 236777777888888888888877766
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
....... ..+ . .++. ++.+|.+|+|||.+|....
T Consensus 87 ~~~~~~~-~~~-~--~~~~------~~~~d~liiAtGs~~~~~~ 120 (312)
T 4gcm_A 87 VEDKGEY-KVI-N--FGNK------ELTAKAVIIATGAEYKKIG 120 (312)
T ss_dssp EEECSSC-EEE-E--CSSC------EEEEEEEEECCCEEECCCC
T ss_pred eeeeecc-eee-c--cCCe------EEEeceeEEcccCccCcCC
Confidence 5543332 111 1 2444 8999999999999887644
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=4.2e-05 Score=86.54 Aligned_cols=42 Identities=33% Similarity=0.554 Sum_probs=38.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
++||+|||||++|++||..|++.|++|+|+|++ +.+||.|..
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~------~~~GG~~~~ 46 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEAR------DRVGGRTWT 46 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCTTCCE
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECC------CCCCCceec
Confidence 589999999999999999999999999999998 688988743
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=2.7e-05 Score=87.46 Aligned_cols=98 Identities=24% Similarity=0.300 Sum_probs=71.1
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcC--CcEEEEecCCcCC--Cccc---------HHHHHHHHHHHHHcCCEEEeCceEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFL--NTVD---------EEIAKKAFHLLNKQGLNIILNTKIHD 636 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g--~~Vtli~~~~~~l--~~~d---------~~~~~~l~~~l~~~GV~i~~~~~v~~ 636 (866)
.|+|+|||||+.|+.+|..|++++ .+||++++++.+. +.+. .++...+.+.+++.||+++.+ ++++
T Consensus 2 ~K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~ 80 (430)
T 3hyw_A 2 AKHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAES 80 (430)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEE
T ss_pred CCcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEE
Confidence 478999999999999999999876 6899999987643 1111 111112234566789999865 6888
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCC
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~ 678 (866)
|..++.. +++ .+|+ ++.+|.+|+|+|.++...
T Consensus 81 Id~~~~~--V~~--~~g~------~i~YD~LViAtG~~~~~~ 112 (430)
T 3hyw_A 81 IDPDANT--VTT--QSGK------KIEYDYLVIATGPKLVFG 112 (430)
T ss_dssp EETTTTE--EEE--TTCC------EEECSEEEECCCCEEECC
T ss_pred EECCCCE--EEE--CCCC------EEECCEEEEeCCCCccCC
Confidence 8876654 333 3666 899999999999876543
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=6.2e-05 Score=81.00 Aligned_cols=54 Identities=22% Similarity=0.195 Sum_probs=40.6
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccch
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSK 444 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~ 444 (866)
+||+|||||+||+.||..|++.|++|+|||+.+.+....+..+.+.+..|.|+.
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~h~~d~i~eL~CnpSi 55 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPAHGTDRFAEIVCSNSL 55 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSSCCSSCTTCCCSCCEE
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCccccCCCccccccCcCC
Confidence 799999999999999999999999999999874322222233445555566653
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00048 Score=80.14 Aligned_cols=102 Identities=18% Similarity=0.267 Sum_probs=76.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc------------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------------------------------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------------------------------------------ 608 (866)
-.|+|||+|..|+.+|..+++.|.+|+++++.+.+...
T Consensus 122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~ 201 (566)
T 1qo8_A 122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 201 (566)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence 37999999999999999999999999999987643210
Q ss_pred ----------------------------------------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-
Q psy9583 609 ----------------------------------------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK- 641 (866)
Q Consensus 609 ----------------------------------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~- 641 (866)
....+...+.+.+++.||++++++.++++..++
T Consensus 202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~ 281 (566)
T 1qo8_A 202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD 281 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence 012344556677788899999999999998776
Q ss_pred CeEE-EEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 642 ENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 642 ~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
+.+. +.+...+|. ...+.+|.||+|+|....
T Consensus 282 g~v~Gv~~~~~~g~----~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 282 HSVVGAVVHGKHTG----YYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp SBEEEEEEEETTTE----EEEEEEEEEEECCCCCTT
T ss_pred CcEEEEEEEeCCCc----EEEEEcCEEEEecCCccc
Confidence 5543 445433443 346899999999997554
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.55 E-value=4.4e-05 Score=83.75 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=38.8
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcccee
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV 438 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~ 438 (866)
+||+|||||++|+++|.+|++.|++|+|+|++ +.+||.|...
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~------~~~GG~~~~~ 43 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKR------NHIGGNAYTE 43 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSS------SSSSGGGCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEecC------CCCCcceEee
Confidence 79999999999999999999999999999998 6899988653
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00052 Score=79.31 Aligned_cols=100 Identities=17% Similarity=0.234 Sum_probs=79.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC--------------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------------------------------------------- 606 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------------------------------------------- 606 (866)
.+|+|||||+.|+-+|..|++.|.+|+++++.+...
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE 85 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence 479999999999999999999999999999875320
Q ss_pred -------C----c------------------c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC----eEEEEEeeCC
Q psy9583 607 -------N----T------------------V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKE----NVLINYSNKS 652 (866)
Q Consensus 607 -------~----~------------------~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~----~~~v~~~~~~ 652 (866)
. . + ...+...+.+.+++.|+++++++++++++.+++ ++.+.+.+.+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~ 165 (535)
T 3ihg_A 86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPD 165 (535)
T ss_dssp SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETT
T ss_pred ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCC
Confidence 0 0 0 134556667778888999999999999999887 8888887543
Q ss_pred CCccceeEEEeccEEEEeecccc
Q psy9583 653 TNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 653 g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+ ..++.+|.||.|.|...
T Consensus 166 ~-----~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 166 G-----EYDLRAGYLVGADGNRS 183 (535)
T ss_dssp E-----EEEEEEEEEEECCCTTC
T ss_pred C-----eEEEEeCEEEECCCCcc
Confidence 3 24799999999999754
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00043 Score=76.47 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=77.4
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC------CCc------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF------LNT------------------------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~------l~~------------------------------------ 608 (866)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.. ...
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 36999999999999999999999999999987631 000
Q ss_pred ------------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC-CeEEEEEeeCCCCccceeEEEeccEEEE
Q psy9583 609 ------------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK-ENVLINYSNKSTNVKTEIITSIFDKLLI 669 (866)
Q Consensus 609 ------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~-~~~~v~~~~~~g~~~~~~~~~~~D~vi~ 669 (866)
...++...+.+.+.+.|++++++++|++++.++ +.+.+++.. +|. ..++.+|.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~-~g~----~~~~~a~~vV~ 157 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFER-DGE----RLRLDCDYIAG 157 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEE-TTE----EEEEECSEEEE
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEec-CCc----EEEEEeCEEEE
Confidence 013345566677777899999999999998763 456666632 443 23689999999
Q ss_pred eeccccCC
Q psy9583 670 AIGRIPNT 677 (866)
Q Consensus 670 a~G~~p~~ 677 (866)
|.|.....
T Consensus 158 AdG~~S~v 165 (394)
T 1k0i_A 158 CDGFHGIS 165 (394)
T ss_dssp CCCTTCST
T ss_pred CCCCCcHH
Confidence 99987664
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00013 Score=82.38 Aligned_cols=100 Identities=17% Similarity=0.101 Sum_probs=68.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+++++.+ .+... +
T Consensus 167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~------~~l~~------~---------------------------- 206 (450)
T 1ges_A 167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD------APLPS------F---------------------------- 206 (450)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSSTT------S----------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCC------chhhh------h----------------------------
Confidence 3689999999999999999999999999999862 21100 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..+ +...+...+++.||+++.+..+. +.. .....+.+...+|+++.+|.||+|+|..|..
T Consensus 207 -~~~--------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~ 267 (450)
T 1ges_A 207 -DPM--------------ISETLVEVMNAEGPQLHTNAIPKAVVK--NTDGSLTLELEDGRSETVDCLIWAIGREPAN 267 (450)
T ss_dssp -CHH--------------HHHHHHHHHHHHSCEEECSCCEEEEEE--CTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred -hHH--------------HHHHHHHHHHHCCCEEEeCCEEEEEEE--eCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 000 01112344667799999886554 322 1112245555667789999999999998874
|
| >3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00013 Score=65.15 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=41.6
Q ss_pred EEEEEEEe-CCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC
Q psy9583 18 ATLLNWHK-KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS 66 (866)
Q Consensus 18 g~i~~w~~-~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~ 66 (866)
|.|+.... ++|+.|++||+++.||++|+..+|.||.+|+|.+++..-.+
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~ 81 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE 81 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence 45555544 79999999999999999999999999999999988755443
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=4.7e-05 Score=86.66 Aligned_cols=54 Identities=11% Similarity=0.191 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCe-EEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
.+.+.+.+.+++.|++|++++.|++|+.++++ +.+.. ++. ++.+|.||+|++..
T Consensus 235 ~l~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~---~~~------~~~ad~vv~a~p~~ 289 (477)
T 3nks_A 235 MLPQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSL---RDS------SLEADHVISAIPAS 289 (477)
T ss_dssp HHHHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEEC---SSC------EEEESEEEECSCHH
T ss_pred HHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEE---CCe------EEEcCEEEECCCHH
Confidence 56778888899999999999999999887655 55533 343 78999999999753
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00014 Score=80.96 Aligned_cols=98 Identities=13% Similarity=0.265 Sum_probs=73.7
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCCcCCC---cc----------cHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNFLN---TV----------DEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~~~l~---~~----------d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
++++|||+|+.|+.+|..|++.|. +|+++++.+.+.- .+ ..++.....+.+.+.|++++. ++++
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~~v~ 80 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-DRMV 80 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-CCEE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-EEEE
Confidence 689999999999999999999998 8999998774311 11 111222345667788999999 9999
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.+..+... +.+. +|. .+.+|.+++|||.+|....
T Consensus 81 ~id~~~~~--v~~~--~g~------~~~~d~lvlAtG~~p~~~~ 114 (404)
T 3fg2_P 81 SIDREGRK--LLLA--SGT------AIEYGHLVLATGARNRMLD 114 (404)
T ss_dssp EEETTTTE--EEES--SSC------EEECSEEEECCCEEECCCC
T ss_pred EEECCCCE--EEEC--CCC------EEECCEEEEeeCCCccCCC
Confidence 99866543 3333 555 8999999999999887543
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00026 Score=80.52 Aligned_cols=100 Identities=20% Similarity=0.309 Sum_probs=68.0
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.+ .+... . +
T Consensus 179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~------~~l~~--------~---------------------~----- 218 (474)
T 1zmd_A 179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLG------HVGGV--------G---------------------I----- 218 (474)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSSCS--------S---------------------C-----
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccC------ccCCc--------c---------------------c-----
Confidence 679999999999999999999999999999862 21100 0 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEE-----cCCceEEEecEEEEecCCCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQII-----NKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~-----~~~g~~i~~d~lViATGs~p 544 (866)
..+ +...+...+++.||+++.++.+. +.. + ....+.+. +.++.++.+|.||+|+|.+|
T Consensus 219 ~~~--------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~-~-~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p 282 (474)
T 1zmd_A 219 DME--------------ISKNFQRILQKQGFKFKLNTKVTGATK-K-SDGKIDVSIEAASGGKAEVITCDVLLVCIGRRP 282 (474)
T ss_dssp CHH--------------HHHHHHHHHHHTTCEEECSEEEEEEEE-C-TTSCEEEEEEETTSCCCEEEEESEEEECSCEEE
T ss_pred CHH--------------HHHHHHHHHHHCCCEEEeCceEEEEEE-c-CCceEEEEEEecCCCCceEEEcCEEEECcCCCc
Confidence 000 01123445778899999987766 322 1 11114443 34557899999999999988
Q ss_pred cC
Q psy9583 545 RS 546 (866)
Q Consensus 545 ~~ 546 (866)
..
T Consensus 283 ~~ 284 (474)
T 1zmd_A 283 FT 284 (474)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.49 E-value=5.6e-05 Score=86.80 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=38.0
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
|.+.+||+|||||++|++||..|++.|++|+|+|+. +.+||.+.
T Consensus 10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~------~~~GG~~~ 53 (504)
T 1sez_A 10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE------GKAGGKLR 53 (504)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS------SSSCSSCC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeC------CCCCCcee
Confidence 445689999999999999999999999999999998 78888763
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00026 Score=82.16 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=79.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------------------------------------C-----c
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------------------------------------N-----T 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------------------------------------~-----~ 608 (866)
..|+|||||+.|+-+|..|++.|.+|+++++.+... . .
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 129 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG 129 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence 479999999999999999999999999999754210 0 0
Q ss_pred ---------------c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeec
Q psy9583 609 ---------------V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 609 ---------------~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G 672 (866)
+ ...+...+.+.+++.|++++++++|++++.+++++.+++...+|. .++.+|+||.|.|
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~-----~~~~a~~vV~ADG 204 (570)
T 3fmw_A 130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGP-----YPVRARYGVGCDG 204 (570)
T ss_dssp CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEE-----EEEEESEEEECSC
T ss_pred ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCc-----EEEEeCEEEEcCC
Confidence 0 134566677778888999999999999998888888887644551 3799999999999
Q ss_pred ccc
Q psy9583 673 RIP 675 (866)
Q Consensus 673 ~~p 675 (866)
...
T Consensus 205 ~~S 207 (570)
T 3fmw_A 205 GRS 207 (570)
T ss_dssp SSC
T ss_pred CCc
Confidence 765
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00012 Score=82.84 Aligned_cols=103 Identities=17% Similarity=0.245 Sum_probs=74.9
Q ss_pred eEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCCC-----------cc---c-HHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFLN-----------TV---D-EEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l~-----------~~---d-~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
+++|||||+.|+.+|..|++. |.+|+++++.+.+.. .. + .++...+.+.+++.|++++.++.+
T Consensus 2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 81 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRHQV 81 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESEEE
T ss_pred eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCCEE
Confidence 689999999999999999998 999999999875311 00 1 111122346677889999999999
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..+..+++.+.+... .++. ..++.+|.+++|+|.+|....
T Consensus 82 ~~i~~~~~~v~v~~~-~~g~----~~~~~~d~lviAtGs~p~~p~ 121 (452)
T 2cdu_A 82 TNVDPETKTIKVKDL-ITNE----EKTEAYDKLIMTTGSKPTVPP 121 (452)
T ss_dssp EEEEGGGTEEEEEET-TTCC----EEEEECSEEEECCCEEECCCC
T ss_pred EEEEcCCCEEEEEec-CCCc----eEEEECCEEEEccCCCcCCCC
Confidence 998766665554321 1221 247999999999999887654
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=7.8e-05 Score=82.83 Aligned_cols=99 Identities=16% Similarity=0.298 Sum_probs=70.7
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcC--CcEEEEecCCcCCC-cccHHH---------HHHHHHHHHHcCCEEEeCceEEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFLN-TVDEEI---------AKKAFHLLNKQGLNIILNTKIHDI 637 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g--~~Vtli~~~~~~l~-~~d~~~---------~~~l~~~l~~~GV~i~~~~~v~~i 637 (866)
+|+|+|||||+.|+.+|..|++.+ .+|+++++++.+.. .+...+ ...-.+.+.++||+++.+ +++.|
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence 689999999999999999998876 48999998875421 111111 111124566789999854 68888
Q ss_pred EEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 638 KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 638 ~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..+... +.+ .+|. ++.+|.+++|+|.+++...
T Consensus 81 d~~~~~--v~~--~~g~------~i~yd~LviAtG~~~~~~~ 112 (401)
T 3vrd_B 81 DPDKKL--VKT--AGGA------EFAYDRCVVAPGIDLLYDK 112 (401)
T ss_dssp ETTTTE--EEE--TTSC------EEECSEEEECCCEEECGGG
T ss_pred EccCcE--EEe--cccc------eeecceeeeccCCccccCC
Confidence 766543 233 3665 8999999999999887643
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00041 Score=76.19 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
.+...+.+.+++.|++++.++.|+++..+++++.+.. .+| ++.+|.||+|+|...
T Consensus 165 ~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~--~~g-------~~~a~~vV~A~G~~s 219 (382)
T 1ryi_A 165 FVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKT--PSG-------DVWANHVVVASGVWS 219 (382)
T ss_dssp HHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEE--TTE-------EEEEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEc--CCc-------eEEcCEEEECCChhH
Confidence 3556677788889999999999999987776664433 232 689999999999854
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=6.8e-05 Score=85.71 Aligned_cols=41 Identities=27% Similarity=0.621 Sum_probs=37.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
+.+||+|||||++||+||..|++.|++|+|+|+. +.+||.+
T Consensus 10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~------~~~GG~~ 50 (489)
T 2jae_A 10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEAR------TRPGGRV 50 (489)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS------SSSCTTC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecc------CCCCCce
Confidence 3589999999999999999999999999999998 6778864
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00015 Score=80.83 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=75.1
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCc--EEEEecCCcCCC---cc----------cHHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSE--VTILEMSSNFLN---TV----------DEEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~--Vtli~~~~~~l~---~~----------d~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
..+|+|||+|+.|+.+|..|++.|.+ |+++++.+.+.- .+ ...+.....+.+++.|++++.++++
T Consensus 9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 88 (415)
T 3lxd_A 9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEV 88 (415)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEETCCE
T ss_pred CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeCCEE
Confidence 35899999999999999999999987 999998765311 11 1122223356677899999999999
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+.+...... +.+ .++. .+.+|.+++|+|.+|....
T Consensus 89 ~~id~~~~~--v~~--~~g~------~~~~d~lvlAtG~~~~~~~ 123 (415)
T 3lxd_A 89 VSLDPAAHT--VKL--GDGS------AIEYGKLIWATGGDPRRLS 123 (415)
T ss_dssp EEEETTTTE--EEE--TTSC------EEEEEEEEECCCEECCCCB
T ss_pred EEEECCCCE--EEE--CCCC------EEEeeEEEEccCCccCCCC
Confidence 999766543 333 3565 8999999999999887643
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00023 Score=80.26 Aligned_cols=104 Identities=20% Similarity=0.250 Sum_probs=75.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCC--C-cc----------cHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFL--N-TV----------DEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l--~-~~----------d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
++++|||+|+.|+.+|..|++. |.+|+++++.+.+. + .+ ..++.....+.+++.|++++.++.+.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 80 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEIT 80 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEEE
Confidence 3699999999999999999998 89999999987542 1 00 01112223466778899999999999
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.+..+++.+.+... .+|. ..++.+|.+++|+|.+|....
T Consensus 81 ~i~~~~~~v~~~~~-~~g~----~~~~~~d~lviAtG~~p~~p~ 119 (447)
T 1nhp_A 81 AIQPKEHQVTVKDL-VSGE----ERVENYDKLIISPGAVPFELD 119 (447)
T ss_dssp EEETTTTEEEEEET-TTCC----EEEEECSEEEECCCEEECCCC
T ss_pred EEeCCCCEEEEEec-CCCc----eEEEeCCEEEEcCCCCcCCCC
Confidence 98776665544321 2343 235899999999999987654
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00045 Score=74.76 Aligned_cols=96 Identities=14% Similarity=0.266 Sum_probs=69.6
Q ss_pred CeEEEECCcHHHHHHHHHHHh---cCCcEEEEecCCcCCC--------------------cc---cH---HHH-------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRR---LGSEVTILEMSSNFLN--------------------TV---DE---EIA------- 614 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~---~g~~Vtli~~~~~~l~--------------------~~---d~---~~~------- 614 (866)
.+|+|||||..|+-+|..|++ .|.+|+++++.+.+.. .+ +. .+.
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~ 81 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELL 81 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHH
Confidence 369999999999999999999 8999999998653211 00 00 111
Q ss_pred -------------------------------HHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEe
Q psy9583 615 -------------------------------KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663 (866)
Q Consensus 615 -------------------------------~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~ 663 (866)
..+....++.|++++++++|++++.+++++.+.+. +|. .+.
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~--~g~------~~~ 153 (342)
T 3qj4_A 82 AYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQ--TGS------PEQ 153 (342)
T ss_dssp HTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEES--SSC------CEE
T ss_pred hCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEEC--CCC------EEE
Confidence 11122223348999999999999998888776664 554 578
Q ss_pred ccEEEEeeccc
Q psy9583 664 FDKLLIAIGRI 674 (866)
Q Consensus 664 ~D~vi~a~G~~ 674 (866)
+|.||+|+...
T Consensus 154 ad~vV~A~p~~ 164 (342)
T 3qj4_A 154 FDLIVLTMPVP 164 (342)
T ss_dssp ESEEEECSCHH
T ss_pred cCEEEECCCHH
Confidence 99999999753
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=5.1e-05 Score=87.37 Aligned_cols=41 Identities=32% Similarity=0.409 Sum_probs=37.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCC-CeEEEEeccCCCcccccCCCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG-FKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~~~~~~~~~GG~~~ 436 (866)
.+||+|||||++||+||..|++.| ++|+|+|+. +.+||.+.
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~------~riGGr~~ 49 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEAR------DRVGGRLQ 49 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSS------SSSBTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCC------CCCCCcee
Confidence 489999999999999999999999 999999998 78898763
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00081 Score=78.20 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=76.4
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-----------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT----------------------------------------- 608 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~----------------------------------------- 608 (866)
..+|+|||+|..|+.+|..+++.|.+|+++++.+.+...
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 205 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 357999999999999999999999999999986643200
Q ss_pred -----------------------------------------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC
Q psy9583 609 -----------------------------------------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINK 641 (866)
Q Consensus 609 -----------------------------------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~ 641 (866)
....+...+.+.+++.||++++++.++++..++
T Consensus 206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~ 285 (572)
T 1d4d_A 206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA 285 (572)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence 012344566677788899999999999997665
Q ss_pred -CeEE-EEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 642 -ENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 642 -~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
+.+. +.+.+.+|. ...+.+|.||+|+|..++
T Consensus 286 ~g~v~GV~~~~~~G~----~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 286 SGKVTGVLVKGEYTG----YYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp -CCEEEEEEEETTTE----EEEEECSEEEECCCCCTT
T ss_pred CCeEEEEEEEeCCCc----EEEEEcCEEEEeCCCCcc
Confidence 4433 444433443 347899999999997664
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.47 E-value=7.9e-05 Score=81.30 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=38.9
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
.+.+||+|||||++|++||..|++.|++|+|+|+.+ +.+||.|..
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~-----~~vGGr~~t 86 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANA-----NRVGGRIKT 86 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCS-----SCCBTTCCE
T ss_pred CCCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-----cccCCceee
Confidence 346899999999999999999999999999999851 368888753
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00046 Score=81.70 Aligned_cols=34 Identities=35% Similarity=0.612 Sum_probs=32.2
Q ss_pred ccceeeecCCccHHHHHHHHHH-----CCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ-----LGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~-----~g~~V~liek~~ 423 (866)
++||+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~ 46 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 46 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence 5899999999999999999999 999999999974
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.46 E-value=4.4e-05 Score=86.66 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=37.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCC------CeEEEEeccCCCcccccCCCccce
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG------FKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g------~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
++||+|||||++||+||++|++.| ++|+|+|+. +.+||.+..
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~------~~~GG~~~s 52 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEAS------PRVGGKIQT 52 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSS------SSSCTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECC------CCCCceEEE
Confidence 489999999999999999999999 999999997 678886543
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.45 E-value=7.4e-05 Score=83.90 Aligned_cols=58 Identities=19% Similarity=0.226 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
..+.+.+.+.+++.|+++++++.|++|..+++++..... +|. ++.+|.||+++|..+.
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~--~g~------~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKS--EGE------VARCKQLICDPSYVPD 291 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEE--TTE------EEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEE--CCe------EEECCEEEECCCCCcc
Confidence 467788888888999999999999999887776654333 554 7899999999998764
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.45 E-value=7.4e-05 Score=83.96 Aligned_cols=47 Identities=26% Similarity=0.410 Sum_probs=41.6
Q ss_pred hcccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcccee
Q psy9583 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV 438 (866)
Q Consensus 386 ~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~ 438 (866)
.|...+||+|||+|.+|+.+|..|++.|++|+++|++ +.+||.|...
T Consensus 16 ~~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~------~~~Gg~~~s~ 62 (475)
T 3p1w_A 16 FQGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRN------PYYGGETASL 62 (475)
T ss_dssp -CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCGGGCEE
T ss_pred cccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEecc------CCCCCCcccc
Confidence 4555799999999999999999999999999999998 7899988654
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.001 Score=75.91 Aligned_cols=102 Identities=14% Similarity=0.159 Sum_probs=80.2
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC------------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN------------------------------------------ 607 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 607 (866)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 91 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVDF 91 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEEG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceeccc
Confidence 45799999999999999999999999999987543210
Q ss_pred -----c------c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 608 -----T------V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 608 -----~------~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
. + ...+...+.+.+++.|+++++++++++++.+++++.+++.+.+| ..++.+|.||.|.|...
T Consensus 92 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g-----~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 92 GVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDG-----PRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp GGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSC-----EEEEEEEEEEECCCTTC
T ss_pred ccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCC-----cEEEEeCEEEEccCccc
Confidence 0 0 13455666777778899999999999999988888888764333 24789999999999865
Q ss_pred C
Q psy9583 676 N 676 (866)
Q Consensus 676 ~ 676 (866)
.
T Consensus 167 ~ 167 (499)
T 2qa2_A 167 T 167 (499)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.001 Score=75.97 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=79.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC------------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN------------------------------------------ 607 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 607 (866)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 90 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDF 90 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEEG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceeccc
Confidence 35799999999999999999999999999987543210
Q ss_pred -----c------c-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 608 -----T------V-DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 608 -----~------~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
. + -..+...+.+.+++.|+++++++++++++.+++++.+++.+.+| ..++.+|.||.|.|...
T Consensus 91 ~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g-----~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 91 GVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEG-----KHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp GGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTE-----EEEEEESEEEECCCTTC
T ss_pred ccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCC-----CEEEEeCEEEECCCcch
Confidence 0 0 13455666677778899999999999999988888888774433 24789999999999865
Q ss_pred C
Q psy9583 676 N 676 (866)
Q Consensus 676 ~ 676 (866)
.
T Consensus 166 ~ 166 (500)
T 2qa1_A 166 S 166 (500)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00019 Score=80.84 Aligned_cols=89 Identities=19% Similarity=0.312 Sum_probs=70.1
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC-------CCc--ccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF-------LNT--VDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~-------l~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ .+. ++.++.....+.+++.||++++++.+.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~---- 196 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVG---- 196 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEec----
Confidence 3578999999999999999999999999999998765 222 366778888889999999999988762
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
. . +.+. ++ ...+|.|++|+|..
T Consensus 197 -~-~--v~~~--~~-------~~~~d~vvlAtG~~ 218 (456)
T 2vdc_G 197 -R-D--ASLP--EL-------RRKHVAVLVATGVY 218 (456)
T ss_dssp -T-T--BCHH--HH-------HSSCSEEEECCCCC
T ss_pred -c-E--EEhh--Hh-------HhhCCEEEEecCCC
Confidence 0 1 1111 11 35699999999986
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00066 Score=75.41 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC------------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN------------------------------------------ 607 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------ 607 (866)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~g 102 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRSG 102 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCCC
Confidence 45899999999999999999999999999998764310
Q ss_pred ----ccc-----------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccE
Q psy9583 608 ----TVD-----------------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 608 ----~~d-----------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~ 666 (866)
.++ ..+.+.+.+.+.+ ++++++++|++++.+++++.+.+. +|. ++.+|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~--~g~------~~~a~~ 172 (407)
T 3rp8_A 103 ENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFT--DGS------SASGDL 172 (407)
T ss_dssp CEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEET--TSC------EEEESE
T ss_pred CEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEc--CCC------EEeeCE
Confidence 000 1233344444444 789999999999998888777664 665 899999
Q ss_pred EEEeeccccCC
Q psy9583 667 LLIAIGRIPNT 677 (866)
Q Consensus 667 vi~a~G~~p~~ 677 (866)
||.|.|.....
T Consensus 173 vV~AdG~~S~v 183 (407)
T 3rp8_A 173 LIAADGSHSAL 183 (407)
T ss_dssp EEECCCTTCSS
T ss_pred EEECCCcChHH
Confidence 99999987544
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=7.5e-05 Score=81.71 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=33.7
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
|+.++||+|||||++|+++|++|++.|++|+|||+.
T Consensus 3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 555799999999999999999999999999999996
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00032 Score=78.04 Aligned_cols=100 Identities=13% Similarity=0.238 Sum_probs=72.6
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCCcCCC---cccHHHHHH-H-----HHHHHHcCCEEEeCceEEEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNFLN---TVDEEIAKK-A-----FHLLNKQGLNIILNTKIHDIK 638 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~~~l~---~~d~~~~~~-l-----~~~l~~~GV~i~~~~~v~~i~ 638 (866)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+.- .+...+... . .+.+++.|++++.++.++.+.
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~ 86 (408)
T 2gqw_A 7 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD 86 (408)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEEE
T ss_pred CCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCCCCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEEE
Confidence 4679999999999999999999987 4999999876431 222222110 0 003556799999999999987
Q ss_pred EcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 639 INKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 639 ~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.+... +.+. +|. ++.+|.+|+|+|.+|....
T Consensus 87 ~~~~~--v~~~--~g~------~~~~d~lviAtG~~~~~~~ 117 (408)
T 2gqw_A 87 PQAHT--VALS--DGR------TLPYGTLVLATGAAPRALP 117 (408)
T ss_dssp TTTTE--EEET--TSC------EEECSEEEECCCEEECCCG
T ss_pred CCCCE--EEEC--CCC------EEECCEEEECCCCCCCCCC
Confidence 65433 3343 555 7999999999999887643
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00071 Score=78.20 Aligned_cols=99 Identities=19% Similarity=0.290 Sum_probs=74.2
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC--------C-------------cc----------------cHHH
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL--------N-------------TV----------------DEEI 613 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l--------~-------------~~----------------d~~~ 613 (866)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .+ .+++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 479999999999999999999999999999876431 0 01 1345
Q ss_pred HHHHHHHHHHcC--CEEEeCceEEEEEEcCC--eEEEEEeeCCCCccceeEEEeccEEEEeecc--ccCC
Q psy9583 614 AKKAFHLLNKQG--LNIILNTKIHDIKINKE--NVLINYSNKSTNVKTEIITSIFDKLLIAIGR--IPNT 677 (866)
Q Consensus 614 ~~~l~~~l~~~G--V~i~~~~~v~~i~~~~~--~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~--~p~~ 677 (866)
.+++....++.+ +.++++++|++++.+++ .+.+.+. +|. ++.+|.||+|+|. .|..
T Consensus 97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~--~G~------~~~ad~vV~AtG~~s~p~~ 158 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTN--HGD------RIRARYLIMASGQLSVPQL 158 (542)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEET--TCC------EEEEEEEEECCCSCCCCCC
T ss_pred HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEEC--CCC------EEEeCEEEECcCCCCCCCC
Confidence 555666566655 67899999999987653 5566553 565 7899999999995 4543
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=8.8e-05 Score=81.81 Aligned_cols=42 Identities=29% Similarity=0.488 Sum_probs=38.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
++||+|||||++|+++|..|++.|++|+|+|++ +.+||.|..
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~------~~~GG~~~~ 44 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQR------DHIGGNSYD 44 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS------SSSSGGGCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEec------CCcCCcccc
Confidence 489999999999999999999999999999998 788988743
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00053 Score=75.96 Aligned_cols=101 Identities=19% Similarity=0.347 Sum_probs=73.1
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-----cc---c---HH----------H---------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-----TV---D---EE----------I--------------- 613 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-----~~---d---~~----------~--------------- 613 (866)
..+|+|||||+.|+.+|..|++.|.+|+++++.+.... .+ . .. +
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 105 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADEK 105 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECCC
Confidence 46899999999999999999999999999998764321 00 0 00 0
Q ss_pred ---------------------HHHHHHHHHHc--CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEe
Q psy9583 614 ---------------------AKKAFHLLNKQ--GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIA 670 (866)
Q Consensus 614 ---------------------~~~l~~~l~~~--GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a 670 (866)
...+.+.|.+. +++++++++|++++.+++++.+++. +|. ++.+|.||.|
T Consensus 106 g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g~------~~~ad~vV~A 177 (398)
T 2xdo_A 106 GNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFE--NKP------SETADLVILA 177 (398)
T ss_dssp SEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEET--TSC------CEEESEEEEC
T ss_pred CCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEEC--CCc------EEecCEEEEC
Confidence 01122233221 3578999999999988777777664 565 6899999999
Q ss_pred eccccCCC
Q psy9583 671 IGRIPNTN 678 (866)
Q Consensus 671 ~G~~p~~~ 678 (866)
.|......
T Consensus 178 dG~~S~vR 185 (398)
T 2xdo_A 178 NGGMSKVR 185 (398)
T ss_dssp SCTTCSCC
T ss_pred CCcchhHH
Confidence 99876543
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00032 Score=80.32 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=68.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.+ .+. |. +
T Consensus 177 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~------~~l---------~~---------------------~----- 215 (500)
T 1onf_A 177 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGN------RIL---------RK---------------------F----- 215 (500)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS------SSC---------TT---------------------S-----
T ss_pred CeEEEECChHHHHHHHHHHHHcCCeEEEEecCC------ccC---------cc---------------------c-----
Confidence 679999999999999999999999999999862 210 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceE-EEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKET-ITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~-i~~d~lViATGs~p~~ 546 (866)
..+ +...+...+++.||+++.+..+. +.. + ....+.+...+|++ +.+|.||+|+|..|..
T Consensus 216 d~~--------------~~~~l~~~l~~~gv~i~~~~~v~~i~~-~-~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~ 277 (500)
T 1onf_A 216 DES--------------VINVLENDMKKNNINIVTFADVVEIKK-V-SDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT 277 (500)
T ss_dssp CHH--------------HHHHHHHHHHHTTCEEECSCCEEEEEE-S-STTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred chh--------------hHHHHHHHHHhCCCEEEECCEEEEEEE-c-CCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence 000 01113445778899999887655 322 1 11224555556766 9999999999998874
|
| >3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00022 Score=64.88 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=39.4
Q ss_pred EEEEEEEe-CCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecC
Q psy9583 18 ATLLNWHK-KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITD 64 (866)
Q Consensus 18 g~i~~w~~-~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~ 64 (866)
|.|+-... ++|+.|++||+++.||++|+..+|.||.+|+|.+++-.-
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L 101 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAAL 101 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhh
Confidence 34444333 899999999999999999999999999999999886544
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0012 Score=76.86 Aligned_cols=101 Identities=26% Similarity=0.325 Sum_probs=78.0
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL------------------------------------------- 606 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l------------------------------------------- 606 (866)
..+|+|||||+.|+-+|..|++.|.+|+++++.+...
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 4689999999999999999999999999999863110
Q ss_pred -----------------C---cc-cHHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeEEEEEeeCCCCccceeEEEec
Q psy9583 607 -----------------N---TV-DEEIAKKAFHLLNKQGLNIILNTKIHDIKIN-KENVLINYSNKSTNVKTEIITSIF 664 (866)
Q Consensus 607 -----------------~---~~-d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~~~~~~~~ 664 (866)
+ .+ ...+...+.+.+++.|++++.+++|+++..+ ++.+.+.+.. +|. ..++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~-~G~----~~~i~A 177 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRR-GGE----SVTVES 177 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEE-TTE----EEEEEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEec-CCc----eEEEEc
Confidence 0 01 1345666777888899999999999999875 4456666653 442 247999
Q ss_pred cEEEEeecccc
Q psy9583 665 DKLLIAIGRIP 675 (866)
Q Consensus 665 D~vi~a~G~~p 675 (866)
|.||.|+|...
T Consensus 178 dlVV~AdG~~S 188 (591)
T 3i3l_A 178 DFVIDAGGSGG 188 (591)
T ss_dssp SEEEECCGGGC
T ss_pred CEEEECCCCcc
Confidence 99999999865
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00083 Score=77.80 Aligned_cols=98 Identities=13% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc-CC-----Cc-----------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN-FL-----NT----------------------------------- 608 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~-~l-----~~----------------------------------- 608 (866)
.-.|+|||||..|+++|..+++.|.+|.++++.+. +. +.
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~ 100 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLN 100 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEEC
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhcc
Confidence 45899999999999999999999999999998741 10 00
Q ss_pred -------------cc-HHHHHHHHHHHHHc-CCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeec
Q psy9583 609 -------------VD-EEIAKKAFHLLNKQ-GLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 609 -------------~d-~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G 672 (866)
.| ..+...+.+.+++. |++++ +..|+.+..+++.+. +.+ .+|. .+.+|.||+|+|
T Consensus 101 ~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~V~GV~t--~~G~------~i~Ad~VVLATG 171 (641)
T 3cp8_A 101 RSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGKFSSVTV--RSGR------AIQAKAAILACG 171 (641)
T ss_dssp SSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTEEEEEEE--TTSC------EEEEEEEEECCT
T ss_pred cccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCEEEEEEE--CCCc------EEEeCEEEECcC
Confidence 01 13455666677774 99996 458888877666655 444 3565 799999999999
Q ss_pred cccC
Q psy9583 673 RIPN 676 (866)
Q Consensus 673 ~~p~ 676 (866)
..++
T Consensus 172 ~~s~ 175 (641)
T 3cp8_A 172 TFLN 175 (641)
T ss_dssp TCBT
T ss_pred CCCC
Confidence 7654
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00088 Score=73.26 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+...+.+.+++.|++++.+++|++++.+++++.+.. .+| ++.+|.||+|+|...
T Consensus 151 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~--~~g-------~~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 151 AIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIET--ADG-------EYQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEE--SSC-------EEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEE--CCC-------eEEcCEEEEcCCccH
Confidence 344556677788999999999999998776655543 233 589999999999654
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00029 Score=80.16 Aligned_cols=101 Identities=18% Similarity=0.131 Sum_probs=68.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+++++.+ .+. |. +
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~------~~l---------~~---------------------~---- 224 (479)
T 2hqm_A 185 PKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGE------TVL---------RK---------------------F---- 224 (479)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSS------SSC---------TT---------------------S----
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCC------ccc---------cc---------------------c----
Confidence 3679999999999999999999999999999862 210 00 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc-eEEEecEEEEecCCCCcC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARS 546 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~p~~ 546 (866)
..++ ...+...+++.||+++.+..+. +.. +.+...+.+...+| .++.+|.||+|+|.+|..
T Consensus 225 -d~~~--------------~~~l~~~l~~~Gv~i~~~~~v~~i~~-~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 225 -DECI--------------QNTITDHYVKEGINVHKLSKIVKVEK-NVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp -CHHH--------------HHHHHHHHHHHTCEEECSCCEEEEEE-CC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred -CHHH--------------HHHHHHHHHhCCeEEEeCCEEEEEEE-cCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 0000 0113345667799999887655 321 11111245555667 789999999999998875
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00016 Score=82.53 Aligned_cols=99 Identities=11% Similarity=0.060 Sum_probs=67.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+|+++.+ .+- |. .
T Consensus 185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~------~~l---------~~---------------------~---- 224 (482)
T 1ojt_A 185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD------GLM---------QG---------------------A---- 224 (482)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS------SSS---------TT---------------------S----
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC------ccc---------cc---------------------c----
Confidence 3689999999999999999999999999999862 210 00 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCC----ceEEEecEEEEecCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKT----KETITAKYIIIATGSKA 544 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~----g~~i~~d~lViATGs~p 544 (866)
..+ +...+...+++.||+++.+..+. +.. ....+.+...+ ++++.+|.||+|+|..|
T Consensus 225 -~~~--------------~~~~l~~~l~~~gV~i~~~~~v~~i~~---~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p 286 (482)
T 1ojt_A 225 -DRD--------------LVKVWQKQNEYRFDNIMVNTKTVAVEP---KEDGVYVTFEGANAPKEPQRYDAVLVAAGRAP 286 (482)
T ss_dssp -CHH--------------HHHHHHHHHGGGEEEEECSCEEEEEEE---ETTEEEEEEESSSCCSSCEEESCEEECCCEEE
T ss_pred -CHH--------------HHHHHHHHHHhcCCEEEECCEEEEEEE---cCCeEEEEEeccCCCceEEEcCEEEECcCCCc
Confidence 000 01113445677899999886655 322 11233343333 56789999999999988
Q ss_pred cC
Q psy9583 545 RS 546 (866)
Q Consensus 545 ~~ 546 (866)
..
T Consensus 287 ~~ 288 (482)
T 1ojt_A 287 NG 288 (482)
T ss_dssp CG
T ss_pred CC
Confidence 63
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0011 Score=72.64 Aligned_cols=52 Identities=8% Similarity=0.045 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
..+.+.+++.|++++.+++|+++..+++.+. +.. .+| ++.+|.||+|+|...
T Consensus 153 ~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~--~~g-------~i~a~~VV~A~G~~s 205 (382)
T 1y56_B 153 TAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKT--NKG-------IIKTGIVVNATNAWA 205 (382)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEE--TTE-------EEECSEEEECCGGGH
T ss_pred HHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEE--CCc-------EEECCEEEECcchhH
Confidence 3456677788999999999999998776665 443 233 689999999999764
|
| >3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00024 Score=79.04 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=58.2
Q ss_pred CeEEEEEEEe-CCCCeeeCCCeEEEEEec------------------------------------------------cee
Q psy9583 16 SEATLLNWHK-KEGELVVRNENLIDIETD------------------------------------------------KVI 46 (866)
Q Consensus 16 ~~g~i~~w~~-~~G~~v~~g~~l~~ve~~------------------------------------------------k~~ 46 (866)
.+|.|.+++| ++||.|++||+|+++++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 5699999998 999999999999999952 235
Q ss_pred eEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 47 ~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
..|.||++|+|.++.+++|+.|..|++|+.|...
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGM 241 (413)
T ss_dssp EEEECSSSEEEEECCCCTTCEECTTSCSEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCCEECCCCcEEEEeCC
Confidence 6899999999999999999999999999999743
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.36 E-value=9.3e-05 Score=84.71 Aligned_cols=56 Identities=7% Similarity=0.176 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHcC-CEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 611 EEIAKKAFHLLNKQG-LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 611 ~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
..+.+.+.+.+.+.| +++++++.|++|+.+++++.+... +|. ++.+|.||+|+|..
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~--~g~------~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTAR--DGR------EFVAKRVVCTIPLN 311 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEET--TCC------EEEEEEEEECCCGG
T ss_pred HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEEC--CCC------EEEcCEEEECCCHH
Confidence 467788888888888 999999999999987777766553 554 78999999999964
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=82.21 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=38.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPS 443 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~ 443 (866)
+||+|||||++|+++|..|++.|++|+|||+.+.+ ...+|.+...+|...
T Consensus 23 ~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~~~---~~~~g~~~~~~~~~~ 72 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPD---EYSGLRLLNTVAHNA 72 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCCGG---GSTTSCCCCCCCBCH
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCChH---hhcccccccchhccc
Confidence 79999999999999999999999999999997321 112344444455443
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=83.60 Aligned_cols=43 Identities=30% Similarity=0.432 Sum_probs=38.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCC-CeEEEEeccCCCcccccCCCccce
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLG-FKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
+++||+|||||++|++||..|++.| .+|+|+|+. +.+||.|..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~------~~~GG~~~~ 51 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECN------DTPGGLSRS 51 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESS------SSSSGGGCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCC------CCCCCeeee
Confidence 4589999999999999999999998 799999998 688988754
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=9.2e-05 Score=84.30 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=37.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
.+||+|||||++|++||..|++.|++|+|+|+. +.+||.+..
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~------~~~GGr~~t 57 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESS------ARLGGAVGT 57 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSS------SSSBTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcC------CCCCceeee
Confidence 589999999999999999999999999999998 788987643
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=83.72 Aligned_cols=42 Identities=17% Similarity=0.293 Sum_probs=37.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccce
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
++||+|||||++|++||.+|++.| ++|+|+|+. +.+||.+..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~------~~~GG~~~~ 47 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAG------ERLGGKVAT 47 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSS------SSSBTTCCE
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECC------CCCCceeEE
Confidence 489999999999999999999999 999999997 678887644
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0012 Score=78.41 Aligned_cols=53 Identities=17% Similarity=0.362 Sum_probs=41.8
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
..+.+.+++.|++++++++|+++..+++++.+.. .+|. ++.+|.||+|+|...
T Consensus 421 ~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t--~~G~------~i~Ad~VVlAtG~~s 473 (676)
T 3ps9_A 421 RNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNF--AGDQ------QATHSVVVLANGHQI 473 (676)
T ss_dssp HHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEE--TTSC------EEEESEEEECCGGGG
T ss_pred HHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEE--CCCC------EEECCEEEECCCcch
Confidence 3445566678999999999999998887765544 3555 789999999999764
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0003 Score=80.55 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=69.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..+++.|.+|+++++.+ .+. |. +
T Consensus 183 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~------~~l---------~~---------------------~----- 221 (499)
T 1xdi_A 183 DHLIVVGSGVTGAEFVDAYTELGVPVTVVASQD------HVL---------PY---------------------E----- 221 (499)
T ss_dssp SSEEEESCSHHHHHHHHHHHHTTCCEEEECSSS------SSS---------CC---------------------S-----
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC------ccc---------cc---------------------c-----
Confidence 679999999999999999999999999999862 211 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..+ +...+...+++.||+++.++.+. +.. ....+.+...++.++.+|.||+|+|.+|..
T Consensus 222 d~~--------------~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 281 (499)
T 1xdi_A 222 DAD--------------AALVLEESFAERGVRLFKNARAASVTR---TGAGVLVTMTDGRTVEGSHALMTIGSVPNT 281 (499)
T ss_dssp SHH--------------HHHHHHHHHHHTTCEEETTCCEEEEEE---CSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred CHH--------------HHHHHHHHHHHCCCEEEeCCEEEEEEE---eCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 000 01123445778899999886655 322 122356666667789999999999998874
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00039 Score=79.37 Aligned_cols=99 Identities=10% Similarity=0.028 Sum_probs=69.1
Q ss_pred cceeeecCCccHHHHHHHHHHC---CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL---GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~---g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
.+++|||||+.|+.+|..|++. |.+|+++++.+ .+. |.
T Consensus 188 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~------~~l---------~~------------------------ 228 (490)
T 1fec_A 188 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD------MIL---------RG------------------------ 228 (490)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS------SSS---------TT------------------------
T ss_pred CeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCC------Ccc---------cc------------------------
Confidence 6799999999999999999999 99999999862 211 00
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
++. .+...+...+++.||+++.+..+. +.. + ....+.+...+|+++.+|.||+|+|.+|..
T Consensus 229 ----~d~------------~~~~~l~~~l~~~GV~i~~~~~v~~i~~-~-~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 290 (490)
T 1fec_A 229 ----FDS------------ELRKQLTEQLRANGINVRTHENPAKVTK-N-ADGTRHVVFESGAEADYDVVMLAIGRVPRS 290 (490)
T ss_dssp ----SCH------------HHHHHHHHHHHHTTEEEEETCCEEEEEE-C-TTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred ----cCH------------HHHHHHHHHHHhCCCEEEeCCEEEEEEE-c-CCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence 000 011123445778899999987655 322 1 112355555667789999999999998874
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00081 Score=74.77 Aligned_cols=102 Identities=20% Similarity=0.172 Sum_probs=75.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCc-EEEEecCCcCCCc-----c-----------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNFLNT-----V----------------------------------- 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~-Vtli~~~~~~l~~-----~----------------------------------- 609 (866)
.+|+|||||+.|+-+|..|++.|.+ |+++++.+.+.+. +
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g~ 84 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 84 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCCC
Confidence 5799999999999999999999999 9999987653110 0
Q ss_pred ---------------------cHHHHHHHHHHHHH-cC-CEEEeCceEEEEEEcCCeEEEEEee-CCCCccceeEEEecc
Q psy9583 610 ---------------------DEEIAKKAFHLLNK-QG-LNIILNTKIHDIKINKENVLINYSN-KSTNVKTEIITSIFD 665 (866)
Q Consensus 610 ---------------------d~~~~~~l~~~l~~-~G-V~i~~~~~v~~i~~~~~~~~v~~~~-~~g~~~~~~~~~~~D 665 (866)
...+...+.+.+.+ .| ++++++++|++++. ++++.+.+.+ .+|. ..++.+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~----~~~~~ad 159 (410)
T 3c96_A 85 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGK----PQALGAD 159 (410)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSC----EEEEEES
T ss_pred EEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCC----ceEEecC
Confidence 01344555666665 35 68999999999988 6667777753 1242 2478999
Q ss_pred EEEEeeccccCC
Q psy9583 666 KLLIAIGRIPNT 677 (866)
Q Consensus 666 ~vi~a~G~~p~~ 677 (866)
.||.|.|.....
T Consensus 160 ~vV~AdG~~S~v 171 (410)
T 3c96_A 160 VLVGADGIHSAV 171 (410)
T ss_dssp EEEECCCTTCHH
T ss_pred EEEECCCccchh
Confidence 999999986543
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00037 Score=80.23 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=69.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||..|+.+|..|++.|.+|+++++.+ .+. |. .
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~------~~l---------~~---------------------~----- 253 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE------PLK---------LI---------------------K----- 253 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC------TTT---------TC---------------------C-----
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecC------ccc---------cc---------------------c-----
Confidence 679999999999999999999999999999862 110 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccE---EEEEcCCce-EEEecEEEEecCCCCc
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHE---IQIINKTKE-TITAKYIIIATGSKAR 545 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~---v~v~~~~g~-~i~~d~lViATGs~p~ 545 (866)
..+ +...+...+++.||+++.+..+. +.. + .... +.+...+|+ ++.+|.||+|+|.+|.
T Consensus 254 ~~~--------------~~~~l~~~l~~~GV~i~~~~~V~~i~~-~-~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~ 317 (523)
T 1mo9_A 254 DNE--------------TRAYVLDRMKEQGMEIISGSNVTRIEE-D-ANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPR 317 (523)
T ss_dssp SHH--------------HHHHHHHHHHHTTCEEESSCEEEEEEE-C-TTSBEEEEEEEETTEEEEEECSCEEECCCCEEC
T ss_pred cHH--------------HHHHHHHHHHhCCcEEEECCEEEEEEE-c-CCCceEEEEEEECCCcEEEEcCEEEECcCCccC
Confidence 000 01123445778899999887665 321 1 1121 556656676 8999999999999886
Q ss_pred C
Q psy9583 546 S 546 (866)
Q Consensus 546 ~ 546 (866)
.
T Consensus 318 ~ 318 (523)
T 1mo9_A 318 S 318 (523)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00034 Score=79.24 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=66.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.+ .+. |. .
T Consensus 172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~------~~l---------~~---------------------~----- 210 (464)
T 2a8x_A 172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLP------RAL---------PN---------------------E----- 210 (464)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSS---------TT---------------------S-----
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCC------ccc---------cc---------------------c-----
Confidence 679999999999999999999999999999862 210 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcC-Cc--eEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINK-TK--ETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~-~g--~~i~~d~lViATGs~p~~ 546 (866)
..++ ...+...+++.||+++.+..+. +.. ....+.+... ++ .++.+|.||+|+|..|..
T Consensus 211 ~~~~--------------~~~l~~~l~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~ 273 (464)
T 2a8x_A 211 DADV--------------SKEIEKQFKKLGVTILTATKVESIAD---GGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNV 273 (464)
T ss_dssp CHHH--------------HHHHHHHHHHHTCEEECSCEEEEEEE---CSSCEEEEEESSSCEEEEEESEEEECSCEEECC
T ss_pred CHHH--------------HHHHHHHHHHcCCEEEeCcEEEEEEE---cCCeEEEEEEcCCceEEEEcCEEEECCCCCccC
Confidence 0000 1113345667799999987665 322 1122334321 34 689999999999998864
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00044 Score=79.02 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=68.8
Q ss_pred cceeeecCCccHHHHHHHHHHC---CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL---GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~---g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
.+++|||||+.|+.+|..|++. |.+|++|++.+ .+- |. +
T Consensus 192 ~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~------~~l---------~~---------------------~-- 233 (495)
T 2wpf_A 192 RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNN------LIL---------RG---------------------F-- 233 (495)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS------SSC---------TT---------------------S--
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCC------ccc---------cc---------------------c--
Confidence 6799999999999999999999 99999999862 110 00 0
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
..+ +...+...+++.||+++.+..+. +.. + ....+.+...+|+++.+|.||+|+|.+|..
T Consensus 234 ---d~~--------------~~~~l~~~l~~~GV~i~~~~~v~~i~~-~-~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 294 (495)
T 2wpf_A 234 ---DET--------------IREEVTKQLTANGIEIMTNENPAKVSL-N-TDGSKHVTFESGKTLDVDVVMMAIGRIPRT 294 (495)
T ss_dssp ---CHH--------------HHHHHHHHHHHTTCEEEESCCEEEEEE-C-TTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred ---CHH--------------HHHHHHHHHHhCCCEEEeCCEEEEEEE-c-CCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence 000 01123445778899999987655 322 1 112345555667789999999999988764
|
| >3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00025 Score=64.22 Aligned_cols=45 Identities=27% Similarity=0.338 Sum_probs=38.5
Q ss_pred EEEEEEEe-CCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEee
Q psy9583 18 ATLLNWHK-KEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62 (866)
Q Consensus 18 g~i~~w~~-~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~ 62 (866)
|.|+-... ++|++|++||+++.||++|+..+|.||.+|+|.+++-
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~ 94 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT 94 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence 34444433 8999999999999999999999999999999998853
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00029 Score=80.26 Aligned_cols=104 Identities=19% Similarity=0.332 Sum_probs=73.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCC--C-ccc----------HHHHHHHHHHHHH-cCCEEEeCceE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFL--N-TVD----------EEIAKKAFHLLNK-QGLNIILNTKI 634 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l--~-~~d----------~~~~~~l~~~l~~-~GV~i~~~~~v 634 (866)
.+++|||+|+.|+.+|..|++. |.+|+++++.+.+. + .++ .++.....+.+.+ .|++++.++.+
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~~v 116 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRHEV 116 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCCEE
Confidence 5899999999999999999986 88999999987542 1 111 1111122344544 49999999999
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..+..+++.+.+... .+|. ..++.+|.+|+|+|.+|....
T Consensus 117 ~~i~~~~~~v~v~~~-~~g~----~~~~~~d~lviAtG~~p~~p~ 156 (480)
T 3cgb_A 117 TKVDTEKKIVYAEHT-KTKD----VFEFSYDRLLIATGVRPVMPE 156 (480)
T ss_dssp EEEETTTTEEEEEET-TTCC----EEEEECSEEEECCCEEECCCC
T ss_pred EEEECCCCEEEEEEc-CCCc----eEEEEcCEEEECCCCcccCCC
Confidence 999876665554321 2332 236899999999999887653
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00054 Score=77.74 Aligned_cols=100 Identities=14% Similarity=0.212 Sum_probs=67.0
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.+ .+. |. .
T Consensus 178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~------~~l---------~~---------------------~----- 216 (470)
T 1dxl_A 178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS------EIV---------PT---------------------M----- 216 (470)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS------SSS---------TT---------------------S-----
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC------ccc---------cc---------------------c-----
Confidence 679999999999999999999999999999862 211 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcC-C--ceEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINK-T--KETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~-~--g~~i~~d~lViATGs~p~~ 546 (866)
..+ +...+...+++.||+++.++.+. +.. +.....+.+... + +.++.+|.||+|+|..|..
T Consensus 217 ~~~--------------~~~~l~~~l~~~gv~i~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~ 281 (470)
T 1dxl_A 217 DAE--------------IRKQFQRSLEKQGMKFKLKTKVVGVDT-SGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFT 281 (470)
T ss_dssp CHH--------------HHHHHHHHHHHSSCCEECSEEEEEEEC-SSSSEEEEEEESSSCCCEEEEESEEECCCCEEECC
T ss_pred cHH--------------HHHHHHHHHHHcCCEEEeCCEEEEEEE-cCCeEEEEEEecCCCcceEEECCEEEECCCCCcCC
Confidence 000 01113445778899999987766 322 111122333321 2 3689999999999998863
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0014 Score=72.61 Aligned_cols=54 Identities=20% Similarity=0.146 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+...+.+.+++.|++++++++|+++..+++.+ .+.. .+| ++.+|.||+|+|...
T Consensus 176 ~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~--~~g-------~~~a~~vV~a~G~~s 230 (405)
T 2gag_B 176 VAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKT--TRG-------TIHAGKVALAGAGHS 230 (405)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEE--TTC-------CEEEEEEEECCGGGH
T ss_pred HHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEe--CCc-------eEECCEEEECCchhH
Confidence 44456667788899999999999998876553 3433 233 588999999999754
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00084 Score=76.27 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=68.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||+|+.|+.+|..|++.|.+|+++++.+ .+. |. .
T Consensus 180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~------~~l---------~~---------------------~---- 219 (476)
T 3lad_A 180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD------KFL---------PA---------------------V---- 219 (476)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS------SSS---------TT---------------------S----
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC------CcC---------cc---------------------c----
Confidence 3679999999999999999999999999999862 211 00 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCc-eEEEecEEEEecCCCCcC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK-ETITAKYIIIATGSKARS 546 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g-~~i~~d~lViATGs~p~~ 546 (866)
..+ +...+...+++.||+++.+..+. +.. +.....+.+.+.++ ..+.+|.||+|+|..|..
T Consensus 220 -~~~--------------~~~~l~~~l~~~Gv~v~~~~~v~~i~~-~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~ 282 (476)
T 3lad_A 220 -DEQ--------------VAKEAQKILTKQGLKILLGARVTGTEV-KNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT 282 (476)
T ss_dssp -CHH--------------HHHHHHHHHHHTTEEEEETCEEEEEEE-CSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred -CHH--------------HHHHHHHHHHhCCCEEEECCEEEEEEE-cCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence 000 11123445778899999886655 322 11222344443334 679999999999988864
|
| >3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0003 Score=76.78 Aligned_cols=65 Identities=15% Similarity=0.296 Sum_probs=58.5
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecce--------------------------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDKV-------------------------------------------------- 45 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~-------------------------------------------------- 45 (866)
..|+|.++++++||.|++||+|+++++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999987531
Q ss_pred --------------------------eeEEecCCCeEEEEEeecCCCEEec-CCEEEEEecC
Q psy9583 46 --------------------------ILELPAPQDGIINKIIITDGSIVTS-NQVIALIDTD 80 (866)
Q Consensus 46 --------------------------~~~i~~~~~G~~~~~~~~~g~~v~~-g~~l~~~~~~ 80 (866)
...|.||++|+|.++.+.+|+.|.. |++|+.+...
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~v~~~g~~l~~i~~~ 205 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAYWNDTTASLMTVADL 205 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCEECCSSCCSEEEECC
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCceeCCCCcceEEEecC
Confidence 3579999999999999999999999 9999999754
|
| >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.26 E-value=9.6e-05 Score=77.58 Aligned_cols=65 Identities=22% Similarity=0.343 Sum_probs=57.4
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecc---------------------------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDK--------------------------------------------------- 44 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k--------------------------------------------------- 44 (866)
..|+|.+++|++||.|++||+|+++++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999998741
Q ss_pred --------------------eeeEEecCCCeEEEEEeecCCCEEecC--CEEEEEecC
Q psy9583 45 --------------------VILELPAPQDGIINKIIITDGSIVTSN--QVIALIDTD 80 (866)
Q Consensus 45 --------------------~~~~i~~~~~G~~~~~~~~~g~~v~~g--~~l~~~~~~ 80 (866)
....|.||++|+|.++.+++|+.|..| ++|+.|...
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~v~~g~~~~l~~i~~~ 166 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQL 166 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCEECTTCSSCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCEEcCCCCceeEEEecC
Confidence 124799999999999999999999999 689998754
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0011 Score=76.89 Aligned_cols=97 Identities=16% Similarity=0.212 Sum_probs=72.2
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc-CC-----C------------------c------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN-FL-----N------------------T------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~-~l-----~------------------~------------------ 608 (866)
-.|+|||||..|+++|..+++.|.+|.++++.+. +. + .
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~ 108 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA 108 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence 4799999999999999999999999999998631 10 0 0
Q ss_pred ------------cc-HHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 609 ------------VD-EEIAKKAFHLLNK-QGLNIILNTKIHDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 609 ------------~d-~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
.| ..+...+.+.+++ .|++++ +..|+.+..+++.+ .+.+ .+|. .+.+|.||+|+|.
T Consensus 109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t--~dG~------~I~Ad~VVLATGt 179 (651)
T 3ces_A 109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVT--QMGL------KFRAKAVVLTVGT 179 (651)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEE--TTSE------EEEEEEEEECCST
T ss_pred ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEE--CCCC------EEECCEEEEcCCC
Confidence 01 1345566677777 699994 67899998766654 3433 2554 7999999999998
Q ss_pred ccC
Q psy9583 674 IPN 676 (866)
Q Consensus 674 ~p~ 676 (866)
.+.
T Consensus 180 ~s~ 182 (651)
T 3ces_A 180 FLD 182 (651)
T ss_dssp TTC
T ss_pred Ccc
Confidence 654
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0008 Score=76.29 Aligned_cols=100 Identities=18% Similarity=0.321 Sum_probs=65.8
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.+ .+. |. +
T Consensus 175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~------~~l---------~~---------------------~----- 213 (468)
T 2qae_A 175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFAP------RCA---------PT---------------------L----- 213 (468)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSS---------TT---------------------S-----
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCEEEEEecCC------ccc---------cc---------------------C-----
Confidence 679999999999999999999999999999862 211 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHH-HhCCcEEEEeEEEE-eccccCcccEEEEEcCCc--eEEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLF-KKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p~~ 546 (866)
+.+ +...+...+ ++.||+++.+..+. +.. +.....+.+...+| .++.+|.||+|+|..|..
T Consensus 214 d~~--------------~~~~l~~~l~~~~gv~i~~~~~v~~i~~-~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~ 278 (468)
T 2qae_A 214 DED--------------VTNALVGALAKNEKMKFMTSTKVVGGTN-NGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFT 278 (468)
T ss_dssp CHH--------------HHHHHHHHHHHHTCCEEECSCEEEEEEE-CSSSEEEEEECC---EEEEEESEEEECSCEEECC
T ss_pred CHH--------------HHHHHHHHHhhcCCcEEEeCCEEEEEEE-cCCeEEEEEEcCCCceEEEECCEEEECCCcccCC
Confidence 000 011234456 78899999986665 322 11112233322244 679999999999998864
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00088 Score=76.41 Aligned_cols=98 Identities=20% Similarity=0.224 Sum_probs=65.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+++++.+ .+....
T Consensus 174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~------~~l~~~---------------------------------- 213 (492)
T 3ic9_A 174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSG------SVANLQ---------------------------------- 213 (492)
T ss_dssp CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTT------CCTTCC----------------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC------cccccC----------------------------------
Confidence 3679999999999999999999999999999862 221000
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc--CCc--eEEEecEEEEecCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN--KTK--ETITAKYIIIATGSKA 544 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~--~~g--~~i~~d~lViATGs~p 544 (866)
..++ ...+...+++. |+++.+..+. +.. ....+.+.. .+| .++.+|.||+|+|..|
T Consensus 214 -d~~~--------------~~~l~~~l~~~-V~i~~~~~v~~i~~---~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p 274 (492)
T 3ic9_A 214 -DEEM--------------KRYAEKTFNEE-FYFDAKARVISTIE---KEDAVEVIYFDKSGQKTTESFQYVLAATGRKA 274 (492)
T ss_dssp -CHHH--------------HHHHHHHHHTT-SEEETTCEEEEEEE---CSSSEEEEEECTTCCEEEEEESEEEECSCCEE
T ss_pred -CHHH--------------HHHHHHHHhhC-cEEEECCEEEEEEE---cCCEEEEEEEeCCCceEEEECCEEEEeeCCcc
Confidence 0000 11123345556 8888876655 221 112333433 245 6899999999999988
Q ss_pred cC
Q psy9583 545 RS 546 (866)
Q Consensus 545 ~~ 546 (866)
..
T Consensus 275 ~~ 276 (492)
T 3ic9_A 275 NV 276 (492)
T ss_dssp SC
T ss_pred CC
Confidence 74
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0018 Score=74.86 Aligned_cols=98 Identities=15% Similarity=0.272 Sum_probs=72.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc-CC-----C------------------c------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN-FL-----N------------------T------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~-~l-----~------------------~------------------ 608 (866)
-.|+|||||..|+++|..+++.|.+|.++++... +. + .
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~ 107 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT 107 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence 4799999999999999999999999999998631 10 0 0
Q ss_pred ------------cc-HHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 609 ------------VD-EEIAKKAFHLLNK-QGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 609 ------------~d-~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
.| ..+...+.+.+++ .|++++ +..|+++..+++.+. +.+ .+|. .+.+|.||+|+|.
T Consensus 108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t--~dG~------~i~AdaVVLATG~ 178 (637)
T 2zxi_A 108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRT--NLGV------EYKTKAVVVTTGT 178 (637)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEE--TTSC------EEECSEEEECCTT
T ss_pred ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEE--CCCc------EEEeCEEEEccCC
Confidence 00 1345556677777 599995 678999887766553 443 3565 7999999999998
Q ss_pred ccCC
Q psy9583 674 IPNT 677 (866)
Q Consensus 674 ~p~~ 677 (866)
.++.
T Consensus 179 ~s~~ 182 (637)
T 2zxi_A 179 FLNG 182 (637)
T ss_dssp CBTC
T ss_pred CccC
Confidence 6654
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=82.77 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=39.0
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
+...+||+|||||++|++||..|++.|++|+|+|+. +.+||.+.
T Consensus 30 ~~~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~------~~~gg~~~ 73 (498)
T 2iid_A 30 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS------ERPGGRVR 73 (498)
T ss_dssp CSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS------SSSBTTCC
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC------CCCCCcee
Confidence 334689999999999999999999999999999998 68888763
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00063 Score=77.11 Aligned_cols=100 Identities=13% Similarity=0.116 Sum_probs=69.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-------------------------------ccH--------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-------------------------------VDE-------- 611 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------~d~-------- 611 (866)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.+... ++.
T Consensus 5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
T 3l8k_A 5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD 84 (466)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence 36999999999999999999999999999977654211 000
Q ss_pred H---HH--HHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 612 E---IA--KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 612 ~---~~--~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
. +. ..+.+.+++.|++++.+ .+..+. .+.+.+.. .+|. ..++.+|.+++|+|.+|....
T Consensus 85 ~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id--~~~~~V~~--~~g~----~~~~~~d~lviAtG~~p~~p~ 148 (466)
T 3l8k_A 85 YVQELRFKQHKRNMSQYETLTFYKG-YVKIKD--PTHVIVKT--DEGK----EIEAETRYMIIASGAETAKLR 148 (466)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEESE-EEEEEE--TTEEEEEE--TTSC----EEEEEEEEEEECCCEEECCCC
T ss_pred hheeccccchHHHHHHhCCCEEEEe-EEEEec--CCeEEEEc--CCCc----EEEEecCEEEECCCCCccCCC
Confidence 0 01 33444556679999877 565554 34444444 3554 123999999999999887654
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.001 Score=75.90 Aligned_cols=101 Identities=23% Similarity=0.286 Sum_probs=67.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+++++.+ .+... .
T Consensus 198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~------~~l~~------~---------------------------- 237 (491)
T 3urh_A 198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLD------TILGG------M---------------------------- 237 (491)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS------SSSSS------S----------------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccc------ccccc------C----------------------------
Confidence 3679999999999999999999999999999862 21100 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCc--eEEEecEEEEecCCCCc
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTK--ETITAKYIIIATGSKAR 545 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g--~~i~~d~lViATGs~p~ 545 (866)
.. .+...+...+++.||+++.+..+. +.. +.....+.+.. .+| .++.+|.||+|+|..|.
T Consensus 238 -d~--------------~~~~~l~~~l~~~gV~v~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 301 (491)
T 3urh_A 238 -DG--------------EVAKQLQRMLTKQGIDFKLGAKVTGAVK-SGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPS 301 (491)
T ss_dssp -CH--------------HHHHHHHHHHHHTTCEEECSEEEEEEEE-ETTEEEEEEEETTSCCCEEEEESEEEECCCCEEC
T ss_pred -CH--------------HHHHHHHHHHHhCCCEEEECCeEEEEEE-eCCEEEEEEEecCCCceEEEEcCEEEEeeCCccC
Confidence 00 001123445777899999887665 322 11122344432 113 68999999999998876
Q ss_pred C
Q psy9583 546 S 546 (866)
Q Consensus 546 ~ 546 (866)
.
T Consensus 302 ~ 302 (491)
T 3urh_A 302 T 302 (491)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00034 Score=75.73 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=56.8
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecc---------------------------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDK--------------------------------------------------- 44 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k--------------------------------------------------- 44 (866)
..|+|.+++|++||.|++||+|+++++..
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 46999999999999999999999998741
Q ss_pred ----------------------------------eeeEEecCCCeEEEEEeecCCCEEecCCE---EEEEecC
Q psy9583 45 ----------------------------------VILELPAPQDGIINKIIITDGSIVTSNQV---IALIDTD 80 (866)
Q Consensus 45 ----------------------------------~~~~i~~~~~G~~~~~~~~~g~~v~~g~~---l~~~~~~ 80 (866)
....|.||++|+|.++.+.+|+.|..|++ |+.+...
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADM 190 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCEEecCCCCceEEEEecC
Confidence 01459999999999999999999999987 8888643
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00053 Score=78.14 Aligned_cols=99 Identities=14% Similarity=0.142 Sum_probs=68.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||+|+.|+..|..+++.|.+|+++++.+ .+. |. +
T Consensus 191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~------~~l---------~~---------------------~---- 230 (484)
T 3o0h_A 191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD------LIL---------RN---------------------F---- 230 (484)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSS---------TT---------------------S----
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC------ccc---------cc---------------------c----
Confidence 3689999999999999999999999999999862 110 00 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
.. .+...+...+++.||+++.+..+. +.. ....+.+...+++++.+|.||+|+|..|..
T Consensus 231 -~~--------------~~~~~l~~~l~~~Gv~i~~~~~V~~i~~---~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~ 290 (484)
T 3o0h_A 231 -DY--------------DLRQLLNDAMVAKGISIIYEATVSQVQS---TENCYNVVLTNGQTICADRVMLATGRVPNT 290 (484)
T ss_dssp -CH--------------HHHHHHHHHHHHHTCEEESSCCEEEEEE---CSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred -CH--------------HHHHHHHHHHHHCCCEEEeCCEEEEEEe---eCCEEEEEECCCcEEEcCEEEEeeCCCcCC
Confidence 00 001113345667799999876555 322 223355666677889999999999988764
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00064 Score=77.04 Aligned_cols=97 Identities=14% Similarity=0.156 Sum_probs=67.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+++++.+ .+- | .
T Consensus 176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~------~~l---------~----------------------~---- 214 (467)
T 1zk7_A 176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNT------LFF---------R----------------------E---- 214 (467)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC------TTT---------T----------------------S----
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECC------ccC---------C----------------------C----
Confidence 3689999999999999999999999999999862 110 0 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~ 546 (866)
+ . .+...+...+++.||+++.+..+. +.. ....+.+..+ +.++.+|.||+|+|.+|..
T Consensus 215 ---~-~-----------~~~~~l~~~l~~~Gv~i~~~~~v~~i~~---~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~ 273 (467)
T 1zk7_A 215 ---D-P-----------AIGEAVTAAFRAEGIEVLEHTQASQVAH---MDGEFVLTTT-HGELRADKLLVATGRTPNT 273 (467)
T ss_dssp ---C-H-----------HHHHHHHHHHHHTTCEEETTCCEEEEEE---ETTEEEEEET-TEEEEESEEEECSCEEESC
T ss_pred ---C-H-----------HHHHHHHHHHHhCCCEEEcCCEEEEEEE---eCCEEEEEEC-CcEEEcCEEEECCCCCcCC
Confidence 0 0 011123445777899999876554 322 2233445444 4579999999999998763
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00031 Score=80.27 Aligned_cols=108 Identities=22% Similarity=0.246 Sum_probs=71.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC--Cc--------ccH-HHHHHHHHHH--HHcCCEEEeCceEEEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL--NT--------VDE-EIAKKAFHLL--NKQGLNIILNTKIHDI 637 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l--~~--------~d~-~~~~~l~~~l--~~~GV~i~~~~~v~~i 637 (866)
++|+|||||+.|+.+|..|.+.+.+|++|++++.+. |. +++ ++...+.+.+ .+.+++++. ..+++|
T Consensus 43 prVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~-~~v~~I 121 (502)
T 4g6h_A 43 PNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYE-AEATSI 121 (502)
T ss_dssp CEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEE-EEEEEE
T ss_pred CCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEE-EEEEEE
Confidence 589999999999999999999999999999987542 11 111 1111222322 234677775 467888
Q ss_pred EEcCCeEEEEEeeC----------CCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 638 KINKENVLINYSNK----------STNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 638 ~~~~~~~~v~~~~~----------~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..+...+.+..... .+....+..++.+|.+|+|+|.+|+...
T Consensus 122 D~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ 173 (502)
T 4g6h_A 122 NPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFG 173 (502)
T ss_dssp EGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTT
T ss_pred EhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCC
Confidence 77666655432110 0111123458999999999999998754
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00048 Score=78.66 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=74.7
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC----------cc---cHHHHHHHHHHHHHcCCEEEeCceEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN----------TV---DEEIAKKAFHLLNKQGLNIILNTKIHD 636 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~----------~~---d~~~~~~l~~~l~~~GV~i~~~~~v~~ 636 (866)
..+|+|||+|+.|+.+|..|++. .+|+++++.+.+.. .+ ..++...+.+.+ +.|+++++++.+.+
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~ 185 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALG 185 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECC
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEE
Confidence 35799999999999999999999 99999999876521 11 223334444444 56999999999988
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+..++..+.+.... ++. ...+.+|.+++|+|..|....
T Consensus 186 i~~~~~~~~~~~~~-~~~----~~~~~~d~lvlAtGa~~~~~~ 223 (493)
T 1y56_A 186 VFDKGEYFLVPVVR-GDK----LIEILAKRVVLATGAIDSTML 223 (493)
T ss_dssp CEECSSSEEEEEEE-TTE----EEEEEESCEEECCCEEECCCC
T ss_pred EEcCCcEEEEEEec-CCe----EEEEECCEEEECCCCCccCCC
Confidence 88766555443321 332 236899999999999887643
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00084 Score=76.60 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=67.5
Q ss_pred ccceeeecCCccHHHHHHHHHH----CCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ----LGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~----~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
..+|+|||||+.|+.+|..|++ .|.+|+++++.+ .+-+. .+|.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~------~~~~~-----~l~~---------------------- 226 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK------GNMGK-----ILPE---------------------- 226 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS------STTTT-----TSCH----------------------
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc------ccccc-----cCCH----------------------
Confidence 3689999999999999999887 478999998751 11000 0000
Q ss_pred cccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 466 NTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
.+...+...+++.||+++.+..+. +.. ....+.+...+|+++.+|.||+|+|..|
T Consensus 227 ---------------------~~~~~~~~~l~~~GV~v~~~~~V~~i~~---~~~~~~v~l~dG~~i~aD~Vv~a~G~~p 282 (493)
T 1m6i_A 227 ---------------------YLSNWTMEKVRREGVKVMPNAIVQSVGV---SSGKLLIKLKDGRKVETDHIVAAVGLEP 282 (493)
T ss_dssp ---------------------HHHHHHHHHHHTTTCEEECSCCEEEEEE---ETTEEEEEETTSCEEEESEEEECCCEEE
T ss_pred ---------------------HHHHHHHHHHHhcCCEEEeCCEEEEEEe---cCCeEEEEECCCCEEECCEEEECCCCCc
Confidence 001112345778899999886554 321 1234456556778899999999999887
Q ss_pred cC
Q psy9583 545 RS 546 (866)
Q Consensus 545 ~~ 546 (866)
..
T Consensus 283 n~ 284 (493)
T 1m6i_A 283 NV 284 (493)
T ss_dssp CC
T ss_pred cH
Confidence 63
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0038 Score=68.91 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 616 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
.+.+.+++.|++++++++|+++..+++++.+.. .++ ++.+|.||+|+|..
T Consensus 158 ~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t--~~g-------~i~a~~VV~A~G~~ 207 (397)
T 2oln_A 158 ALFTLAQAAGATLRAGETVTELVPDADGVSVTT--DRG-------TYRAGKVVLACGPY 207 (397)
T ss_dssp HHHHHHHHTTCEEEESCCEEEEEEETTEEEEEE--SSC-------EEEEEEEEECCGGG
T ss_pred HHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEE--CCC-------EEEcCEEEEcCCcC
Confidence 344556678999999999999998777765533 233 68999999999975
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0018 Score=70.88 Aligned_cols=51 Identities=10% Similarity=0.058 Sum_probs=39.3
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
..+.+.+++.|++++++++|+++..+++++.+.. .+| ++.+|.||+|+|..
T Consensus 158 ~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t--~~g-------~i~a~~VV~A~G~~ 208 (381)
T 3nyc_A 158 QGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRC--DAG-------SYRAAVLVNAAGAW 208 (381)
T ss_dssp HHHHHHHHHTTCEEESSCCCCEEEEETTEEEEEC--SSE-------EEEESEEEECCGGG
T ss_pred HHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEe--CCC-------EEEcCEEEECCChh
Confidence 3455666778999999999999998877755443 233 68999999999964
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=74.82 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=66.9
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.+ .+. |. .
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~------~~l---------~~---------------------~----- 226 (478)
T 3dk9_A 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD------KVL---------RS---------------------F----- 226 (478)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSC---------TT---------------------S-----
T ss_pred ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCC------ccc---------cc---------------------c-----
Confidence 679999999999999999999999999999862 210 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCC-------ceEEEecEEEEecCC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKT-------KETITAKYIIIATGS 542 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~-------g~~i~~d~lViATGs 542 (866)
..++ ...+...+++.||+++.+..+. +.. +.+...+.+...+ +..+.+|.||+|+|.
T Consensus 227 d~~~--------------~~~~~~~l~~~gv~i~~~~~v~~i~~-~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~ 291 (478)
T 3dk9_A 227 DSMI--------------STNCTEELENAGVEVLKFSQVKEVKK-TLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGR 291 (478)
T ss_dssp CHHH--------------HHHHHHHHHHTTCEEETTEEEEEEEE-CSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCE
T ss_pred CHHH--------------HHHHHHHHHHCCCEEEeCCEEEEEEE-cCCCcEEEEEEccCCCCcccceEEEcCEEEEeecc
Confidence 0000 1123445778899999887665 321 1111134444332 267999999999998
Q ss_pred CCcC
Q psy9583 543 KARS 546 (866)
Q Consensus 543 ~p~~ 546 (866)
.|..
T Consensus 292 ~p~~ 295 (478)
T 3dk9_A 292 VPNT 295 (478)
T ss_dssp EESC
T ss_pred ccCC
Confidence 8764
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00027 Score=80.29 Aligned_cols=43 Identities=30% Similarity=0.430 Sum_probs=37.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCC-eEEEEeccCCCcccccCCCccce
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~~~~~~~~~~GG~~~~ 437 (866)
+.+||+|||||++|+++|..|++.|+ +|+|+|+. +.+||.|..
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~------~~~gg~~~~ 46 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEAT------DHIGGRMHK 46 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSS------SSSBTTSCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCC------CCCCCceee
Confidence 35899999999999999999999998 89999998 678887743
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0021 Score=73.81 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=30.0
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.
T Consensus 211 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~ 242 (519)
T 3qfa_A 211 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 242 (519)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence 56999999999999999999999999999874
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0023 Score=72.85 Aligned_cols=100 Identities=17% Similarity=0.167 Sum_probs=65.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++. ..+.. +
T Consensus 186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~------~~l~~-------------------------------~----- 223 (488)
T 3dgz_A 186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRS------IPLRG-------------------------------F----- 223 (488)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS------CSSTT-------------------------------S-----
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEcC------ccccc-------------------------------C-----
Confidence 57999999999999999999999999999875 11100 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCce--EEEecEEEEecCCCCcC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTKE--TITAKYIIIATGSKARS 546 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g~--~i~~d~lViATGs~p~~ 546 (866)
+.+ +...+...+++.||+++.+..+. +...+.....+.+.. .+++ ++.+|.||+|+|..|..
T Consensus 224 d~~--------------~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~ 289 (488)
T 3dgz_A 224 DQQ--------------MSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPET 289 (488)
T ss_dssp CHH--------------HHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESC
T ss_pred CHH--------------HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCccc
Confidence 000 11123445778899999987655 321111112344433 2243 58999999999988763
|
| >3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00078 Score=61.97 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=35.0
Q ss_pred CCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEee
Q psy9583 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62 (866)
Q Consensus 26 ~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~ 62 (866)
++|+.|++||+++.||+.|+..+|.||.+|+|.+++-
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~ 104 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS 104 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence 7999999999999999999999999999999987753
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00049 Score=77.70 Aligned_cols=89 Identities=10% Similarity=0.212 Sum_probs=68.8
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcC--CcEEEEecCCcCC--------Cc--ccHHHHHHHHHHHHHcCCEEEeCceEEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFL--------NT--VDEEIAKKAFHLLNKQGLNIILNTKIHDI 637 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g--~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~~i 637 (866)
+++++|||+|+.|+.+|..|.+.| .+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+.
T Consensus 6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~-- 83 (460)
T 1cjc_A 6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG-- 83 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT--
T ss_pred CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe--
Confidence 578999999999999999999998 8999999987764 22 234566777888888999999987662
Q ss_pred EEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 638 KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 638 ~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
.. +.+. + ..+.+|.||+|||..|
T Consensus 84 ----~~--V~~~--~-------~~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 84 ----RD--VTVQ--E-------LQDAYHAVVLSYGAED 106 (460)
T ss_dssp ----TT--BCHH--H-------HHHHSSEEEECCCCCE
T ss_pred ----eE--EEec--c-------ceEEcCEEEEecCcCC
Confidence 11 2121 1 1467999999999885
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0011 Score=78.68 Aligned_cols=87 Identities=24% Similarity=0.363 Sum_probs=68.0
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc---------c--cHHHHHHHHHHHHHcCCEEEeCceEEEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT---------V--DEEIAKKAFHLLNKQGLNIILNTKIHDIK 638 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~---------~--d~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 638 (866)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+... . ..+....+.+.+++.||++++++.+..
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~-- 450 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA-- 450 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS--
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecH--
Confidence 578999999999999999999999999999998765211 1 124455667778889999998876521
Q ss_pred EcCCeEEEEEeeCCCCccceeEEE-eccEEEEeeccccCCCC
Q psy9583 639 INKENVLINYSNKSTNVKTEIITS-IFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 639 ~~~~~~~v~~~~~~g~~~~~~~~~-~~D~vi~a~G~~p~~~~ 679 (866)
. .+ .+|.+|+|||.+|....
T Consensus 451 ---------------~------~~~~~d~lviAtG~~p~~~~ 471 (671)
T 1ps9_A 451 ---------------D------QLQAFDETILASGIVPRTPP 471 (671)
T ss_dssp ---------------S------SSCCSSEEEECCCEEECCCC
T ss_pred ---------------H------HhhcCCEEEEccCCCcCCCC
Confidence 0 23 78999999999987654
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0013 Score=74.43 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=68.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||+|+.|+..|..+++.|.+|+++++.+ .+. |. +
T Consensus 170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~------~~l---------~~---------------------~---- 209 (463)
T 4dna_A 170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGK------EIL---------SR---------------------F---- 209 (463)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSS---------TT---------------------S----
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC------ccc---------cc---------------------c----
Confidence 3679999999999999999999999999999862 110 00 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEE-cCCceEEEecEEEEecCCCCcC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQII-NKTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~-~~~g~~i~~d~lViATGs~p~~ 546 (866)
..+ +...+...+++.||+++.+..+. +.. .....+.+. .++|+ +.+|.||+|+|..|..
T Consensus 210 -~~~--------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~--~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~ 270 (463)
T 4dna_A 210 -DQD--------------MRRGLHAAMEEKGIRILCEDIIQSVSA--DADGRRVATTMKHGE-IVADQVMLALGRMPNT 270 (463)
T ss_dssp -CHH--------------HHHHHHHHHHHTTCEEECSCCEEEEEE--CTTSCEEEEESSSCE-EEESEEEECSCEEESC
T ss_pred -CHH--------------HHHHHHHHHHHCCCEEECCCEEEEEEE--cCCCEEEEEEcCCCe-EEeCEEEEeeCcccCC
Confidence 000 01123445778899999876555 322 112335666 66777 9999999999988764
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0026 Score=72.33 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=65.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+++++. ..+.+ .
T Consensus 188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~------~~l~~-------~----------------------------- 225 (483)
T 3dgh_A 188 GKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS------IVLRG-------F----------------------------- 225 (483)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS------CSSTT-------S-----------------------------
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC------CCCcc-------c-----------------------------
Confidence 57999999999999999999999999999874 11100 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCC-c--eEEEecEEEEecCCCCc
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKT-K--ETITAKYIIIATGSKAR 545 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~-g--~~i~~d~lViATGs~p~ 545 (866)
..+ +...+...+++.||+++.+..+. +...+.....+.+.... + .++.+|.||+|+|..|.
T Consensus 226 d~~--------------~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~ 290 (483)
T 3dgh_A 226 DQQ--------------MAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL 290 (483)
T ss_dssp CHH--------------HHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred CHH--------------HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence 000 11123445778899999987665 32111111223333221 2 47999999999998876
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0003 Score=76.48 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=30.4
Q ss_pred cceeeecCCccHHHHHHHHHHCC------CeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLG------FKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g------~~V~liek~ 422 (866)
+||+|||||++|+++|++|++.| .+|+|+|+.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~ 38 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADR 38 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECC
Confidence 48999999999999999999998 999999997
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0039 Score=72.59 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=76.5
Q ss_pred CeEEEECCcHHHHHHHHHHHhc------CCcEEEEecCCcCCCc------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL------GSEVTILEMSSNFLNT------------------------------------ 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~------g~~Vtli~~~~~~l~~------------------------------------ 608 (866)
-+|+|||||+.|+-+|..|++. |.+|+++++.+.+...
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 4799999999999999999999 9999999986542100
Q ss_pred ---------c---c--------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEE-EEEee----CCCCcc
Q psy9583 609 ---------V---D--------------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKE-NVL-INYSN----KSTNVK 656 (866)
Q Consensus 609 ---------~---d--------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~-v~~~~----~~g~~~ 656 (866)
+ + ..+...+.+.+++.|+++++++.++++..+++ .+. +.+.+ .+|...
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~ 195 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPK 195 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEE
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcc
Confidence 0 0 14556677778888999999999999987654 343 55432 133200
Q ss_pred ---ceeEEEeccEEEEeeccccC
Q psy9583 657 ---TEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 657 ---~~~~~~~~D~vi~a~G~~p~ 676 (866)
.+..++.+|.||.|.|....
T Consensus 196 ~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 196 TTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EEEECCCEEECSEEEECCCTTCH
T ss_pred cccCCceEEECCEEEEeeCCCch
Confidence 00137999999999998764
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.004 Score=68.76 Aligned_cols=97 Identities=24% Similarity=0.223 Sum_probs=69.3
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-------ccHHHH------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-------VDEEIA------------------------------ 614 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-------~d~~~~------------------------------ 614 (866)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+... +.+...
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN 82 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence 7999999999999999999999999999987654210 111111
Q ss_pred -----------------------------HHHHHHHHH-cCCEEEeCceEEEEEEcCC-eEEEEEeeCCCCccceeEEEe
Q psy9583 615 -----------------------------KKAFHLLNK-QGLNIILNTKIHDIKINKE-NVLINYSNKSTNVKTEIITSI 663 (866)
Q Consensus 615 -----------------------------~~l~~~l~~-~GV~i~~~~~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~ 663 (866)
..+.+.|.+ .+..+++++++++++..++ .+.+.+. +|. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~~~~v~~~~~~~~~~v~v~~~--dG~------~~~ 154 (412)
T 4hb9_A 83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQWNKTFVRYEHIENGGIKIFFA--DGS------HEN 154 (412)
T ss_dssp TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEECSCCEEEEEECTTSCEEEEET--TSC------EEE
T ss_pred CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEEEEEEEeeeEcCCCeEEEEEC--CCC------EEE
Confidence 112222222 2346788999999987554 5666665 776 889
Q ss_pred ccEEEEeeccccC
Q psy9583 664 FDKLLIAIGRIPN 676 (866)
Q Consensus 664 ~D~vi~a~G~~p~ 676 (866)
+|+||-|-|....
T Consensus 155 adlvVgADG~~S~ 167 (412)
T 4hb9_A 155 VDVLVGADGSNSK 167 (412)
T ss_dssp ESEEEECCCTTCH
T ss_pred eeEEEECCCCCcc
Confidence 9999999997653
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0061 Score=69.56 Aligned_cols=59 Identities=8% Similarity=0.106 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEee-CCCCccceeEEEeccEEEEeecccc
Q psy9583 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSN-KSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+...+.+.+.+.|++++.+++|+++..+++.+.+.+.+ .+|. ..++.+|.||.|+|...
T Consensus 151 l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~----~~~i~A~~VV~AtG~~s 210 (501)
T 2qcu_A 151 LVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGK----KYSWQARGLVNATGPWV 210 (501)
T ss_dssp HHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCC----EEEEEESCEEECCGGGH
T ss_pred HHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCC----EEEEECCEEEECCChhH
Confidence 34456667778899999999999998876655566543 2342 34789999999999654
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0045 Score=73.68 Aligned_cols=53 Identities=9% Similarity=0.219 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 616 KAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 616 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
.+.+.+++.|++++++++|+++..+++++.+... +|. .++.+|.||+|+|...
T Consensus 417 aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~--~G~-----~~i~Ad~VVlAtG~~s 469 (689)
T 3pvc_A 417 ALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFG--QSQ-----AAKHHATVILATGHRL 469 (689)
T ss_dssp HHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC---CC-----CCEEESEEEECCGGGT
T ss_pred HHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeC--CCc-----EEEECCEEEECCCcch
Confidence 3445566789999999999999988777665543 331 1578999999999764
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0048 Score=71.13 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=40.0
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
..+.+.+++.|++++.+ +|+++..++++..+.+...+|. ++.+|.||.|+|.....
T Consensus 169 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~------~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGR------TLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSC------EECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCc------EEEeCEEEECCCCchhh
Confidence 34455666789999999 8999987654422223333564 79999999999987654
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00052 Score=75.57 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=31.0
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~ 423 (866)
+||+|||||++|+++|..|++. |.+|+|+|+.+
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~ 35 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKND 35 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 4799999999999999999999 99999999974
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0037 Score=73.20 Aligned_cols=32 Identities=25% Similarity=0.115 Sum_probs=30.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.
T Consensus 287 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~ 318 (598)
T 2x8g_A 287 GKTLVIGASYVALECAGFLASLGGDVTVMVRS 318 (598)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 57999999999999999999999999999974
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0045 Score=76.39 Aligned_cols=110 Identities=13% Similarity=0.112 Sum_probs=74.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---c-----c----cHHHHHHHHHHHHHc-CCEEEeCceEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---T-----V----DEEIAKKAFHLLNKQ-GLNIILNTKIHD 636 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---~-----~----d~~~~~~l~~~l~~~-GV~i~~~~~v~~ 636 (866)
..+|+|||+|+.|+.+|..+++.|.+|+++++.+.+.. . + ..+....+.+.+.+. +++++.++.+..
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~~~~V~~ 207 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQRTTVFG 207 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEESSEEEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEeCCEEEe
Confidence 35799999999999999999999999999998765421 0 1 234455566667774 999999999988
Q ss_pred EEEcCCeEEEEEeeCCCCc-------cceeEEEeccEEEEeeccccCCCC
Q psy9583 637 IKINKENVLINYSNKSTNV-------KTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~-------~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+...+....+......-.. ..+...+.+|.+|+|||..|....
T Consensus 208 i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ 257 (965)
T 2gag_A 208 SYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIV 257 (965)
T ss_dssp EETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCC
T ss_pred eecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCC
Confidence 8643321111111000000 011247899999999999886543
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0076 Score=67.39 Aligned_cols=55 Identities=9% Similarity=0.138 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCEEEeCc---eEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 613 IAKKAFHLLNKQGLNIILNT---KIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~---~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+...+.+.+++.|++|++++ +|+++..+++.+. +.+. +|. ++.+|.||+|+|...
T Consensus 163 ~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~--~G~------~i~Ad~VV~AtG~~s 221 (438)
T 3dje_A 163 ALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTA--DGK------IWRAERTFLCAGASA 221 (438)
T ss_dssp HHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEET--TTE------EEECSEEEECCGGGG
T ss_pred HHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEEC--CCC------EEECCEEEECCCCCh
Confidence 34455566777899999999 9999988777765 5543 564 799999999999754
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0091 Score=63.77 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=100.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCCC--------------------------------------ccc
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFLN--------------------------------------TVD 610 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l~--------------------------------------~~d 610 (866)
..|+|||+|+.|+-+|..|++. |.+|+++++.+.+.. ...
T Consensus 80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~ 159 (344)
T 3jsk_A 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHA 159 (344)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecH
Confidence 4799999999999999999997 999999998764320 002
Q ss_pred HHHHHHHHHHHHH-cCCEEEeCceEEEEEEcCC-------------------eEE-EEEe----eCCCC--ccceeEEEe
Q psy9583 611 EEIAKKAFHLLNK-QGLNIILNTKIHDIKINKE-------------------NVL-INYS----NKSTN--VKTEIITSI 663 (866)
Q Consensus 611 ~~~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~-------------------~~~-v~~~----~~~g~--~~~~~~~~~ 663 (866)
.++.+.+.+.+.+ .|++++.++.++++..+++ .+. +.+. ..++. ...+..++.
T Consensus 160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~ 239 (344)
T 3jsk_A 160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN 239 (344)
T ss_dssp HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence 3445666667777 5999999999998876542 221 1111 11221 111345899
Q ss_pred ccEEEEeeccccCCCCCC---ccccCee--ecCCCcEEeC-------CCCCCCCCCEEEecccCC--------CCCcHHH
Q psy9583 664 FDKLLIAIGRIPNTNNLN---IDKIGLK--VNENNFIIVN-------DNCETNIPNIYAIGDVVR--------GPMLAHK 723 (866)
Q Consensus 664 ~D~vi~a~G~~p~~~~l~---l~~~gl~--~~~~G~i~Vd-------~~l~Ts~~~VyA~GD~a~--------~~~~~~~ 723 (866)
++.||.|+|......-.. +...++. +...+..+.+ ++-+--+||+|++|=.+. +|-+. .
T Consensus 240 Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~~~~g~~rmgp~fg-~ 318 (344)
T 3jsk_A 240 APVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELSEIDGANRMGPTFG-A 318 (344)
T ss_dssp CSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHHHHHTCEECCSCCH-H
T ss_pred cCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhHhhcCCCCCCcccc-e
Confidence 999999999876532110 1122221 1101112111 011113699999998763 33222 3
Q ss_pred HHHHHHHHHHHHhC
Q psy9583 724 AEEEGIMVAEHISG 737 (866)
Q Consensus 724 A~~~g~~aa~~i~g 737 (866)
=+..|+.||+.|+.
T Consensus 319 m~~sg~~~a~~~~~ 332 (344)
T 3jsk_A 319 MALSGVKAAHEAIR 332 (344)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHH
Confidence 34678888887763
|
| >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00043 Score=75.82 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=57.1
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecc---------------------------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDK--------------------------------------------------- 44 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k--------------------------------------------------- 44 (866)
..|+|.++++++||.|++||+|+++++..
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999998632
Q ss_pred ------eeeEEecCCCeEEEEEeecCCCEEecC--CEEEEEecC
Q psy9583 45 ------VILELPAPQDGIINKIIITDGSIVTSN--QVIALIDTD 80 (866)
Q Consensus 45 ------~~~~i~~~~~G~~~~~~~~~g~~v~~g--~~l~~~~~~ 80 (866)
....|.||++|+|.++.+++|+.|..| ++|+.|...
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSEEEECC
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCCeEcCCCCceeEEEecC
Confidence 125799999999999999999999995 899998753
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00065 Score=80.48 Aligned_cols=40 Identities=28% Similarity=0.500 Sum_probs=36.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
.+||+|||||++|++||..|++.|++|+|+|+. +.+||.+
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~------~~~gg~~ 146 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR------DRVGGRV 146 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS------SSSBTTC
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecC------CCCCCcc
Confidence 489999999999999999999999999999998 6777765
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0074 Score=69.03 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeEE-EEEeeCCCCccceeEEEecc-EEEEeecccc
Q psy9583 612 EIAKKAFHLLNKQGLNIILNTKIHDIKIN-KENVL-INYSNKSTNVKTEIITSIFD-KLLIAIGRIP 675 (866)
Q Consensus 612 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~-v~~~~~~g~~~~~~~~~~~D-~vi~a~G~~p 675 (866)
.+...+.+.+++.|+++++++.++++..+ ++.+. +.+.. ++. ..++.+| .||+|+|--.
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~-~g~----~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ-YGK----EVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEE-TTE----EEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEE-CCc----EEEEEeCCeEEEeCCChh
Confidence 44556667777889999999999999887 44443 44443 332 3578996 9999999654
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0056 Score=70.72 Aligned_cols=98 Identities=9% Similarity=0.162 Sum_probs=72.0
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-------------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN------------------------------------------- 607 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~------------------------------------------- 607 (866)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+....
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 106 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV 106 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence 4799999999999999999999999999987643210
Q ss_pred -c-----c---------------------c-HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEee-CCCCccce
Q psy9583 608 -T-----V---------------------D-EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSN-KSTNVKTE 658 (866)
Q Consensus 608 -~-----~---------------------d-~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~-~~g~~~~~ 658 (866)
. + + ..+.+.+.+.+++. +++++++++++.+++++.+++.+ .+|.
T Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~---- 179 (549)
T 2r0c_A 107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGA---- 179 (549)
T ss_dssp TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCC----
T ss_pred CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCC----
Confidence 0 0 0 12334444445444 88899999999888888887764 2242
Q ss_pred eEEEeccEEEEeecccc
Q psy9583 659 IITSIFDKLLIAIGRIP 675 (866)
Q Consensus 659 ~~~~~~D~vi~a~G~~p 675 (866)
..++.+|.||.|.|...
T Consensus 180 ~~~i~a~~vVgADG~~S 196 (549)
T 2r0c_A 180 TRAVHARYLVACDGASS 196 (549)
T ss_dssp EEEEEEEEEEECCCTTC
T ss_pred EEEEEeCEEEECCCCCc
Confidence 34799999999999754
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0009 Score=75.41 Aligned_cols=91 Identities=16% Similarity=0.221 Sum_probs=68.0
Q ss_pred CCeEEEECCcHHHHHHHHHHHh-c------CCcEEEEecCCcCCC----------cccHHHHHHHHHHHHHcCCEEEeCc
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRR-L------GSEVTILEMSSNFLN----------TVDEEIAKKAFHLLNKQGLNIILNT 632 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~-~------g~~Vtli~~~~~~l~----------~~d~~~~~~l~~~l~~~GV~i~~~~ 632 (866)
+++|+|||+|+.|+.+|..|.+ . |.+|+++++.+.+.. ....++...+.+.+++.|++++.+.
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v 82 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 82 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence 4689999999999999999999 7 999999999876532 1234567777788888899999885
Q ss_pred eEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc-cCC
Q psy9583 633 KIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI-PNT 677 (866)
Q Consensus 633 ~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~-p~~ 677 (866)
.+ +.. +.+. ++ .+.+|.||+|+|.. |..
T Consensus 83 ~v------~~~--v~~~--~~-------~~~~d~lViAtG~~~~~~ 111 (456)
T 1lqt_A 83 VV------GEH--VQPG--EL-------SERYDAVIYAVGAQSDRM 111 (456)
T ss_dssp CB------TTT--BCHH--HH-------HHHSSEEEECCCCCEECC
T ss_pred EE------CCE--EEEC--CC-------eEeCCEEEEeeCCCCCCC
Confidence 53 111 2221 22 46899999999996 443
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00087 Score=80.86 Aligned_cols=41 Identities=29% Similarity=0.514 Sum_probs=36.6
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
..+||+|||||++||+||..|++.|++|+|+|+. +.+||.+
T Consensus 277 ~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~------~~~GG~~ 317 (852)
T 2xag_A 277 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR------DRVGGRV 317 (852)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS------SSSCTTC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEec------CcCCCce
Confidence 3589999999999999999999999999999997 5677754
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0036 Score=69.35 Aligned_cols=32 Identities=28% Similarity=0.498 Sum_probs=29.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhc--CCcEEEEecC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMS 602 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~ 602 (866)
.+|+|||||.+|+-+|..|++. |.+|+++++.
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~ 70 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG 70 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 4799999999999999999999 9999999875
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0008 Score=83.67 Aligned_cols=93 Identities=23% Similarity=0.420 Sum_probs=70.7
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
.++|+|||||+.|+.+|..|++.|. +|+++++.+.+.. .++.+..++..+.+++.||++++++.+..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~--- 263 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE--- 263 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST---
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEcccEecc---
Confidence 5789999999999999999999999 7999999876531 23556677777889999999999887731
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeecc-ccCC
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR-IPNT 677 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~-~p~~ 677 (866)
.. +++. ++. .+.+|.|++|||. +|..
T Consensus 264 --~~--v~~~--~~~------~~~~d~vvlAtGa~~p~~ 290 (1025)
T 1gte_A 264 --NE--ITLN--TLK------EEGYKAAFIGIGLPEPKT 290 (1025)
T ss_dssp --TS--BCHH--HHH------HTTCCEEEECCCCCEECC
T ss_pred --ce--EEhh--hcC------ccCCCEEEEecCCCCCCC
Confidence 11 1221 221 4679999999998 5764
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0078 Score=70.90 Aligned_cols=101 Identities=13% Similarity=0.189 Sum_probs=76.0
Q ss_pred CeEEEECCcHHHHHHHHHHHh-cCCcEEEEecCCcCCC------------------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRR-LGSEVTILEMSSNFLN------------------------------------------ 607 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~-~g~~Vtli~~~~~~l~------------------------------------------ 607 (866)
-+|+|||||+.|+-+|..|++ .|.+|+++++.+....
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 112 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG 112 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence 469999999999999999999 9999999987543210
Q ss_pred ----------------c--------cc-HHHHHHHHHHHHHcCC--EEEeCceEEEEEEcCC----eEEEEEee----CC
Q psy9583 608 ----------------T--------VD-EEIAKKAFHLLNKQGL--NIILNTKIHDIKINKE----NVLINYSN----KS 652 (866)
Q Consensus 608 ----------------~--------~d-~~~~~~l~~~l~~~GV--~i~~~~~v~~i~~~~~----~~~v~~~~----~~ 652 (866)
. ++ ..+...+.+.+++.|+ ++++++++++++.+++ .+.+++.+ .+
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~ 192 (639)
T 2dkh_A 113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHA 192 (639)
T ss_dssp STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGT
T ss_pred CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCC
Confidence 0 00 2455666777888877 9999999999988753 57777764 23
Q ss_pred CCccceeEEEeccEEEEeecccc
Q psy9583 653 TNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 653 g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
|. ..++.+|.||.|.|...
T Consensus 193 G~----~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 193 GQ----IETVQARYVVGCDGARS 211 (639)
T ss_dssp TC----EEEEEEEEEEECCCTTC
T ss_pred CC----eEEEEeCEEEECCCcch
Confidence 42 34789999999998653
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.005 Score=73.24 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=67.1
Q ss_pred ccceeeec--CCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIG--AGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIG--gG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
..+|+||| +|..|+.+|..|++.|.+|+++++. +.+.... . .
T Consensus 523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~------~~l~~~~-----~------------------------~- 566 (690)
T 3k30_A 523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPG------AQVSSWT-----N------------------------N- 566 (690)
T ss_dssp SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESS------SSTTGGG-----G------------------------G-
T ss_pred CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecc------ccccccc-----c------------------------c-
Confidence 35699999 9999999999999999999999986 2221100 0 0
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEE---cCCceEEEecEEEEecCCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQII---NKTKETITAKYIIIATGSK 543 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~---~~~g~~i~~d~lViATGs~ 543 (866)
.. ....+...+++.||+++.++.+. +.. ..+.+. +.++.++.+|.||+|+|..
T Consensus 567 ----~~--------------~~~~l~~~l~~~GV~i~~~~~V~~i~~-----~~~~v~~~~~~~~~~i~aD~VV~A~G~~ 623 (690)
T 3k30_A 567 ----TF--------------EVNRIQRRLIENGVARVTDHAVVAVGA-----GGVTVRDTYASIERELECDAVVMVTARL 623 (690)
T ss_dssp ----GT--------------CHHHHHHHHHHTTCEEEESEEEEEEET-----TEEEEEETTTCCEEEEECSEEEEESCEE
T ss_pred ----ch--------------hHHHHHHHHHHCCCEEEcCcEEEEEEC-----CeEEEEEccCCeEEEEECCEEEECCCCC
Confidence 00 01123445778899999998776 433 334443 2345789999999999988
Q ss_pred Cc
Q psy9583 544 AR 545 (866)
Q Consensus 544 p~ 545 (866)
|.
T Consensus 624 p~ 625 (690)
T 3k30_A 624 PR 625 (690)
T ss_dssp EC
T ss_pred CC
Confidence 75
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0091 Score=68.07 Aligned_cols=35 Identities=31% Similarity=0.391 Sum_probs=30.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
|+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~ 36 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP 36 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence 68999999999999999999999999999886543
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0082 Score=67.88 Aligned_cols=98 Identities=26% Similarity=0.407 Sum_probs=69.7
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-------------c------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-------------T------------------------------ 608 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-------------~------------------------------ 608 (866)
.|+|||+|..|+-+|..+++.|.+|+++++...-.. .
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 489999999999999999999999999988610000 0
Q ss_pred ------------------------------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeC
Q psy9583 609 ------------------------------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNK 651 (866)
Q Consensus 609 ------------------------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~ 651 (866)
....+...+.+.+++.|++++.++.+ ++..+++.+. +.+...
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~ 159 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKR 159 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTT
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeC
Confidence 01133455556667789999999999 9876665543 333321
Q ss_pred CCCccceeEEEeccEEEEeeccccCC
Q psy9583 652 STNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 652 ~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
+| ++.+|.||+|+|..+..
T Consensus 160 ~g-------~~~a~~VVlAtGg~~~~ 178 (472)
T 2e5v_A 160 GL-------VEDVDKLVLATGGYSYL 178 (472)
T ss_dssp EE-------ECCCSEEEECCCCCGGG
T ss_pred CC-------eEEeeeEEECCCCCccc
Confidence 22 46799999999987644
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.019 Score=63.84 Aligned_cols=53 Identities=13% Similarity=0.128 Sum_probs=40.4
Q ss_pred HHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 618 FHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 618 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
.+.+++.|++|++++.|++|..+++++. +.+ +|. ++.+|.||+|+|......+
T Consensus 203 ~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~---~g~------~~~ad~VV~a~~~~~~~~l 256 (425)
T 3ka7_A 203 ETVISANGGKIHTGQEVSKILIENGKAAGIIA---DDR------IHDADLVISNLGHAATAVL 256 (425)
T ss_dssp HHHHHHTTCEEECSCCEEEEEEETTEEEEEEE---TTE------EEECSEEEECSCHHHHHHH
T ss_pred HHHHHHcCCEEEECCceeEEEEECCEEEEEEE---CCE------EEECCEEEECCCHHHHHHh
Confidence 4556678999999999999998877765 433 354 7999999999987544333
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.017 Score=61.24 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=99.1
Q ss_pred CeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCCCc--------------------------------------cc
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFLNT--------------------------------------VD 610 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l~~--------------------------------------~d 610 (866)
-+|+|||+|+.|+.+|..|++. |.+|+++++.+..... ..
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~ 145 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA 145 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence 4799999999999999999998 9999999986544200 12
Q ss_pred HHHHHHHHHHHHHc-CCEEEeCceEEEEEEcC----C--eEE-EEEe----eCCC--CccceeEEEec------------
Q psy9583 611 EEIAKKAFHLLNKQ-GLNIILNTKIHDIKINK----E--NVL-INYS----NKST--NVKTEIITSIF------------ 664 (866)
Q Consensus 611 ~~~~~~l~~~l~~~-GV~i~~~~~v~~i~~~~----~--~~~-v~~~----~~~g--~~~~~~~~~~~------------ 664 (866)
.++...+.+.+.+. |++++.++.++++..++ + .+. +.+. ..++ ....+...+.+
T Consensus 146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~ 225 (326)
T 2gjc_A 146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS 225 (326)
T ss_dssp HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence 34455666666664 99999999999998763 2 222 2221 1112 01112357889
Q ss_pred ---cEEEEeeccccCCCCCCccccCeeecCCCc------E--------EeCCCCC-CCCCCEEEecccC----CCCC---
Q psy9583 665 ---DKLLIAIGRIPNTNNLNIDKIGLKVNENNF------I--------IVNDNCE-TNIPNIYAIGDVV----RGPM--- 719 (866)
Q Consensus 665 ---D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~------i--------~Vd~~l~-Ts~~~VyA~GD~a----~~~~--- 719 (866)
+.||.|+|.......+..+.. ..++..+. . +|+..-+ +-+|++|++|-.+ +.++
T Consensus 226 ~~~~~VV~ATG~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~r~g~ 304 (326)
T 2gjc_A 226 QKHGVILSTTGHDGPFGAFCAKRI-VDIDQNQKLGGMKGLDMNHAEHDVVIHSGAYAGVDNMYFAGMEVAELDGLNRMGP 304 (326)
T ss_dssp TTCCEEEECCCCC--CCSHHHHHH-HHHHSSCCCCCCCCBCHHHHHHHHHHHCEECTTSTTEEECTHHHHHHHTCCBCCS
T ss_pred ccCCEEEECcCCCchHHHHHHhhc-cccccccccCceeccccccchhheeecCCCccccCCEEECChHHHHhcCCCCCCh
Confidence 999999998764433211111 01111110 1 1111112 2679999999887 3331
Q ss_pred cHHHHHHHHHHHHHHHh
Q psy9583 720 LAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 720 ~~~~A~~~g~~aa~~i~ 736 (866)
..-.-..+|+.||+.|+
T Consensus 305 ~fg~m~~sg~~~a~~~~ 321 (326)
T 2gjc_A 305 TFGAMALSGVHAAEQIL 321 (326)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHHHHHHHH
Confidence 22233467888888775
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.014 Score=64.81 Aligned_cols=51 Identities=14% Similarity=0.274 Sum_probs=39.1
Q ss_pred HHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCC
Q psy9583 618 FHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678 (866)
Q Consensus 618 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~ 678 (866)
.+.+++.|++|++++.|++|..+++++ + . .+|. ++.+|.||+|+|......
T Consensus 196 ~~~~~~~G~~i~~~~~V~~i~~~~~~v-V--~-~~g~------~~~ad~Vv~a~~~~~~~~ 246 (421)
T 3nrn_A 196 ERIIMENKGKILTRKEVVEINIEEKKV-Y--T-RDNE------EYSFDVAISNVGVRETVK 246 (421)
T ss_dssp HHHHHTTTCEEESSCCEEEEETTTTEE-E--E-TTCC------EEECSEEEECSCHHHHHH
T ss_pred HHHHHHCCCEEEcCCeEEEEEEECCEE-E--E-eCCc------EEEeCEEEECCCHHHHHH
Confidence 344566799999999999999877776 3 2 3555 799999999999754433
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0021 Score=70.68 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=67.1
Q ss_pred CeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCC-----------------------Cc-----------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFL-----------------------NT----------------- 608 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l-----------------------~~----------------- 608 (866)
.+|+|||||+.|+.+|..|++. |.+|+++++.+.+. ..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 3699999999999999999999 99999999875440 00
Q ss_pred ---------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 609 ---------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 609 ---------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
...++.+.+.+.+++.|++++++++|++++.. . ++.+|.||.|.|.
T Consensus 81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-------------~------~~~ad~vV~AdG~ 141 (381)
T 3c4a_A 81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL-------------P------LADYDLVVLANGV 141 (381)
T ss_dssp SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC-------------C------GGGCSEEEECCGG
T ss_pred CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc-------------c------cccCCEEEECCCC
Confidence 01456677777788889999999988766421 0 2568999999998
Q ss_pred ccC
Q psy9583 674 IPN 676 (866)
Q Consensus 674 ~p~ 676 (866)
...
T Consensus 142 ~S~ 144 (381)
T 3c4a_A 142 NHK 144 (381)
T ss_dssp GGG
T ss_pred Cch
Confidence 765
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.016 Score=70.46 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
+...+.+.+++.|++++.++.|+++..+++++. +.. .+| ++.+|.||+|+|...
T Consensus 153 l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t--~~G-------~i~Ad~VV~AaG~~s 207 (830)
T 1pj5_A 153 AVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQT--ADG-------VIPADIVVSCAGFWG 207 (830)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE--TTE-------EEECSEEEECCGGGH
T ss_pred HHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEE--CCc-------EEECCEEEECCccch
Confidence 334556667788999999999999988766653 332 233 689999999999753
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.024 Score=65.40 Aligned_cols=55 Identities=5% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHHHHHHHc-CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 616 KAFHLLNKQ-GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 616 ~l~~~l~~~-GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
.+.+.+++. |++++.+ +|+++..++++..+.+...+|. ++.+|.||.|+|.....
T Consensus 199 ~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~------~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 199 FLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGR------VFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSC------EEECSEEEECCGGGCCC
T ss_pred HHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCC------EEECCEEEECCCCchhh
Confidence 344555666 9999999 9999987654422223333565 79999999999987654
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=75.37 Aligned_cols=34 Identities=18% Similarity=0.499 Sum_probs=31.9
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
...||+||||||+||+.+|.+|++ |.+|+|+|++
T Consensus 24 ~~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG 57 (536)
T 1ju2_A 24 EGSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERG 57 (536)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSS
T ss_pred cCcccEEEECccHHHHHHHHHHhc-CCcEEEEecC
Confidence 346999999999999999999999 9999999997
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.029 Score=64.86 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeC-CCCccceeEEEeccEEEEeecccc
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNK-STNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~-~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
..+.+.+++.|++++++++|+++..+++++. +.+.+. +|. ...+.+|.||.|+|...
T Consensus 174 ~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~----~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 174 LEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDT----THTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCC----EEEEEEEEEEECCGGGH
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCc----eEEEECCEEEECCCcch
Confidence 3444566778999999999999998877643 555431 232 35799999999999643
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.019 Score=65.94 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=38.9
Q ss_pred HHHHHHHH-cCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 616 KAFHLLNK-QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 616 ~l~~~l~~-~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
.+.+.+++ .|++++.+ +|+++..++++..+.+...+|. ++.+|.||.|+|.....
T Consensus 180 ~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~------~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 180 LLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNG------EISGQLFIDCTGAKSLL 235 (526)
T ss_dssp HHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSC------EEECSEEEECSGGGCCC
T ss_pred HHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCC------EEEcCEEEECCCcchHH
Confidence 34455566 79999999 6999987655433333333554 69999999999997654
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.012 Score=70.37 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=30.7
Q ss_pred ccceeeec--CCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIG--AGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIG--gG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+||| ||..|+.+|..|++.|.+|+++++.
T Consensus 528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~ 562 (729)
T 1o94_A 528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV 562 (729)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEecc
Confidence 36899999 9999999999999999999999986
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0019 Score=74.27 Aligned_cols=35 Identities=23% Similarity=0.509 Sum_probs=32.1
Q ss_pred ccceeeecCCccHHHHHHHHHH-CCCeEEEEeccCC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWKD 424 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~-~g~~V~liek~~~ 424 (866)
+||+||||||+||+.+|.+|++ .|++|+|+|+++.
T Consensus 17 ~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE 52 (526)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred CeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence 6999999999999999999998 5799999999843
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0025 Score=73.71 Aligned_cols=34 Identities=38% Similarity=0.700 Sum_probs=32.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.||++|||+|++|+.+|.+|++.|++|+|+|++.
T Consensus 7 ~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~ 40 (546)
T 1kdg_A 7 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 40 (546)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred ceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 5999999999999999999999999999999974
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0025 Score=73.73 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCC-CeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG-FKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~ 423 (866)
.||+||||||.||+.+|.+|++.+ .+|+|||++.
T Consensus 6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~ 40 (577)
T 3q9t_A 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGI 40 (577)
T ss_dssp EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSC
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 599999999999999999999997 7999999984
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.036 Score=65.44 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=30.0
Q ss_pred CeEEEECCcHHHHHHHHHHHh-----cCCcEEEEecCC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRR-----LGSEVTILEMSS 603 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~-----~g~~Vtli~~~~ 603 (866)
-.|+|||||+.|+-+|..|++ .|.+|+++++.+
T Consensus 9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~ 46 (665)
T 1pn0_A 9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS 46 (665)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCC
Confidence 369999999999999999999 999999998754
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.045 Score=62.48 Aligned_cols=54 Identities=7% Similarity=0.042 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCe--EEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKEN--VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
..+.+.+++.|++++.+ +|+++..++++ +.+.+ .+|. ++.+|.||.|+|.....
T Consensus 177 ~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~--~~g~------~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 177 RYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHT--KQHG------EISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEE--SSSC------EEECSEEEECCGGGCCC
T ss_pred HHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEE--CCCC------EEEcCEEEECCCcchHH
Confidence 33445566679999999 99999875544 33444 3564 79999999999987654
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.034 Score=64.71 Aligned_cols=98 Identities=14% Similarity=0.192 Sum_probs=69.4
Q ss_pred eEEEECCcHHHHHHHHHHHhcC--CcEEEEecCCcCCC-----------cc-----------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFLN-----------TV----------------------------- 609 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g--~~Vtli~~~~~~l~-----------~~----------------------------- 609 (866)
.|+|||+|..|+-+|..|++.| .+|+++++.+.... .+
T Consensus 7 DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~~ 86 (602)
T 1kf6_A 7 DLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYF 86 (602)
T ss_dssp SEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 6999999999999999999999 99999987532100 00
Q ss_pred ----------------------------------------------cHHHHHHHHHHHHHcC-CEEEeCceEEEEEEcCC
Q psy9583 610 ----------------------------------------------DEEIAKKAFHLLNKQG-LNIILNTKIHDIKINKE 642 (866)
Q Consensus 610 ----------------------------------------------d~~~~~~l~~~l~~~G-V~i~~~~~v~~i~~~~~ 642 (866)
...+...+.+.+.+.| |+++.++.++++..+++
T Consensus 87 ~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g 166 (602)
T 1kf6_A 87 VHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILVDDG 166 (602)
T ss_dssp HHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEeCC
Confidence 0123344445556677 99999999999987766
Q ss_pred eEE-EEEee-CCCCccceeEEEeccEEEEeecc
Q psy9583 643 NVL-INYSN-KSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 643 ~~~-v~~~~-~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
.+. +.+.+ .+|. ...+.++.||+|+|.
T Consensus 167 ~v~Gv~~~~~~~G~----~~~i~A~~VVlAtGg 195 (602)
T 1kf6_A 167 HVRGLVAMNMMEGT----LVQIRANAVVMATGG 195 (602)
T ss_dssp EEEEEEEEETTTTE----EEEEECSCEEECCCC
T ss_pred EEEEEEEEEcCCCc----EEEEEcCeEEECCCC
Confidence 443 22322 3443 347899999999985
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.067 Score=61.87 Aligned_cols=34 Identities=26% Similarity=0.414 Sum_probs=30.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
.-.|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~ 65 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD 65 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4589999999999999999999999999998653
|
| >4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.00052 Score=75.22 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=54.3
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecc---------------------------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDK--------------------------------------------------- 44 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k--------------------------------------------------- 44 (866)
..|+|.+++|++||.|++||+|+++++..
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 46999999999999999999999998642
Q ss_pred ----------------------------------eeeEEecCCCeEEEEEeecCCCEEecCCE---EEEEe
Q psy9583 45 ----------------------------------VILELPAPQDGIINKIIITDGSIVTSNQV---IALID 78 (866)
Q Consensus 45 ----------------------------------~~~~i~~~~~G~~~~~~~~~g~~v~~g~~---l~~~~ 78 (866)
....|.||++|+|.++.+++|+.|..|++ |+.+.
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQTVNSNQTTPTIIKVA 189 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCBCCTTTSCCCCBBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCCccCCCCcceEEEEc
Confidence 01359999999999999999999999998 65554
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0028 Score=74.42 Aligned_cols=33 Identities=24% Similarity=0.518 Sum_probs=31.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCC--------CeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG--------FKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g--------~~V~liek~ 422 (866)
.++|+|||||++||+||..|++.| ++|+|+|+.
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~ 96 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEAD 96 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEecc
Confidence 478999999999999999999998 999999997
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.004 Score=72.00 Aligned_cols=35 Identities=23% Similarity=0.404 Sum_probs=32.1
Q ss_pred cccceeeecCCccHHHHHHHHHHC-CCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~-g~~V~liek~~ 423 (866)
..||+||||||.||+.+|.+|++. +.+|+|+|++.
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 359999999999999999999985 79999999985
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0071 Score=70.08 Aligned_cols=60 Identities=10% Similarity=0.091 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINK--ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~--~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
...+.+.+.+.++..|..+++++.|.+|..++ +.+.... ..+|+ .+.+|.||.....-|.
T Consensus 377 ~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~-~~~Ge------~i~A~~VVs~~~~lp~ 438 (650)
T 1vg0_A 377 QGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVI-DQFGQ------RIISKHFIIEDSYLSE 438 (650)
T ss_dssp TTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEE-ETTSC------EEECSEEEEEGGGBCT
T ss_pred hhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEE-eCCCC------EEEcCEEEEChhhcCH
Confidence 35778888899999999999999999998766 4454433 34676 8899999997776654
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.005 Score=71.04 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHH-CCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~-~g~~V~liek~~ 423 (866)
.||+||||||.||+.+|.+|++ .+.+|+|+|++.
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~ 36 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGV 36 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSB
T ss_pred CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCC
Confidence 4999999999999999999999 689999999984
|
| >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0049 Score=53.32 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=41.8
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 34 NENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 34 g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
|..+|.+|.++-...|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~le~~ 51 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVM 51 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTEEECTTCEEEEEEET
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcCEECCCCEEEEEEec
Confidence 45567778888888999999999999999999999999999999853
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0062 Score=69.60 Aligned_cols=35 Identities=37% Similarity=0.609 Sum_probs=32.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.+||++|||+|++|+.+|.+|++.|.+|+|+|++.
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~ 44 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR 44 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCC
Confidence 35999999999999999999999999999999973
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.072 Score=60.56 Aligned_cols=105 Identities=18% Similarity=0.162 Sum_probs=73.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcC--------------CcEEEEecCCcCC-------Cc----------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLG--------------SEVTILEMSSNFL-------NT---------------------- 608 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g--------------~~Vtli~~~~~~l-------~~---------------------- 608 (866)
.|+|||+|+.|+-+|..|.+.| ....++++.+.+. +.
T Consensus 41 Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~~s 120 (501)
T 4b63_A 41 DLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSSFT 120 (501)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCTTS
T ss_pred cEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCccc
Confidence 5899999999999999988753 2456677665321 10
Q ss_pred ----------------------ccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC--------eEEEEEeeCCCCccce
Q psy9583 609 ----------------------VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKE--------NVLINYSNKSTNVKTE 658 (866)
Q Consensus 609 ----------------------~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--------~~~v~~~~~~g~~~~~ 658 (866)
.-.++.++++...++.+..+.++++|++++..+. .+.|+..+... ++
T Consensus 121 f~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~---g~ 197 (501)
T 4b63_A 121 FLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVET---GE 197 (501)
T ss_dssp HHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTT---CC
T ss_pred hHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCC---ce
Confidence 0135566666666666777999999999986432 36666654221 22
Q ss_pred eEEEeccEEEEeeccccCCCC
Q psy9583 659 IITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 659 ~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..++.++.|++|+|..|+.+.
T Consensus 198 ~~~~~ar~vVlatG~~P~iP~ 218 (501)
T 4b63_A 198 ISARRTRKVVIAIGGTAKMPS 218 (501)
T ss_dssp EEEEEEEEEEECCCCEECCCT
T ss_pred EEEEEeCEEEECcCCCCCCCC
Confidence 457899999999999888764
|
| >3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.027 Score=60.11 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=50.7
Q ss_pred EEEEEEeCCCCeeeCCCeEEEEEe----cceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 19 TLLNWHKKEGELVVRNENLIDIET----DKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 19 ~i~~w~~~~G~~v~~g~~l~~ve~----~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
=+++.+++.||.|++||+|++|.. .....+|.||.+|+|... ...-.|..|+.|+.|...
T Consensus 266 Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~--~~~~~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 266 GLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISR--HFPGMIKSGDCAAVIGVV 329 (331)
T ss_dssp EEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEE--ECSSEECTTCEEEEEECB
T ss_pred eEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEE--eCCCccCCCCEEEEEecc
Confidence 377788999999999999999986 356789999999999654 456789999999998753
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0077 Score=68.73 Aligned_cols=34 Identities=29% Similarity=0.510 Sum_probs=32.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.||++|||+|++|+.+|.+|++.|.+|+|||++.
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~ 38 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 38 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4999999999999999999999999999999973
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.077 Score=59.30 Aligned_cols=31 Identities=23% Similarity=0.458 Sum_probs=29.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcC-CcEEEEec
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLG-SEVTILEM 601 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g-~~Vtli~~ 601 (866)
.+|+|||||..|+-+|..|++.| .+|+++++
T Consensus 24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 47999999999999999999999 99999998
|
| >3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.032 Score=60.18 Aligned_cols=60 Identities=28% Similarity=0.197 Sum_probs=52.6
Q ss_pred EEEEEeCCCCeeeCCCeEEEEEe----cceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 20 LLNWHKKEGELVVRNENLIDIET----DKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 20 i~~w~~~~G~~v~~g~~l~~ve~----~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
+++..++.||.|++||+|++|+. .+...+|.||.+|+|... .....|..|+.|+.|....
T Consensus 277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~~V~~Gd~l~~ia~~~ 340 (354)
T 3cdx_A 277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPGRVTRGDAVAVVMEDY 340 (354)
T ss_dssp EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSSEECTTCEEEEEEEEC
T ss_pred EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCCccCCCCEEEEEeeec
Confidence 77888999999999999999997 488899999999999754 5788999999999997543
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.055 Score=60.78 Aligned_cols=34 Identities=32% Similarity=0.468 Sum_probs=31.1
Q ss_pred CeEEEECCcHHHHHHHHHHHhcC------CcEEEEecCCc
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLG------SEVTILEMSSN 604 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g------~~Vtli~~~~~ 604 (866)
++|+|||||.+|+-+|..|++.| .+|+++++.++
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~ 45 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPR 45 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCC
Confidence 58999999999999999999999 89999988653
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.17 Score=58.72 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=37.6
Q ss_pred HHHHHHHcCCEEEeCceEEEEEEc-CCeEE-EEEee-CCCCccceeEEEeccEEEEeeccc
Q psy9583 617 AFHLLNKQGLNIILNTKIHDIKIN-KENVL-INYSN-KSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 617 l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~-v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
+.+.+++.||++++++.++++..+ ++.+. +.+.+ .+|. ...+.++.||+|+|.-
T Consensus 149 L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~----~~~i~A~~VVlAtGg~ 205 (588)
T 2wdq_A 149 LYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGE----VVYFKARATVLATGGA 205 (588)
T ss_dssp HHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCC----EEEEEEEEEEECCCCC
T ss_pred HHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCe----EEEEEcCEEEECCCCC
Confidence 445556679999999999999875 44432 33332 3443 3468999999999963
|
| >3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.039 Score=59.69 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=51.1
Q ss_pred EEEEEEeCCCCeeeCCCeEEEEEe------cceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 19 TLLNWHKKEGELVVRNENLIDIET------DKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 19 ~i~~w~~~~G~~v~~g~~l~~ve~------~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
=|.+.+++.||.|++||+|++|-. .....+|.||.+|+|. .....-.|..|+.|+.|..+
T Consensus 299 Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi--~~~~~p~V~~G~~l~~i~~~ 364 (368)
T 3fmc_A 299 GMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPI--LHFASASVHQGTELYKVMTK 364 (368)
T ss_dssp EEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEE--EECSSSEECTTCEEEEEEES
T ss_pred EEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEE--EEeCCCccCCCCEEEEEeee
Confidence 456788999999999999999987 4578899999999995 55666899999999998753
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.091 Score=62.82 Aligned_cols=36 Identities=36% Similarity=0.541 Sum_probs=32.4
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
..+|+|||+|..|+-.|..|++.|.+|+++++.+++
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 371 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRI 371 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccce
Confidence 468999999999999999999999999999986543
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=95.10 E-value=0.15 Score=59.38 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=27.8
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
.|+|||+|..|+-.|..+++.|.+|.++++.+
T Consensus 20 DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~ 51 (621)
T 2h88_A 20 DAVVVGAGGAGLRAAFGLSEAGFNTACVTKLF 51 (621)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 68999999999999999999999999987653
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.06 Score=61.80 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=29.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~ 604 (866)
-.|+|||+|..|+-+|..+++ |.+|+++++.+.
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~ 41 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPV 41 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCT
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCCC
Confidence 369999999999999999999 999999988754
|
| >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.028 Score=45.02 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=30.6
Q ss_pred EEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 48 ELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 48 ~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
+|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 1 ~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 33 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGDQIEKGQEVAILESM 33 (72)
T ss_dssp CEECCSSEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred CEECcccEEEEEEEcCCcCEECCCCEEEEEECC
Confidence 378999999999999999999999999999864
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.011 Score=68.10 Aligned_cols=34 Identities=29% Similarity=0.509 Sum_probs=32.1
Q ss_pred ccceeeecCCccHHHHHHHHHHC-CCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL-GFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~-g~~V~liek~~ 423 (866)
.||++|||+|++|+.+|.+|++. |.+|+|+|++.
T Consensus 13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~ 47 (546)
T 2jbv_A 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGP 47 (546)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCC
Confidence 59999999999999999999998 89999999984
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.013 Score=67.98 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=32.2
Q ss_pred ccceeeecCCccHHHHHHHHHH-CCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~-~g~~V~liek~~ 423 (866)
.||++|||+|++|+.+|.+|++ .|.+|+|+|++.
T Consensus 24 ~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~ 58 (587)
T 1gpe_A 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (587)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 5999999999999999999999 799999999984
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.2 Score=58.70 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=27.8
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
.|+|||+|..|+-.|..+++.|.+|+++++.+
T Consensus 7 DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~ 38 (660)
T 2bs2_A 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (660)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred cEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 58999999999999999999999999987653
|
| >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.043 Score=44.11 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=31.6
Q ss_pred eEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 47 ~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
..|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 39 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGDRVRVGQGLLVLEAM 39 (74)
T ss_dssp CEEECSSCEEEEEECCCTTCEECTTCEEEEEEET
T ss_pred eEEecCCCEEEEEEEcCCCCEeCCCCEEEEEecc
Confidence 4688999999999999999999999999999854
|
| >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A | Back alignment and structure |
|---|
Probab=94.62 E-value=0.038 Score=44.88 Aligned_cols=35 Identities=29% Similarity=0.590 Sum_probs=32.1
Q ss_pred eeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 46 ILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 46 ~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
...|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~~V~~G~~L~~l~~~ 42 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAM 42 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTCEECTTSEEEEEEET
T ss_pred CeEEECCCCEEEEEEEcCCcCEEcCCCEEEEEEcc
Confidence 35789999999999999999999999999999854
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.032 Score=56.99 Aligned_cols=34 Identities=26% Similarity=0.500 Sum_probs=31.9
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 5999999999999999999999999999998765
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.11 Score=58.29 Aligned_cols=33 Identities=33% Similarity=0.345 Sum_probs=30.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+|||.|.+|+++|..|+++|++|++.|+.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~ 41 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKLGAIVTVNDGK 41 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 367999999999999999999999999999985
|
| >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.051 Score=48.20 Aligned_cols=34 Identities=21% Similarity=0.399 Sum_probs=32.1
Q ss_pred eEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 47 ~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
+.|.|+.+|+|.++++++|+.|..|++|+.++..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~~V~~Gq~L~~ld~~ 35 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQD 35 (116)
T ss_dssp EEECCSSCEEEEEECSCTTSEECTTCEEEEEECT
T ss_pred eEEeCcCCEEEEEEECCCcCEECCCCEEEEECHH
Confidence 5799999999999999999999999999999865
|
| >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.043 Score=45.52 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=32.1
Q ss_pred eEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 47 ~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
.+|.||.+|+|.++++++|+.|..|++|+.++...
T Consensus 6 ~~v~a~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 40 (84)
T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSSYAEMEVMK 40 (84)
T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCEEEEEECSS
T ss_pred ceEECCCCEEEEEEECCCCCEECCCCEEEEEEecc
Confidence 47999999999999999999999999999998543
|
| >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A | Back alignment and structure |
|---|
Probab=93.15 E-value=0.093 Score=49.05 Aligned_cols=60 Identities=23% Similarity=0.332 Sum_probs=51.9
Q ss_pred CeEEEEEEEeCCCCeeeC----CCeEEEEEecceeeEEecCCCeEEEEE-------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVR----NENLIDIETDKVILELPAPQDGIINKI------------------------------- 60 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~----g~~l~~ve~~k~~~~i~~~~~G~~~~~------------------------------- 60 (866)
-.|+|+.+. ++.|.|-. |+-++...++ ..+.||.+|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~ 94 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 94 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence 469999975 78888766 8889887776 57899999999988
Q ss_pred ----eecCCCEEecCCEEEEEec
Q psy9583 61 ----IITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 61 ----~~~~g~~v~~g~~l~~~~~ 79 (866)
++++||.|..|++|+.++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (161)
T 1f3z_A 95 GFKRIAEEGQRVKVGDTVIEFDL 117 (161)
T ss_dssp TEEECSCTTCEECTTCEEEEECH
T ss_pred ccEEEEeCcCEECCCCEEEEECH
Confidence 8999999999999999974
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.46 Score=55.65 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=29.3
Q ss_pred CeEEEECCcHHHHHHHHHHH---h-cCCcEEEEecCC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWR---R-LGSEVTILEMSS 603 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~---~-~g~~Vtli~~~~ 603 (866)
-.|+|||+|..|+-+|..++ + .|.+|.++++.+
T Consensus 23 ~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~ 59 (643)
T 1jnr_A 23 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA 59 (643)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence 36999999999999999999 5 899999998765
|
| >2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.25 Score=52.73 Aligned_cols=60 Identities=10% Similarity=0.128 Sum_probs=48.6
Q ss_pred EEEEEEEeCCCCeeeCCCeEEEEEe----cceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEec
Q psy9583 18 ATLLNWHKKEGELVVRNENLIDIET----DKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 18 g~i~~w~~~~G~~v~~g~~l~~ve~----~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~ 79 (866)
+-+....++.|+.|++||+|+++-. .+...+|.||.+|+|.- ....-.|..|+.|+.+..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~--~~~~p~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFA--IRSAMYVQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEE--EECSEEECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEE--EeCCCeeCCCCEEEEEee
Confidence 3455677899999999999999954 46778999999999954 446677889999988864
|
| >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 | Back alignment and structure |
|---|
Probab=92.07 E-value=0.12 Score=47.86 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=51.3
Q ss_pred CeEEEEEEEeCCCCeeeC----CCeEEEEEecceeeEEecCCCeEEEE--------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVR----NENLIDIETDKVILELPAPQDGIINK-------------------------------- 59 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~----g~~l~~ve~~k~~~~i~~~~~G~~~~-------------------------------- 59 (866)
-.|+|+... ++.|.|-. |+-++...++ ..+.||.+|+|..
T Consensus 14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~ 89 (154)
T 2gpr_A 14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN 89 (154)
T ss_dssp SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence 458999874 88888766 8889988776 5899999999987
Q ss_pred ---EeecCCCEEecCCEEEEEec
Q psy9583 60 ---IIITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 60 ---~~~~~g~~v~~g~~l~~~~~ 79 (866)
+++++||.|..|++|+.++.
T Consensus 90 gF~~~V~~Gd~V~~G~~L~~~d~ 112 (154)
T 2gpr_A 90 GFESFVTQDQEVNAGDKLVTVDL 112 (154)
T ss_dssp SEEECCCTTCEECTTCEEEEECH
T ss_pred ceEEEEcCCCEEcCCCEEEEECH
Confidence 48999999999999999974
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.79 E-value=0.13 Score=46.67 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=30.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++|+|||+|..|...|..|.+.|++|+++|+.
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 57999999999999999999999999999985
|
| >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.15 Score=43.68 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=32.2
Q ss_pred eeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 46 ILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 46 ~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
...|.||.+|+|.++++++|+.|..|++|+.++..
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 48 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGDKVKAGDSLMVMIAM 48 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTEEECSSCEEEEEESS
T ss_pred ceEEecCCCEEEEEEECCCCCEECCCCEEEEEEcc
Confidence 45689999999999999999999999999999864
|
| >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A | Back alignment and structure |
|---|
Probab=91.64 E-value=0.14 Score=41.83 Aligned_cols=34 Identities=15% Similarity=0.288 Sum_probs=31.3
Q ss_pred eEEecCCCeEEEEE-------eecCCCEEecCCEEEEEecC
Q psy9583 47 LELPAPQDGIINKI-------IITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 47 ~~i~~~~~G~~~~~-------~~~~g~~v~~g~~l~~~~~~ 80 (866)
..|.||..|++.++ ++++|+.|..|++|+.++..
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~ 45 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAM 45 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEET
T ss_pred eEEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEec
Confidence 46899999999998 89999999999999999864
|
| >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.074 Score=45.15 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=31.7
Q ss_pred eeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 46 ILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 46 ~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
...|.||.+|+|.++.+++|+.|..|++|+.++..
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~ 59 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAM 59 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC-
T ss_pred ceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecc
Confidence 45689999999999999999999999999999854
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.56 Score=54.97 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=28.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhc------CCcEEEEecC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL------GSEVTILEMS 602 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~------g~~Vtli~~~ 602 (866)
-.|+|||+|..|+-+|..+++. |.+|+++++.
T Consensus 23 ~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~ 60 (662)
T 3gyx_A 23 VDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA 60 (662)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence 3699999999999999999987 9999999874
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=0.17 Score=47.33 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=30.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+|+|+|.-|...|..|++.|++|+++|+.
T Consensus 19 ~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 19 SKYIVIFGCGRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 367999999999999999999999999999986
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.14 Score=54.56 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=57.7
Q ss_pred CCeEEEECCcHHHHH-HHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEE
Q psy9583 570 PKKLCIIGAGVIGLE-IGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINY 648 (866)
Q Consensus 570 ~~~vvVIGgG~~glE-~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~ 648 (866)
.+++.|||.|-+|+. +|..|.++|.+|++.++.+.. . ..+.|++.|++++.+.....+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~------~----~~~~L~~~gi~v~~g~~~~~l----------- 62 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYP------P----MSTQLEALGIDVYEGFDAAQL----------- 62 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT------T----HHHHHHHTTCEEEESCCGGGG-----------
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCc------H----HHHHHHhCCCEEECCCCHHHc-----------
Confidence 578999999999997 899999999999999886541 1 235677889988754321000
Q ss_pred eeCCCCccceeEE-EeccEEEEeeccccCCCCC
Q psy9583 649 SNKSTNVKTEIIT-SIFDKLLIAIGRIPNTNNL 680 (866)
Q Consensus 649 ~~~~g~~~~~~~~-~~~D~vi~a~G~~p~~~~l 680 (866)
. ..+|.||++.|..|+.+.+
T Consensus 63 ------------~~~~~d~vV~Spgi~~~~p~~ 83 (326)
T 3eag_A 63 ------------DEFKADVYVIGNVAKRGMDVV 83 (326)
T ss_dssp ------------GSCCCSEEEECTTCCTTCHHH
T ss_pred ------------CCCCCCEEEECCCcCCCCHHH
Confidence 1 1479999999998877653
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.18 Score=46.18 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=30.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+++|+|+|.-|...|..|.+.|++|+++|++
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 57999999999999999999999999999985
|
| >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A | Back alignment and structure |
|---|
Probab=90.86 E-value=0.14 Score=47.90 Aligned_cols=60 Identities=13% Similarity=0.214 Sum_probs=51.3
Q ss_pred CeEEEEEEEeCCCCeeeC----CCeEEEEEecceeeEEecCCCeEEEEE-------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVR----NENLIDIETDKVILELPAPQDGIINKI------------------------------- 60 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~----g~~l~~ve~~k~~~~i~~~~~G~~~~~------------------------------- 60 (866)
-.|+|+.+ .++.|.|-. |+-++...++ ..+.||.+|+|..+
T Consensus 19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~ 94 (162)
T 1ax3_A 19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE 94 (162)
T ss_dssp CSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred CceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence 36999997 778888766 8888877763 57899999999988
Q ss_pred ----eecCCCEEecCCEEEEEec
Q psy9583 61 ----IITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 61 ----~~~~g~~v~~g~~l~~~~~ 79 (866)
++++||.|..|++|+.++.
T Consensus 95 gF~~~V~~Gd~V~~G~~L~~~d~ 117 (162)
T 1ax3_A 95 GFTSFVSEGDRVEPGQKLLEVDL 117 (162)
T ss_dssp TEEESCCCCSEECSEEEEEEECH
T ss_pred ccEEEEeCCCEEcCCCEEEEECH
Confidence 8899999999999999974
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.19 Score=46.00 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=30.6
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+++|+|.|.-|...|..|.+.|++|+++|++
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~ 39 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETS 39 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 57999999999999999999999999999986
|
| >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.24 Score=51.35 Aligned_cols=54 Identities=24% Similarity=0.193 Sum_probs=39.9
Q ss_pred CCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 26 KEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 26 ~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
+.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|+.++..
T Consensus 3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 56 (277)
T 2f1m_A 3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPA 56 (277)
T ss_dssp -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTCEECTTSCSEEECCH
T ss_pred eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCCEecCCCEEEEECcH
Confidence 334444444556677764 467899999999999999999999999999999853
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.73 E-value=0.2 Score=46.63 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=30.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+.+++|+|+|..|...|..|.+.|++|+++|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 367999999999999999999999999999985
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=90.60 E-value=0.16 Score=56.81 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=59.3
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINY 648 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~ 648 (866)
.++++.|||.|.+|+-+|..|.++|.+|++.+.++... + ...+.|++.|++++.+.....
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~---~-----~~~~~L~~~gi~~~~g~~~~~------------ 67 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE---N-----PTAQSLLEEGIKVVCGSHPLE------------ 67 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG---C-----HHHHHHHHTTCEEEESCCCGG------------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC---C-----hHHHHHHhCCCEEEECCChHH------------
Confidence 36899999999999999999999999999998865311 1 223567788999886553110
Q ss_pred eeCCCCccceeEEEe-ccEEEEeeccccCCCC
Q psy9583 649 SNKSTNVKTEIITSI-FDKLLIAIGRIPNTNN 679 (866)
Q Consensus 649 ~~~~g~~~~~~~~~~-~D~vi~a~G~~p~~~~ 679 (866)
. .-. +|.||++.|..++.+.
T Consensus 68 -----~------~~~~~d~vv~spgi~~~~p~ 88 (451)
T 3lk7_A 68 -----L------LDEDFCYMIKNPGIPYNNPM 88 (451)
T ss_dssp -----G------GGSCEEEEEECTTSCTTSHH
T ss_pred -----h------hcCCCCEEEECCcCCCCChh
Confidence 0 012 6999999999887654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=90.29 E-value=0.2 Score=43.87 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=30.0
Q ss_pred cceeeecCCccHHHHHHHHHHCC-CeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLG-FKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~ 422 (866)
.+|+|+|+|..|...+..|.+.| ++|+++++.
T Consensus 6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 57999999999999999999999 999999985
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=90.25 E-value=0.22 Score=56.34 Aligned_cols=61 Identities=28% Similarity=0.362 Sum_probs=46.9
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcc----------cHH--------HHHHHHHHHHHcCCEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV----------DEE--------IAKKAFHLLNKQGLNII 629 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~----------d~~--------~~~~l~~~l~~~GV~i~ 629 (866)
.+++|+|||+|.+|+.+|..|.+.|.+|+++++++++.... ..+ ....+.+.+++.|+++.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~ 110 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLN 110 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHTTCCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHHhCCCce
Confidence 36789999999999999999999999999999987764321 001 13456777888888653
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.92 E-value=0.24 Score=54.94 Aligned_cols=35 Identities=31% Similarity=0.573 Sum_probs=31.5
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
..++|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34689999999999999999999999999999876
|
| >2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=89.77 E-value=0.16 Score=41.14 Aligned_cols=31 Identities=23% Similarity=0.346 Sum_probs=28.2
Q ss_pred ecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 50 PAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 50 ~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
+++.+|+|.++++++|+.|..|++|+.++..
T Consensus 11 ~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~ 41 (77)
T 2l5t_A 11 EGVTEGEIVRWDVKEGDMVEKDQDLVEVMTD 41 (77)
T ss_dssp SSCCCEEEEECSCCTTCEECSCCCCCEEESS
T ss_pred CCCccEEEEEEEeCCCCEECCCCEEEEEEcc
Confidence 3578999999999999999999999999864
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.71 E-value=0.17 Score=53.82 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=46.4
Q ss_pred CCeEEEECCcHHHHHHHHHHHh--cCCcEEEEecCCcCCCc-------cc-HHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRR--LGSEVTILEMSSNFLNT-------VD-EEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~--~g~~Vtli~~~~~~l~~-------~d-~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
...|+|||+|+.|+-+|..|++ .|.+|+++++.+.+... ++ ..+...+.+.+++.|+++..+....
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~~~~~~ 140 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYV 140 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEECSSEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEECCcce
Confidence 4579999999999999999974 59999999987754211 00 1112234556778899887765443
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=89.59 E-value=0.8 Score=41.75 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=31.9
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
..++++|+|.|..|..+|..|.+.|.+|+++++.+
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence 45789999999999999999999999999998853
|
| >2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=89.34 E-value=0.31 Score=46.48 Aligned_cols=32 Identities=19% Similarity=0.315 Sum_probs=26.1
Q ss_pred EEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEE
Q psy9583 22 NWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINK 59 (866)
Q Consensus 22 ~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~ 59 (866)
..+|++|+.|++||.||+-. .|-|..+|++.+
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d 53 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 53 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence 56899999999999999753 677777787743
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=88.92 E-value=0.34 Score=53.58 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=31.6
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
+|+|||||..|+-+|..|++.|.+|+++++++++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~ 36 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 6899999999999999999999999999987654
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=88.83 E-value=0.34 Score=52.27 Aligned_cols=33 Identities=33% Similarity=0.582 Sum_probs=30.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
++|+|||||..|++.|..+++.|.+|+++++++
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 469999999999999999999999999999765
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.77 E-value=0.33 Score=54.45 Aligned_cols=35 Identities=23% Similarity=0.466 Sum_probs=32.4
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCCcC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNF 605 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~~~ 605 (866)
++|+|||||.+|+-+|..|++.|. +|+++++++++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~ 39 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL 39 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 589999999999999999999999 99999987765
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=88.67 E-value=0.5 Score=43.97 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=33.1
Q ss_pred cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc
Q psy9583 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604 (866)
Q Consensus 568 ~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~ 604 (866)
...++++|+|+|.+|..++..|.+.|.+|+++.+.+.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 3468999999999999999999999999999988654
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=88.56 E-value=0.35 Score=54.79 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=31.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhc-CCcEEEEecCCcCC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL-GSEVTILEMSSNFL 606 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~-g~~Vtli~~~~~~l 606 (866)
-.|+|||||.+|+-+|..|++. |.+|+++++++++.
T Consensus 11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G 47 (513)
T 4gde_A 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG 47 (513)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence 3699999999999999999874 99999999887764
|
| >3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} | Back alignment and structure |
|---|
Probab=88.52 E-value=0.33 Score=52.41 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=43.9
Q ss_pred CCCCeeeCCCeEEEEEec-ceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 26 KEGELVVRNENLIDIETD-KVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 26 ~~G~~v~~g~~l~~ve~~-k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
+.|+.-..-..-+.|+.+ .-...|.++.+|+|.++++++|+.|..|++|+.++..
T Consensus 36 ~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~~V~kGq~L~~ld~~ 91 (359)
T 3lnn_A 36 TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91 (359)
T ss_dssp EEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTCEECTTCEEEEEECS
T ss_pred eecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCCEEcCCCEEEEEChH
Confidence 333333344455677765 6678999999999999999999999999999999854
|
| >3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* | Back alignment and structure |
|---|
Probab=88.38 E-value=0.43 Score=39.63 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=27.3
Q ss_pred CCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 52 PQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 52 ~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
+.+|+|.++++++|+.|..|++|+.++...
T Consensus 17 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k 46 (87)
T 3crk_C 17 MTMGTVQRWEKKVGEKLSEGDLLAEIETDX 46 (87)
T ss_dssp CCEEEEEEECSCTTCEECTTCEEEEEECSS
T ss_pred CCcEEEEEEEcCCCCEEcCCCEEEEEECCc
Confidence 468999999999999999999999999654
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=88.27 E-value=0.32 Score=44.25 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=30.0
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+|+|+|+|..|...|..|.+.|++|+++|+.
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999999999999999999999999999985
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=88.23 E-value=0.44 Score=51.58 Aligned_cols=37 Identities=43% Similarity=0.779 Sum_probs=33.5
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecC-CcC
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS-SNF 605 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~-~~~ 605 (866)
.+.+|+|||+|..|+-+|..|.+.|.+|++++++ +++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v 80 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV 80 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence 3578999999999999999999999999999998 554
|
| >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A | Back alignment and structure |
|---|
Probab=88.18 E-value=0.28 Score=39.92 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=27.8
Q ss_pred cCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 51 APQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 51 ~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
++.+|+|.++++++|+.|..|++|+.++...
T Consensus 12 ~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k 42 (79)
T 1ghj_A 12 SIADGTVATWHKKPGEAVKRDELIVDIETDK 42 (79)
T ss_dssp SCSCEEECCCSSCTTSEECSSCEEEEEECSS
T ss_pred CCCCEEEEEEEcCCCCEECCCCEEEEEEccc
Confidence 3579999999999999999999999998643
|
| >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 | Back alignment and structure |
|---|
Probab=88.13 E-value=0.63 Score=37.81 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=26.1
Q ss_pred CeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 54 DGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 54 ~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
+|+|.++++++|+.|..|++|+.++...
T Consensus 14 ~G~v~~~~v~~G~~V~~G~~l~~ie~~~ 41 (80)
T 1qjo_A 14 EVEVTEVMVKVGDKVAAEQSLITVEGDK 41 (80)
T ss_dssp CEEEEECCCCTTCEECBTSEEEEEESSS
T ss_pred CEEEEEEEcCCCCEECCCCEEEEEEcCC
Confidence 8999999999999999999999998643
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=88.01 E-value=0.42 Score=52.66 Aligned_cols=36 Identities=36% Similarity=0.597 Sum_probs=33.3
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcC-CcEEEEecCCcC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLG-SEVTILEMSSNF 605 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g-~~Vtli~~~~~~ 605 (866)
..+|+|||+|..|+-+|..|++.| .+|+++++++++
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~ 42 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 468999999999999999999999 899999998776
|
| >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.80 E-value=0.54 Score=50.21 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=42.6
Q ss_pred eCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 25 KKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 25 ~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
++.|+.-..=..-+.|+.. -...|.++.+|+|.++++++|+.|..|++|+.++..
T Consensus 11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~~V~kG~~L~~ld~~ 65 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPE 65 (341)
T ss_dssp --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTCEECTTCEEEEECCH
T ss_pred EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCCEECCCCEEEEEChH
Confidence 4455544444455677665 467899999999999999999999999999999853
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=87.68 E-value=0.42 Score=51.86 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=31.2
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~ 604 (866)
.+|+|||||..|+-+|..|++.|.+|+++++.+.
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~ 37 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3699999999999999999999999999998754
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=87.54 E-value=0.45 Score=54.10 Aligned_cols=35 Identities=37% Similarity=0.604 Sum_probs=32.0
Q ss_pred CeEEEECCcHHHHHHHHHHHhcC-CcEEEEecCCcC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLG-SEVTILEMSSNF 605 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g-~~Vtli~~~~~~ 605 (866)
.+|+|||+|..|+-+|..|.+.| .+|+++++++++
T Consensus 9 ~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri 44 (516)
T 1rsg_A 9 KKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV 44 (516)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 57999999999999999999999 999999987654
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=87.53 E-value=0.45 Score=53.16 Aligned_cols=37 Identities=11% Similarity=0.278 Sum_probs=34.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~ 607 (866)
.+|+|||+|..|+-+|..|++.|.+|+++++++++..
T Consensus 12 ~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG 48 (453)
T 2bcg_G 12 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGG 48 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCc
Confidence 5799999999999999999999999999999988753
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=87.49 E-value=0.5 Score=53.23 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=33.6
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l 606 (866)
..+|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~G 47 (489)
T 2jae_A 11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPG 47 (489)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCC
Confidence 5689999999999999999999999999999887653
|
| >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.39 E-value=0.61 Score=39.70 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=26.7
Q ss_pred CCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 53 QDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 53 ~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
..|+|.++++++||.|..|++|+.++...
T Consensus 20 ~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K 48 (98)
T 2dnc_A 20 EEGNIVKWLKKEGEAVSAGDALCEIETDK 48 (98)
T ss_dssp SEECEEEESSCTTCEECTTSEEEEEECSS
T ss_pred ccEEEEEEEcCCCCEeCCCCEEEEEEccc
Confidence 58999999999999999999999999654
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=87.19 E-value=0.5 Score=50.84 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=30.6
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~ 602 (866)
..+|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 357999999999999999999999999999975
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=87.19 E-value=0.31 Score=48.46 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=30.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
...|+|||||..|...+..|.+.|.+|+||++.
T Consensus 31 gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~ 63 (223)
T 3dfz_A 31 GRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT 63 (223)
T ss_dssp TCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence 478999999999999999999999999999875
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=87.19 E-value=1.2 Score=40.37 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~ 602 (866)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 368999999999999999999999999999874
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=87.10 E-value=0.48 Score=53.90 Aligned_cols=35 Identities=20% Similarity=0.474 Sum_probs=32.7
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
.+|+|||||..|+-+|..|++.|.+|+++++++++
T Consensus 5 ~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 39 (520)
T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 39 (520)
T ss_dssp CSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 57999999999999999999999999999998766
|
| >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A | Back alignment and structure |
|---|
Probab=87.01 E-value=0.67 Score=39.01 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=27.2
Q ss_pred CCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 52 PQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 52 ~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
..+|+|.++++++|+.|..|++|+.++...
T Consensus 16 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K 45 (93)
T 1k8m_A 16 IREVTVKEWYVKEGDTVSQFDSICEVQSDK 45 (93)
T ss_dssp SCCEEEEEECCCTTCEECSSSCCEEEECSS
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEEcCC
Confidence 368999999999999999999999998653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 866 | ||||
| d1scza_ | 233 | c.43.1.1 (A:) Dihydrolipoamide succinyltransferase | 9e-70 | |
| d1b5sa_ | 242 | c.43.1.1 (A:) Dihydrolipoamide acetyltransferase { | 6e-51 | |
| d3lada3 | 124 | d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenas | 4e-43 | |
| d1v59a3 | 123 | d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenas | 2e-42 | |
| d1dxla3 | 123 | d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenas | 6e-42 | |
| d3claa_ | 213 | c.43.1.1 (A:) Chloramphenicol acetyltransferase, C | 2e-41 | |
| d1q23a_ | 214 | c.43.1.1 (A:) Chloramphenicol acetyltransferase, C | 9e-41 | |
| d1dpba_ | 243 | c.43.1.1 (A:) Dihydrolipoamide acetyltransferase { | 4e-39 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 6e-36 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 4e-21 | |
| d1ojta3 | 128 | d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenas | 4e-35 | |
| d1ebda3 | 115 | d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenas | 1e-34 | |
| d1lvla3 | 123 | d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenas | 3e-33 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 4e-33 | |
| d1onfa1 | 259 | c.3.1.5 (A:1-153,A:271-376) Glutathione reductase | 1e-18 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 1e-32 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 6e-30 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 2e-32 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 2e-22 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 7e-32 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 4e-29 | |
| d1xdia2 | 118 | d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenas | 2e-31 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 2e-30 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 4e-21 | |
| d1mo9a3 | 140 | d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl c | 6e-30 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 2e-28 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 1e-25 | |
| d1feca3 | 128 | d.87.1.1 (A:358-485) Trypanothione reductase {Crit | 1e-27 | |
| d1h6va3 | 133 | d.87.1.1 (A:367-499) Mammalian thioredoxin reducta | 1e-27 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 2e-27 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 8e-25 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 2e-26 | |
| d1gesa3 | 115 | d.87.1.1 (A:336-450) Glutathione reductase {Escher | 2e-26 | |
| d1onfa3 | 119 | d.87.1.1 (A:377-495) Glutathione reductase {Plasmo | 4e-26 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 3e-25 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 2e-21 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 4e-25 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 6e-21 | |
| d3grsa3 | 115 | d.87.1.1 (A:364-478) Glutathione reductase {Human | 2e-24 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 9e-24 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 2e-17 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 2e-23 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 4e-23 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 3e-21 | |
| d1nhpa3 | 126 | d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus | 1e-22 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 1e-21 | |
| d1d5ta1 | 336 | c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di | 1e-21 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 2e-21 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 1e-20 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 2e-16 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 4e-20 | |
| d1h6va1 | 235 | c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin | 4e-15 | |
| d1laba_ | 80 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 9e-20 | |
| d1y8ob1 | 102 | b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa | 9e-20 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 1e-19 | |
| d1dxla2 | 123 | c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase | 4e-19 | |
| d1k8ma_ | 87 | b.84.1.1 (A:) Lipoyl domain of the mitochondrial b | 4e-19 | |
| d2gqfa1 | 253 | c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H | 1e-18 | |
| d1pmra_ | 80 | b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate | 3e-18 | |
| d1ojta2 | 125 | c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase | 7e-18 | |
| d3lada2 | 119 | c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase | 1e-17 | |
| d1ghja_ | 79 | b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate | 1e-17 | |
| d1v59a2 | 122 | c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase | 1e-16 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 2e-16 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 4e-16 | |
| d1h6va2 | 122 | c.3.1.5 (A:171-292) Mammalian thioredoxin reductas | 4e-16 | |
| d1djqa2 | 156 | c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, | 3e-15 | |
| d1gjxa_ | 81 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 9e-15 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 2e-14 | |
| d1qjoa_ | 80 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 2e-13 | |
| d3grsa2 | 125 | c.3.1.5 (A:166-290) Glutathione reductase {Human ( | 3e-13 | |
| d1ebda2 | 117 | c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase | 9e-13 | |
| d2bcgg1 | 297 | c.3.1.3 (G:5-301) Guanine nucleotide dissociation | 1e-12 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 7e-12 | |
| d2i0za1 | 251 | c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B | 1e-11 | |
| d1iyua_ | 79 | b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac | 1e-11 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 4e-11 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 5e-11 | |
| d1lvla2 | 115 | c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase | 9e-11 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 1e-10 | |
| d1aoga2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Trypa | 3e-10 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 7e-10 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 8e-10 | |
| d2cyua1 | 39 | a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa | 5e-09 | |
| d1w85i_ | 42 | a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl | 7e-09 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 8e-09 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 5e-05 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 2e-08 | |
| d2cula1 | 230 | c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T | 2e-08 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 3e-08 | |
| d1dcza_ | 77 | b.84.1.1 (A:) Biotin carboxyl carrier domain of tr | 3e-08 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 5e-08 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 3e-05 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 1e-07 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 4e-06 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 1e-07 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 2e-07 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 2e-07 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 1e-05 | |
| d1y0pa2 | 308 | c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 ( | 2e-07 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 3e-07 | |
| d1d4ca2 | 322 | c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 ( | 1e-06 | |
| d2v5za1 | 383 | c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H | 2e-06 | |
| d1ryia1 | 276 | c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO { | 2e-06 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 3e-06 | |
| d1w4xa1 | 298 | c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy | 4e-06 | |
| d1qo8a2 | 317 | c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 ( | 4e-06 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 4e-06 | |
| d2f5va1 | 379 | c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W | 6e-06 | |
| d2bs2a2 | 336 | c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo | 1e-05 | |
| d1bdoa_ | 80 | b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox | 2e-05 | |
| d1k0ia1 | 292 | c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr | 3e-05 | |
| d1neka2 | 330 | c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase | 6e-05 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 7e-05 | |
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 8e-05 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 9e-05 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 0.002 | |
| d2gmha1 | 380 | c.3.1.2 (A:4-236,A:336-482) Electron transfer flav | 9e-05 | |
| d3coxa1 | 370 | c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of | 1e-04 | |
| d2dw4a2 | 449 | c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist | 1e-04 | |
| d2gf3a1 | 281 | c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac | 1e-04 | |
| d1gpea1 | 391 | c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic | 1e-04 | |
| d1i8ta1 | 298 | c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu | 2e-04 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 2e-04 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 4e-04 | |
| d1chua2 | 305 | c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E | 4e-04 | |
| d1n4wa1 | 367 | c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of | 4e-04 | |
| d1nhpa2 | 123 | c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus | 5e-04 | |
| d1cf3a1 | 385 | c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper | 5e-04 | |
| d1pn0a1 | 360 | c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So | 7e-04 | |
| d1pj5a2 | 305 | c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox | 0.002 | |
| d1kf6a2 | 311 | c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es | 0.003 | |
| d1jnra2 | 356 | c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct | 0.003 | |
| d1kdga1 | 360 | c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain | 0.003 |
| >d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: CAT-like domain: Dihydrolipoamide succinyltransferase species: Escherichia coli [TaxId: 562]
Score = 228 bits (582), Expect = 9e-70
Identities = 130/219 (59%), Positives = 178/219 (81%)
Query: 167 SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKL 226
+R E+ VPM+RLR +AERLL+++ ++A+LTTFNE+NM+ I+DLR +Y + FEK H ++L
Sbjct: 1 ARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRL 60
Query: 227 GFMSFFVKAVVSALKQYPIINASVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSI 286
GFMSF+VKAVV ALK+YP +NAS+DG++++YH Y+D+ +A+S+ RGLV P+LR+ DT+ +
Sbjct: 61 GFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGM 120
Query: 287 ADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIK 346
ADIEKKI E K +D KL E+++GG FTI+NGGVFGS++STPIINPPQSAILG+HAIK
Sbjct: 121 ADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIK 180
Query: 347 KRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF 385
R + N V I P+ Y ALSYDHR+IDGRE+V L++
Sbjct: 181 DRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTI 219
|
| >d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: CAT-like domain: Dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 176 bits (448), Expect = 6e-51
Identities = 84/221 (38%), Positives = 130/221 (58%), Gaps = 3/221 (1%)
Query: 167 SRLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKL 226
E MS +R IA+ ++ S+ + +T +E ++ ++ R K E +KL
Sbjct: 11 EFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHR-KKFKAIAAEKGIKL 69
Query: 227 GFMSFFVKAVVSALKQYPIINASVDG--NNIIYHKYYDIGIAISSSRGLVVPILRNADTM 284
F+ + VKA+VSAL++YP++N S+D II YY+IGIA + RGL+VP++++AD
Sbjct: 70 TFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRK 129
Query: 285 SIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHA 344
I + ++INE KA+D KL P EM G + TI+N G G TP+IN P+ AILG+
Sbjct: 130 PIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGR 189
Query: 345 IKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF 385
I ++ IV + +V P+ +LS+DHR+IDG A +L
Sbjct: 190 IAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHI 230
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 150 bits (380), Expect = 4e-43
Identities = 59/122 (48%), Positives = 89/122 (72%)
Query: 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDM 803
++ +P VIYT PEIA VGKTEQ LK ++ NVG+FPF A+ RA +T+G VK+++D
Sbjct: 1 YDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADA 60
Query: 804 KSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRS 863
K+D +LG+H+IGP A+EL+ + IA+EF S+ED+ + HP+LSEA+ EAA+++ +
Sbjct: 61 KTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHA 120
Query: 864 IN 865
I+
Sbjct: 121 IH 122
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 148 bits (375), Expect = 2e-42
Identities = 68/122 (55%), Positives = 93/122 (76%)
Query: 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDM 803
+N +P V+Y+ PE+A VGKTE+ LK+ I Y +G FPF ANSRA+ +T G VKIL D
Sbjct: 1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDS 60
Query: 804 KSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRS 863
K++ ILG HIIGP A E+IAEA +A+E+ AS+ED+AR+CH HP+LSEA KEA M+ +++
Sbjct: 61 KTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKA 120
Query: 864 IN 865
I+
Sbjct: 121 IH 122
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 147 bits (371), Expect = 6e-42
Identities = 65/122 (53%), Positives = 97/122 (79%)
Query: 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDM 803
++ +P V+YT PE+ASVGKTE+ +K+ + Y VG FPF+ANSRA+ + G+VKI+++
Sbjct: 1 YDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEK 60
Query: 804 KSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRS 863
++D+ILG+HI+ P A ELI EA IA+++ ASSEDIAR+CH HP++SEA+KEAAM+ ++
Sbjct: 61 ETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKP 120
Query: 864 IN 865
I+
Sbjct: 121 IH 122
|
| >d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: CAT-like domain: Chloramphenicol acetyltransferase, CAT species: Escherichia coli [TaxId: 562]
Score = 148 bits (376), Expect = 2e-41
Identities = 15/189 (7%), Positives = 49/189 (25%), Gaps = 13/189 (6%)
Query: 197 TTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNII 256
+ ++I++ ++ + K F + + A+ Q+ + ++ + +I
Sbjct: 29 SLTSKIDITTLKKSL--------DDSAYK--FYPVMIYLIAQAVNQFDELRMAIKDDELI 78
Query: 257 YHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFT 316
D + L + I + + + + L +
Sbjct: 79 VWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENH 138
Query: 317 ISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGR 376
++ + + I + R + ++ H + DG
Sbjct: 139 LNISA-LPWVNFDSFNLNVANFTDYFAPIITMAKYQQEG--DRLLLPLSVQVHHAVCDGF 195
Query: 377 EAVLSLMSF 385
+
Sbjct: 196 HVARFINRL 204
|
| >d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: CAT-like domain: Chloramphenicol acetyltransferase, CAT species: Escherichia coli [TaxId: 562]
Score = 146 bits (371), Expect = 9e-41
Identities = 17/190 (8%), Positives = 50/190 (26%), Gaps = 16/190 (8%)
Query: 197 TTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNII 256
++++ + + K++ K F F+ + + +P ++ ++
Sbjct: 30 NQTVQLDITAFLKTV--------KKNKHK--FYPAFIHILARLMNAHPEFRMAMKDGELV 79
Query: 257 YHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLL-PEEMSGGTF 315
+ + L + ++ + +N P+ F
Sbjct: 80 IWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMF 139
Query: 316 TISNGGVFGSMLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDG 375
+S + + V + K + + + A+ H + DG
Sbjct: 140 FVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYTQGD-----KVLMPLAIQVHHAVCDG 194
Query: 376 REAVLSLMSF 385
L
Sbjct: 195 FHVGRMLNEL 204
|
| >d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: CAT-like domain: Dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Score = 143 bits (360), Expect = 4e-39
Identities = 72/218 (33%), Positives = 105/218 (48%), Gaps = 3/218 (1%)
Query: 170 EECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFM 229
E VPM+RL A L +S N +T F ++ + R+ K EK VKL +
Sbjct: 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEK-AGVKLTVL 73
Query: 230 SFFVKAVVSALKQYPIINASVDGNNI--IYHKYYDIGIAISSSRGLVVPILRNADTMSIA 287
+KA LK+ P N+S+ + I KY IG A+ + GL+VP++RN D S+
Sbjct: 74 PLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLL 133
Query: 288 DIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLSTPIINPPQSAILGVHAIKK 347
+ + E KA+ KL + M G FTIS+ G G TPI+N P+ AILGV
Sbjct: 134 QLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASM 193
Query: 348 RVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMSF 385
+ + + R + +LSYD R+I+G A
Sbjct: 194 QPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRL 231
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 133 bits (334), Expect = 6e-36
Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 27/233 (11%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
K++D I IG G GG + R A G K A I+ + LGGTC NVGC+P K +
Sbjct: 1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKE-------LGGTCVNVGCVPKKVMWH 53
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+ E + +YG +T N + ++ + I + ++ + KN + G
Sbjct: 54 AAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGF- 112
Query: 509 IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGAL---- 564
F + + + ETITA +I+IATG + P ++N+ L G
Sbjct: 113 -------ARFVDAKTLEVNGETITADHILIATGGRPS-HPREPANDNINLEAAGVKTNEK 164
Query: 565 EMINV-------PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVD 610
I V + + +G +E+ + G ++ ++ +D
Sbjct: 165 GYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHLD 217
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 90.8 bits (224), Expect = 4e-21
Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 46/210 (21%)
Query: 573 LCIIGAGVIGLEIGSIWRRLGSEVTILE--------MSSNFLNTVDEEIAKKAFHLLNKQ 624
IG G G+ + G + ++E ++ + A + ++
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64
Query: 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLI--------------- 669
G + +T I+ LI + ++ K +
Sbjct: 65 GPDYGFDTTINKFNWET---LIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTL 121
Query: 670 --------------------AIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIY 709
+ R P +N+N++ G+K NE +I+V+ TNI IY
Sbjct: 122 EVNGETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIY 181
Query: 710 AIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739
A+GD L A G ++E + K
Sbjct: 182 AVGDNTGAVELTPVAVAAGRRLSERLFNNK 211
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 127 bits (321), Expect = 4e-35
Identities = 39/120 (32%), Positives = 59/120 (49%)
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+P V YT PE+A VG+TE K FP+ A+ RA G K++ D ++
Sbjct: 3 VIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAET 62
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
I+G I+GP ++I E +AIE + DI + H HP+L E++ AA +
Sbjct: 63 GRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGTCTD 122
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 125 bits (316), Expect = 1e-34
Identities = 50/112 (44%), Positives = 66/112 (58%)
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
A+P V+++ PE ASVG EQ K I FPF AN RA L +T G +K++ +
Sbjct: 1 AIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKED 60
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAM 857
I+G IIGP AS++IAE +AIE ++EDIA H HP+L E EAA
Sbjct: 61 GVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAE 112
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 122 bits (306), Expect = 3e-33
Identities = 42/120 (35%), Positives = 64/120 (53%)
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
A+ V +T PE+ VGKT + + + V FPF AN RA L SG V++++ +
Sbjct: 3 AIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDN 62
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865
ILG +G SEL ++E A ED+A H HP+L EA++EAA+ +++
Sbjct: 63 HLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALH 122
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 126 bits (316), Expect = 4e-33
Identities = 58/297 (19%), Positives = 111/297 (37%), Gaps = 50/297 (16%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+D+IVIG G GG A+ R A+ K A +++ + LGGTC NVGC+P K + +
Sbjct: 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSR-------LGGTCVNVGCVPKKIMFNAA 54
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
+ ++NS + NL ++ER++ I++ N+ K+K+ + G A F
Sbjct: 55 SVHDILENSRHYGFDTKFSF--NLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASF 112
Query: 511 TGKIQNNFHEIQIINKT------KETITAKYIIIATGSKARSFPGVKFDENLI---LSNK 561
+ + + N +E + + I+IA G+K + L +
Sbjct: 113 LSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETN 172
Query: 562 GALEMINVPKKLCIIGAGVIG--LEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFH 619
+++ ++ + +G + + L +LN +
Sbjct: 173 NNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTE----- 227
Query: 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
+I N ++ + IN +L D+L + R N
Sbjct: 228 -------DIFYNVQLTPVAINAGRLL------------------ADRLFLKKTRKTN 259
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 84.3 bits (207), Expect = 1e-18
Identities = 38/258 (14%), Positives = 80/258 (31%), Gaps = 53/258 (20%)
Query: 573 LCIIGAGVIGLEIGSIWRRLGSEVTILEMSS----------------------------- 603
L +IG G G+ R ++V ++E S
Sbjct: 4 LIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENS 63
Query: 604 -----------------NFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLI 646
+ + + L+K +++ T +
Sbjct: 64 RHYGFDTKFSFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGT 123
Query: 647 NYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN----ENNFIIVNDNCE 702
+N N +LIA+G P + + + + L+ NN+I+V++N
Sbjct: 124 KDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQR 183
Query: 703 TNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFPEIASVGK 762
T++ NIYA+GD M+ E E + + + + +++ + I+ ++ V
Sbjct: 184 TSVNNIYAVGDCC---MVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAI 240
Query: 763 TEQYLKKHNISYNVGIFP 780
L +
Sbjct: 241 NAGRLLADRLFLKKTRKT 258
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 124 bits (311), Expect = 1e-32
Identities = 50/216 (23%), Positives = 85/216 (39%), Gaps = 45/216 (20%)
Query: 573 LCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV----------------------- 609
+ IIG G G +LG + T +E T
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH 65
Query: 610 --------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLI---------NYSNKS 652
+ ++ ++ + T+ + K V
Sbjct: 66 SFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISV 125
Query: 653 TNVKTEIITSIFDKLLIA-----IGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707
++ E ++IA GR P T+ LN+DKIG++ ++ I+VN+ TN+
Sbjct: 126 DTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSG 185
Query: 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSIN 743
+YAIGDV+ GPMLAHKAEE+G+ E+++G+ ++
Sbjct: 186 VYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGHVD 221
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 116 bits (290), Expect = 6e-30
Identities = 73/175 (41%), Positives = 99/175 (56%), Gaps = 11/175 (6%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447
+ DV++IG GPGGYVA+I+ AQLGFKT CI E+ ALGGTC NVGCIPSKALL
Sbjct: 1 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCI------EKRGALGGTCLNVGCIPSKALL 54
Query: 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
+SH + K+SF +G+ NV ++L M+ +K+ + GI LFKKNK+ + G+
Sbjct: 55 HSSHMYHEAKHSFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGY 114
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKG 562
F + + I+ N + +IIIATGS + F L L G
Sbjct: 115 GKFVSPSEISVDTIEGENTVVKGK---HIIIATGSDVKGR--TPFTSGLNLDKIG 164
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 123 bits (310), Expect = 2e-32
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 45/217 (20%)
Query: 573 LCIIGAGVIGLEIGSIWRRLGSEVTILE-----------------------MSSNFLNTV 609
++GAG G +LG +VTI+E
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHS 65
Query: 610 DEEIAKKAFHLLNKQGLNIILNTKIHDI--------------KINKENVLINYSNKSTNV 655
+E K ++ + + + + + E ++ +
Sbjct: 66 EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVN 125
Query: 656 KTEIITSIFDKLLIA--------IGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707
T F +IA +GR PNT+ L +++IG+K+ I V+ C T++PN
Sbjct: 126 GDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPN 185
Query: 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINF 744
I+AIGD+V GP LAHKA EG + AE I+G ++++
Sbjct: 186 IFAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDY 222
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 94.1 bits (233), Expect = 2e-22
Identities = 63/173 (36%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTS 450
+ +V+GAGPGGYVA+IR AQLG K +++ LGG C NVGCIPSKA L ++
Sbjct: 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-------LGGVCLNVGCIPSKA-LISA 55
Query: 451 HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
E GI +NVT++ K+ E K +++KK G+ L K NK++ G A F
Sbjct: 56 SHRYEQAKHSEEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYF 115
Query: 511 TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFD-ENLILSNKG 562
+ +T T K IIATGS+ G + + + L L G
Sbjct: 116 VDANTVRVV----NGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIG 164
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 122 bits (306), Expect = 7e-32
Identities = 71/226 (31%), Positives = 110/226 (48%), Gaps = 22/226 (9%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKAL 446
+NK+ DV++IG GP GYVA+I+ AQLGF TAC+ E+ LGGTC NVGCIPSKAL
Sbjct: 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACV------EKRGKLGGTCLNVGCIPSKAL 55
Query: 447 LQTSHSFENVKNSFFEYGINTQ-NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
L SH F + + GI+ ++ +N+ + K++ +K+ GI LFKKNK+ ++
Sbjct: 56 LNNSHLFHQMHTEAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYK 115
Query: 506 GHAIFTGKIQNNF---HEIQIINKTKETITAKYIIIATGSKARSFPGVK-FDENLILSNK 561
G+ F + + ++ K + K II+ATGS+ F G + + L
Sbjct: 116 GNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKI 175
Query: 562 G-----------ALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEV 596
G + + + ++G G + G
Sbjct: 176 GLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAA 221
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 114 bits (285), Expect = 4e-29
Identities = 49/226 (21%), Positives = 82/226 (36%), Gaps = 55/226 (24%)
Query: 573 LCIIGAGVIGLEIGSIWRRLGSEVTILEMSS-------------NFLNTVDEEIAKKAFH 619
+ IIG G G +LG +E + + + +
Sbjct: 8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHT 67
Query: 620 LLNKQGLNIILNTKIHDI-----------KINKENVLINYSNKSTNVKTE---------- 658
K+G+++ + KI+ ++ L+ NK T K
Sbjct: 68 EAQKRGIDVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIR 127
Query: 659 ---------------------IITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIV 697
II + ++ +GR P L +KIGL+V++ +++
Sbjct: 128 VTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVI 187
Query: 698 NDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSIN 743
+D + P+I +GDV GPMLAHKAEEEGI E + +N
Sbjct: 188 DDQFNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHGHVN 233
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 118 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 116 bits (292), Expect = 2e-31
Identities = 33/114 (28%), Positives = 63/114 (55%)
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKS 805
+ ++T PEIA+VG + + +++ + P N+RA++ G VKI +
Sbjct: 3 TVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRST 62
Query: 806 DEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI 859
++G ++ P+ASELI +A++ R + ++A+ V+PSLS ++ EAA +
Sbjct: 63 GVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRL 116
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (293), Expect = 2e-30
Identities = 39/217 (17%), Positives = 68/217 (31%), Gaps = 45/217 (20%)
Query: 573 LCIIGAGVIGLEIGSIWRRLGSEVTILE-------------------------------- 600
+IG G GL LG+ ++E
Sbjct: 6 YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH 65
Query: 601 ------------MSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINY 648
D +++ N + I + H + I
Sbjct: 66 ADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV 125
Query: 649 SNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNI 708
S K +I R+PNT +L+++K+G++ ++ IIV++ TN+ I
Sbjct: 126 SGKKYTAPHILIA-TGGMPSTPHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGI 184
Query: 709 YAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFN 745
YA+GDV +L A G +A + K +
Sbjct: 185 YAVGDVCGKALLTPVAIAAGRKLAHRLFEYKEDSKLD 221
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.7 bits (224), Expect = 4e-21
Identities = 48/205 (23%), Positives = 89/205 (43%), Gaps = 21/205 (10%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
++D +VIG G GG ++ R A+LG + A ++ K LGGTC NVGC+P K +
Sbjct: 2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHK-------LGGTCVNVGCVPKKVMWN 54
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
T+ E + + +YG + N + + E+++ + + N+ K+ I+ GHA
Sbjct: 55 TAVHSEFMHD-HADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHA 113
Query: 509 IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVK-------FDENLILSNK 561
I + + TA +I+IATG + ++ I ++
Sbjct: 114 ------AFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHERVPNTKDLSLNKLGIQTDD 167
Query: 562 GALEMINVPKKLCIIGAGVIGLEIG 586
+++ + + G +G G
Sbjct: 168 KGHIIVDEFQNTNVKGIYAVGDVCG 192
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 113 bits (283), Expect = 6e-30
Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 16/135 (11%)
Query: 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFP----------------FLANSRARI 789
P ++T E++ +G E+ + P + + +
Sbjct: 3 NYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKG 62
Query: 790 LGETSGMVKILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLS 849
SG KI+ D K+ ++LG H +G A + + I+ + +++ + + + +
Sbjct: 63 TAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPT 122
Query: 850 EAMKEAAMSIENRSI 864
++ + + ++++
Sbjct: 123 HFIQLSRLRAGSKNL 137
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 112 bits (280), Expect = 2e-28
Identities = 45/221 (20%), Positives = 76/221 (34%), Gaps = 50/221 (22%)
Query: 573 LCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN---------------------------- 604
+ ++G G G G +V I+E
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRH 68
Query: 605 --------------------FLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENV 644
+ + V + + + +++I + E
Sbjct: 69 LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVS 128
Query: 645 LINYSNKSTNVKTEIITSIF--DKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE 702
L T + + ++ A R PN ++ +K G+ V + FI V+
Sbjct: 129 LTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMR 188
Query: 703 TNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSIN 743
TN+P+IYAIGD+V PMLAHKA EG + AE+ +G K +
Sbjct: 189 TNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYFD 229
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 104 bits (259), Expect = 1e-25
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447
+ +DV+V+G GPGGY A+ A G K A ++ +K LGG C NVGCIPSKALL
Sbjct: 4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK------TLGGVCLNVGCIPSKALL 57
Query: 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
+ + V++ GI L++ + K+ ++ + G+ + K K+ G
Sbjct: 58 HNAAVIDEVRH-LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGD 116
Query: 508 AIFTGKIQNNFH 519
F
Sbjct: 117 GQFLDPHHLEVS 128
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 128 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 106 bits (266), Expect = 1e-27
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRA-RILGETSGMVKILSDM 803
+ +++ P + G E+ K V F MV+I+++
Sbjct: 2 TKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNH 61
Query: 804 KSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEA---MKEAAMSIE 860
E+LG+H++G + E+I I ++ A D VHP+ +E M+ A E
Sbjct: 62 ADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYFYE 121
Query: 861 NR 862
Sbjct: 122 KG 123
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 106 bits (266), Expect = 1e-27
Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Query: 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGI---FPFLANSRARILGETSGMVKIL 800
++ +P ++T E G +E+ + N+ + F + K++
Sbjct: 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVI 60
Query: 801 SDMK-SDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSI 859
++K ++ ++G H++GP A E+ A++ + + + +HP +E +S+
Sbjct: 61 CNLKDNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIF--TTLSV 118
Query: 860 ENRS 863
RS
Sbjct: 119 TKRS 122
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 109 bits (272), Expect = 2e-27
Identities = 76/221 (34%), Positives = 110/221 (49%), Gaps = 14/221 (6%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447
++ FDVIVIGAGPGGYVA+I+ AQLG KTA I+++K E ALGGTC NVGCIPSKALL
Sbjct: 1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALL 60
Query: 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
+S+ F SF +GI+T V +++ M+ RK+ I++ G+ L K N + F GH
Sbjct: 61 DSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGH 120
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKG----- 562
+ + + + + +I+A+GSK P +L+ ++ G
Sbjct: 121 GKLLAGKKVEVTAADG---SSQVLDTENVILASGSKPVEIPRRPVTTDLLAADSGVTLDE 177
Query: 563 ------ALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVT 597
+ IG V G + G V
Sbjct: 178 RGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVA 218
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 101 bits (252), Expect = 8e-25
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 609 VDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLL 668
+ + L+ G+ + E + S++ + + I+
Sbjct: 97 IVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVIL--ASGSKP 154
Query: 669 IAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEG 728
+ I R P T +L G+ ++E FI V+D C T++P +YAIGDVVRG MLAHKA EEG
Sbjct: 155 VEIPRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAMLAHKASEEG 214
Query: 729 IMVAEHISGQKHSIN 743
++VAE I+G K +N
Sbjct: 215 VVVAERIAGHKAQMN 229
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 109 bits (271), Expect = 2e-26
Identities = 52/352 (14%), Positives = 101/352 (28%), Gaps = 19/352 (5%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
VIV+GAG G A+ RL++ G I E D +GG + ++
Sbjct: 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD-----HIGGRMHKTN-FAGINVELGAN 55
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFT 511
E V N TL L+ + + + ++ ++ ++ A
Sbjct: 56 WVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSV 115
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPK 571
++ + I+A P ++ + +
Sbjct: 116 EEMGEKLSATL-----HASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEP 170
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
+ L S + V + + + K + LN
Sbjct: 171 PRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLN 230
Query: 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE 691
+ +IK + V + + S ++ S +L + I L K+ + +
Sbjct: 231 KVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQS-DLIQFKPKLPTWKVRA-IYQ 288
Query: 692 NNFIIVN----DNCETNIPNIYAIGDV--VRGPMLAHKAEEEGIMVAEHISG 737
+ VN D + +Y G+ H A GI AE +
Sbjct: 289 FWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 340
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 102 bits (254), Expect = 2e-26
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIF--PFLANSRARILGETSGMVKILS 801
++ +P V+++ P I +VG TE ++ V ++ F A A +K++
Sbjct: 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVC 60
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAM 852
++I+GIH IG E++ +A++ A+ +D +HP+ +E
Sbjct: 61 VGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEF 111
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 101 bits (253), Expect = 4e-26
Identities = 27/115 (23%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGI------FPFLANSRARILGETSGMV 797
+ +P VI++ P I ++G +E+ + NV I F + + +
Sbjct: 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYL 60
Query: 798 KILSDMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAM 852
K++ K + I G+HIIG A E++ +A++ A+ +D +HP+ +E
Sbjct: 61 KLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEF 115
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 103 bits (257), Expect = 3e-25
Identities = 42/220 (19%), Positives = 80/220 (36%), Gaps = 48/220 (21%)
Query: 568 NVPKK--LCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV--DEEIAKKAFHL--- 620
N P++ IG G G + R +G I++ + + + F
Sbjct: 38 NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAA 97
Query: 621 -------LNKQGLNIILNTKIHDIK---------INKENVLINYSNKSTNVKTEIITS-- 662
+ Q + K+ IK N + ++N+ +K I+
Sbjct: 98 ELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPA 157
Query: 663 ---------------IFDKLLIAIGRIPNTNNLNIDKIG--------LKVNENNFIIVND 699
L++A+G P T ++ L + ++VN+
Sbjct: 158 KVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNE 217
Query: 700 NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739
+T++PN+YA+GD++ GPM KA + G A ++ G+K
Sbjct: 218 YLQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEK 257
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 92.3 bits (228), Expect = 2e-21
Identities = 33/193 (17%), Positives = 67/193 (34%), Gaps = 20/193 (10%)
Query: 361 INYFALSYDH--RIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTAC 418
IN +A D DG E + ++ + +D I IG G G S L +G +
Sbjct: 12 INQWATRIDEILEAPDGGEVIYNVDE-NDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLI 70
Query: 419 IDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKN-SFFEYGINTQNVTLNLQKM 477
+D W LGG+C + C+P + + S + + + ++++
Sbjct: 71 VDRWPF------LGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEV 124
Query: 478 LERKNNIIKKNNSGILF--LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKY 535
++ + + F + N + A + + + AK
Sbjct: 125 VDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPA--------KVIDNHTVEAAGKVFKAKN 176
Query: 536 IIIATGSKARSFP 548
+I+A G+ +
Sbjct: 177 LILAVGAGPGTLD 189
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 102 bits (255), Expect = 4e-25
Identities = 50/246 (20%), Positives = 95/246 (38%), Gaps = 20/246 (8%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDN---EENFALGGTCTNVGCIPSK 444
++ +D++VIGAG GG A A L K + + + + ALGGTC NVGC+P K
Sbjct: 1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKK 60
Query: 445 ALLQTS-HSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF-LFKKNKIK 502
++ + + +++ F + ++ ++V N + ++ KN + N +
Sbjct: 61 LMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLT 120
Query: 503 FFHGHAIFTGKIQNNF-HEIQIINKTKETITAKYIIIATGSKARSFP-GVKFDENLILSN 560
F G + ET+ +YI++ATGS + V + L L
Sbjct: 121 FHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPRSQTLQLEK 180
Query: 561 KGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS--NFLNTVDEEIAKKAF 618
G + + G I ++ S + + I +++ E A
Sbjct: 181 AG----------VEVAKNGAIKVDAYS-KTNVDNIYAIGDVTDRVMLTPVAINEGAAFVD 229
Query: 619 HLLNKQ 624
+ +
Sbjct: 230 TVFANK 235
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 90.8 bits (224), Expect = 6e-21
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%)
Query: 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN--------NLNID 683
T ++N + + + T + +L+A G P L ++
Sbjct: 120 TFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVPRSQTLQLE 179
Query: 684 KIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739
K G++V +N I V+ +TN+ NIYAIGDV ML A EG + + K
Sbjct: 180 KAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 235
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 96.4 bits (239), Expect = 2e-24
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYN--VGIFPFLANSRARILGETSGMVKILS 801
+N +P V+++ P I +VG TE N F A +T ++K++
Sbjct: 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVC 60
Query: 802 DMKSDEILGIHIIGPMASELIAEAVIAIEFRASSEDIARICHVHPSLSEAM 852
K ++++GIH+ G E++ +A++ A+ D +HP+ SE +
Sbjct: 61 ANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEEL 111
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 99.0 bits (245), Expect = 9e-24
Identities = 50/243 (20%), Positives = 89/243 (36%), Gaps = 15/243 (6%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNE---ENFALGGTCTNVGCIPSK 444
+K FD++VIGAG GG A+ A L K + + + ALGGTC NVGC+P K
Sbjct: 1 SKIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKK 60
Query: 445 ALLQTSHSFENVKN-SFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLF-KKNKIK 502
++ + E+++ + F + + + + ++ K+ + N +F ++
Sbjct: 61 LMVTGAQYMEHLRESAGFGWEFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLE 120
Query: 503 FFHGHAIFTGKIQNNFHE-IQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNK 561
FF G K N E + KE + ++I++A+GS G
Sbjct: 121 FFLGWGSLESKNVVNVRESADPASAVKERLETEHILLASGSWPHMPNGRSPRTK------ 174
Query: 562 GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLL 621
++ + I GV E + + E A +
Sbjct: 175 ---DLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVF 231
Query: 622 NKQ 624
Sbjct: 232 GTT 234
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 80.1 bits (196), Expect = 2e-17
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 4/136 (2%)
Query: 607 NTVDEEIAKKAFHLLNKQGLNIIL---NTKIHDIKINKENVLINYSNKSTNVKTEIITSI 663
V + +GL L + + ++ +E+ + K I+ +
Sbjct: 100 EAVLNINKSYDEMFRDTEGLEFFLGWGSLESKNVVNVRESADPASAVKERLETEHILLAS 159
Query: 664 FDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHK 723
+ GR P T +L + G+ + +N + V++ TN+ NIYAIGDV ML
Sbjct: 160 GSWPHMPNGRSPRTKDLQLQNAGVMI-KNGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPV 218
Query: 724 AEEEGIMVAEHISGQK 739
A E + + + G
Sbjct: 219 AINEAAALVDTVFGTT 234
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 99.2 bits (246), Expect = 2e-23
Identities = 38/266 (14%), Positives = 82/266 (30%), Gaps = 29/266 (10%)
Query: 384 SFIMNKNFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWKDNEENFALGGTCTNVGCIP 442
I DV+V+GAG G A+ +++ + A I E++ + GG G +
Sbjct: 27 DMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAII------EQSVSPGGGAWLGGQLF 80
Query: 443 SKALLQTSHSFE--------NVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF 494
S +++ + ++++ + + K+L R N + +
Sbjct: 81 SAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDL 140
Query: 495 LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDE 554
+ K N++ + + + AK ++ + G
Sbjct: 141 IVKGNRVGGVVTNWALV-----AQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATGVKRL 195
Query: 555 NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNFLNTVDE 611
I M + I + + G EV ++ + T
Sbjct: 196 KSIGMIDHVPGMKALD---MNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGA 252
Query: 612 EIA--KKAFHL-LNKQGLNIILNTKI 634
+ +KA L L GL ++ +
Sbjct: 253 MMISGQKAGQLALKALGLPNAIDGTL 278
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 96.2 bits (238), Expect = 4e-23
Identities = 52/214 (24%), Positives = 87/214 (40%), Gaps = 9/214 (4%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQT 449
+++IG GPGGYVA+IR QLG T + E ALGGTC N+GCIPSKAL+
Sbjct: 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLV-------EGQALGGTCLNIGCIPSKALIHV 57
Query: 450 SHSFENVKNSFFEYG--INTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
+ F I+ + L++ + + K+ I+ + +G+ L KK+ +K HG
Sbjct: 58 AEQFHQASRFTEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGW 117
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMI 567
A Q +I + T + ++ + + A++
Sbjct: 118 AKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDER 177
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEM 601
+ G + E R + + E+
Sbjct: 178 CQTSMHNVWAIGDVAGEPMLAHRAMAQGEMVAEI 211
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 91.2 bits (225), Expect = 3e-21
Identities = 39/218 (17%), Positives = 75/218 (34%), Gaps = 44/218 (20%)
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILE--------MSSNFLNTVDEEIAKKAFH 619
+ L IIG G G +LG ++E ++ + + + FH
Sbjct: 3 TIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFH 62
Query: 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLI---------- 669
++ L + +++ + + + + T + ++ K +
Sbjct: 63 QASRFTEPSPLGISVASPRLDIGQS-VAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVL 121
Query: 670 -------------------AIGRIPNTNNLNIDKIGLKVN------ENNFIIVNDNCETN 704
A G G + I +++ C+T+
Sbjct: 122 DGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTS 181
Query: 705 IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSI 742
+ N++AIGDV PMLAH+A +G MVAE I+G+
Sbjct: 182 MHNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRF 219
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 126 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 91.9 bits (228), Expect = 1e-22
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 755 PEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHII 814
+ AS G E +K + K++ D ++ +ILG ++
Sbjct: 13 YKFASTGINEVMAQKLGKETKAVTVVE-DYLMDFNPDKQKAWFKLVYDPETTQILGAQLM 71
Query: 815 GP-MASELIAEAVIAIEFRASSEDIARICHV-HPSLSEAM---KEAAMSIENR 862
+ I +AI+ + + ED+A P+ + AA+ +
Sbjct: 72 SKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEAVKQ 124
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 95.7 bits (236), Expect = 1e-21
Identities = 48/371 (12%), Positives = 107/371 (28%), Gaps = 37/371 (9%)
Query: 393 VIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHS 452
V VIGAG G A+ +L G E GG +V + +++
Sbjct: 4 VAVIGAGVSGLAAAYKLKIHGLNVTVF------EAEGKAGGKLRSVS-QDGLIWDEGANT 56
Query: 453 F----ENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+V G+ + Q N K+
Sbjct: 57 MTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKL 116
Query: 509 IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMIN 568
+ ++ + + G + + F + +L M +
Sbjct: 117 QMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHH 176
Query: 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ---- 624
+L + + +G+I +L + + + +F +
Sbjct: 177 SFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLTDA 236
Query: 625 ------GLNIILNTKIHDIKINKENVLINYSNK---STNVKTEIITSIFDKLLIAIGRIP 675
+ LN+++ ++ + S ++ K + FD +++ +
Sbjct: 237 ICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAP-LC 295
Query: 676 NTNNLNIDKIGLK-----------VNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKA 724
+ ++ I K G N ++ + D E N+P ++ G+ G + KA
Sbjct: 296 DVKSMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLSV-GKA 354
Query: 725 EEEGIMVAEHI 735
G A+ +
Sbjct: 355 LSSGCNAADLV 365
|
| >d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Cow (Bos taurus) [TaxId: 9913]
Score = 94.9 bits (234), Expect = 1e-21
Identities = 42/339 (12%), Positives = 86/339 (25%), Gaps = 30/339 (8%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT---------N 437
M++ +DVIV+G G + S ++ G K + + N GG +
Sbjct: 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHM------DRNPYYGGESSSITPLEELYK 56
Query: 438 VGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFK 497
+ + + ++ + + + E + K G
Sbjct: 57 RFQLLEGPPETMGRGRDWNVDLIPKF-LMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKG 115
Query: 498 KNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLI 557
K E + K + + +
Sbjct: 116 GKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYR 175
Query: 558 LSNKGALEMINVPKKLCIIGAGVIGLE-----IGSIWRRLGSEVTILEMSSNFLNTVDEE 612
+ G + L + + I I S + + E
Sbjct: 176 KFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGE 235
Query: 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG 672
+ + L G +LN + DI + V+ S E+ +L+
Sbjct: 236 LPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEG------EVARC--KQLICDPS 287
Query: 673 RIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAI 711
+P+ D +V + + ET +I I
Sbjct: 288 YVPD-RVPIDDGSESQVFCSCSYDATTHFETTCNDIKDI 325
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 90.2 bits (222), Expect = 2e-21
Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 12/178 (6%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
+ ++GAG+ + + R+ G + I + D K F +
Sbjct: 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRL 62
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEI-ITSIFDKLLIAIGRIPNTNNLNI-DKIGL 687
+ +++ ++ ++ V T + L++A G P N
Sbjct: 63 DCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAA 122
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVVRGPM----------LAHKAEEEGIMVAEHI 735
+ ++ I V+ T P++YA+GDV R A+ +GI VA H+
Sbjct: 123 GLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHL 180
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 89.4 bits (220), Expect = 1e-20
Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 21/219 (9%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
++++G GP GY A++ A +T + + +GG C+PSK + ++
Sbjct: 3 RIVILGGGPAGYEAALVAATSHPETTQVTVI----DCDGIGGAAVLDDCVPSKTFIASTG 58
Query: 452 SFENVK-NSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF 510
++ + I+ + ++L ++ R + ++ I ++ G
Sbjct: 59 LRTELRRAPHLGFHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGEL 118
Query: 511 TGKIQ---NNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSN------- 560
+ + + + A +++ATG+ R P L
Sbjct: 119 IDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILPSGSVPNTSGLGLERVGIQL 178
Query: 561 --KGALEMINVPKKLC--IIGAG--VIGLEIGSIWRRLG 593
L + V + L I AG L + S+ G
Sbjct: 179 GRGNYLTVDRVSRTLATGIYAAGDCTGLLPLASVAAMQG 217
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 77.0 bits (188), Expect = 2e-16
Identities = 20/81 (24%), Positives = 40/81 (49%)
Query: 659 IITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGP 718
++ + ++ G +PNT+ L ++++G+++ N++ V+ T IYA GD
Sbjct: 148 LVATGASPRILPSGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 207
Query: 719 MLAHKAEEEGIMVAEHISGQK 739
LA A +G + H G+
Sbjct: 208 PLASVAAMQGRIAMYHALGEG 228
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 87.9 bits (216), Expect = 4e-20
Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 5/161 (3%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDN--EENFALGGTCTNVGCIPSKALL 447
+FD+I+IG G GG A+ A+ K +D N+ LGGTC NVGCIP K +
Sbjct: 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMH 62
Query: 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
Q + + +K+S V + +KM E N I N G ++ K+ + + +
Sbjct: 63 QAALLGQALKDSRNYGWKLEDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAY 122
Query: 508 AIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548
F G + + K +IATG + R
Sbjct: 123 GKFIGPHKIMATNNKGKEKVYSAE---RFLIATGERPRYLG 160
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.6 bits (179), Expect = 4e-15
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 690 NENNFIIVNDNCETNIPNIYAIGDVVRGPM-LAHKAEEEGIMVAEHISGQK 739
+ I V D +TN+P IYAIGD++ G + L A + G ++A+ + G
Sbjct: 180 EKTGKIPVTDEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGS 230
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 82.1 bits (203), Expect = 9e-20
Identities = 22/77 (28%), Positives = 45/77 (58%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
E K+P + E I E ++ W K G+ V ++ L +++ DK ++E+P+P G + +I++
Sbjct: 2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVP 61
Query: 64 DGSIVTSNQVIALIDTD 80
+G++ T Q + +D
Sbjct: 62 EGTVATVGQTLITLDAP 78
|
| >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.0 bits (205), Expect = 9e-20
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
++V +P LS +++ T+ W KK GE + + L +IETDK + ++G + KI++
Sbjct: 6 MQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVP 65
Query: 64 DGS-IVTSNQVIALIDTDISKLSSKTEIKNKK--DIK 97
+G+ V + +I + +S+ + + + D+K
Sbjct: 66 EGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLK 102
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 85.2 bits (209), Expect = 1e-19
Identities = 35/187 (18%), Positives = 69/187 (36%), Gaps = 18/187 (9%)
Query: 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS------NFLNTVDEEIAKKAFHLL 621
N + I+G G+ G+E+ R G E I + + +A KA
Sbjct: 1 NANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAES 60
Query: 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN 681
+ + + IN ++ + ++ +D+L++A G P N
Sbjct: 61 LYLRTPDAYAAQNIQLLGGTQVTAINR-DRQQVILSDGRALDYDRLVLATGGRPLIPNCE 119
Query: 682 IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPM----------LAHKAEEEGIMV 731
+ + +N I++N++ +T+ P I A+GD R A E+ +
Sbjct: 120 LAS-AAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKI 178
Query: 732 AEHISGQ 738
A + G+
Sbjct: 179 AAILCGK 185
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 81.8 bits (201), Expect = 4e-19
Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 546 SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605
S PGV DE I+S+ GAL + +PKKL +IGAG IGLE+GS+W R+GSEVT++E +S
Sbjct: 1 SLPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI 60
Query: 606 LNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665
+ T+D EI K+ L KQG+ L TK+ + + + V + + +T I D
Sbjct: 61 VPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTII---EAD 117
Query: 666 KLLIA 670
+L++
Sbjct: 118 VVLVS 122
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.6 bits (199), Expect = 4e-19
Identities = 19/78 (24%), Positives = 44/78 (56%)
Query: 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62
+++ K+ + E I E T+ W+ KEG+ V + +++ ++++DK + + + DG+I K+
Sbjct: 4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYY 63
Query: 63 TDGSIVTSNQVIALIDTD 80
I + + I+T+
Sbjct: 64 NLDDIAYVGKPLVDIETE 81
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Score = 84.6 bits (208), Expect = 1e-18
Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 10/173 (5%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGT----CTNVGCIP 442
M++ + I+IGAG G + +LA+LG D K + G TN+ P
Sbjct: 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTP 60
Query: 443 SKALLQTSHSFENVKNSFF-----EYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFK 497
+ L Q H ++ + + + ++ +
Sbjct: 61 AHYLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECD 120
Query: 498 KNKIKFFHGHAIFTGKIQNNFHEIQIINKT-KETITAKYIIIATGSKARSFPG 549
K K + + N +++ + + K +I+ATG + G
Sbjct: 121 KYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLG 173
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Score = 77.9 bits (192), Expect = 3e-18
Identities = 34/75 (45%), Positives = 57/75 (76%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
+++ +P L ES+++AT+ WHKK G+ VVR+E L++IETDKV+LE+PA DGI++ ++
Sbjct: 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLED 62
Query: 64 DGSIVTSNQVIALID 78
+G+ VTS Q++ +
Sbjct: 63 EGTTVTSRQILGRLR 77
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 78.3 bits (192), Expect = 7e-18
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Query: 546 SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605
P + D I+ + GAL + VP KL IIG G+IGLE+G+++ LGS + ++EM
Sbjct: 3 KLPFIPEDPR-IIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL 61
Query: 606 LNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD 665
+ D ++ K + NI++NTK ++ ++ V + + N E +D
Sbjct: 62 MQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGA--NAPKEPQR--YD 117
Query: 666 KLLIAIGR 673
+L+A GR
Sbjct: 118 AVLVAAGR 125
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 77.5 bits (190), Expect = 1e-17
Identities = 52/121 (42%), Positives = 79/121 (65%), Gaps = 5/121 (4%)
Query: 552 FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDE 611
D+++I+ + GAL+ NVP KL +IGAGVIGLE+GS+W RLG+EVT+LE FL VDE
Sbjct: 4 VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDE 63
Query: 612 EIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAI 671
++AK+A +L KQGL I+L ++ ++ + V + + + FDKL++A+
Sbjct: 64 QVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQA-----FDKLIVAV 118
Query: 672 G 672
G
Sbjct: 119 G 119
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Score = 76.0 bits (187), Expect = 1e-17
Identities = 32/77 (41%), Positives = 51/77 (66%)
Query: 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIIT 63
I++K P ESI++ T+ WHKK GE V R+E ++DIETDKV++E+ A DG+I +I+
Sbjct: 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKN 61
Query: 64 DGSIVTSNQVIALIDTD 80
+G V S +++ +
Sbjct: 62 EGDTVLSGELLGKLTEG 78
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.8 bits (183), Expect = 1e-16
Identities = 49/124 (39%), Positives = 76/124 (61%), Gaps = 3/124 (2%)
Query: 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607
PG++ DE I+S+ GAL + +PK+L IIG G+IGLE+GS++ RLGS+VT++E
Sbjct: 1 PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA 60
Query: 608 TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKST-NVKTEIITSIFDK 666
++D E+AK L KQGL+ L+TK+ K N + ++ + T K E + +
Sbjct: 61 SMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLE--AEV 118
Query: 667 LLIA 670
LL+A
Sbjct: 119 LLVA 122
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 75.5 bits (184), Expect = 2e-16
Identities = 34/172 (19%), Positives = 63/172 (36%), Gaps = 11/172 (6%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
K+ I+G G G E+ + EVT+++ + A + + L+
Sbjct: 2 KVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 632 TKI-HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVN 690
I+I V TE +D L++A G ++
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSG-----IH 115
Query: 691 ENNFIIVNDNCETNIPNIYAIGDVVRGPM----LAHKAEEEGIMVAEHISGQ 738
I+++DN T+ ++YAIGD A A E+ ++A+ + G+
Sbjct: 116 TGRGILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGE 167
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 75.2 bits (183), Expect = 4e-16
Identities = 21/178 (11%), Positives = 50/178 (28%), Gaps = 13/178 (7%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
+K+ ++G G G + EVT++E ++++ L
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61
Query: 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
++ +K +D+ ++A G + + +
Sbjct: 62 YDGLRAHGIQVVHDSAT-GIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKI 120
Query: 688 KVNENNF-------IIVNDNCETNIPNIYAIGDVVRG---PMLAHKAEEEGIMVAEHI 735
+ + + I+ IGD P + A +G + A +
Sbjct: 121 AQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSANSQGKVAAAAV 178
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.2 bits (179), Expect = 4e-16
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607
PG D+ +S+ + P K ++GA + LE +G +VT++ S L
Sbjct: 1 PG---DKEYCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR 56
Query: 608 TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKT-EIITSIFDK 666
D+++A K + + G+ I I+ + + + + E I F+
Sbjct: 57 GFDQDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNT 116
Query: 667 LLIAIG 672
+L+A+G
Sbjct: 117 VLLAVG 122
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 71.8 bits (175), Expect = 3e-15
Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 17/152 (11%)
Query: 539 ATGSKARSF---PGVKFDENLILSNKGALEMINVPKKLCII---GAGVIGLEIGSIWRRL 592
G+ + PG L+ + ++ K +I + +
Sbjct: 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATA 63
Query: 593 GSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKS 652
G EVTI+ L++ + + + I+ + + + + S
Sbjct: 64 GHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGS 123
Query: 653 TNVKTEIITSI-----------FDKLLIAIGR 673
S FD L++ GR
Sbjct: 124 KRTYRGPGVSPRDANTSHRWIEFDSLVLVTGR 155
|
| >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Neisseria meningitidis [TaxId: 487]
Score = 67.9 bits (166), Expect = 9e-15
Identities = 17/79 (21%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKII 61
AL+E+K+P + ++ G+ + ++ LI +ETDK +++PA G++ ++
Sbjct: 1 ALVELKVPDIGG-HENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVK 59
Query: 62 ITDGSIVTSNQVIALIDTD 80
+ G ++ +I +++ +
Sbjct: 60 VKVGDKISEGGLIVVVEAE 78
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 70.7 bits (171), Expect = 2e-14
Identities = 29/191 (15%), Positives = 60/191 (31%), Gaps = 25/191 (13%)
Query: 572 KLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFL-------------NTVDEEIAKK 616
K+ ++G+ G E L +E+ E +
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61
Query: 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
+ +G+N+ NT+I I+ + V + I +
Sbjct: 62 TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGP----------MLAHKAEE 726
N K L+++ N I ++ T+ P+++A+GD LA A +
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181
Query: 727 EGIMVAEHISG 737
+G +++
Sbjct: 182 QGRFAVKNLEE 192
|
| >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Escherichia coli [TaxId: 562]
Score = 64.5 bits (157), Expect = 2e-13
Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62
+ EV +P + E + K G+ V ++LI +E DK +E+PAP G++ ++ +
Sbjct: 2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKV 59
Query: 63 TDGSIVTSNQVIALIDTD 80
G V + +I + + +
Sbjct: 60 NVGDKVKTGSLIMIFEVE 77
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.9 bits (157), Expect = 3e-13
Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607
PG +L +++ G ++ +P + I+GAG I +E+ I LGS+ +++ L
Sbjct: 4 PGA----SLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR 59
Query: 608 TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDK 666
+ D I+ L G+ ++ +++ ++K + ++ + D
Sbjct: 60 SFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDC 119
Query: 667 LLIAIG 672
LL AIG
Sbjct: 120 LLWAIG 125
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 63.3 bits (153), Expect = 9e-13
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607
P KF IL + GAL + VPK L +IG G IG+E+G+ + G++VTILE + L+
Sbjct: 1 PNFKFSNR-ILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS 59
Query: 608 TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKL 667
++++A L K+G+ ++ N + ++ V + Y +T+ I D +
Sbjct: 60 GFEKQMAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANG---ETKTID--ADYV 114
Query: 668 LI 669
L+
Sbjct: 115 LV 116
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.5 bits (163), Expect = 1e-12
Identities = 41/306 (13%), Positives = 80/306 (26%), Gaps = 28/306 (9%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT---------- 436
++ ++DVIV+G G + S L+ G K I ++ GG
Sbjct: 2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHI------DKQDHYGGEAASVTLSQLYEK 55
Query: 437 -NVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFL 495
I + + + N+ + + K SG
Sbjct: 56 FKQNPISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVF 115
Query: 496 FKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDEN 555
+ K E + + K E I++ + + DE
Sbjct: 116 KQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEV 175
Query: 556 LILSNKGALEMINVPKKLCIIGAGVIGLEIG-----SIWRRLGSEVTILEMSSNFLNTVD 610
G + + + + I S + +
Sbjct: 176 YYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGL 235
Query: 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIA 670
E+ + L G +L+T I ++ K+ K VKT++ T ++
Sbjct: 236 GELPQGFARLSAIYGGTYMLDTPIDEVLYKKDT------GKFEGVKTKLGTFKAPLVIAD 289
Query: 671 IGRIPN 676
P
Sbjct: 290 PTYFPE 295
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 60.9 bits (147), Expect = 7e-12
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606
FP VK EN I S+ + KK+ I+G+G I +E+ ++ +RLG + I + L
Sbjct: 1 FPPVKGIENTISSD-EFFNI-KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL 58
Query: 607 NTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFD 665
DE + + + K +NI+ + +IK + L I+ S+ FD
Sbjct: 59 RKFDESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRI-------YEHFD 111
Query: 666 KLLIAI 671
++ +
Sbjct: 112 HVIYCV 117
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Score = 63.9 bits (154), Expect = 1e-11
Identities = 35/174 (20%), Positives = 63/174 (36%), Gaps = 19/174 (10%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL--GGTCTNVGCIPSKALL- 447
+DVIVIG GP G +A+I A+ G +D+ A+ GG C +P ++
Sbjct: 3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVK 62
Query: 448 ------------QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFL 495
+ + E++ F G+ + + K + +L
Sbjct: 63 HIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVD---ALLTR 119
Query: 496 FKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549
K +K + N +I +T E + +++IA G K+ G
Sbjct: 120 LKDLGVKIRTNTPV-ETIEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTG 172
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Score = 58.7 bits (142), Expect = 1e-11
Identities = 13/75 (17%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 6 VKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDG 65
+++P + + ++ K G+L+ + L+ +E+ K +E+P+P+ G++ + + G
Sbjct: 4 IRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLG 60
Query: 66 SIVTSNQVIALIDTD 80
+ I ++
Sbjct: 61 DKLKEGDAIIELEPA 75
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 58.6 bits (141), Expect = 4e-11
Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607
PGV+ + + G + +P+++ ++GAG IG+E+G + LG++ + EM L
Sbjct: 3 PGVE----YGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP 58
Query: 608 TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDK 666
+ D I++ ++N +G + N + N + + + + + D
Sbjct: 59 SFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSET--------VDC 110
Query: 667 LLIAIG 672
L+ AIG
Sbjct: 111 LIWAIG 116
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 58.3 bits (140), Expect = 5e-11
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 10/121 (8%)
Query: 556 LILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWR---RLGSEVTILEMSSNFLNTVDEE 612
L +++ A + PK+ +G G I +E I+ G +V + L D E
Sbjct: 4 LCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSE 63
Query: 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG 672
+ K+ L G+N+ + + N + +D +++AIG
Sbjct: 64 LRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEAD-------YDVVMLAIG 116
Query: 673 R 673
R
Sbjct: 117 R 117
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 57.9 bits (139), Expect = 9e-11
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 557 ILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKK 616
++S+ AL +P+ L ++G G IGLE+G +R+LG++V+++E L T D E+
Sbjct: 8 VISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAP 67
Query: 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG 672
L K G+ + L + + N + + ++ D++L+A+G
Sbjct: 68 VAESLKKLGIALHLGHSVEGYE-NGCLLANDGKGGQLRLE-------ADRVLVAVG 115
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 59.4 bits (142), Expect = 1e-10
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 6/169 (3%)
Query: 569 VPKKLCIIGAGVIGLEIGSIWRRLG-SEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627
K+ ++GAG + S RLG S++TI E EI +
Sbjct: 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEI 62
Query: 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
++ I K + + + I I + + + +
Sbjct: 63 ELMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFI----GIGLPEVLRDPKVKEALSPI 118
Query: 688 KVNENNFIIVND-NCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHI 735
K N + V+ +T+ P ++A GD+V ++ +G + +I
Sbjct: 119 KFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQASWYI 167
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 56.3 bits (135), Expect = 3e-10
Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIW---RRLGSEVTILEMSSN 604
PG++ +S+ A + P+++ +G G I +E I+ + +VT+
Sbjct: 2 PGIE----HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57
Query: 605 FLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI- 663
L D + ++ L G+ I+ +++N + V E +
Sbjct: 58 ILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADGSKS--------VTFESGKKMD 109
Query: 664 FDKLLIAI 671
FD +++AI
Sbjct: 110 FDLVMMAI 117
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (133), Expect = 7e-10
Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 13/113 (11%)
Query: 565 EMINVPKKLCIIGAGVIGLE----IGSIWRRLGSEVTILEMSSNFL-NTVDEEIAKKAFH 619
++ K + IIG G +G E +G R LG+EV L + + E ++
Sbjct: 32 KISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTME 91
Query: 620 LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG 672
+ ++G+ ++ N + + ++ +LI + + D ++ A+G
Sbjct: 92 KVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRK------VE--TDHIVAAVG 136
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 55.0 bits (131), Expect = 8e-10
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 3/103 (2%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629
+ ++G +E G + G +L + D E + +QG+ II
Sbjct: 22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEII 81
Query: 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG 672
+ + I+ + + + N + I D + + +G
Sbjct: 82 SGSNVTRIEEDANGRVQAVVAMTPNGEMRI---ETDFVFLGLG 121
|
| >d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex domain: E3-binding domain of dihydrolipoamide succinyltransferase species: Escherichia coli [TaxId: 562]
Score = 50.3 bits (121), Expect = 5e-09
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 103 VMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLS 141
+ P+ +++L+++NL+ S I GTG GR+ +EDV K L+
Sbjct: 1 LSPAIRRLLAEHNLDASAIK-GTGVGGRLTREDVEKHLA 38
|
| >d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 49.9 bits (120), Expect = 7e-09
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 102 IVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLS 141
I MPS +K + ++I + GTGK+GR++KED+ L+
Sbjct: 3 IAMPSVRKYAREKGVDIRLVQ-GTGKNGRVLKEDIDAFLA 41
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 56.3 bits (134), Expect = 8e-09
Identities = 44/349 (12%), Positives = 90/349 (25%), Gaps = 21/349 (6%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
V+++GAG G A+ LA G + + E + GG +
Sbjct: 32 HVVIVGAGMAGLSAAYVLAGAGHQVTVL------EASERPGGRVRTYRNEEAGWYANLGP 85
Query: 452 SFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFT 511
K+ I ++ LN KN + KK+ +
Sbjct: 86 MRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSE 145
Query: 512 GKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINVPK 571
+ + K E + + LS P
Sbjct: 146 AGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLS----------PG 195
Query: 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631
+ +IG + + + + + + + + K + + N
Sbjct: 196 AVDMIGDLLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKLPTAMYRDIQDKVHFN 255
Query: 632 TKIHDIKINKENVLINYSNKSTNVKTE----IITSIFDKLLIAIGRIPNTNNLNIDKIGL 687
++ I+ N + V + Y S + +I + + I P +
Sbjct: 256 AQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRS 315
Query: 688 KVNENNFIIVNDNCETNIPNIYAIGDVVRGPM-LAHKAEEEGIMVAEHI 735
F +D + IY G+ + G+ A +
Sbjct: 316 VFTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDV 364
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 44.0 bits (102), Expect = 5e-05
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 552 FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603
++E L ++ G L+ + PK + I+GAG+ GL + G +VT+LE S
Sbjct: 13 YEEFLEIARNG-LKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 51.2 bits (122), Expect = 2e-08
Identities = 33/134 (24%), Positives = 53/134 (39%), Gaps = 18/134 (13%)
Query: 543 KAR--SFPGVK--FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTI 598
+AR G + I E I + IIG G IGLE+ G V +
Sbjct: 1 RAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKL 60
Query: 599 LEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTE 658
+ + FL +DEE++ +L + G+ LN+++ ++ N+E VL N
Sbjct: 61 IHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSEL--LEANEEGVLTNSGFIE------ 111
Query: 659 IITSIFDKLLIAIG 672
+ AIG
Sbjct: 112 -----GKVKICAIG 120
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Score = 53.5 bits (128), Expect = 2e-08
Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 6/124 (4%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV-GCIPSKALLQT 449
+ V+++GAG G + LAQ G + + + D A+ P +LL+
Sbjct: 3 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD-----AVMMPFLPPKPPFPPGSLLER 57
Query: 450 SHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAI 509
++ ++ + F L + + + + ++ + +
Sbjct: 58 AYDPKDERVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVV 117
Query: 510 FTGK 513
Sbjct: 118 LAVG 121
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 50.9 bits (121), Expect = 3e-08
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)
Query: 565 EMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-VDEEIAKKAFHLLNK 623
+ +L I+G GVIGLE+ + R G V+++E ++ +A
Sbjct: 25 AGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAA 84
Query: 624 QGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIAIG 672
QG+++ + V + T I D +++ IG
Sbjct: 85 QGVDLRFERSVTGSVDGV-------------VLLDDGTRIAADMVVVGIG 121
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Score = 49.5 bits (118), Expect = 3e-08
Identities = 16/59 (27%), Positives = 30/59 (50%)
Query: 19 TLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77
T+ KEG+ V + ++ +E K+ E+ AP DG + K+++ + V Q + I
Sbjct: 18 TVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (126), Expect = 5e-08
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQ--LGFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445
DVI++GAG G A+ +A+ K I E + A GG G + S
Sbjct: 48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCII------ESSVAPGGGSWLGGQLFSAM 101
Query: 446 LLQ 448
+++
Sbjct: 102 VMR 104
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (104), Expect = 3e-05
Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 10/102 (9%)
Query: 641 KENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDN 700
++ + ST + K ++ I + + K + + ++++
Sbjct: 207 RDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGM---KGLDMNHAEHDVVIHSG 263
Query: 701 CETNIPNIYAIGDVVRGPMLAH-------KAEEEGIMVAEHI 735
+ N+Y G V + G+ AE I
Sbjct: 264 AYAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQI 305
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 50.6 bits (120), Expect = 1e-07
Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 13/175 (7%)
Query: 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-----VDEEIAKKAFHLLNKQG 625
KL I+G+G G R + ++ V+
Sbjct: 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLM 65
Query: 626 LNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDK 684
+ + + +I +++ ++ N+ + + D L+IA G ++ N
Sbjct: 66 ERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAI 125
Query: 685 IGLKVN-ENNFIIVNDNC-----ETNIPNIYAIGDVVRGP-MLAHKAEEEGIMVA 732
++ EN +I V +T+IP ++A GDV+ A + G M A
Sbjct: 126 FEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAA 180
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 46.3 bits (109), Expect = 4e-06
Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 18/166 (10%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
K+ ++++G+GP GY A++ A+ + I + G T + +
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKG-------GQLTTTTEVENWPGDP 56
Query: 449 TSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHA 508
+ + E + + + N + +N L N
Sbjct: 57 NDLTGPLLMERMHE-----HATKFETEIIFDHINKVDLQN--RPFRLNGDNGEYTCDALI 109
Query: 509 IFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF----PGV 550
I TG I + + + YI + +G + PGV
Sbjct: 110 IATGASARYHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGV 155
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 50.7 bits (120), Expect = 1e-07
Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 12/165 (7%)
Query: 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT--NVGCIPSKA 445
N + ++G+GP + A+I A+ K + W N+ T T
Sbjct: 3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPE 62
Query: 446 LLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
+ + + +G T+ + + +
Sbjct: 63 GILGVELTDKFRKQSERFGTTIFTETVTKVDF-----SSKPFKLFTDSKAILADAVILAI 117
Query: 506 GHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGV 550
G + F + + E + Y++ G+ S PGV
Sbjct: 118 GAVAKGHEPATKFLDGGV-----ELDSDGYVVTKPGTTQTSVPGV 157
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 49.9 bits (118), Expect = 2e-07
Identities = 29/185 (15%), Positives = 60/185 (32%), Gaps = 15/185 (8%)
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILE--------MSSNFLNTVDEEIAKKA 617
+ +LCI+G+G R + + E T D E
Sbjct: 1 LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGF 60
Query: 618 FHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVK---TEIITSIFDKLLIAIGRI 674
+ L + + + S+ T+ + D +++AIG +
Sbjct: 61 PEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAV 120
Query: 675 PNTNNLNID--KIGLKVNENNFIIVN-DNCETNIPNIYAIGDVVRGP-MLAHKAEEEGIM 730
+ G++++ + +++ +T++P ++A GDV A A G M
Sbjct: 121 AKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCM 180
Query: 731 VAEHI 735
A
Sbjct: 181 AALDA 185
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 49.7 bits (117), Expect = 2e-07
Identities = 27/172 (15%), Positives = 54/172 (31%), Gaps = 10/172 (5%)
Query: 573 LCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNT 632
+ I+G+G G R G ++ +I + +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQ-KLAGAL 62
Query: 633 KIHDIKINKENVLINYSNKSTNVK--------TEIITSIFDKLLIAIGRIPNTNNLNIDK 684
K+H + + + + ++K ++ I + N N +
Sbjct: 63 KVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLE 122
Query: 685 IGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPM-LAHKAEEEGIMVAEHI 735
++ N II++ CETN+ ++A GD P A EG +
Sbjct: 123 GAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSA 174
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
+DV+++G+GP G A+I A+ G +T + E
Sbjct: 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE 32
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 51.2 bits (121), Expect = 2e-07
Identities = 22/140 (15%), Positives = 42/140 (30%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIP 442
++ + DV+V+G+G G+ A+I G K I++ N L N
Sbjct: 9 LASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTD 68
Query: 443 SKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIK 502
+ + + S E + + G N + L K+++ G
Sbjct: 69 QQKAKKITDSPELMFEDTMKGGQNINDPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGG 128
Query: 503 FFHGHAIFTGKIQNNFHEIQ 522
A +
Sbjct: 129 ASVNRAHRPTGGAGVGAHVV 148
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 50.9 bits (120), Expect = 3e-07
Identities = 39/363 (10%), Positives = 89/363 (24%), Gaps = 38/363 (10%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
+V V+G G G + L G + E + LGG + + Q +
Sbjct: 2 NVAVVGGGISGLAVAHHLRSRGTDAVLL------ESSARLGGAVGTHA-LAGYLVEQGPN 54
Query: 452 SF----ENVKNSFFEYGINTQNVTLNL--QKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
SF + + + + ++ ++ + + +
Sbjct: 55 SFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGA 114
Query: 506 GHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALE 565
+ E + G+ + LS
Sbjct: 115 RLRVAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFP 174
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQG 625
M+ V + + + R+ S L+T D + L G
Sbjct: 175 ML-VKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLIDALAASLG 233
Query: 626 LNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL----- 680
+ ++ + + + ++++A T L
Sbjct: 234 DAAHVGARVEGLAREDGGWRLIIEEHGRRAELS-----VAQVVLAAP-AHATAKLLRPLD 287
Query: 681 --------NIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVA 732
I +G + D +P ++ IG+ +G L +A
Sbjct: 288 DALAALVAGIYNLGHL----ERVAAIDAALQRLPGLHLIGNAYKGVGLND-CIRNAAQLA 342
Query: 733 EHI 735
+ +
Sbjct: 343 DAL 345
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Score = 49.2 bits (116), Expect = 1e-06
Identities = 16/81 (19%), Positives = 31/81 (38%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQ 448
+ DV++IG+G G A++ G K +++ N L N +A L
Sbjct: 22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLG 81
Query: 449 TSHSFENVKNSFFEYGINTQN 469
+ + + + G N +
Sbjct: 82 IEDKKQIMIDDTMKGGRNIND 102
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 59/428 (13%), Positives = 114/428 (26%), Gaps = 68/428 (15%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSH 451
DV+V+G G G A+ L G + E +GG +
Sbjct: 1 DVVVVGGGISGMAAAKLLHDSGLNVVVL------EARDRVGGRT---------------Y 39
Query: 452 SFENVKNSFFEYGINTQNVTLN-LQKMLERKN-NIIKKNNSGILFLFKKNKIKFFHGHAI 509
+ N K + + G + T N + ++ + K N L K K F G
Sbjct: 40 TLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFRGPFP 99
Query: 510 FTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFDENLILSNKGALEMINV 569
+ + + +E ++ K L+ +
Sbjct: 100 PVWNPITYLDHNNFWRTMDD-------MGREIPSDAPWKAPLAEEWDNMTMKELLDKLCW 152
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHL--------- 620
+ + + L + + + + + + T
Sbjct: 153 TESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQV 212
Query: 621 ----LNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676
++ G + L + I +ENVL+ N +I++I L + I P
Sbjct: 213 SERIMDLLGDRVKLERPVIYIDQTRENVLVETLNHEMYEAKYVISAIPPTLGMKIHFNPP 272
Query: 677 TNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGD--VVRGPMLAHKAEEEGIMVAEH 734
+ I + IY G A E G A
Sbjct: 273 LPMMRNQMITRVFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAARE 332
Query: 735 ISGQKHSINFNALPFVIYTFPEIASVGK--TEQYLKKHNISYNVGIFPFLANSRARILGE 792
I + ++GK ++ + S +V P R L
Sbjct: 333 I---------------------LHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPS 371
Query: 793 TSGMVKIL 800
G+++++
Sbjct: 372 VPGLLRLI 379
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPS 443
M ++++ +VIG G G + LA+ TA + T G + +
Sbjct: 1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFE-----SGTMGGRTTSAAAGMLGA 52
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.8 bits (112), Expect = 3e-06
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
D+++ GAG GG ++ L Q G + E
Sbjct: 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLE 32
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Score = 47.5 bits (112), Expect = 4e-06
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC-----TNVGCIPSKA 445
DV+V+GAG G A RL +LG I E +GG C
Sbjct: 8 VDVLVVGAGFSGLYALYRLRELGRSVHVI------ETAGDVGGVWYWNRYPGARCDIESI 61
Query: 446 LLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNN 489
S S E ++ + +Q L + K ++
Sbjct: 62 EYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGIT 105
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Score = 47.3 bits (111), Expect = 4e-06
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 376 REAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
++ + ++ ++ V+V+GAG G+ AS+ + G +D
Sbjct: 5 QDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVD 49
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 4e-06
Identities = 29/212 (13%), Positives = 54/212 (25%), Gaps = 58/212 (27%)
Query: 575 IIGAGVIGLEIGSIWRRLGSEVTILEMS-------------------------------- 602
+IG G R +L +S
Sbjct: 9 LIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQ 68
Query: 603 ------SNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVK 656
S + ++ + + G+ ++ K+ + + V +N ++ T K
Sbjct: 69 WNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEK 128
Query: 657 TEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDV-- 714
LIA G L ++ VN + NI+ GD
Sbjct: 129 C----------LIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR-SNIWVAGDAAC 177
Query: 715 -------VRGPMLAHKAEEEGIMVAEHISGQK 739
R A G + E+++G
Sbjct: 178 FYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA 209
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Score = 47.3 bits (111), Expect = 6e-06
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M+ +DV+++G+GP G + L G+K A D
Sbjct: 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFD 34
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 387 MN-KNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M + D +VIG G G A++ Q G T +
Sbjct: 1 MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLS 35
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Score = 41.5 bits (97), Expect = 2e-05
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 23 WHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78
+ G+ V + L +E K++ ++ A + G + I++ G V ++ + +I+
Sbjct: 25 AFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.5 bits (104), Expect = 3e-05
Identities = 18/172 (10%), Positives = 43/172 (25%), Gaps = 13/172 (7%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCI-------PSK 444
V +IGAGP G + L + G ++ + + G + +
Sbjct: 4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDR 63
Query: 445 ALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLF---KKNKI 501
+ + E V+ + + + L + + + L
Sbjct: 64 RMARDGLVHEGVE---IAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATT 120
Query: 502 KFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVKFD 553
+ + + + + YI G S + +
Sbjct: 121 VYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHGISRQSIPAE 172
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Score = 43.7 bits (102), Expect = 6e-05
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 383 MSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACID 420
M + + FD +VIGAG G A+++++Q G A +
Sbjct: 1 MKLPV-REFDAVVIGAGGAGMRAALQISQSGQTCALLS 37
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 27/246 (10%), Positives = 52/246 (21%), Gaps = 58/246 (23%)
Query: 375 GREAVLSLMSFIMNKN---FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL 431
G E + V+++GAGP G A+ L + G+ D +
Sbjct: 31 GEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI------ 84
Query: 432 GGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSG 491
GG V +P E+ + + K+L++
Sbjct: 85 GGHLNQVAALPGL----------------GEWSYHRDYRETQITKLLKKNKESQLALGQK 128
Query: 492 ILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPGVK 551
+ + IATG+ +
Sbjct: 129 PMTADDVLQYGADKVI------------------------------IATGASECTLWNEL 158
Query: 552 FDENLILSNKGALEMINVPK---KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT 608
+ + + I A G + ++ I
Sbjct: 159 KARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAWG 218
Query: 609 VDEEIA 614
Sbjct: 219 TPHMPG 224
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 41.1 bits (95), Expect = 8e-05
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 564 LEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS-NFLNTVDEEIAKKAFHLLN 622
+ +L +IG G IGLE+ + + VT+L+ ++ ++ HL
Sbjct: 29 RRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHR 88
Query: 623 KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIAIG 672
+ G++I T++ +++ + K T V E T + D ++ IG
Sbjct: 89 EAGVDIRTGTQVCGFEMSTDQQ------KVTAVLCEDGTRLPADLVIAGIG 133
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 42.8 bits (99), Expect = 9e-05
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACID 420
+ V+G G A++ L G +
Sbjct: 6 RIAVVGGSISGLTAALMLRDAGVDVDVYE 34
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 38.6 bits (88), Expect = 0.002
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIA--KKAFHLLNKQGLN 627
++ ++G + GL + R G +V + E S L+ I + H L +QG+
Sbjct: 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVE 63
Query: 628 I 628
+
Sbjct: 64 L 64
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Score = 43.3 bits (101), Expect = 9e-05
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 387 MNKNFDVIVIGAGPGGYVASIRLAQL------GFKTACID 420
+ DV+++GAGP G A+ RL QL + ++
Sbjct: 29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVE 68
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Score = 43.0 bits (100), Expect = 1e-04
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACID 420
+VIG+G GG VA++RL Q G T ++
Sbjct: 8 VPALVIGSGYGGAVAALRLTQAGIPTQIVE 37
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (99), Expect = 1e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 389 KNFDVIVIGAGPGGYVASIRLAQLGFK 415
K VI+IG+G G A+ +L G
Sbjct: 4 KTGKVIIIGSGVSGLAAARQLQSFGMD 30
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPS 443
FDVIV+GAG G A +LA+ G KT +D + G + I
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDA---FDPPHTNGSHHGDTRIIRH 53
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Score = 42.6 bits (99), Expect = 1e-04
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 373 IDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
ID + ++LS S + K +D I+ G G G + +L + + E
Sbjct: 7 IDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIE 55
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 41.7 bits (97), Expect = 2e-04
Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 15/155 (9%)
Query: 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV---GCIPSKALL 447
+D I++G+G G V + L +L K I+ K N +GG G K
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIE--KRNH----IGGNAYTEDCEGIQIHKYGA 55
Query: 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGH 507
H+ + + + T + + + K + N + ++ +
Sbjct: 56 HIFHTNDKYIWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNI 115
Query: 508 -----AIFTGKIQNNFHEIQIINKTKETITAKYII 537
+ K+ N E Q I+ E + I
Sbjct: 116 INAQKKKYGDKVPENLEE-QAISLVGEDLYQALIK 149
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 41.6 bits (96), Expect = 2e-04
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 385 FIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
+M+ V+V+G+G G +++ LA+ G+ +
Sbjct: 1 LMMHSQKRVVVLGSGVIGLSSALILARKGYSVHILAR 37
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 40.8 bits (94), Expect = 4e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILE 600
M++ K++ ++G+GVIGL I R G V IL
Sbjct: 2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILA 36
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Score = 41.1 bits (95), Expect = 4e-04
Identities = 22/127 (17%), Positives = 41/127 (32%), Gaps = 8/127 (6%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445
+ + DV++IG+G G ++RLA + + K G T G I A
Sbjct: 3 LPEHSCDVLIIGSGAAGLSLALRLADQH-QVIVLS--KGPVTE---GSTFYAQGGIA--A 54
Query: 446 LLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFH 505
+ + S ++ G + ++ + + G+LF
Sbjct: 55 VFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGVLFDTHIQPNGEES 114
Query: 506 GHAIFTG 512
H G
Sbjct: 115 YHLTREG 121
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Score = 41.1 bits (95), Expect = 4e-04
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACID 420
+VIG G G V+++RL + G +T ++
Sbjct: 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLE 32
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 38.7 bits (89), Expect = 5e-04
Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-NTVDEEIAKKAFHLLNKQGLNI 628
+ +IG+G IG+E + + G +VT++++ L +D+E + + I
Sbjct: 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITI 89
Query: 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAI 671
+ + + + V T+ D +++A+
Sbjct: 90 ATGETVERYEGD---------GRVQKVVTDKNAYDADLVVVAV 123
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Score = 40.6 bits (94), Expect = 5e-04
Identities = 25/162 (15%), Positives = 53/162 (32%), Gaps = 19/162 (11%)
Query: 375 GREAVLSLMS---FIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFAL 431
G EA SL++ + + D I+ G G G + RL + + + E E +
Sbjct: 1 GIEA--SLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGP 58
Query: 432 GGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSG 491
+++ +++ ++ S ++ T + N Q L R N + +
Sbjct: 59 --------------IIEDLNAYGDIFGSSVDHAYETVELATNNQTALIRSGNGLGGSTLV 104
Query: 492 ILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITA 533
+ + G N+ + + E A
Sbjct: 105 NGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARA 146
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Score = 40.5 bits (93), Expect = 7e-04
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACID 420
DV+++GAGP G +A+ L++ + +
Sbjct: 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLK 37
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Score = 38.6 bits (88), Expect = 0.002
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPS 443
+++IGAG G + L G+ + + N G T G +
Sbjct: 3 RIVIIGAGIVGTNLADELVTRGWNNITVLD--QGPLNMPGGSTSHAPGLVFQ 52
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 0.003
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 386 IMNKNFDVIVIGAGPGGYVASIRLAQL--GFKTACID 420
+ D+ ++GAG G A+I AQ K A I
Sbjct: 1 MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALIS 37
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 38.4 bits (88), Expect = 0.003
Identities = 18/156 (11%), Positives = 35/156 (22%), Gaps = 15/156 (9%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQL----GFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445
D+++IG G G A+ A G K +++ G I
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAVAQGLSAINTYIDLTG 80
Query: 446 LLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILF----------- 494
+ ++ E+ + L + G+
Sbjct: 81 RSERQNTLEDYVRYVTLDMMGLAREDLVADYARHVDGTVHLFEKWGLPIWKTPDGKYVRE 140
Query: 495 LFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKET 530
+ I I + E I +
Sbjct: 141 GQWQIMIHGESYKPIIAEAAKMAVGEENIYERVFIF 176
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Score = 38.5 bits (88), Expect = 0.003
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDE 421
+D I++GAGPGG +A+ RL++ G K ++
Sbjct: 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLER 33
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 866 | |||
| d1scza_ | 233 | Dihydrolipoamide succinyltransferase {Escherichia | 100.0 | |
| d1dpba_ | 243 | Dihydrolipoamide acetyltransferase {Azotobacter vi | 100.0 | |
| d1b5sa_ | 242 | Dihydrolipoamide acetyltransferase {Bacillus stear | 100.0 | |
| d1q23a_ | 214 | Chloramphenicol acetyltransferase, CAT {Escherichi | 99.97 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.97 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.97 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.97 | |
| d3claa_ | 213 | Chloramphenicol acetyltransferase, CAT {Escherichi | 99.96 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.96 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.96 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.95 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.95 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.95 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.94 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.94 | |
| d1v59a3 | 123 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.94 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.94 | |
| d1dxla3 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.94 | |
| d3lada3 | 124 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.94 | |
| d1lvla3 | 123 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.94 | |
| d1ojta3 | 128 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.93 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.93 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.93 | |
| d1ebda3 | 115 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.93 | |
| d1xdia2 | 118 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.93 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.91 | |
| d3grsa3 | 115 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.9 | |
| d1gesa3 | 115 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.89 | |
| d1y8ob1 | 102 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.87 | |
| d1feca3 | 128 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.87 | |
| d1ghja_ | 79 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 99.87 | |
| d1k8ma_ | 87 | Lipoyl domain of the mitochondrial branched-chain | 99.86 | |
| d1onfa3 | 119 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.86 | |
| d1laba_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.85 | |
| d1mo9a3 | 140 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.84 | |
| d1pmra_ | 80 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 99.83 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.81 | |
| d1gjxa_ | 81 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.81 | |
| d1qjoa_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.8 | |
| d1h6va3 | 133 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.8 | |
| d1nhpa3 | 126 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.78 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.78 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.77 | |
| d1iyua_ | 79 | Lipoyl domain of dihydrolipoamide acetyltransferas | 99.76 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.75 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.75 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.74 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.74 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.73 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.72 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.71 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.71 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.71 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.69 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.67 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.66 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.64 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.62 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.62 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.59 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.55 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.54 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.54 | |
| d1dcza_ | 77 | Biotin carboxyl carrier domain of transcarboxylase | 99.53 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.51 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.5 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.5 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.48 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.47 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.47 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.46 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.39 | |
| d1bdoa_ | 80 | Biotinyl domain of acetyl-CoA carboxylase {Escheri | 99.34 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.34 | |
| d1w85i_ | 42 | E3/E1 binding domain of dihydrolipoyl acetyltransf | 99.34 | |
| d2cyua1 | 39 | E3-binding domain of dihydrolipoamide succinyltran | 99.29 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.23 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.22 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 99.15 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.14 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 99.13 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.12 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 99.1 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 99.04 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 99.04 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.04 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.03 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.0 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.99 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.99 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.92 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.91 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.91 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.91 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.9 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.88 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.87 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.84 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.84 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.82 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 98.79 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.79 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.77 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.75 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.73 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 98.73 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.72 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.69 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.69 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.67 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.66 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.64 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.64 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.6 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.57 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.57 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.53 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.51 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.51 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.49 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.49 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.47 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.46 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.44 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.44 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.43 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.42 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.41 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.41 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.38 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.37 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.36 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.33 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.29 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.28 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.26 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.25 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.25 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.25 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.18 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.14 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 98.12 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.08 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.06 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 97.94 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.91 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 97.88 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 97.87 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.85 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.77 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.75 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 97.73 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.7 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 97.62 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 97.58 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 97.56 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 97.53 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.46 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.45 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.42 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 97.42 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.28 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.11 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.11 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.1 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.1 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.03 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.03 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 96.99 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 96.96 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 96.94 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 96.92 | |
| d1onla_ | 127 | Protein H of glycine cleavage system {Thermus ther | 96.82 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.81 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 96.75 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 96.75 | |
| d1hpca_ | 131 | Protein H of glycine cleavage system {Pea (Pisum s | 96.72 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 96.64 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.63 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.62 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 96.6 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 96.53 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 96.48 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 96.42 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 96.4 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.34 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.23 | |
| d1dcza_ | 77 | Biotin carboxyl carrier domain of transcarboxylase | 95.99 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 95.92 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.92 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.77 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 95.75 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 95.62 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.57 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 95.5 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.84 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 94.76 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.73 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 94.66 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.48 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.4 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.39 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.38 | |
| d1bdoa_ | 80 | Biotinyl domain of acetyl-CoA carboxylase {Escheri | 94.36 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 94.36 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.3 | |
| d1iyua_ | 79 | Lipoyl domain of dihydrolipoamide acetyltransferas | 93.82 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.81 | |
| d1k8ma_ | 87 | Lipoyl domain of the mitochondrial branched-chain | 93.74 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.7 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.61 | |
| d1vf7a_ | 237 | Multidrug resistance protein MexA domain {Pseudomo | 93.56 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 93.45 | |
| d1qjoa_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 93.04 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 93.04 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 92.71 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 92.48 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 92.48 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.32 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.26 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 92.24 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 92.18 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.18 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 92.09 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 91.95 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 91.92 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 91.91 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 91.71 | |
| d1vf7a_ | 237 | Multidrug resistance protein MexA domain {Pseudomo | 91.71 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 91.61 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 91.4 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 91.23 | |
| d1ghja_ | 79 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 90.96 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 90.89 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 90.7 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 90.68 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 90.53 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 90.36 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 90.31 | |
| d1y8ob1 | 102 | Lipoyl domain of dihydrolipoamide acetyltransferas | 90.15 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 89.71 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 89.54 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 89.46 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 89.13 | |
| d1gjxa_ | 81 | Lipoyl domain of dihydrolipoamide acetyltransferas | 88.86 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 88.67 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 88.41 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 88.04 | |
| d1laba_ | 80 | Lipoyl domain of dihydrolipoamide acetyltransferas | 87.88 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 87.72 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 87.61 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 87.29 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 87.07 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 86.99 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 86.23 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 85.9 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 85.54 | |
| d1pmra_ | 80 | Lipoyl domain of the 2-oxoglutarate dehydrogenase | 85.14 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 84.81 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 84.72 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 84.65 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 84.47 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 84.36 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 84.35 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 84.25 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 84.24 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 83.67 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 83.62 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 83.37 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 83.34 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 82.7 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 82.61 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 82.48 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 82.09 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 81.78 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 81.54 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 80.91 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 80.86 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 80.85 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 80.71 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 80.38 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 80.24 |
| >d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: CAT-like domain: Dihydrolipoamide succinyltransferase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9e-57 Score=452.05 Aligned_cols=216 Identities=60% Similarity=1.016 Sum_probs=210.9
Q ss_pred ccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccce
Q psy9583 169 LEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINA 248 (866)
Q Consensus 169 ~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~ 248 (866)
.++++|++++||+||++|++||+++||+|++.++|+|+++++|+++++.++++.|.++|+++||+||+++||++||++|+
T Consensus 3 ~ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na 82 (233)
T d1scza_ 3 SEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNA 82 (233)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTC
T ss_pred CCcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhhe
Confidence 46789999999999999999999999999999999999999999999888888899999999999999999999999999
Q ss_pred EEeCCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCcccc
Q psy9583 249 SVDGNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSMLS 328 (866)
Q Consensus 249 ~~~~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~~~ 328 (866)
+|+++++++++++|||+||++++||++||||+++++|+.||+++++++.+++|+|+|+++|++||||||||+|++|+++|
T Consensus 83 ~~~~~~i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~~ 162 (233)
T d1scza_ 83 SIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS 162 (233)
T ss_dssp EEETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCC
T ss_pred EEcCCeEEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 329 TPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 329 ~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
+|||||||+||||+|++.++|++.+|++++|++|+++++||||++||+++++|...
T Consensus 163 tpii~ppq~aIl~vG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~ 218 (233)
T d1scza_ 163 TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVT 218 (233)
T ss_dssp CCCCCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred eeecCCCCceEEecccceeeccccCCeEEEEEEeEEEEEhhcchhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988764
|
| >d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: CAT-like domain: Dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Probab=100.00 E-value=5.8e-54 Score=436.30 Aligned_cols=216 Identities=32% Similarity=0.461 Sum_probs=205.8
Q ss_pred CccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccc
Q psy9583 168 RLEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIIN 247 (866)
Q Consensus 168 ~~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n 247 (866)
+..+++|++++||+||++|++||+++||+|++.++|+|+|+++|+++++.. ++.|.|+|+++||+||++.||++||.+|
T Consensus 13 G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~-~~~~~k~t~~~~iikA~a~Al~~~P~~N 91 (243)
T d1dpba_ 13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVA-EKAGVKLTVLPLLLKACAYLLKELPDFN 91 (243)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHH-HHTTCCCCSHHHHHHHHHHHHHHSGGGG
T ss_pred CCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhh-hhcCccccHHHHHHHHHHHHHHHhhhhh
Confidence 345789999999999999999999999999999999999999999877543 4568999999999999999999999999
Q ss_pred eEEeCC--eeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCc
Q psy9583 248 ASVDGN--NIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGS 325 (866)
Q Consensus 248 ~~~~~~--~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~ 325 (866)
++|+++ .++.+.++|||+||++++||++||||||+++|+.+|++++++|.+++|+|+|+++|++||||||||+|++|+
T Consensus 92 s~~~~~~~~~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~ 171 (243)
T d1dpba_ 92 SSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGG 171 (243)
T ss_dssp EEECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCC
T ss_pred hccccccccceeecccceeeeeccCcceeeeeecchhhhhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCccc
Confidence 999754 788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 326 MLSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 326 ~~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
++|+|||||||+||||+|++.++|++.+|++++|++|+++++||||++||+++++|+..
T Consensus 172 ~~~tpiInppq~aIlgvG~i~~~pv~~~~~i~~r~~m~ltls~DHRvidGa~aa~FL~~ 230 (243)
T d1dpba_ 172 TAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKR 230 (243)
T ss_dssp SCCCCCCCTTSSEEEEECCCEEEEEECSSSEEEEEEEEEEEEEETTTSCHHHHHHHHHH
T ss_pred eeEEeeeccccceeeecccceeeEEEECCEEEEEEEEEEEEEeecccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988754
|
| >d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: CAT-like domain: Dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=2.6e-53 Score=433.01 Aligned_cols=215 Identities=40% Similarity=0.662 Sum_probs=206.0
Q ss_pred ccccccCchhHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccce
Q psy9583 169 LEECVPMSRLRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINA 248 (866)
Q Consensus 169 ~~~~~~~~~~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~ 248 (866)
.++++|+++|||+||++|++||+++||+|++.|+|+|+|+++|+++++.. ++.|.|+|+++|++||+++||++||.+|+
T Consensus 13 ~~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~-~~~g~klT~~~~likA~a~AL~~~P~~Na 91 (242)
T d1b5sa_ 13 PETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNT 91 (242)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHH-HHTTCCCCSHHHHHHHHHHHHHHCGGGSC
T ss_pred CceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhh-hhcccccchhhHHHHHHHHHHHHhhhhhe
Confidence 45678999999999999999999999999999999999999999998654 44599999999999999999999999999
Q ss_pred EEeC--CeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCceEEEEcCCCcCcc
Q psy9583 249 SVDG--NNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNKLLPEEMSGGTFTISNGGVFGSM 326 (866)
Q Consensus 249 ~~~~--~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~gt~tisn~g~~g~~ 326 (866)
+|++ +.+.+++++|||+||++++||++|||++++++|+.+|+++++++.+++|+|+|.++|++||||||||+|++|+.
T Consensus 92 ~~~~~~~~i~~~~~v~igiAv~~~~gL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~gkl~~~dl~ggtftisnlG~~G~~ 171 (242)
T d1b5sa_ 92 SIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQ 171 (242)
T ss_dssp CBCTTSSCBCCCSSCCEEECEECSSCEECCEETTGGGCCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSCEEEECTTTCCS
T ss_pred EEcCCCCEEEEeeeeEEEEEecCCCceEeeeecccccccHHHHHHHHHHHHHHHHcCCCChhhccCcceEEeecCCCCcc
Confidence 9987 56889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCceEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 327 LSTPIINPPQSAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 327 ~~~~ii~~p~~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
+|+|||||||+||||+|++.++|+++||++++|++|+++++||||++||+++++|+..
T Consensus 172 ~ftpii~~pq~ail~vG~i~~~pv~~dg~i~~r~~m~lslt~DHRviDGa~aa~Fl~~ 229 (242)
T d1b5sa_ 172 WFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNH 229 (242)
T ss_dssp CCCCCCCTTCCEEEEECCCEEEEEECSSSEEEEEEEEEEEEECTTTSCSHHHHHHHHH
T ss_pred ceecccccccceEEeccceEEEEEEECCeEEEEEEEEEEEEEEcchhChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988764
|
| >d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: CAT-like domain: Chloramphenicol acetyltransferase, CAT species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=1.2e-31 Score=268.01 Aligned_cols=192 Identities=10% Similarity=0.098 Sum_probs=167.0
Q ss_pred ccCch-hHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEe
Q psy9583 173 VPMSR-LRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVD 251 (866)
Q Consensus 173 ~~~~~-~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~ 251 (866)
+-++. -||..-... ++...||++++.++|+|+|++++++. ++|++++++||+++||+++|+||++|+
T Consensus 7 ID~~~W~R~~~f~~f--~~~~~P~f~it~~vDvT~l~~~~K~~----------~~sf~~~~~~av~~Al~~~P~~n~~~~ 74 (214)
T d1q23a_ 7 VDISQWHRKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKKN----------KHKFYPAFIHILARLMNAHPEFRMAMK 74 (214)
T ss_dssp CCGGGCTTHHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHTTCGGGSEEEE
T ss_pred eccccCcCHHHHHHH--hCCCCCeEEEEEEEcHHHHHHHHHHc----------CCCcHHHHHHHHHHHHHhChHhheEEc
Confidence 44444 356555554 34568999999999999999888753 689999999999999999999999999
Q ss_pred CCeeEEccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCC-CCccccCCceEEEEcCCCcCcccccc
Q psy9583 252 GNNIIYHKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNK-LLPEEMSGGTFTISNGGVFGSMLSTP 330 (866)
Q Consensus 252 ~~~~~~~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~-l~~~~~~~gt~tisn~g~~g~~~~~~ 330 (866)
++++++++.+|+|+||++++||++|+|++++++++.+|+++..+++.++++++ +.+++++|+||||||+||+|.+.++.
T Consensus 75 ~~~i~~~~~i~i~iav~~~~gl~v~~i~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~~~~tftiSnlg~~~ft~~~~ 154 (214)
T d1q23a_ 75 DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDL 154 (214)
T ss_dssp TTEEEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSEEEE
T ss_pred CCceeEcCccCeEEEEEcCCCeEEeEEecCchhhHHHHHHHHHHHHHHHHhCCCCCCccccCCEEEEEcCCCccccCccC
Confidence 99999999999999999999999999999999999999999999999998876 89999999999999999999887776
Q ss_pred ccCCCc---eEEEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 331 IINPPQ---SAILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 331 ii~~p~---~~il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
.++++. ++++++|++.+ ++| |.+|++++++|||++||.+++++...
T Consensus 155 ~~~~~~~~~vpii~~Gk~~~----~~~----r~~mplsls~dHrvvDG~~~a~Fl~~ 203 (214)
T d1q23a_ 155 NVANMDNFFAPVFTMGKYYT----QGD----KVLMPLAIQVHHAVCDGFHVGRMLNE 203 (214)
T ss_dssp EESCCTTCCSCEEEECCCEE----ETT----EEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred CCCCCccceeeEEEecceEE----ECC----EEEEEEEEEecccccchHHHHHHHHH
Confidence 665553 67999997653 354 56899999999999999999988764
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.97 E-value=1.3e-30 Score=266.08 Aligned_cols=219 Identities=45% Similarity=0.786 Sum_probs=189.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+||||||||++||.++++.|.+|+|||+. .+||+|.+.+|+|++.+............ ...+......
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~-------~~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 74 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-------NLGGVCLNVGCIPSKALISASHRYEQAKH-SEEMGIKAEN 74 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------CTTHHHHHTSHHHHHHHHHHHHHHHHHHT-CGGGTEECCS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecC-------CCCcceeccccccccccccccchhhhhhh-hhhhcccchh
Confidence 499999999999999999999999999999995 78999999999999998887776655544 4555666666
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcC-CceEEEecEEEEecCCCCcCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINK-TKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~-~g~~i~~d~lViATGs~p~~~p 548 (866)
..+++..+..+...+++.+...+..+++..+|+++.++..+.+. ....+... +...+..+.+|||+|+.|..
T Consensus 75 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a~f~~~-----~~~~v~~~~~~~~~~~~~iiIa~g~~p~~-- 147 (223)
T d1ebda1 75 VTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDA-----NTVRVVNGDSAQTYTFKNAIIATGSRPIE-- 147 (223)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEET-----TEEEEEETTEEEEEECSEEEECCCEEECC--
T ss_pred heeeHHHHhhHHHHHHHHHHhhHHHhhhccceeeeccEEEEccC-----cccceeccccceEEecccEEEEcCCCccc--
Confidence 77889999999999999998899999999999999999988765 55555433 34789999999999977641
Q ss_pred CCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEE
Q psy9583 549 GVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 628 (866)
T Consensus 148 -------------------------------------------------------------------------------- 147 (223)
T d1ebda1 148 -------------------------------------------------------------------------------- 147 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCE
Q psy9583 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNI 708 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~V 708 (866)
++|++||++.|.++++|++++++|+|.||++||||+|+|
T Consensus 148 -----------------------------------------~~G~~p~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gv 186 (223)
T d1ebda1 148 -----------------------------------------LVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNI 186 (223)
T ss_dssp -----------------------------------------BSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred -----------------------------------------cccceecCCCCChHhcCceECCCCCEeECCCCCCCCCCE
Confidence 147789999988999999999999999999999999999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Q psy9583 709 YAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINF 744 (866)
Q Consensus 709 yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~ 744 (866)
||+|||++++.+++.|..||++||++|+|++.+++|
T Consensus 187 yA~GDv~~~~~~~~~A~~~g~~aa~~i~g~~~~~dy 222 (223)
T d1ebda1 187 FAIGDIVPGPALAHKASYEGKVAAEAIAGHPSAVDY 222 (223)
T ss_dssp EECGGGSSSCCCHHHHHHHHHHHHHHHTSCCCCCCC
T ss_pred EEEeccCCCcccHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 999999999999999999999999999998877665
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.97 E-value=2.9e-30 Score=263.13 Aligned_cols=216 Identities=48% Similarity=0.804 Sum_probs=187.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++|||+||||||||++||..+++.|.+|+|||+. ..+||.|.+.+|+|++.+...+.........+..+++...
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~------~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~ 75 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR------GALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVS 75 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECS------SSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEES
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEec------CCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecc
Confidence 4699999999999999999999999999999997 7899999999999999998888877776666777888777
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEc--CCceEEEecEEEEecCCCCcC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIIN--KTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~--~~g~~i~~d~lViATGs~p~~ 546 (866)
.....+.....+.......+...+..++++.+++++.+...+.+. ....... .....+.+|++|+|||+.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~VIiATGs~~-- 148 (221)
T d1dxla1 76 NVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSP-----SEISVDTIEGENTVVKGKHIIIATGSDV-- 148 (221)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEET-----TEEEECCSSSCCEEEECSEEEECCCEEE--
T ss_pred cceecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccc-----cccccccccccccccccceEEEeECCCc--
Confidence 777788888888877788888888889999999999998888765 4444432 3347899999999999753
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
T Consensus 149 -------------------------------------------------------------------------------- 148 (221)
T d1dxla1 149 -------------------------------------------------------------------------------- 148 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIP 706 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~ 706 (866)
.|+.|+++.|.++++|++++++|+|.||+++|||+|
T Consensus 149 --------------------------------------------~gr~p~~~~l~l~~~gv~~~~~G~i~vd~~~~T~v~ 184 (221)
T d1dxla1 149 --------------------------------------------KGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVS 184 (221)
T ss_dssp --------------------------------------------CCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCSST
T ss_pred --------------------------------------------cCccccCCCCChHhcCceEcCCCcEEeCCCcccCCC
Confidence 156788988888999999999999999999999999
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCC
Q psy9583 707 NIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS 741 (866)
Q Consensus 707 ~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~ 741 (866)
+|||+|||+++|.+++.|..+|++||++|+|+...
T Consensus 185 gi~A~GDv~~g~~l~~~A~~~g~~aa~~i~g~~~~ 219 (221)
T d1dxla1 185 GVYAIGDVIPGPMLAHKAEEDGVACVEYLAGKVGH 219 (221)
T ss_dssp TEEECSTTSSSCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEeccCCCcccHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999998654
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.97 E-value=7.2e-30 Score=262.21 Aligned_cols=219 Identities=22% Similarity=0.398 Sum_probs=178.6
Q ss_pred cceeeecCCccHHHHHHHHHHCC---CeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc-
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLG---FKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN- 466 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g---~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~- 466 (866)
.+|+||||||||++||.++++.| ++|++||++ .+||+|+|.||+|+|.++..++.++.+.+ ...+|+.
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~-------~~GG~cln~GciPsK~ll~~a~~~~~~~~-~~~~G~~i 73 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-------GIGGAAVLDDCVPSKTFIASTGLRTELRR-APHLGFHI 73 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-------CTTHHHHHTSHHHHHHHHHHHHHHHHHTT-TTTTTBC-
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC-------CCCceeecccccccEEEEeecchhhhhhh-hhhcCCcc
Confidence 57999999999999999988765 679999984 89999999999999999999888877765 5666654
Q ss_pred -ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEecccc-CcccEEEEEcCCc--eEEEecEEEEecCC
Q psy9583 467 -TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQ-NNFHEIQIINKTK--ETITAKYIIIATGS 542 (866)
Q Consensus 467 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~-~~~~~v~v~~~~g--~~i~~d~lViATGs 542 (866)
.....++|..+..+.+.+...+...+...++..+|+++.+...+.+... ...+.+.+...++ .++++|.+|+|||+
T Consensus 74 ~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~ 153 (233)
T d1xdia1 74 DFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA 153 (233)
T ss_dssp -----CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCE
T ss_pred cccCceeeeeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCceeeeecceeeeecCc
Confidence 3456789999999988888888888889999999999999888854321 2335566665555 57899999999998
Q ss_pred CCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHH
Q psy9583 543 KARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN 622 (866)
Q Consensus 543 ~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~ 622 (866)
.|+.+|.
T Consensus 154 ~p~~~~~------------------------------------------------------------------------- 160 (233)
T d1xdia1 154 SPRILPS------------------------------------------------------------------------- 160 (233)
T ss_dssp EECCCGG-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7765431
Q ss_pred HcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCC
Q psy9583 623 KQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCE 702 (866)
Q Consensus 623 ~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~ 702 (866)
|+.++.+.+.++..+++++++|+|.||++||
T Consensus 161 -------------------------------------------------~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~ 191 (233)
T d1xdia1 161 -------------------------------------------------GSVPNTSGLGLERVGIQLGRGNYLTVDRVSR 191 (233)
T ss_dssp -------------------------------------------------CEEECCSSSCTTTTTCCCBTTTBCCCCSSSB
T ss_pred -------------------------------------------------cccccccccccchhhhcccCCCcCCcCCCcc
Confidence 1223334455788899999999999999999
Q ss_pred CCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 703 TNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 703 Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
|++|+|||+|||++.+++.+.|..+|++||.||+|+.
T Consensus 192 T~~~gIyA~GDv~~~~~l~~~A~~~g~~aa~~~~g~~ 228 (233)
T d1xdia1 192 TLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGEG 228 (233)
T ss_dssp CSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999864
|
| >d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: CAT-like domain: Chloramphenicol acetyltransferase, CAT species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=1.4e-29 Score=253.67 Aligned_cols=184 Identities=11% Similarity=0.119 Sum_probs=156.5
Q ss_pred hHHHHHHHHHHhccccceEEEEeeeechHHHHHHHHhhhHHHhhccCccCHHHHHHHHHHHHHHhCCccceEEeCCeeEE
Q psy9583 178 LRLCIAERLLQSQANSAILTTFNEINMQSIIDLRLKYKDKFEKEHNVKLGFMSFFVKAVVSALKQYPIINASVDGNNIIY 257 (866)
Q Consensus 178 ~r~~ia~~m~~s~~~~p~~~~~~~~d~t~l~~~r~~~~~~~~~~~~~~~t~~~~~~ka~~~al~~~P~~n~~~~~~~~~~ 257 (866)
.||......+ +.+.||++++.++|+|+|.+++++ .++|++++++||+++||++||+||++|+++++++
T Consensus 12 ~Rk~~f~~f~--~~~~P~~~~t~~vDvT~l~~~~K~----------~~~sf~~~~~~a~~~Al~~~P~~n~~~~~~~i~~ 79 (213)
T d3claa_ 12 VRREHFEFYR--HRLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIV 79 (213)
T ss_dssp TTHHHHHHHH--HTSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEE
T ss_pred ccHHHHHHHh--CCCCCEEEEEEEEeHHHHHHHHHH----------cCCCeeHHHHHHHHHHHHhChHhhhEeccCeEEE
Confidence 4676666653 457899999999999999887754 2789999999999999999999999999999999
Q ss_pred ccceeEEEEEecCCceEEeEEecCCCCCHHHHHHHHHHHHHHHhcCC-CCccccCC-ceEEEEcCCCcCccccccccCCC
Q psy9583 258 HKYYDIGIAISSSRGLVVPILRNADTMSIADIEKKINEFINKAQDNK-LLPEEMSG-GTFTISNGGVFGSMLSTPIINPP 335 (866)
Q Consensus 258 ~~~~~i~~av~~~~gl~~pvi~~~~~~~~~~i~~~~~~~~~~~~~~~-l~~~~~~~-gt~tisn~g~~g~~~~~~ii~~p 335 (866)
++++|+|+||++++||++|+|++++++++.+|+++++++++++|+++ +.+++..| .+|++|++||+ .|||++|||
T Consensus 80 ~~~i~~~~aV~~~~gl~vp~i~~~~~~~l~~f~~~~~~~~~~ar~~~~~~~~~~~~~~~~~is~l~~~---~Ft~i~~~~ 156 (213)
T d3claa_ 80 WDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWV---NFDSFNLNV 156 (213)
T ss_dssp ESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTC---CCSCCCCCC
T ss_pred ecccceEEEEEcCCCeEEeeEecCCCCCHHHHHHHHHHHHHHHHhCCCCCccccCCCcEEEeeccCce---EeecccCCc
Confidence 99999999999999999999999999999999999999999999986 56665544 46777777766 789999998
Q ss_pred ceE------EEEeccceeeEEEeCCeeEeeeeeeeeecccccccccchhhhhhhh
Q psy9583 336 QSA------ILGVHAIKKRVIVENNNVVIRPINYFALSYDHRIIDGREAVLSLMS 384 (866)
Q Consensus 336 ~~~------il~vg~~~~~~~~~~~~~~ir~~~~~~l~~dhr~~dg~~a~~~~~~ 384 (866)
+.+ |+..|++.+ +++ |.+|++++++|||++||.++++|+..
T Consensus 157 ~~~~~~~~Pii~~Gk~~~----~~~----r~~m~lsls~dHrviDG~~aa~Fl~~ 203 (213)
T d3claa_ 157 ANFTDYFAPIITMAKYQQ----EGD----RLLLPLSVQVHHAVCDGFHVARFINR 203 (213)
T ss_dssp SCCTTCCSCEEEEECCEE----ETT----EEEEEEEEEEETTTCCHHHHHHHHHH
T ss_pred ccCccccccEEecCccEE----ECC----EEEEEEEEEecccccccHHHHHHHHH
Confidence 864 555554432 222 67899999999999999999988764
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.2e-29 Score=256.54 Aligned_cols=213 Identities=32% Similarity=0.548 Sum_probs=183.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+||++||||||||++||.++++.|.+|+|||++ .+||+|.+.||+|++.++..+..++.... ...+......
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~-------~~GG~c~n~g~~~~k~l~~~a~~~~~~~~-~~~~~~~~~~ 74 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-------KLGGTCVNVGCVPKKVMWNTAVHSEFMHD-HADYGFPSCE 74 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHT-TGGGTSCCCC
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-------CCCCccccchhhhhhhhhhHHHHHHHHhh-hhhccccccc
Confidence 599999999999999999999999999999984 89999999999999999988887776655 4445555566
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
..+++.....+.+..+..+.......++..+|+++.|+..+... +...+.. ....+.++.+++|||+.|..|+
T Consensus 75 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~-----~~~~~~~-~~~~~~~~~~~iatG~~p~vp~- 147 (221)
T d3grsa1 75 GKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSD-----PKPTIEV-SGKKYTAPHILIATGGMPSTPH- 147 (221)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSC-----SSCEEEE-TTEEEECSCEEECCCEEECCCC-
T ss_pred cchhhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeeccc-----cceeeee-eccccccceeEEecCccccCCC-
Confidence 77899999988888888888888888999999999999888654 3333332 3367899999999999887653
Q ss_pred CcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEE
Q psy9583 550 VKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629 (866)
Q Consensus 550 ~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~ 629 (866)
T Consensus 148 -------------------------------------------------------------------------------- 147 (221)
T d3grsa1 148 -------------------------------------------------------------------------------- 147 (221)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEE
Q psy9583 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIY 709 (866)
Q Consensus 630 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~Vy 709 (866)
|+.||++.|.|++.|++++++|+|.||+++|||+||||
T Consensus 148 ------------------------------------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~~~~T~~~gvy 185 (221)
T d3grsa1 148 ------------------------------------------ERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGIY 185 (221)
T ss_dssp ------------------------------------------TEEESCTTTTGGGTTCCBCTTSCBCCCTTCBCSSTTEE
T ss_pred ------------------------------------------ccccCCCCcCchhcCcEECCCccEEeCCCccccCCcEE
Confidence 23577888888999999999999999999999999999
Q ss_pred EecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 710 AIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 710 A~GD~a~~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
|+|||++.+++.+.|..+|++||++|++..
T Consensus 186 A~GDv~~~~~l~~~A~~~G~~aa~~~~~~~ 215 (221)
T d3grsa1 186 AVGDVCGKALLTPVAIAAGRKLAHRLFEYK 215 (221)
T ss_dssp ECGGGGTSSCCHHHHHHHHHHHHHHHHSCC
T ss_pred EEEEccCCcCcHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999864
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=3.3e-28 Score=250.27 Aligned_cols=221 Identities=32% Similarity=0.511 Sum_probs=181.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCC--cccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDN--EENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~--~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
+|||+||||||||++||.++++.|++|+|||+.+.. ..+..+||+|.+.+|+|++.+.......+.... ...+++..
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~-~~~~gi~~ 81 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKD-SRNYGWKL 81 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHH-TTTTTBCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhh-hhcccccc
Confidence 599999999999999999999999999999986321 123468999999999999999888877766655 56677765
Q ss_pred c-ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc--eEEEecEEEEecCCCC
Q psy9583 468 Q-NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK--ETITAKYIIIATGSKA 544 (866)
Q Consensus 468 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g--~~i~~d~lViATGs~p 544 (866)
. ....++..+..+....+..+...+...+++.+|+++.++..+.+. +.+.+....+ ..+.++.++++||+.|
T Consensus 82 ~~~~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~~~~~-----~~~~v~~~~~~~~~i~a~~ivi~~G~~p 156 (235)
T d1h6va1 82 EDTVKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGKFIGP-----HKIMATNNKGKEKVYSAERFLIATGERP 156 (235)
T ss_dssp CSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEEEEET-----TEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred ccceeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEeeccc-----cceecccccccccccccccceeecCCCc
Confidence 4 357899999999999999999999999999999999999999876 7777765444 5689999999999998
Q ss_pred cCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHc
Q psy9583 545 RSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~ 624 (866)
+.++.
T Consensus 157 ~~~~i--------------------------------------------------------------------------- 161 (235)
T d1h6va1 157 RYLGI--------------------------------------------------------------------------- 161 (235)
T ss_dssp CCCSS---------------------------------------------------------------------------
T ss_pred eeEEE---------------------------------------------------------------------------
Confidence 76532
Q ss_pred CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecC-CCcEEeCCCCCC
Q psy9583 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE-NNFIIVNDNCET 703 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-~G~i~Vd~~l~T 703 (866)
. .+++..+.++..+++++. .|+|.||++|||
T Consensus 162 ----------------------~--------------------------~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~T 193 (235)
T d1h6va1 162 ----------------------R--------------------------DSCTRTIGLETVGVKINEKTGKIPVTDEEQT 193 (235)
T ss_dssp ----------------------E--------------------------EESCTTSCCTTTTCCCCSSSCCBCCCTTSBC
T ss_pred ----------------------e--------------------------eccceeeccccceeeeccccCccccCCcccc
Confidence 0 011122235666788876 599999999999
Q ss_pred CCCCEEEecccCC-CCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 704 NIPNIYAIGDVVR-GPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 704 s~~~VyA~GD~a~-~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
|+|+|||+|||+. .+++++.|+.+|++||++|+|..
T Consensus 194 svpgIyA~GDv~~g~~~l~~~A~~eG~~aa~~~~g~~ 230 (235)
T d1h6va1 194 NVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGS 230 (235)
T ss_dssp SSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEEeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 9999999999985 55799999999999999999754
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.95 E-value=4.8e-28 Score=246.39 Aligned_cols=213 Identities=37% Similarity=0.677 Sum_probs=175.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhh--hhhcCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNS--FFEYGINT 467 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~--~~~~gi~~ 467 (866)
+||++||||||||++||..+++.|.+|+|||++ .+||+|++.+|+|++.+......++...+. ...+++..
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-------~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~ 77 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-------ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISV 77 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCC
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-------CCCCcccccccccchhhhhhHHHHhhhhhccccccceEEe
Confidence 499999999999999999999999999999985 799999999999999999888777766542 23345666
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
.....++.....+....+.........++...+++++.|+..+.+. ..+.. ++..+.+|++|+|||++|..+
T Consensus 78 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~-----~~~~~---~~~~i~a~~viiAtG~~p~~l 149 (220)
T d1lvla1 78 ASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDG-----KQVEV---DGQRIQCEHLLLATGSSSVEL 149 (220)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEET-----TEEEE---TTEEEECSEEEECCCEEECCB
T ss_pred ccceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCc-----ccccc---cceeEeeceeeEcCCCCcccc
Confidence 6677889999999888888888888889999999999999988766 55444 457899999999999998765
Q ss_pred CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCE
Q psy9583 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~ 627 (866)
|..
T Consensus 150 p~~----------------------------------------------------------------------------- 152 (220)
T d1lvla1 150 PRR----------------------------------------------------------------------------- 152 (220)
T ss_dssp TEE-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 400
Q ss_pred EEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCC
Q psy9583 628 IILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPN 707 (866)
Q Consensus 628 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~ 707 (866)
|....+.+...+++++ +|+|.||++|||++|+
T Consensus 153 -----------------------------------------------~~~~~~~~~~~~~~~~-~g~i~vd~~~~T~~~~ 184 (220)
T d1lvla1 153 -----------------------------------------------PRTKGFNLECLDLKMN-GAAIAIDERCQTSMHN 184 (220)
T ss_dssp -----------------------------------------------ECCSSSSGGGSCCCEE-TTEECCCTTCBCSSTT
T ss_pred -----------------------------------------------ccccCCcceeeehhhc-CCcccccchhhcCCCC
Confidence 0011111344455555 6779999999999999
Q ss_pred EEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Q psy9583 708 IYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSI 742 (866)
Q Consensus 708 VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~ 742 (866)
|||+|||++.+.+++.|..+|++||++|+|+...+
T Consensus 185 I~A~GDv~~~~~l~~~a~~~g~~~a~~i~G~~~~~ 219 (220)
T d1lvla1 185 VWAIGDVAGEPMLAHRAMAQGEMVAEIIAGKARRF 219 (220)
T ss_dssp EEECGGGGCSSCCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred EEEEEEeCCcccchhhhhhhHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999987654
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.95 E-value=8.4e-28 Score=245.85 Aligned_cols=225 Identities=46% Similarity=0.810 Sum_probs=187.8
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++|||+||||||||++||.+|++.|++|+|||+...+.....+||.|.+.+|.|++.+.................++...
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~ 81 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG 81 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccC
Confidence 57999999999999999999999999999999986666667889999999999999988888777777665666778777
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEc--CCceEEEecEEEEecCCCCcC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIIN--KTKETITAKYIIIATGSKARS 546 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~--~~g~~i~~d~lViATGs~p~~ 546 (866)
...+++..+..+.......+...+..+++..+|+++.+.....+. ....... .+...+.++.+++|||+.|..
T Consensus 82 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~G~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~atG~~~~~ 156 (229)
T d3lada1 82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAG-----KKVEVTAADGSSQVLDTENVILASGSKPVE 156 (229)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECST-----TCEEEECTTSCEEEECCSCEEECCCEEECC
T ss_pred cceeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEEeEEccccc-----ceeeccccCccceeeecccccccCCccccc
Confidence 788899999999988888888888999999999999999888655 4444433 233678899999999988765
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
+|.
T Consensus 157 ~~~----------------------------------------------------------------------------- 159 (229)
T d3lada1 157 IPR----------------------------------------------------------------------------- 159 (229)
T ss_dssp CTE-----------------------------------------------------------------------------
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 320
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCC
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIP 706 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~ 706 (866)
. +++..+.+++.|++++++|+|+||++|||++|
T Consensus 160 ---------------------~--------------------------~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vp 192 (229)
T d3lada1 160 ---------------------R--------------------------PVTTDLLAADSGVTLDERGFIYVDDYCATSVP 192 (229)
T ss_dssp ---------------------E--------------------------ECCTTCCSSCCSCCBCTTSCBCCCTTSBCSST
T ss_pred ---------------------c--------------------------ccccccchHhcCeeecCCCcEEecccccCCCC
Confidence 0 00011125677889999999999999999999
Q ss_pred CEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Q psy9583 707 NIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSI 742 (866)
Q Consensus 707 ~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~ 742 (866)
+|||+|||+.++.+.+.|..+|+.||++|+|+...+
T Consensus 193 giyA~GDv~~g~~l~~~A~~~G~~aa~~i~g~~~~~ 228 (229)
T d3lada1 193 GVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQM 228 (229)
T ss_dssp TEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CEEEEeCCcchHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999987654
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.9e-27 Score=244.18 Aligned_cols=229 Identities=40% Similarity=0.711 Sum_probs=183.2
Q ss_pred hcccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 386 ~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
.|+++|||+||||||||++||.+|++.|++|+|||+. +.+||+|.+.+|+|++.+.........+......+|+
T Consensus 1 ~m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~------~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi 74 (233)
T d1v59a1 1 TINKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKR------GKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGI 74 (233)
T ss_dssp CEEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS------SSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTE
T ss_pred CCCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEec------CCcceEeEEeeccccccccccchhHHHhhhhHhhcCe
Confidence 3788999999999999999999999999999999987 6899999999999999999998888887776788888
Q ss_pred ccc-ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 466 NTQ-NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 466 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
... ....++.....+....+..+......+.++.+++++.++..+.+. +.+.+.... |...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~G~a~f~~~-----~~~~v~~~~-------------~~~~ 136 (233)
T d1v59a1 75 DVNGDIKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDE-----TKIRVTPVD-------------GLEG 136 (233)
T ss_dssp EECSCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSS-----SEEEEECCT-------------TCTT
T ss_pred eEeeceecchhhhhheeeeEEEEeecceeeeeccCCeEEEEEEEEEecC-----CCcEEEecc-------------cccc
Confidence 643 456778888888888888888888889999999999999888765 444443211 1000
Q ss_pred cCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHc
Q psy9583 545 RSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~ 624 (866)
.. .....+. .++
T Consensus 137 ~~------~~~~~~~----------~~~---------------------------------------------------- 148 (233)
T d1v59a1 137 TV------KEDHILD----------VKN---------------------------------------------------- 148 (233)
T ss_dssp CC------SSCEEEE----------EEE----------------------------------------------------
T ss_pred ee------eeeeecc----------CCe----------------------------------------------------
Confidence 00 0000000 000
Q ss_pred CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
+. ....+..+.++|++|+++.|.++.+|++++++|+|.||++++|+
T Consensus 149 ---------------------i~-------------i~~~~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~ 194 (233)
T d1v59a1 149 ---------------------II-------------VATGSEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSK 194 (233)
T ss_dssp ---------------------EE-------------ECCCEEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCS
T ss_pred ---------------------EE-------------EecccccceecccccCCCCcCchhcCeEEcCCCcEEECCeEecC
Confidence 00 11124455678999999988899999999999999999999999
Q ss_pred CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCC
Q psy9583 705 IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKH 740 (866)
Q Consensus 705 ~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~ 740 (866)
.|+|||+|||+.++.+++.|..+|+.||++|++...
T Consensus 195 ~~~v~A~GD~~~g~~l~~~a~~~G~~aa~~i~~~~~ 230 (233)
T d1v59a1 195 FPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTGHG 230 (233)
T ss_dssp STTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEcCCcccHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999987653
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.94 E-value=7.4e-27 Score=240.90 Aligned_cols=222 Identities=31% Similarity=0.530 Sum_probs=178.0
Q ss_pred cccceeeecCCccHHHHHHHHHHCCC-eEEEEeccCC--CcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEWKD--NEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~~~--~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
++|||+||||||||++||.++++.|. +|+|+|+.+. +.....+||+|.+.||+|+|.++..++..+.+.+ ...+|+
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~K~l~~~a~~~~~~~~-~~~~Gi 80 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRE-SAGFGW 80 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHH-GGGGTE
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCCcccccccccccccccchhhhhccccccccccccc-cccccc
Confidence 57999999999999999999999985 5999998742 1223347999999999999999999988877765 677777
Q ss_pred ccc--ccccCHHHHHHHHHHHHHhhhhhHHHHHHhC-CcEEEEeEEEEeccccCcccEEEEEc------CCceEEEecEE
Q psy9583 466 NTQ--NVTLNLQKMLERKNNIIKKNNSGILFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIIN------KTKETITAKYI 536 (866)
Q Consensus 466 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~------~~g~~i~~d~l 536 (866)
... ...++|..+..+++..+..+...++..+.+. +++++.+...+.+. ....... ...+.+.+|.+
T Consensus 81 ~~~~~~v~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~~v~i~~g~a~~~~~-----~~~~~~~~~~~~~~~~e~i~~~~i 155 (240)
T d1feca1 81 ELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDN-----HTVLVRESADPNSAVLETLDTEYI 155 (240)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEET-----TEEEEESSSSTTSCEEEEEEEEEE
T ss_pred cccccccccCHHHHHHHhhcEEeccccceeeeeccCCcEEEEEeecccccc-----ccccccccccccccceEEEecceE
Confidence 643 3467999999999999988888887777654 79999999888655 3333322 11267899999
Q ss_pred EEecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHH
Q psy9583 537 IIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKK 616 (866)
Q Consensus 537 ViATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~ 616 (866)
+++||+.|.....
T Consensus 156 ~ia~G~~p~~~~~------------------------------------------------------------------- 168 (240)
T d1feca1 156 LLATGSWPQHLGI------------------------------------------------------------------- 168 (240)
T ss_dssp EECCCEEECCCCS-------------------------------------------------------------------
T ss_pred EEecCCceeEccc-------------------------------------------------------------------
Confidence 9999988743210
Q ss_pred HHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEE
Q psy9583 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFII 696 (866)
Q Consensus 617 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 696 (866)
..|+...|.++.++++++++|+|.
T Consensus 169 --------------------------------------------------------~~~~~~~l~l~~~gv~~~~~G~I~ 192 (240)
T d1feca1 169 --------------------------------------------------------EVPRSQTLQLEKAGVEVAKNGAIK 192 (240)
T ss_dssp --------------------------------------------------------BEESCTTSCGGGGTCCBCTTSCBC
T ss_pred --------------------------------------------------------cccccCCCCccccCeEECCCCcEE
Confidence 002223345788899999999999
Q ss_pred eCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 697 VNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 697 Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
||++||||+|+|||+|||++++++++.|..+|++||+++++..
T Consensus 193 vd~~~~Ts~~~iyA~GDv~~~~~~~~~A~~eg~~aa~~~~~~~ 235 (240)
T d1feca1 193 VDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANK 235 (240)
T ss_dssp CCTTCBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSSC
T ss_pred cCcccCcCCCCEEEEEECCCCccchhhHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999853
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.94 E-value=4.2e-27 Score=245.85 Aligned_cols=217 Identities=22% Similarity=0.387 Sum_probs=160.9
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
.++||++|||||++|+.||..+++.|.+|++||+. +.+||+|.+.||+|++.+...++...........+++..
T Consensus 40 ~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~------~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~ 113 (261)
T d1mo9a1 40 PREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRW------PFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPD 113 (261)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS------SSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCC
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc------CccccccccccccchHHHHhhHHhHHHHHHhhhhccccc
Confidence 35799999999999999999999999999999997 789999999999999999998888777665333333332
Q ss_pred -cccccCHHHHHHHHHHHHHhhhhhH-HHHHHhC-CcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 468 -QNVTLNLQKMLERKNNIIKKNNSGI-LFLFKKN-KIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 468 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
.....++.................. ....... ...++.+...+.+. +++.+ +++++++|++++|||++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~-----~~v~~---~g~~i~ad~viiAtG~~P 185 (261)
T d1mo9a1 114 MTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN-----HTVEA---AGKVFKAKNLILAVGAGP 185 (261)
T ss_dssp CTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET-----TEEEE---TTEEEEBSCEEECCCEEC
T ss_pred cccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeee-----ccccc---ccceEeeeeeeeccCCCC
Confidence 2345667766655444443333221 1222333 44556666666665 66665 567889999999999888
Q ss_pred cCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHc
Q psy9583 545 RSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQ 624 (866)
Q Consensus 545 ~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~ 624 (866)
+.++..... ...++
T Consensus 186 ~~~~i~~~~---------------------------~~~~l--------------------------------------- 199 (261)
T d1mo9a1 186 GTLDVPEQP---------------------------RSAEL--------------------------------------- 199 (261)
T ss_dssp CCCCSTCEE---------------------------CCHHH---------------------------------------
T ss_pred CcCcccccc---------------------------ccccc---------------------------------------
Confidence 765422100 00111
Q ss_pred CCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCC
Q psy9583 625 GLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETN 704 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts 704 (866)
.+.+|++++++|+|.||++||||
T Consensus 200 ---------------------------------------------------------~~~~Gl~~~~~G~I~Vn~~~~Ts 222 (261)
T d1mo9a1 200 ---------------------------------------------------------AKILGLDLGPKGEVLVNEYLQTS 222 (261)
T ss_dssp ---------------------------------------------------------HHHHTCCBCTTSCBCCCTTSBCS
T ss_pred ---------------------------------------------------------ccceeeeeccCCEEEeCCCcccC
Confidence 12346778889999999999999
Q ss_pred CCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCC
Q psy9583 705 IPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS 741 (866)
Q Consensus 705 ~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~ 741 (866)
+|+|||+|||+++|.+++.|..||++||+||+|+...
T Consensus 223 ~~~IyA~GDv~~~~~l~~~A~~~G~~aa~~i~G~k~~ 259 (261)
T d1mo9a1 223 VPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGEKIS 259 (261)
T ss_dssp STTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHHHHHCCCCCC
Confidence 9999999999999999999999999999999997643
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.1e-26 Score=210.35 Aligned_cols=122 Identities=56% Similarity=0.911 Sum_probs=118.8
Q ss_pred CCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHH
Q psy9583 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIA 823 (866)
Q Consensus 744 ~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~ 823 (866)
|..+|+++|++|++++||+||+||++.|+++.+.++++...+|+...+++.||+|+++|+++++|||+|++|++|+|+|+
T Consensus 1 Y~~iP~~vft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~G~~Kli~d~~~~~ilGa~ivG~~A~elI~ 80 (123)
T d1v59a3 1 YNNIPSVMYSHPEVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIA 80 (123)
T ss_dssp TTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred CCCCCEEeecCCccEEEECCHHHHHhcccCceEEEEecccccchhccCCCcEEEEEEEECCCCEEEEEEEEchHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccC
Q psy9583 824 EAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865 (866)
Q Consensus 824 ~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 865 (866)
.+++||++++|++||.+++|+|||++|++++|++.+.++.+|
T Consensus 81 ~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~~~~~~ih 122 (123)
T d1v59a3 81 EAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKAIH 122 (123)
T ss_dssp HHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHHSCCSC
T ss_pred HHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999999887
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.94 E-value=8.1e-26 Score=231.21 Aligned_cols=222 Identities=35% Similarity=0.603 Sum_probs=171.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
+|||+|||||||||+||.+|++.|++|+|||+. ..+||+|.+.||+|++.+....+....... ...+|.....
T Consensus 6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~------~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~-~~~~G~~~~~ 78 (229)
T d1ojta1 6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERY------KTLGGVCLNVGCIPSKALLHNAAVIDEVRH-LAANGIKYPE 78 (229)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS------SCSSHHHHHHSHHHHHHHHHHHHHHHHHHH-GGGGTCCCCC
T ss_pred ccCEEEECcCHHHHHHHHHHHHCCCeEEEEecc------CCCCCeeeccccchhhhhhhhhhhHHhhhh-HhhcCCcccC
Confidence 599999999999999999999999999999997 679999999999999999888877766554 6677887777
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFPG 549 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p~ 549 (866)
..+.+..+..+.+.....+...+..+.....++++.+...+.+. ....... ...
T Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~vi~g~~~~~~~-----~~~~~~~------~~~--------------- 132 (229)
T d1ojta1 79 PELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDP-----HHLEVSL------TAG--------------- 132 (229)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEET-----TEEEEEE------EEE---------------
T ss_pred CcccHHHHHHHHHHHHHHHhcchHhHhhcCceEEEEeeeeecCC-----ccccccc------ccc---------------
Confidence 88889999888888888888888888888899988877666433 1111100 000
Q ss_pred CcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEE
Q psy9583 550 VKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNII 629 (866)
Q Consensus 550 ~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~ 629 (866)
T Consensus 133 -------------------------------------------------------------------------------- 132 (229)
T d1ojta1 133 -------------------------------------------------------------------------------- 132 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eCceEEEEEEcCCeEEEEEeeCCCCccceeEEEecc-EEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCE
Q psy9583 630 LNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFD-KLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNI 708 (866)
Q Consensus 630 ~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D-~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~V 708 (866)
. .......... .....++ .++.+.++.|+...+.++.+|++++++|+|.||++||||+|||
T Consensus 133 --------~-~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~~~~TsvpgV 194 (229)
T d1ojta1 133 --------D-AYEQAAPTGE---------KKIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMRTNVPHI 194 (229)
T ss_dssp --------E-ETTEEEEEEE---------EEEEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCTTSBCSSTTE
T ss_pred --------c-cccccccccc---------ccceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCCCccCCCCCE
Confidence 0 0000000000 0123333 3444445667776666899999999999999999999999999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Q psy9583 709 YAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSI 742 (866)
Q Consensus 709 yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~ 742 (866)
||+|||++.|.+++.|+.+|++||+||+|+...+
T Consensus 195 yAaGDv~~~~~l~~~A~~eG~~Aa~~i~G~~~~~ 228 (229)
T d1ojta1 195 YAIGDIVGQPMLAHKAVHEGHVAAENCAGHKAYF 228 (229)
T ss_dssp EECGGGTCSSCCHHHHHHHHHHHHHHHTTCCCCC
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999987554
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.94 E-value=1.9e-26 Score=208.77 Aligned_cols=123 Identities=53% Similarity=0.919 Sum_probs=119.1
Q ss_pred CCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHH
Q psy9583 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIA 823 (866)
Q Consensus 744 ~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~ 823 (866)
|..+|+++|++|++++||+||+||++.|+++.+.++++....|+...+++.||+|+++|+++++|||+|++|++|+|+|+
T Consensus 1 Y~~iP~~vft~PeiA~vGlte~~A~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~~~~~ilG~~ivG~~A~elI~ 80 (123)
T d1dxla3 1 YDKVPGVVYTNPEVASVGKTEEQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIH 80 (123)
T ss_dssp TTSCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred CCCCCEEeecCCceEEEECCHHHHHHcCCCEEEEEEeccccchhhhcCCCcceEEEEEECCCCEEEEEEEehhhHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccCC
Q psy9583 824 EAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866 (866)
Q Consensus 824 ~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~ 866 (866)
.+++||++++|++||++++++|||++|++.+|++.+.++.+|.
T Consensus 81 ~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~ih~ 123 (123)
T d1dxla3 81 EAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDKPIHI 123 (123)
T ss_dssp HHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999999999999999999998874
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.94 E-value=1.9e-26 Score=209.25 Aligned_cols=123 Identities=48% Similarity=0.849 Sum_probs=119.2
Q ss_pred CCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHH
Q psy9583 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIA 823 (866)
Q Consensus 744 ~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~ 823 (866)
|..+|+++|++|++++||+||++|+++|+++.+..+++..+.|+...+++.||+|+++|+++++|||+|++|++|+|+|+
T Consensus 1 Y~~vP~~vft~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~t~~ILGa~ivg~~A~elI~ 80 (124)
T d3lada3 1 YDLIPAVIYTHPEIAGVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQ 80 (124)
T ss_dssp TTCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHH
T ss_pred CCcCCeEecCcCceeEeehhHHHHhhcccccEEEEEECccCcchhhcCCCCeEEEEEEECCCCEEEEEEEEcccHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccCC
Q psy9583 824 EAVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866 (866)
Q Consensus 824 ~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~ 866 (866)
.++++|++|+|++||++++|+|||++|++.+|++.+.++.+|.
T Consensus 81 ~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~ih~ 123 (124)
T d3lada3 81 QGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHAIHV 123 (124)
T ss_dssp HHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHHHhcCCCccc
Confidence 9999999999999999999999999999999999999998873
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.94 E-value=1.8e-26 Score=208.72 Aligned_cols=122 Identities=34% Similarity=0.511 Sum_probs=118.5
Q ss_pred CCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHH
Q psy9583 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAE 824 (866)
Q Consensus 745 ~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~ 824 (866)
..+|+++|++|++++||+||+||+++|+++.+.++++..+.|+...+++.||+|+++|+++++|||+|++|++|+|+|+.
T Consensus 2 ~~iP~vvft~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~ra~~~~~~~g~vklv~d~~t~~ILG~~ivG~~A~elI~~ 81 (123)
T d1lvla3 2 AAIAAVCFTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTA 81 (123)
T ss_dssp SCCCEEECSSSEEEEEECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHH
T ss_pred CCCCEEEeCCCccEEEECCHHHHhhcchhhhcceeeccccccceecCcchhheeeeeecccccceEEEEEeCchhhHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccCC
Q psy9583 825 AVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSINY 866 (866)
Q Consensus 825 ~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~~ 866 (866)
++++|++++|++||++++|+|||++|+++++++.++++.+|.
T Consensus 82 ~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~~~h~ 123 (123)
T d1lvla3 82 FAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGHALHI 123 (123)
T ss_dssp HHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTCCSCC
T ss_pred HHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999998874
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.93 E-value=6.4e-26 Score=206.40 Aligned_cols=121 Identities=32% Similarity=0.471 Sum_probs=117.0
Q ss_pred CCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHH
Q psy9583 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAE 824 (866)
Q Consensus 745 ~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~ 824 (866)
..+|+++|++|++++||+||++|+++|+++.+..+++....|+...+++.||+|+++|+++|+|||+|++|++|+|+|+.
T Consensus 2 r~IP~~vft~PeiA~VGlte~~A~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~g~iLGa~ivG~~A~ElI~~ 81 (128)
T d1ojta3 2 RVIPGVAYTSPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGE 81 (128)
T ss_dssp CCCCEEECSSSCEEEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHH
T ss_pred CcCCEeecCCCceeeeeccHHHHHHcCCCcccceeeccchhhHHhcCCccceEEEEEeCCCCeEEEEEEEhhhHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCHHHHccccccCCChhHHHHHHHHHhhhhccC
Q psy9583 825 AVIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIENRSIN 865 (866)
Q Consensus 825 ~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~~~~~~ 865 (866)
+++||++++|++||++++|+|||++|++.+|++.++++.+|
T Consensus 82 ~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~~~ 122 (128)
T d1ojta3 82 VCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGTCTD 122 (128)
T ss_dssp HHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHTCCTT
T ss_pred HHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHHcCCccc
Confidence 99999999999999999999999999999999999988765
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1.7e-25 Score=226.82 Aligned_cols=211 Identities=33% Similarity=0.540 Sum_probs=183.1
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++|||+||||||||++||.++++.|.+|+|||++ .+||+|.+.+|+|++.+...++.++.+......+++...
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-------~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~ 73 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-------ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTT 73 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-------CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-------CcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCC
Confidence 4699999999999999999999999999999985 799999999999999999999988888776777888877
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p 548 (866)
...++|.++..+.+..+..+...++.++++.+|++..+....... ..... ++..+.++++++|||+.|..|
T Consensus 74 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~-----~~~~~---~~~~~~~~~~iiatG~~p~ip- 144 (217)
T d1gesa1 74 INKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA-----KTLEV---NGETITADHILIATGGRPSHP- 144 (217)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET-----TEEEE---TTEEEEEEEEEECCCEEECCC-
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee-----eeecC---CCceeeeeeeeeecCccccCC-
Confidence 788999999999999999998889999999999999887776544 44443 567899999999999866321
Q ss_pred CCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEE
Q psy9583 549 GVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 549 ~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 628 (866)
T Consensus 145 -------------------------------------------------------------------------------- 144 (217)
T d1gesa1 145 -------------------------------------------------------------------------------- 144 (217)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCE
Q psy9583 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNI 708 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~V 708 (866)
..|+++.+.++..++.++++|++.+|++++|+.|+|
T Consensus 145 --------------------------------------------~ip~~~~l~l~~~gv~~~~~~~i~~d~~~~t~~~~i 180 (217)
T d1gesa1 145 --------------------------------------------REPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGI 180 (217)
T ss_dssp --------------------------------------------EEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTE
T ss_pred --------------------------------------------CCCCcCCcccccccEEEcCCccEeeCchhccCCCcE
Confidence 224445555677788888999999999999999999
Q ss_pred EEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 709 YAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 709 yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
|++||+..+..+++.+.++|+.+++++++..
T Consensus 181 ~~iG~g~~g~ela~~~~~~G~~v~~~~~~~~ 211 (217)
T d1gesa1 181 YAVGDNTGAVELTPVAVAAGRRLSERLFNNK 211 (217)
T ss_dssp EECSGGGTSCCCHHHHHHHHHHHHHHHHTTC
T ss_pred EEECCCccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999865
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.93 E-value=3.9e-25 Score=227.33 Aligned_cols=221 Identities=30% Similarity=0.499 Sum_probs=167.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCC-eEEEEeccC--CCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEWK--DNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~~--~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
++|||+||||||||++||.++++.|. +|+|+|+.. .......+||+|+|.||+|++.++..++..+.... ...+|.
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip~k~l~~~a~~~~~~~~-~~~~G~ 80 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLMVTGAQYMEHLRE-SAGFGW 80 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHHHHHHHHHHHHHHHHHH-GGGGTE
T ss_pred CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccccccccccchhhhhhHHHHHHHHH-HHhcCC
Confidence 56999999999999999999999886 588998752 12233468999999999999999999888777655 556665
Q ss_pred cc--cccccCHHHHHHHHHHHHHhhhhhHHHHH-HhCCcEEEEeEEEEeccccCcccEEEEEcCC------ceEEEecEE
Q psy9583 466 NT--QNVTLNLQKMLERKNNIIKKNNSGILFLF-KKNKIKFFHGHAIFTGKIQNNFHEIQIINKT------KETITAKYI 536 (866)
Q Consensus 466 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~------g~~i~~d~l 536 (866)
.. .....+|..+..+.+..+..........+ ...+|+++.+...+... ......... ...++++.+
T Consensus 81 ~~~~~~~~~d~~~l~~~k~~~v~~~~~~~~~~l~~~~gV~vi~g~g~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~v 155 (238)
T d1aoga1 81 EFDRTTLRAEWKNLIAVKDEAVLNINKSYDEMFRDTEGLEFFLGWGSLESK-----NVVNVRESADPASAVKERLETEHI 155 (238)
T ss_dssp ECCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEESEEEEEET-----TEEEEESSSSTTSCEEEEEEBSCE
T ss_pred cccCccccccHHHHHHHHHHhhhccccceeeeeecccccEEEEEEeecccc-----ccccccccccccccccccccccce
Confidence 43 34466899999999888888877777666 46799999988777544 333332110 133445555
Q ss_pred EEecCCCCcCCCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHH
Q psy9583 537 IIATGSKARSFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKK 616 (866)
Q Consensus 537 ViATGs~p~~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~ 616 (866)
++++|..|.
T Consensus 156 ~i~~~~~~~----------------------------------------------------------------------- 164 (238)
T d1aoga1 156 LLASGSWPH----------------------------------------------------------------------- 164 (238)
T ss_dssp EECCCEEEC-----------------------------------------------------------------------
T ss_pred eeecccccc-----------------------------------------------------------------------
Confidence 555444332
Q ss_pred HHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEE
Q psy9583 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFII 696 (866)
Q Consensus 617 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~ 696 (866)
...|..|++..|.++..++.++ +|+|.
T Consensus 165 ----------------------------------------------------~~~~~~~~~~~l~~~~~gv~~~-~G~I~ 191 (238)
T d1aoga1 165 ----------------------------------------------------MPNGRSPRTKDLQLQNAGVMIK-NGGVQ 191 (238)
T ss_dssp ----------------------------------------------------CCCCEEECCGGGCGGGTTCCEE-TTEEC
T ss_pred ----------------------------------------------------cccccccceeeecccccEEEEc-CCeEE
Confidence 1233445555555667788886 88999
Q ss_pred eCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 697 VNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 697 Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
||++|||++|+|||+|||.+.+++.+.|..+|++||++|+|..
T Consensus 192 vde~~~T~~~~iyAvGDv~~~~~l~~~A~~eg~~aa~~i~g~~ 234 (238)
T d1aoga1 192 VDEYSRTNVSNIYAIGDVTNRVMLTPVAINEAAALVDTVFGTT 234 (238)
T ss_dssp CCTTCBCSSTTEEECGGGGTSCCCHHHHHHHHHHHHHHHHSSS
T ss_pred ecCCeeeccCCEEEEEEecCCccchhhHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999864
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.93 E-value=1.1e-25 Score=201.17 Aligned_cols=115 Identities=43% Similarity=0.587 Sum_probs=111.2
Q ss_pred CccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHH
Q psy9583 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEA 825 (866)
Q Consensus 746 ~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~ 825 (866)
.+|+++|++|++++||+||+||+++|+++.+.++++..+.|+.+.+++.||+|+++|+++++|||+|++|++|+|+|+.+
T Consensus 1 AvP~~vft~PeiA~VGlte~ea~~~g~~~~v~~~~~~~~~ra~~~~~~~G~vKli~~~~~~~iLG~~ivg~~A~elI~~~ 80 (115)
T d1ebda3 1 AIPAVVFSDPECASVGYFEQQAKDEGIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAEL 80 (115)
T ss_dssp CCCEEECSSSCEEEEECCHHHHHTTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHH
T ss_pred CcCeEecCCCceEEEeCCHHHHhhhhhhhhccceecccceeeeecCCCcEEEEEEEeCCcceEEEEEEEcCCHHHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHccccccCCChhHHHHHHHHHhh
Q psy9583 826 VIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860 (866)
Q Consensus 826 ~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~ 860 (866)
+++|++++|++||.+++|+|||++|++++||+.++
T Consensus 81 ~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~al 115 (115)
T d1ebda3 81 GLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVAL 115 (115)
T ss_dssp HHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHTC
T ss_pred HHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998764
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=1.1e-25 Score=201.94 Aligned_cols=115 Identities=29% Similarity=0.471 Sum_probs=111.7
Q ss_pred CccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHHHHHH
Q psy9583 746 ALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASELIAEA 825 (866)
Q Consensus 746 ~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~eli~~~ 825 (866)
.+|+++|++|++++||+||++|++.|++|.+.++++..++|+.+.+++.||+|+++|+++++|||+|++|++|.|+|+.+
T Consensus 3 ~iP~~vft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ilGa~ivG~~A~elI~~~ 82 (118)
T d1xdia2 3 TVAATVFTRPEIAAVGVPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPI 82 (118)
T ss_dssp GCEEEECSSSEEEEEESCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHH
T ss_pred CCCEEecCCChheeehhhHHHHHhCcccceeeeecccchhhhhhcccchhheEEEEecCCCceEEEEEEcCcHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCHHHHccccccCCChhHHHHHHHHHhh
Q psy9583 826 VIAIEFRASSEDIARICHVHPSLSEAMKEAAMSIE 860 (866)
Q Consensus 826 ~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~~~~~~ 860 (866)
++||++++|++||.+++|+|||++|++.+||++++
T Consensus 83 ~~ai~~~~t~~~l~~~i~~hPT~sE~l~~aa~~l~ 117 (118)
T d1xdia2 83 AVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM 117 (118)
T ss_dssp HHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998864
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.91 E-value=4e-27 Score=245.71 Aligned_cols=177 Identities=28% Similarity=0.504 Sum_probs=142.9
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
||++||||||||+.||.++++.|++|+|||++ .+||+|+|.||+|+|.++..+........ ...+|+.. ..
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-------~~GGtc~n~gciPsK~l~~~~~~~~~~~~-~~~~G~~~-~~ 72 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-------RLGGTCVNVGCVPKKIMFNAASVHDILEN-SRHYGFDT-KF 72 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-------STTHHHHHTSHHHHHHHHHHHHHHHHHHH-GGGGTCCC-CC
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-------CCCCeEEeeCCcchHHHHhhhhcccchhc-cccccccc-hh
Confidence 89999999999999999999999999999984 79999999999999999999888877665 67788875 36
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEc-----------CCceEEEecEEEEe
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIIN-----------KTKETITAKYIIIA 539 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~-----------~~g~~i~~d~lViA 539 (866)
.++|..+..+....+..+...+...+++.+|+++.|+..+.+. +++.+.. .+.+.+++|++|||
T Consensus 73 ~~~~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~-----~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIA 147 (259)
T d1onfa1 73 SFNLPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE-----NRILIKGTKDNNNKDNGPLNEEILEGRNILIA 147 (259)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC-------------------------------CBSSEEEC
T ss_pred hhhhhhHHhhhheeeeccccchhhhcccccceEEeeecccccc-----cccccccceeccccccCccceEEEeeeeEEEe
Confidence 7899999999999999999999999999999999999887665 5554432 12357999999999
Q ss_pred cCCCCc----CCCCCcCCCceEecchhhhccccCCCeEEEECCcHHH
Q psy9583 540 TGSKAR----SFPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIG 582 (866)
Q Consensus 540 TGs~p~----~~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~g 582 (866)
||++|. .+|+++++...+++++.++.....+ +..|+|+|.+|
T Consensus 148 TGs~P~~~~~~~~~~~l~~~~i~ts~~~~~~d~~~-~t~Vig~gaiG 193 (259)
T d1onfa1 148 VGNKPVGRSPDTENLKLEKLNVETNNNYIVVDENQ-RTSVNNIYAVG 193 (259)
T ss_dssp CCCCBCCBCCTTTTSSCTTTTCCBSSSCEEECTTC-BCSSSSEEECS
T ss_pred cCCCCccccccccccccccceeeecccccccccCC-ceeEeeEEEEE
Confidence 999994 5677777788889998888877666 45788888776
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=7.9e-24 Score=188.97 Aligned_cols=110 Identities=24% Similarity=0.391 Sum_probs=104.6
Q ss_pred CCCccEEEEccCceeeeecCHHHHHhc--CCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHH
Q psy9583 744 FNALPFVIYTFPEIASVGKTEQYLKKH--NISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASEL 821 (866)
Q Consensus 744 ~~~~p~~~~~~~~~a~vGl~e~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~el 821 (866)
|..+|+++|++|++++||+||+||+++ +.++.+..+++....++...+++.||+|+++|+++++|||+|++|++|+||
T Consensus 1 Y~~vP~~vft~PeiA~VGltE~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~i~~~~~~~ilG~~ivG~~A~El 80 (115)
T d3grsa3 1 YNNIPTVVFSHPPIGTVGLTEDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEM 80 (115)
T ss_dssp CTTCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCEEecCcCccEEEecCcHHHHHHhCCcccceeEeeeeecchhhcccccceeEEEEEecCCceEEEEEEeccCHHHH
Confidence 567999999999999999999999887 567999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHccccccCCChhHHHH
Q psy9583 822 IAEAVIAIEFRASSEDIARICHVHPSLSEAMK 853 (866)
Q Consensus 822 i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~ 853 (866)
|+.++++|++++|++||++++|+|||++|+|.
T Consensus 81 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~ 112 (115)
T d3grsa3 81 LQGFAVAVKMGATKADFDNTVAIHPTSSEELV 112 (115)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred HHHHHHHHHcCCCHHHHhhCccCCCCHHHHHH
Confidence 99999999999999999999999999999874
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.6e-23 Score=186.90 Aligned_cols=110 Identities=24% Similarity=0.373 Sum_probs=103.9
Q ss_pred CCCccEEEEccCceeeeecCHHHHHhc--CCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCChHHH
Q psy9583 744 FNALPFVIYTFPEIASVGKTEQYLKKH--NISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPMASEL 821 (866)
Q Consensus 744 ~~~~p~~~~~~~~~a~vGl~e~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~el 821 (866)
|..+|+++|++|++++||+||+||+++ +.++.+..+++....++...+++.||+|+++|+++++|||+|++|++|+||
T Consensus 1 Y~~vP~~vft~PeiA~VGlte~eA~~~~~~~~v~~~~~~~~~~~~a~~~~~~~g~~k~v~~~~~~~IlGa~ivG~~A~El 80 (115)
T d1gesa3 1 YSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEM 80 (115)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHHCGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHH
T ss_pred CCCCCeEecCCCccEEEeCCHHHHHHHcCCcccceeeeecccccccceeccccceEEEEEecCCcEEEEEEEECCCHHHH
Confidence 567999999999999999999999998 456888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCHHHHccccccCCChhHHHH
Q psy9583 822 IAEAVIAIEFRASSEDIARICHVHPSLSEAMK 853 (866)
Q Consensus 822 i~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~ 853 (866)
|+.+++||++++|++||++++|+|||++|+|.
T Consensus 81 I~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~ 112 (115)
T d1gesa3 81 LQGFAVALKMGATKKDFDNTVAIHPTAAEEFV 112 (115)
T ss_dssp HHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred HHHHHHHHHcCCcHHHHhcCcccCCcHHHHHH
Confidence 99999999999999999999999999999874
|
| >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.8e-22 Score=171.98 Aligned_cols=81 Identities=27% Similarity=0.498 Sum_probs=76.4
Q ss_pred ccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCC-EEecCCEEEEEecC
Q psy9583 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGS-IVTSNQVIALIDTD 80 (866)
Q Consensus 2 ~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~-~v~~g~~l~~~~~~ 80 (866)
+-++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||.+|+|.++++++|+ .|++|++|+.+..+
T Consensus 4 ~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i~~~ 83 (102)
T d1y8ob1 4 PHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEK 83 (102)
T ss_dssp SEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEEESS
T ss_pred CCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEEecC
Confidence 34789999999999999999999999999999999999999999999999999999999999997 69999999999765
Q ss_pred Cc
Q psy9583 81 IS 82 (866)
Q Consensus 81 ~~ 82 (866)
.+
T Consensus 84 ~~ 85 (102)
T d1y8ob1 84 EA 85 (102)
T ss_dssp GG
T ss_pred Cc
Confidence 44
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.87 E-value=3.4e-22 Score=181.50 Aligned_cols=112 Identities=21% Similarity=0.315 Sum_probs=103.6
Q ss_pred CCCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhcCC-ceEEEEEEEECCCCcEEEEEEECCChHHHH
Q psy9583 744 FNALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGE-TSGMVKILSDMKSDEILGIHIIGPMASELI 822 (866)
Q Consensus 744 ~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~~~~~~~ilG~~~~g~~a~eli 822 (866)
|..+|+++|++|++++||+||+||+++|.++.+...+|....++....+ ..+|+|+++|+++|+|||+|++|++|+|||
T Consensus 1 y~~VP~aVfT~PeiA~VGlte~eA~~~g~~~~v~~~~~~~~~~a~~~~~~~~~~~klv~~~~~g~iLGa~ivG~~A~ElI 80 (128)
T d1feca3 1 HTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEII 80 (128)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHCSEEEEEEEEECCHHHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHH
T ss_pred CCCCCEEecCCCcceEEECCHHHHhhhhcCcceeecccchHHHHHhccccccceEEEeecCCCCceeEEEEECCCHHHHH
Confidence 4679999999999999999999999999999999999888888876544 567899999999999999999999999999
Q ss_pred HHHHHHHHCCCCHHHHccccccCCChhHHHHHH
Q psy9583 823 AEAVIAIEFRASSEDIARICHVHPSLSEAMKEA 855 (866)
Q Consensus 823 ~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~~ 855 (866)
+.++++|++++|++||++++|+|||++|.|..+
T Consensus 81 ~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~ 113 (128)
T d1feca3 81 QSVAICLKMGAKISDFYNTIGVHPTSAEELCSM 113 (128)
T ss_dssp HHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSC
T ss_pred HHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHH
Confidence 999999999999999999999999999998653
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Probab=99.87 E-value=1.9e-22 Score=164.73 Aligned_cols=77 Identities=42% Similarity=0.750 Sum_probs=75.1
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+.++.+
T Consensus 2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~v~~G~~l~~i~~~ 78 (79)
T d1ghja_ 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKLTEG 78 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTCEEEEECCC
T ss_pred cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCEECCCCEEEEEeCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999864
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.4e-22 Score=166.12 Aligned_cols=82 Identities=24% Similarity=0.472 Sum_probs=78.0
Q ss_pred Cc-cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEec
Q psy9583 1 MA-LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 1 m~-~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~ 79 (866)
|+ +++|+||+||++|++|+|++|++++||.|++||+||+|||||++++|+||.+|+|.++++++|+.|++|++|+.|+.
T Consensus 1 M~~~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~v~~G~~l~~i~~ 80 (87)
T d1k8ma_ 1 MGQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDIET 80 (87)
T ss_dssp CCCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTSEEEEEEC
T ss_pred CCccEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCEECCCCEEEEEEc
Confidence 44 67899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCc
Q psy9583 80 DIS 82 (866)
Q Consensus 80 ~~~ 82 (866)
+..
T Consensus 81 ~~~ 83 (87)
T d1k8ma_ 81 EAL 83 (87)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.86 E-value=4e-22 Score=179.27 Aligned_cols=110 Identities=22% Similarity=0.332 Sum_probs=94.7
Q ss_pred CCCccEEEEccCceeeeecCHHHHHhcCCc--EEEEEEecCCc----hhhhhcCCceEEEEEEEECCCCcEEEEEEECCC
Q psy9583 744 FNALPFVIYTFPEIASVGKTEQYLKKHNIS--YNVGIFPFLAN----SRARILGETSGMVKILSDMKSDEILGIHIIGPM 817 (866)
Q Consensus 744 ~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~--~~~~~~~~~~~----~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~ 817 (866)
|..+|+++|++|++++||+||+||++++.+ +.+....+... .++...+...||+|+++++++++|||+|++|++
T Consensus 1 Y~~vP~~vfT~PeiA~VGlte~~A~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~IlGa~ivG~~ 80 (119)
T d1onfa3 1 YKLIPTVIFSHPPIGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLHIIGLN 80 (119)
T ss_dssp CSSCCEEECCSSCEEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEEEESTT
T ss_pred CCcCCeEeccCCccEEEECCHHHHHHhcccccccccccccCccccchhhhhhccCCCceEEEEEecCCCcEEEEEEeCCC
Confidence 568999999999999999999999998764 44434443332 344444566799999999999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCHHHHccccccCCChhHHHH
Q psy9583 818 ASELIAEAVIAIEFRASSEDIARICHVHPSLSEAMK 853 (866)
Q Consensus 818 a~eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~ 853 (866)
|+|||+.+++||++|+|++||++++|+|||++|+|.
T Consensus 81 A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~ 116 (119)
T d1onfa3 81 ADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFL 116 (119)
T ss_dssp HHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHH
Confidence 999999999999999999999999999999999985
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.85 E-value=1e-22 Score=166.56 Aligned_cols=77 Identities=29% Similarity=0.663 Sum_probs=74.8
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
++|+||+||++|+||+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|++|++|+.|+.+
T Consensus 2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~v~~G~~l~~ie~~ 78 (80)
T d1laba_ 2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAP 78 (80)
T ss_dssp BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSEECSSSCSBCBBCS
T ss_pred eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999754
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.84 E-value=4.7e-21 Score=177.65 Aligned_cols=111 Identities=17% Similarity=0.205 Sum_probs=98.0
Q ss_pred CCccEEEEccCceeeeecCHHHHHhcCCcEEEEEEecCCc----------------hhhhhcCCceEEEEEEEECCCCcE
Q psy9583 745 NALPFVIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLAN----------------SRARILGETSGMVKILSDMKSDEI 808 (866)
Q Consensus 745 ~~~p~~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~~kli~~~~~~~i 808 (866)
..+|+++|++|++++||+||+||++.|+++.+..+++... .++...+++.||+|+++|+++++|
T Consensus 2 ~~iP~vvfT~PeiA~VGlTe~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~vKlv~d~~t~~I 81 (140)
T d1mo9a3 2 KNYPDFLHTHYEVSFLGMGEEEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKV 81 (140)
T ss_dssp CSCCEEEESSSEEEEEECCHHHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBE
T ss_pred CCCCcEeccCCccEEEECCHHHHHHcCCCeEEEEEeecccccceeeeeeccchhhhhhhhhcCCCCceEEEEEecCCCcE
Confidence 3579999999999999999999999999999999875432 122345677899999999999999
Q ss_pred EEEEEECCChHHHHHHHHHHHHCCCCHHHHccc--cccCCChhHHHHHH
Q psy9583 809 LGIHIIGPMASELIAEAVIAIEFRASSEDIARI--CHVHPSLSEAMKEA 855 (866)
Q Consensus 809 lG~~~~g~~a~eli~~~~~~i~~~~~~~~l~~~--~~~~Pt~~e~~~~~ 855 (866)
||+|++|++|.|+|+.++++|++++|++||+++ +|+|||++|.+..+
T Consensus 82 lGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~~l 130 (140)
T d1mo9a3 82 LGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRL 130 (140)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHHHH
Confidence 999999999999999999999999999999986 78999999987433
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.5e-22 Score=165.35 Aligned_cols=77 Identities=44% Similarity=0.836 Sum_probs=74.6
Q ss_pred cEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEec
Q psy9583 3 LIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDT 79 (866)
Q Consensus 3 ~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~ 79 (866)
.++|+||+||++|++|+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|++|++|++++.
T Consensus 2 ~iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~v~~G~~l~~i~e 78 (80)
T d1pmra_ 2 SVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CCCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CeEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999974
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.81 E-value=4.8e-20 Score=183.26 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=125.7
Q ss_pred eEEEECCcHHHHHHHHHHHhcC--CcEEEEecCCcCCC--c-cc----------HHHHHHHHHHHHHcCCEEEeCceEEE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFLN--T-VD----------EEIAKKAFHLLNKQGLNIILNTKIHD 636 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g--~~Vtli~~~~~~l~--~-~d----------~~~~~~l~~~l~~~GV~i~~~~~v~~ 636 (866)
||+|||||++|+|+|..|++++ .+|+++++.+.+.. . ++ ..+.....+.|+++||++++++.|++
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~ 81 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA 81 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence 6999999999999999999985 47999998776521 0 11 11222235678899999999999999
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCC------CccccCeeecCCCcEEeCCCCCCCCCCEEE
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL------NIDKIGLKVNENNFIIVNDNCETNIPNIYA 710 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l------~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA 710 (866)
++.+++.+.+... .+|+ ...+.+|.+++|+|..|+.... .++ .+++++++|+|.||++|||+.|+|||
T Consensus 82 i~~~~~~v~~~~~-~~g~----~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~-~~~~~~~~G~i~vd~~~~T~~~~IyA 155 (198)
T d1nhpa1 82 IQPKEHQVTVKDL-VSGE----ERVENYDKLIISPGAVPFELDGVRPNTAWLK-GTLELHPNGLIKTDEYMRTSEPDVFA 155 (198)
T ss_dssp EETTTTEEEEEET-TTCC----EEEEECSEEEECCCEEECCCCCEEESCGGGT-TTSCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred Eeeccccceeeec-cccc----ccccccceeeEeecceeeccccccccccccc-ccceeccCCceecCCcccccccceEE
Confidence 9987777655432 2333 4578999999999987654311 022 26778889999999999999999999
Q ss_pred ecccCCC----------CCcHHHHHHHHHHHHHHHhCCCCC
Q psy9583 711 IGDVVRG----------PMLAHKAEEEGIMVAEHISGQKHS 741 (866)
Q Consensus 711 ~GD~a~~----------~~~~~~A~~~g~~aa~~i~g~~~~ 741 (866)
+|||+.. ..++..|.+||++||+||.+...+
T Consensus 156 ~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~~~~~ 196 (198)
T d1nhpa1 156 VGDATLIKYNPADTEVNIALATNARKQGRFAVKNLEEPVKP 196 (198)
T ss_dssp CGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSSCCCC
T ss_pred ecceeecccccCCCcccccHHHHHHHHHHHHHHhhCCCCCC
Confidence 9999853 246899999999999999876554
|
| >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Neisseria meningitidis [TaxId: 487]
Probab=99.81 E-value=6.3e-21 Score=157.08 Aligned_cols=79 Identities=22% Similarity=0.518 Sum_probs=75.6
Q ss_pred ccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 2 ~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
++++|+||+||+ +++++|++|++++||.|++||+||+|||||++++++||.+|+|.++++++|+.|++|++|+.++.++
T Consensus 1 aiiei~~P~lg~-~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~v~~G~~l~~ie~~g 79 (81)
T d1gjxa_ 1 ALVELKVPDIGG-HENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGGLIVVVEAEG 79 (81)
T ss_dssp CCEECCCCCCSS-CSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSSCCCEECCSC
T ss_pred CcEEEECCCCCC-CcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCEECCCCEEEEEeccc
Confidence 468999999995 8999999999999999999999999999999999999999999999999999999999999998654
|
| >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=4e-20 Score=151.85 Aligned_cols=78 Identities=26% Similarity=0.490 Sum_probs=74.3
Q ss_pred ccEEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 2 ALIEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 2 ~~~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
|+++|+||++|+ ++++|++|++++||.|++||+|++|||||++++|+||.+|+|.++++++|+.|++|++|+.++.++
T Consensus 1 M~~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~eg 78 (80)
T d1qjoa_ 1 MVKEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEG 78 (80)
T ss_dssp CEEEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTCCCEEEESCC
T ss_pred CCeEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCEECCCCEEEEEecCc
Confidence 568999999997 489999999999999999999999999999999999999999999999999999999999998654
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=7.3e-20 Score=167.34 Aligned_cols=111 Identities=16% Similarity=0.273 Sum_probs=91.8
Q ss_pred CCCccEEEEccCceeeeecCHHHHHhcCCc--EEEEEEecCCchhhhhc-CCceEEEEEEEE-CCCCcEEEEEEECCChH
Q psy9583 744 FNALPFVIYTFPEIASVGKTEQYLKKHNIS--YNVGIFPFLANSRARIL-GETSGMVKILSD-MKSDEILGIHIIGPMAS 819 (866)
Q Consensus 744 ~~~~p~~~~~~~~~a~vGl~e~~a~~~~~~--~~~~~~~~~~~~~~~~~-~~~~g~~kli~~-~~~~~ilG~~~~g~~a~ 819 (866)
|..+|+++|++|++++||+||+||++++.+ +.+....+....+.... ....++.+++++ +++++|||+|++|++|.
T Consensus 1 Y~~VP~~vfT~PeiA~VGlte~eA~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ILGa~ivg~~A~ 80 (133)
T d1h6va3 1 YDNVPTTVFTPLEYGCCGLSEEKAVEKFGEENIEVYHSFFWPLEWTVPSRDNNKCYAKVICNLKDNERVVGFHVLGPNAG 80 (133)
T ss_dssp CSSCCEEECSSSCEEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTCEEEEEEEEGGGTTEEEEEEEESTTHH
T ss_pred CCCCCEEecCcchheeEeCCHHHHHHhccccccchheeccchhhhhhhhhcccccceEEEEEecCcccEEEEEEeCCCHH
Confidence 567999999999999999999999998654 44444555555555443 344566665655 57899999999999999
Q ss_pred HHHHHHHHHHHCCCCHHHHccccccCCChhHHHHH
Q psy9583 820 ELIAEAVIAIEFRASSEDIARICHVHPSLSEAMKE 854 (866)
Q Consensus 820 eli~~~~~~i~~~~~~~~l~~~~~~~Pt~~e~~~~ 854 (866)
|||+.+++||++++|++||++++|+|||++|+|..
T Consensus 81 ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~ 115 (133)
T d1h6va3 81 EVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTT 115 (133)
T ss_dssp HHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGG
T ss_pred HHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHH
Confidence 99999999999999999999999999999999843
|
| >d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.78 E-value=1.4e-19 Score=164.34 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=95.6
Q ss_pred EEEccCceeeeecCHHHHHhcCCcEEEEEEecCCchhhhhcCCceEEEEEEEECCCCcEEEEEEECCC-hHHHHHHHHHH
Q psy9583 750 VIYTFPEIASVGKTEQYLKKHNISYNVGIFPFLANSRARILGETSGMVKILSDMKSDEILGIHIIGPM-ASELIAEAVIA 828 (866)
Q Consensus 750 ~~~~~~~~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~-a~eli~~~~~~ 828 (866)
.+| ||++++||+||+||++.|+++.+..++.... ...+.+.+.||+||++|+++++|||+|++|++ +.|+|+.+++|
T Consensus 9 ~vf-d~eiasvGlte~eA~~~g~~~~~~~~~~~~~-~~~~~~~~~g~~Kli~d~~t~~IlG~~ivG~~~a~e~I~~~~~a 86 (126)
T d1nhpa3 9 AVF-DYKFASTGINEVMAQKLGKETKAVTVVEDYL-MDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLA 86 (126)
T ss_dssp EET-TEEEEEEECCHHHHHHHTCCCEEEEEEEESS-CTTCTTCCEEEEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHH
T ss_pred eEc-CccEEEecccHHHHHHCCCCEEEEEEecCcc-hhhcCCCcceeEEEEEECCCCCEEEEEEEechhHHHHHHHHHHH
Confidence 345 9999999999999999999999988764432 22344667899999999999999999999975 99999999999
Q ss_pred HHCCCCHHHHcccccc-CCChhHH---HHHHHHHhhhh
Q psy9583 829 IEFRASSEDIARICHV-HPSLSEA---MKEAAMSIENR 862 (866)
Q Consensus 829 i~~~~~~~~l~~~~~~-~Pt~~e~---~~~~~~~~~~~ 862 (866)
|++++|++||+++.++ ||+++|+ ++.+|+.++.+
T Consensus 87 i~~~~t~~dL~~~~~~yhPt~se~~~~l~~aA~~a~~~ 124 (126)
T d1nhpa3 87 IQAKMTIEDLAYADFFFQPAFDKPWNIINTAALEAVKQ 124 (126)
T ss_dssp HHTTCBHHHHHTCCCCCCTTTCCSSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHhcCcccCCCCCchhHHHHHHHHHHHHhC
Confidence 9999999999999876 7999996 67888887654
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.78 E-value=1.8e-18 Score=155.76 Aligned_cols=116 Identities=45% Similarity=0.828 Sum_probs=108.0
Q ss_pred CCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeC
Q psy9583 552 FDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631 (866)
Q Consensus 552 ~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~ 631 (866)
.++..++++++++++...|++++|||||++|+|+|..|+++|++|+++++.+++++.+|+++.+.+++.|+++||+++++
T Consensus 4 ~d~~~v~~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~ 83 (119)
T d3lada2 4 VDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLG 83 (119)
T ss_dssp CCSSSEEEHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred CCCCEEEchhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecC
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeec
Q psy9583 632 TKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 632 ~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G 672 (866)
+++++++.+++++.+++...++ ..++.||.|++|+|
T Consensus 84 ~~v~~i~~~~~~v~v~~~~~~~-----~~~~~~D~vlvAvG 119 (119)
T d3lada2 84 ARVTGTEVKNKQVTVKFVDAEG-----EKSQAFDKLIVAVG 119 (119)
T ss_dssp CEEEEEEECSSCEEEEEESSSE-----EEEEEESEEEECSC
T ss_pred cEEEEEEEeCCEEEEEEEECCC-----CEEEECCEEEEeeC
Confidence 9999999998888888875443 25799999999998
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.77 E-value=1.7e-19 Score=176.80 Aligned_cols=156 Identities=21% Similarity=0.327 Sum_probs=119.2
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCccc-HHHHHHHH----------HHHHHcCCEEEeCceEEEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVD-EEIAKKAF----------HLLNKQGLNIILNTKIHDIK 638 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d-~~~~~~l~----------~~l~~~GV~i~~~~~v~~i~ 638 (866)
..+|+|||||++|+|+|..|+++|.+++++.+.++.++.++ +.+...+. ..+...+++++++..++++.
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~ 82 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFD 82 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEE
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEeccccccc
Confidence 35699999999999999999999999888877666654332 22222111 22345689999999999988
Q ss_pred EcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCC---ccccCeeecCCCcEEeCCCCCCCCCCEEEecccC
Q psy9583 639 INKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN---IDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715 (866)
Q Consensus 639 ~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~---l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a 715 (866)
.+... +.+ .+|+ ++++|.+++|+|..|+..+++ ....++.. +|+|.||+++||+.|+|||+|||+
T Consensus 83 ~~~~~--~~~--~~g~------~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~--~~~I~vd~~~~ts~~~IyA~GD~a 150 (183)
T d1d7ya1 83 PQAHT--VAL--SDGR------TLPYGTLVLATGAAPRAVLANDALARAAGLAC--DDGIFVDAYGRTTCPDVYALGDVT 150 (183)
T ss_dssp TTTTE--EEE--TTSC------EEECSEEEECCCEEECCEEECCHHHHHTTCCB--SSSEECCTTCBCSSTTEEECGGGE
T ss_pred cccce--eEe--cCCc------EeeeeeEEEEEEEEcccccccccccceeeEee--CCcEEeccceeccccccchhhhhh
Confidence 66543 333 3676 899999999999999876543 23445654 355999999999999999999998
Q ss_pred CCC----------CcHHHHHHHHHHHHHHHhC
Q psy9583 716 RGP----------MLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 716 ~~~----------~~~~~A~~~g~~aa~~i~g 737 (866)
..+ .+++.|.+||++||+||+.
T Consensus 151 ~~~~~~~g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 151 RQRNPLSGRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp EEECTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred ccceeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence 522 4789999999999999974
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.76 E-value=1.3e-18 Score=142.29 Aligned_cols=76 Identities=17% Similarity=0.457 Sum_probs=71.8
Q ss_pred EEEecCCCCCCCCeEEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 4 IEVKIPKLSESISEATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 4 ~~~~~p~~g~~~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
..|+||++|+ +|+|++|++++||.|++||+|++||+||+.++|+||.+|+|.++++++|+.|++|++|+.++..+.
T Consensus 2 ~~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~~l~~ie~~~~ 77 (79)
T d1iyua_ 2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPAAG 77 (79)
T ss_dssp EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTSEEEEEECCCS
T ss_pred CEEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCEECCCCEEEEEecCcc
Confidence 3589999994 799999999999999999999999999999999999999999999999999999999999987653
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.75 E-value=3.8e-18 Score=154.39 Aligned_cols=116 Identities=30% Similarity=0.535 Sum_probs=107.6
Q ss_pred CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCce
Q psy9583 554 ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTK 633 (866)
Q Consensus 554 ~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~ 633 (866)
...++++++++++...|++++|||||++|+|+|..|+++|.+||++++++++++.+|+++.+.+++.|+++||++++++.
T Consensus 10 ~~~i~ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~ 89 (125)
T d1ojta2 10 DPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTK 89 (125)
T ss_dssp CTTEECHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCE
T ss_pred CCcEEcHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 634 v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
+++++..++++.+.++..+|. ..++++|.|++|+|+
T Consensus 90 v~~v~~~~~g~~v~~~~~~g~----~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 90 TVAVEPKEDGVYVTFEGANAP----KEPQRYDAVLVAAGR 125 (125)
T ss_dssp EEEEEEETTEEEEEEESSSCC----SSCEEESCEEECCCE
T ss_pred EEEEEEcCCcEEEEEEeCCCC----eEEEEcCEEEEecCC
Confidence 999999988888888765554 347999999999996
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=6.1e-18 Score=152.80 Aligned_cols=120 Identities=40% Similarity=0.644 Sum_probs=104.1
Q ss_pred CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCE
Q psy9583 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLN 627 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~ 627 (866)
|+...++..++++++++++...|++++|||||++|+|+|..|+++|++||++++++++++.+|+++++.+++.|+++||+
T Consensus 1 Pgi~~d~~~v~ts~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~ 80 (122)
T d1v59a2 1 PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLD 80 (122)
T ss_dssp TTCCCCSSSEECHHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCE
T ss_pred CCCccCCCEEEehHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccce
Confidence 45556678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCceEEEEEEcCCeE--EEEEeeCCCCccceeEEEeccEEEEe
Q psy9583 628 IILNTKIHDIKINKENV--LINYSNKSTNVKTEIITSIFDKLLIA 670 (866)
Q Consensus 628 i~~~~~v~~i~~~~~~~--~v~~~~~~g~~~~~~~~~~~D~vi~a 670 (866)
+++++++++++..+++. .+++.+..+ +...++++|.|++|
T Consensus 81 i~~~~~v~~v~~~~~~~~v~~~~~~~~~---~~~~~ie~D~vlvA 122 (122)
T d1v59a2 81 FKLSTKVISAKRNDDKNVVEIVVEDTKT---NKQENLEAEVLLVA 122 (122)
T ss_dssp EECSEEEEEEEEETTTTEEEEEEEETTT---TEEEEEEESEEEEC
T ss_pred EEeCCEEEEEEEeCCCcEEEEEEEeCCC---CCeEEEEeCEEEEC
Confidence 99999999999876654 444443221 22457999999986
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.74 E-value=5.6e-18 Score=163.16 Aligned_cols=150 Identities=22% Similarity=0.368 Sum_probs=115.8
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---cccH---------HHHHHHHHHHHHcCCEEEeCceEEEEEE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---TVDE---------EIAKKAFHLLNKQGLNIILNTKIHDIKI 639 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---~~d~---------~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 639 (866)
||+|||||++|+|+|..|++ +.+|+++++.+.... .+.. .+.....+.+++.++++++++.++.+..
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~ 80 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDR 80 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccccc
Confidence 79999999999999999965 679999998765321 1111 1112224567788999999999998864
Q ss_pred cCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCCC--
Q psy9583 640 NKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG-- 717 (866)
Q Consensus 640 ~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~-- 717 (866)
... +... ++. ++++|.+++|+|..|+ .+ ++..|++.+ ++ |.||+++||+.|+|||+|||+..
T Consensus 81 ~~~---~~~~--~~~------~i~~D~li~a~G~~~~-~~--~~~~gl~~~-~~-i~v~~~~~t~~~~i~aiGD~~~~~~ 144 (167)
T d1xhca1 81 GRK---VVIT--EKG------EVPYDTLVLATGAPNV-DL--ARRSGIHTG-RG-ILIDDNFRTSAKDVYAIGDCAEYSG 144 (167)
T ss_dssp TTT---EEEE--SSC------EEECSEEEECCCEECC-HH--HHHTTCCBS-SS-EECCTTSBCSSTTEEECGGGEEBTT
T ss_pred ccc---cccc--ccc------ccccceeEEEEEecCC-ch--hhhcCceeC-Cc-eeeccccEecCCCeEEeeecccCCC
Confidence 432 1222 444 7999999999999775 34 467788875 44 99999999999999999999864
Q ss_pred --CCcHHHHHHHHHHHHHHHhCC
Q psy9583 718 --PMLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 718 --~~~~~~A~~~g~~aa~~i~g~ 738 (866)
+..++.|++||+++|+||+|+
T Consensus 145 ~~~~~~~~a~~~a~~~a~~i~Ge 167 (167)
T d1xhca1 145 IIAGTAKAAMEQARVLADILKGE 167 (167)
T ss_dssp BCCCSHHHHHHHHHHHHHHHTTC
T ss_pred eEEChHHHHHHHHHHHHHHcCCC
Confidence 357899999999999999884
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.74 E-value=9.7e-18 Score=151.79 Aligned_cols=122 Identities=40% Similarity=0.664 Sum_probs=108.9
Q ss_pred CCCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCC
Q psy9583 547 FPGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGL 626 (866)
Q Consensus 547 ~p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV 626 (866)
+|+.+.++..++|+++++++...|++++|||||++|+|+|..|+++|.+||+++|++++++.+|+++.+.+.+.|+++||
T Consensus 2 iPgi~~d~~~v~ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI 81 (123)
T d1dxla2 2 LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGM 81 (123)
T ss_dssp BTTBCCCSSSEECHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSC
T ss_pred CCCCcCCCCeEEeHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccc
Confidence 45666678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEee
Q psy9583 627 NIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAI 671 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~ 671 (866)
++++++++++++..++++.+.+...++. +...+++|.|++|.
T Consensus 82 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g---~~~~i~~D~vLvAA 123 (123)
T d1dxla2 82 KFKLKTKVVGVDTSGDGVKLTVEPSAGG---EQTIIEADVVLVSA 123 (123)
T ss_dssp CEECSEEEEEEECSSSSEEEEEEESSSC---CCEEEEESEEECCC
T ss_pred eEEcCCceEEEEEccCeEEEEEEECCCC---eEEEEEcCEEEEcC
Confidence 9999999999998888887777653331 13579999999873
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.73 E-value=2.1e-18 Score=169.15 Aligned_cols=158 Identities=23% Similarity=0.323 Sum_probs=118.6
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcc---------------cHHHHHHHHHHHHHcCCEEEeCce
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTV---------------DEEIAKKAFHLLNKQGLNIILNTK 633 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~---------------d~~~~~~l~~~l~~~GV~i~~~~~ 633 (866)
..++|+|||||++|+|+|..|+++|.+++++.+.+...... ...............+..+..+..
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQ 81 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeeccce
Confidence 35799999999999999999999999988887666433210 111112223455667788888888
Q ss_pred EEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCC-ccccCeeecCCCcEEeCCCCCCCCCCEEEec
Q psy9583 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN-IDKIGLKVNENNFIIVNDNCETNIPNIYAIG 712 (866)
Q Consensus 634 v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~-l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~G 712 (866)
+..+..+... +.. .++. ++++|.+++++|.+|+.+.+. ++..++.. +|.+.||++|||++|+|||+|
T Consensus 82 ~~~~~~~~~~--v~~--~~~~------~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~--~~~i~Vd~~~~ts~~~vya~G 149 (185)
T d1q1ra1 82 VTAINRDRQQ--VIL--SDGR------ALDYDRLVLATGGRPLIPNCELASAAGLQV--DNGIVINEHMQTSDPLIMAVG 149 (185)
T ss_dssp EEEEETTTTE--EEE--TTSC------EEECSEEEECCCEEEEEECCHHHHHTTCCB--SSSEECCTTSBCSSTTEEECG
T ss_pred eeeecccccE--EEe--ecee------EEEeeeeeeeeecccCCCCchhHHhCCccc--cCccccCCccccchhhhhcch
Confidence 8777654432 222 3554 899999999999988765543 34555554 566999999999999999999
Q ss_pred ccCCC----------CCcHHHHHHHHHHHHHHHhCC
Q psy9583 713 DVVRG----------PMLAHKAEEEGIMVAEHISGQ 738 (866)
Q Consensus 713 D~a~~----------~~~~~~A~~~g~~aa~~i~g~ 738 (866)
||+.. ..+++.|.+||+.||+||+|+
T Consensus 150 D~~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~G~ 185 (185)
T d1q1ra1 150 DCARFHSQLYDRWVRIESVPNALEQARKIAAILCGK 185 (185)
T ss_dssp GGEEEEETTTTEEEECCSHHHHHHHHHHHHHHHTTC
T ss_pred hhhccccccCCcccchhhHHHHHHHHHHHHHHccCC
Confidence 99863 247999999999999999985
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.9e-18 Score=171.92 Aligned_cols=159 Identities=16% Similarity=0.277 Sum_probs=120.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCCcCCC---cc-------------------------------cHH--
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNFLN---TV-------------------------------DEE-- 612 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~~~l~---~~-------------------------------d~~-- 612 (866)
.+++|||||++|+++|..|++.+. +|+++.+.+.+.- .+ +++
T Consensus 5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (213)
T d1m6ia1 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY 84 (213)
T ss_dssp EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence 468999999999999999998875 5999987544310 00 000
Q ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecC-
Q psy9583 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNE- 691 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~- 691 (866)
........+++.||+++++++|++|+.++.. +.+ .+|+ ++++|.+|+|+|..|+...+ .+..+++++.
T Consensus 85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~--V~l--~dG~------~i~~d~lViAtG~~~~~~~l-~~~~gl~~~~~ 153 (213)
T d1m6ia1 85 VSAQDLPHIENGGVAVLTGKKVVQLDVRDNM--VKL--NDGS------QITYEKCLIATGGTEPNVEL-AKTGGLEIDSD 153 (213)
T ss_dssp BCTTTTTTSTTCEEEEEETCCEEEEEGGGTE--EEE--TTSC------EEEEEEEEECCCEEEECCTT-HHHHTCCBCTT
T ss_pred hhhhhHHHHHHCCeEEEeCCEEEEeeccCce--eee--ccce------eeccceEEEeeeeecchhhh-hhccchhhhhh
Confidence 0111123456789999999999999876553 344 3776 89999999999987665443 4667888753
Q ss_pred CCcEEeCCCCCCCCCCEEEecccCCC---------CCcHHHHHHHHHHHHHHHhCCCCC
Q psy9583 692 NNFIIVNDNCETNIPNIYAIGDVVRG---------PMLAHKAEEEGIMVAEHISGQKHS 741 (866)
Q Consensus 692 ~G~i~Vd~~l~Ts~~~VyA~GD~a~~---------~~~~~~A~~~g~~aa~~i~g~~~~ 741 (866)
.|.|.||++|||+ |+|||+|||+.. +.++..|..||++||+||+|...+
T Consensus 154 ~~~i~vd~~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~g~~~~ 211 (213)
T d1m6ia1 154 FGGFRVNAELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAAKP 211 (213)
T ss_dssp TCSEECCTTCEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCCCC
T ss_pred hhhhhhhHhcCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhcCCCCC
Confidence 4789999999998 999999999852 357899999999999999998754
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.71 E-value=8.3e-17 Score=144.55 Aligned_cols=111 Identities=31% Similarity=0.524 Sum_probs=101.9
Q ss_pred ceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 555 NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 555 ~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
..++++++++++...|++++|||||++|+|+|..|+++|.+||++++++++++.+|+++++.+.+.|+++||++++++.+
T Consensus 7 ~~i~~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~~~v 86 (117)
T d1ebda2 7 NRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTNALA 86 (117)
T ss_dssp SSEECHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESEEE
T ss_pred CCEEChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcCCEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEe
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIA 670 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a 670 (866)
++++..++++.+.+.. +|+ ..++++|.||+.
T Consensus 87 ~~i~~~~~~~~v~~~~-~g~----~~~i~~D~Vlvs 117 (117)
T d1ebda2 87 KGAEEREDGVTVTYEA-NGE----TKTIDADYVLVT 117 (117)
T ss_dssp EEEEEETTEEEEEEEE-TTE----EEEEEESEEEEC
T ss_pred EEEEEcCCEEEEEEEe-CCC----EEEEEeEEEEEC
Confidence 9999988888877763 333 357999999974
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=7e-17 Score=146.61 Aligned_cols=117 Identities=21% Similarity=0.388 Sum_probs=104.6
Q ss_pred eEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 556 LILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 556 ~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
+.+|+++++.+...|++++|||||++|+|+|..|+++|.+||+++|++++++.+|+++++.+.+.|+++||+++++++++
T Consensus 8 ~~~ts~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 87 (125)
T d3grsa2 8 LGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVK 87 (125)
T ss_dssp GSBCHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEE
T ss_pred ccCCHHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCeEEEEEee-CCCCccceeEEEeccEEEEeec
Q psy9583 636 DIKINKENVLINYSN-KSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~-~~g~~~~~~~~~~~D~vi~a~G 672 (866)
+++.+++++.+.+.. ..|..+.....+++|.|++|+|
T Consensus 88 ~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 88 EVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 999988887666543 3444344445788999999998
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=4.8e-17 Score=145.58 Aligned_cols=109 Identities=23% Similarity=0.449 Sum_probs=100.5
Q ss_pred eEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 556 LILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 556 ~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
+++++++++++...|++++|||||++|+|+|..|+++|.+||++++.+++++.+|+++++++++.|+++||++++++.++
T Consensus 7 ~~~t~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~ 86 (116)
T d1gesa2 7 YGIDSDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPK 86 (116)
T ss_dssp GSBCHHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEE
T ss_pred ccCCHHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEeec
Q psy9583 636 DIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 636 ~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G 672 (866)
++..+++ .+.+.+. +|+ ++++|.|++|+|
T Consensus 87 ~i~~~~~~~~~v~~~--~g~------~~~~D~vi~a~G 116 (116)
T d1gesa2 87 AVVKNTDGSLTLELE--DGR------SETVDCLIWAIG 116 (116)
T ss_dssp EEEECTTSCEEEEET--TSC------EEEESEEEECSC
T ss_pred EEEEcCCcEEEEEEC--CCC------EEEcCEEEEecC
Confidence 9988754 4555554 776 899999999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.69 E-value=1.3e-16 Score=143.26 Aligned_cols=111 Identities=23% Similarity=0.415 Sum_probs=99.3
Q ss_pred ceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhc---CCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeC
Q psy9583 555 NLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRL---GSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631 (866)
Q Consensus 555 ~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~---g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~ 631 (866)
..++|+++++++...|++++|||||++|+|+|..|.++ |.+|+++++.+++++.+|+++++.+++.|+++||+++++
T Consensus 3 e~~~ts~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~ 82 (117)
T d1feca2 3 DLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTH 82 (117)
T ss_dssp GGCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEET
T ss_pred EEEEchHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcC
Confidence 34679999999999999999999999999999987765 889999999999999999999999999999999999999
Q ss_pred ceEEEEEEcCCe-EEEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 632 TKIHDIKINKEN-VLINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 632 ~~v~~i~~~~~~-~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
+.+++++.++++ ..+.++ +|. +++||.|++|+|+
T Consensus 83 ~~v~~i~~~~~g~~~v~~~--~g~------~i~~D~Vi~a~GR 117 (117)
T d1feca2 83 ENPAKVTKNADGTRHVVFE--SGA------EADYDVVMLAIGR 117 (117)
T ss_dssp CCEEEEEECTTSCEEEEET--TSC------EEEESEEEECSCE
T ss_pred CEEEEEEECCCCEEEEEEC--CCC------EEEcCEEEEecCC
Confidence 999999876554 345554 776 8999999999996
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.67 E-value=2.9e-16 Score=140.27 Aligned_cols=107 Identities=23% Similarity=0.391 Sum_probs=95.8
Q ss_pred eEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 556 LILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 556 ~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
.++++++++++.. +++++|||||++|+|+|..|+++|++||+++|.+++++.+|+++++.+++.|+++||++++++.++
T Consensus 9 ~~~ts~~~~~l~~-p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~~~~v~ 87 (117)
T d1onfa2 9 NTISSDEFFNIKE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVTFADVV 87 (117)
T ss_dssp GCEEHHHHTTCCC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred HcCchhHHhccCC-CCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEECCEEE
Confidence 5789999998877 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCC-eEEEEEeeCCCCccceeEEE-eccEEEEee
Q psy9583 636 DIKINKE-NVLINYSNKSTNVKTEIITS-IFDKLLIAI 671 (866)
Q Consensus 636 ~i~~~~~-~~~v~~~~~~g~~~~~~~~~-~~D~vi~a~ 671 (866)
+++..++ .+.+.+. +|+ .+ .+|.|++|+
T Consensus 88 ~i~~~~~~~~~v~~~--~G~------~~~~~D~Vi~AI 117 (117)
T d1onfa2 88 EIKKVSDKNLSIHLS--DGR------IYEHFDHVIYCV 117 (117)
T ss_dssp EEEESSTTCEEEEET--TSC------EEEEESEEEECC
T ss_pred EEEEcCCCeEEEEEC--CCC------EEEeCCEEEEeC
Confidence 9987654 4555554 675 44 579999985
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.66 E-value=2.9e-16 Score=140.30 Aligned_cols=111 Identities=28% Similarity=0.503 Sum_probs=96.7
Q ss_pred CceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCce
Q psy9583 554 ENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTK 633 (866)
Q Consensus 554 ~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~ 633 (866)
+..++++++++.+...|++++|||||++|+|+|..|+++|++||++++.+++++.+|+++++.+++.|+++||+++++++
T Consensus 5 g~~~~~s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~ 84 (115)
T d1lvla2 5 GGPVISSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHS 84 (115)
T ss_dssp BTTEECHHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCE
T ss_pred CCcEECChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcE
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeec
Q psy9583 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 634 v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G 672 (866)
|++++ ++....... ++. ..++++|.|++|+|
T Consensus 85 V~~i~--~~~~~~~~~--~~~----~~~i~~D~vi~A~G 115 (115)
T d1lvla2 85 VEGYE--NGCLLANDG--KGG----QLRLEADRVLVAVG 115 (115)
T ss_dssp EEEEE--TTEEEEECS--SSC----CCEECCSCEEECCC
T ss_pred EEEEc--CCeEEEEEc--CCC----eEEEEcCEEEEecC
Confidence 99986 233322222 222 24899999999998
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=1.3e-15 Score=137.21 Aligned_cols=113 Identities=21% Similarity=0.369 Sum_probs=97.2
Q ss_pred eEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 556 LILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 556 ~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
+.+|+++++++...|++++|||||++|+|+|..|+++|++||++++ +++++.+|+++++.+++.|+++||+|++++.++
T Consensus 6 ~~~tsd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~-~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~~~v~ 84 (122)
T d1h6va2 6 YCISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLRGFDQDMANKIGEHMEEHGIKFIRQFVPT 84 (122)
T ss_dssp HCBCHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSSSTTSCHHHHHHHHHHHHHTTEEEEESCEEE
T ss_pred eeEcchHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEe-chhhccCCHHHHHHHHHHHHHCCCEEEECCEEE
Confidence 5679999999999999999999999999999999999999999987 578999999999999999999999999999999
Q ss_pred EEEEcC----CeEEEEEeeCCCCccceeEEEeccEEEEeec
Q psy9583 636 DIKINK----ENVLINYSNKSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 636 ~i~~~~----~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G 672 (866)
+++..+ ..+.+.+...++. +...+++|.|++|+|
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 85 KIEQIEAGTPGRLKVTAKSTNSE---ETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEECSTTCEEEEEEECTTSC---EEEEEEESEEECCCC
T ss_pred EEEEecCCCccEEEEEEEECCCC---cEEEEECCEEEEEeC
Confidence 997642 2455655533322 234678999999998
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.62 E-value=2.1e-15 Score=134.98 Aligned_cols=108 Identities=19% Similarity=0.379 Sum_probs=97.0
Q ss_pred eEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCC---cEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCc
Q psy9583 556 LILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGS---EVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNT 632 (866)
Q Consensus 556 ~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~---~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~ 632 (866)
+++|+++++.+...|++++|||||++|+|+|..|.+++. +||++++++++++.+|+++++.+++.|+++||++++++
T Consensus 6 ~~~t~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~ 85 (117)
T d1aoga2 6 HCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKE 85 (117)
T ss_dssp GCBCHHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESC
T ss_pred ceEcHHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCC
Confidence 478999999999999999999999999999998887764 69999999999999999999999999999999999999
Q ss_pred eEEEEEEcCC-eEEEEEeeCCCCccceeEEEeccEEEEee
Q psy9583 633 KIHDIKINKE-NVLINYSNKSTNVKTEIITSIFDKLLIAI 671 (866)
Q Consensus 633 ~v~~i~~~~~-~~~v~~~~~~g~~~~~~~~~~~D~vi~a~ 671 (866)
++++++..++ .+.+.++ +|+ +++||.|++|+
T Consensus 86 ~v~~ie~~~~~~~~v~~~--~G~------~i~~D~Vi~AI 117 (117)
T d1aoga2 86 NPAKVELNADGSKSVTFE--SGK------KMDFDLVMMAI 117 (117)
T ss_dssp CEEEEEECTTSCEEEEET--TSC------EEEESEEEECS
T ss_pred EEEEEEEcCCCeEEEEEC--CCc------EEEeCEEEEeC
Confidence 9999987654 4666664 776 89999999985
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.62 E-value=1.9e-18 Score=176.17 Aligned_cols=167 Identities=17% Similarity=0.170 Sum_probs=102.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
...+|+||||||||++||..|+++|++|+|+|+. +.+||.|....++|....
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~------~~~GG~~~~~~~~~~~~~---------------------- 99 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTA------EKIGGHLNQVAALPGLGE---------------------- 99 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS------SSTTTTHHHHTTSTTCGG----------------------
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeec------cccCCccccccccceeec----------------------
Confidence 4589999999999999999999999999999998 789998865444432111
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSFP 548 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~p 548 (866)
+.....+... .+. .+...++.... .... +. +...+...+.||+||+|||+.+..++
T Consensus 100 -----~~~~~~~~~~-------~~~-~~~~~~~~~~~----~~~~-----~~--~~~~~~~~~~~d~vviAtG~~~~~~~ 155 (233)
T d1djqa3 100 -----WSYHRDYRET-------QIT-KLLKKNKESQL----ALGQ-----KP--MTADDVLQYGADKVIIATGASECTLW 155 (233)
T ss_dssp -----GGHHHHHHHH-------HHH-HHHTTCTTCEE----ECSC-----CC--CCHHHHHTSCCSEEEECCCEECCHHH
T ss_pred -----ccccchhHHH-------HHH-HHhhcceeeee----eccc-----cc--ccchhhhhhccceeeeccCCCccccc
Confidence 1111111000 011 11122222110 0000 11 11112245789999999999876432
Q ss_pred CCcCCCceEecch---hhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC
Q psy9583 549 GVKFDENLILSNK---GALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607 (866)
Q Consensus 549 ~~~~~~~~~~t~~---~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~ 607 (866)
..........+.. .........++++|+|+|++|+|+|..|++.|.+|++++|++.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~ 217 (233)
T d1djqa3 156 NELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW 217 (233)
T ss_dssp HHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred ccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence 1111111112111 1112223468999999999999999999999999999999988764
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.59 E-value=6.9e-15 Score=144.58 Aligned_cols=154 Identities=19% Similarity=0.301 Sum_probs=123.2
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC---------------------CcccHHHHHHHHHHHHHcCCEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL---------------------NTVDEEIAKKAFHLLNKQGLNI 628 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l---------------------~~~d~~~~~~l~~~l~~~GV~i 628 (866)
.++|+|||||++|+++|..+++.|.+|.++++..... ....+++...+.+++++.|+++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i 84 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI 84 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence 4789999999999999999999999999998654321 0125788888888889999999
Q ss_pred EeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc-----ccCCCCCCccccCeeecCCCcEEeCC-CCC
Q psy9583 629 ILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR-----IPNTNNLNIDKIGLKVNENNFIIVND-NCE 702 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~-----~p~~~~l~l~~~gl~~~~~G~i~Vd~-~l~ 702 (866)
..+ .|.++...++...+.. +. ....+|.+++++|. .|++.++ ..+++++++|+|.+|+ +++
T Consensus 85 ~~~-~V~~~~~~~~~~~v~~---~~------~~~~~~~~~~a~g~~~~g~~p~~~~~---~~~veld~~G~i~~~~~~~~ 151 (192)
T d1vdca1 85 FTE-TVTKVDFSSKPFKLFT---DS------KAILADAVILAIGAVAKGHEPATKFL---DGGVELDSDGYVVTKPGTTQ 151 (192)
T ss_dssp ECC-CCCEEECSSSSEEEEC---SS------EEEEEEEEEECCCEEECCEEESCGGG---TTSSCBCTTSCBCCCTTSCB
T ss_pred eee-eEEecccccCcEEecc---cc------eeeeeeeEEEEeeeeecccCchHHHh---cCceeecCCCeEEeCCCceE
Confidence 755 6777776665555433 22 27889999999985 5777663 3478999999999995 789
Q ss_pred CCCCCEEEecccCCCC-CcHHHHHHHHHHHHHHHh
Q psy9583 703 TNIPNIYAIGDVVRGP-MLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 703 Ts~~~VyA~GD~a~~~-~~~~~A~~~g~~aa~~i~ 736 (866)
|+.|+|||+|||.+.+ +....|..+|..||.++.
T Consensus 152 Ts~~GV~a~GDv~~~~~r~~v~A~g~G~~aA~~~~ 186 (192)
T d1vdca1 152 TSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAE 186 (192)
T ss_dssp CSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ecCCCEEEeeecCCcccceEEEEEechHHHHHHHH
Confidence 9999999999999765 578999999999998864
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.55 E-value=1.5e-14 Score=129.76 Aligned_cols=102 Identities=20% Similarity=0.330 Sum_probs=87.6
Q ss_pred cchhhhccc---cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 559 SNKGALEMI---NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 559 t~~~~~~~~---~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
+.+++..+. ..+++++|||||++|+|+|..|+++|.+||++++.+++++ .+|+++++.+.+.|+++||++++++.+
T Consensus 16 tl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~~~v 95 (121)
T d1d7ya2 16 TLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSV 95 (121)
T ss_dssp SHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEESCCE
T ss_pred CHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeCCEE
Confidence 444554443 3579999999999999999999999999999999999997 789999999999999999999999999
Q ss_pred EEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeec
Q psy9583 635 HDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 635 ~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G 672 (866)
+++... . +.+ .+|+ ++++|.|++|+|
T Consensus 96 ~~~~~~--~--v~l--~dg~------~i~~D~vi~a~G 121 (121)
T d1d7ya2 96 TGSVDG--V--VLL--DDGT------RIAADMVVVGIG 121 (121)
T ss_dssp EEEETT--E--EEE--TTSC------EEECSEEEECSC
T ss_pred EEEeCC--E--EEE--CCCC------EEECCEEEEeeC
Confidence 987632 2 344 3776 899999999998
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.54 E-value=4.6e-14 Score=127.24 Aligned_cols=115 Identities=13% Similarity=0.237 Sum_probs=93.9
Q ss_pred CCceEecchhhhcc-c-cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEe
Q psy9583 553 DENLILSNKGALEM-I-NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIIL 630 (866)
Q Consensus 553 ~~~~~~t~~~~~~~-~-~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~ 630 (866)
+...+++...+.+. . ..+++++|||||++|+|+|..|+++|.+|+++++.+++++.+|+++++.+++.|+++||++++
T Consensus 3 ~~~gv~~~~~~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~ 82 (121)
T d1mo9a2 3 NAKGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIIS 82 (121)
T ss_dssp TSBTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEES
T ss_pred CCCCEEeHHHHHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEc
Confidence 34556666655433 2 246999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEcCCeEE--EEEeeCCCCccceeEEEeccEEEEeec
Q psy9583 631 NTKIHDIKINKENVL--INYSNKSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 631 ~~~v~~i~~~~~~~~--v~~~~~~g~~~~~~~~~~~D~vi~a~G 672 (866)
++.+++++.++++.. +.....++ ..++++|.|++|+|
T Consensus 83 ~~~v~~i~~~~~~~~~~~~~~~~~~-----~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 83 GSNVTRIEEDANGRVQAVVAMTPNG-----EMRIETDFVFLGLG 121 (121)
T ss_dssp SCEEEEEEECTTSBEEEEEEEETTE-----EEEEECSCEEECCC
T ss_pred CCEEEEEEecCCceEEEEEEEeCCC-----CEEEEcCEEEEEEC
Confidence 999999998765422 22221122 34899999999998
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=1.1e-16 Score=153.67 Aligned_cols=133 Identities=20% Similarity=0.291 Sum_probs=90.9
Q ss_pred ccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
...++|+|||||||||+||..|+++|++|+|||+. +.+||.......+|.
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~------~~~GG~l~~~~~~p~------------------------ 90 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAH------SEIGGQFNIAKQIPG------------------------ 90 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS------SSSCTTHHHHTTSTT------------------------
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEecc------CccCceEEEEEeCcc------------------------
Confidence 34589999999999999999999999999999998 788986432211221
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
..++..++.+ +...+++.+|++++++.+..+ ....||++|+|||+.|+.+
T Consensus 91 ---~~~~~~~~~~-----------~~~~~~~~gV~i~l~~~Vt~~----------------~~~~~d~vilAtG~~~~~~ 140 (179)
T d1ps9a3 91 ---KEEFYETLRY-----------YRRMIEVTGVTLKLNHTVTAD----------------QLQAFDETILASGIPNRAL 140 (179)
T ss_dssp ---CTTHHHHHHH-----------HHHHHHHHTCEEEESCCCCSS----------------SSCCSSEEEECCCEECCTT
T ss_pred ---cchHHHHHHH-----------HHHhhhcCCeEEEeCCEEccc----------------ccccceeEEEeecCCCccc
Confidence 1122222222 345567779999887654321 1246899999999987654
Q ss_pred CCCcCCCceEecchhhhccccCCCeEEEECCcHHHHHH-HHHHHhcCCc
Q psy9583 548 PGVKFDENLILSNKGALEMINVPKKLCIIGAGVIGLEI-GSIWRRLGSE 595 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~-A~~l~~~g~~ 595 (866)
+.++ ...+++++|+|+|.+++++ +......|.+
T Consensus 141 ~~pg---------------~~~g~~v~vigggd~a~~~~~~~Av~~G~~ 174 (179)
T d1ps9a3 141 AQPL---------------IDSGKTVHLIGGCDVAMELDARRAIAQGTR 174 (179)
T ss_dssp HHHH---------------HTTTCCEEECGGGTCCSSCCHHHHHHHHHH
T ss_pred ccch---------------hccCCEEEEECCcHhhhhccchhhhhccCE
Confidence 3221 2247899999999998886 4444444443
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=99.53 E-value=9.2e-15 Score=118.49 Aligned_cols=60 Identities=27% Similarity=0.407 Sum_probs=59.2
Q ss_pred EEEEEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEE
Q psy9583 18 ATLLNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALI 77 (866)
Q Consensus 18 g~i~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~ 77 (866)
|+|.+|+|++||.|++||+|+.+|+||+.++|+||.+|+|.++++++|+.|..|++|+.|
T Consensus 17 G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~V~~G~~L~~i 76 (77)
T d1dcza_ 17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76 (77)
T ss_dssp CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTSEEEEE
T ss_pred cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCEECCCCEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999987
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=9.6e-14 Score=135.99 Aligned_cols=156 Identities=22% Similarity=0.277 Sum_probs=118.8
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC----------------CcccHHHHHHHHHHHHHcCCEEEeCce
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL----------------NTVDEEIAKKAFHLLNKQGLNIILNTK 633 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l----------------~~~d~~~~~~l~~~l~~~GV~i~~~~~ 633 (866)
.++|+|||||++|++.|..+++.|.+|+++++.+... .....++.+.+..++.+.++++..+ .
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-H 83 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-C
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-e
Confidence 4689999999999999999999999999998764311 1235677888888899999998754 6
Q ss_pred EEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCC--ccccCeeecCCCcEEeCC-----CCCCCCC
Q psy9583 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN--IDKIGLKVNENNFIIVND-----NCETNIP 706 (866)
Q Consensus 634 v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~--l~~~gl~~~~~G~i~Vd~-----~l~Ts~~ 706 (866)
|+.+...++...+... . . .+.++.+++++|..|...... +-...++++ +|+|.+|. .++|++|
T Consensus 84 V~~~~~~~~~~~v~~~--~-~------~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~-~g~i~~~~~~~~~~~~T~v~ 153 (190)
T d1trba1 84 INKVDLQNRPFRLNGD--N-G------EYTCDALIIATGASARYHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIP 153 (190)
T ss_dssp EEEEECSSSSEEEEES--S-C------EEEEEEEEECCCEEECCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSST
T ss_pred eEEEecCCCcEEEEEe--e-e------eEeeeeeeeecceeeeeecccceeecceEecC-CcEEEEecCCcccccccccC
Confidence 8888776665555432 2 2 789999999999776432110 112235665 68899994 5589999
Q ss_pred CEEEecccCCCC-CcHHHHHHHHHHHHHHHh
Q psy9583 707 NIYAIGDVVRGP-MLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 707 ~VyA~GD~a~~~-~~~~~A~~~g~~aa~~i~ 736 (866)
+|||+|||++.+ +.+..|..+|..||.++.
T Consensus 154 gV~aaGDv~~~~~~q~i~Aag~G~~AA~~a~ 184 (190)
T d1trba1 154 GVFAAGDVMDHIYRQAITSAGTGCMAALDAE 184 (190)
T ss_dssp TEEECGGGGCSSSCCHHHHHHHHHHHHHHHH
T ss_pred eEEEeEEecCcceeEEEEEeccHHHHHHHHH
Confidence 999999999754 688999999999997763
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.50 E-value=1.8e-14 Score=129.81 Aligned_cols=114 Identities=23% Similarity=0.323 Sum_probs=91.8
Q ss_pred CcCCCCCcCCCceEecchhhhccc------cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHH
Q psy9583 544 ARSFPGVKFDENLILSNKGALEMI------NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKA 617 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t~~~~~~~~------~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l 617 (866)
|+.|+.++. .++++.+++.+.. ..+++++|||||++|+|+|..|+++|++||++++.+++++ +|+++++.+
T Consensus 2 ~r~p~ipG~--e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~-~d~~~~~~~ 78 (122)
T d1xhca2 2 AREPQIKGK--EYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMI 78 (122)
T ss_dssp ECCCCSBTG--GGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHH
T ss_pred CCCcCCCCc--cceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC-CCHHHHHHH
Confidence 555555543 3456554443332 2468999999999999999999999999999999999885 899999999
Q ss_pred HHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 618 FHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 618 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
.+.|+++||++++++.+++++.+ ++ +. ++. .+++|.|++|+|.
T Consensus 79 ~~~l~~~GV~~~~~~~v~~~~~~--~v---~~--~~~------~i~~D~vi~a~Gv 121 (122)
T d1xhca2 79 KDMLEETGVKFFLNSELLEANEE--GV---LT--NSG------FIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHHTTEEEECSCCEEEECSS--EE---EE--TTE------EEECSCEEEECCE
T ss_pred HHHHHHCCcEEEeCCEEEEEeCC--EE---Ee--CCC------EEECCEEEEEEEe
Confidence 99999999999999999988643 22 22 444 8999999999995
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.50 E-value=5.8e-14 Score=136.39 Aligned_cols=156 Identities=17% Similarity=0.250 Sum_probs=108.3
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCC--cEEEEecCCcCCCcccHHHHH----------HHHHHHHHcCCEEEeCceEEEE
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGS--EVTILEMSSNFLNTVDEEIAK----------KAFHLLNKQGLNIILNTKIHDI 637 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~--~Vtli~~~~~~l~~~d~~~~~----------~l~~~l~~~GV~i~~~~~v~~i 637 (866)
+|||+|||||++|+|+|..|.+.+. +|+++++.+.+.......... .....+...++.++.+..+ .+
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHDSAT-GI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECCCEE-EC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeeeeeE-ee
Confidence 6899999999999999999999874 799999988765432211111 1123445567777654333 33
Q ss_pred EEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCcccc------CeeecCCCcEEeCCC-C-CCCCCCEE
Q psy9583 638 KINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKI------GLKVNENNFIIVNDN-C-ETNIPNIY 709 (866)
Q Consensus 638 ~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~------gl~~~~~G~i~Vd~~-l-~Ts~~~Vy 709 (866)
.... ..+.+ .+++ ++++|.+++|+|.+|+...+..... ++..+ ++++.++.. + .++.++||
T Consensus 81 ~~~~--~~~~~--~~~~------~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~ 149 (186)
T d1fcda1 81 DPDK--KLVKT--AGGA------EFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTND-AGWCPVDIKTFESSIHKGIH 149 (186)
T ss_dssp CTTT--TEEEE--TTSC------EEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCT-TSSEEBCSSSCBBSSSTTEE
T ss_pred eecc--ceeec--ccce------eeccceEEEEeccccchhhhhhhhhhheeccCcccc-cccccceeeeeecccccCce
Confidence 2222 12223 3555 8999999999999999987532221 33444 455655543 4 47899999
Q ss_pred EecccCCC---CCcHHHHHHHHHHHHHHHhC
Q psy9583 710 AIGDVVRG---PMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 710 A~GD~a~~---~~~~~~A~~~g~~aa~~i~g 737 (866)
++||++.. |..++.|.+||+++|+||..
T Consensus 150 ~iGd~~~~~~~p~~~~~A~~q~~~~A~ni~~ 180 (186)
T d1fcda1 150 VIGDASIANPMPKSGYSANSQGKVAAAAVVV 180 (186)
T ss_dssp ECTTSEECTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred EeccccccCCCCchHhHHHHHHHHHHHHHHH
Confidence 99999864 56799999999999999964
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.48 E-value=1.3e-13 Score=124.10 Aligned_cols=94 Identities=18% Similarity=0.317 Sum_probs=83.3
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLIN 647 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~ 647 (866)
.+++++|||||++|+|+|..|+++|.+||++++.+++++ .+|+++.+.+++.|+++||++++++.+++++.++ .+...
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-~~~~v 107 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDG-RVQKV 107 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSS-BCCEE
T ss_pred CCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCC-CEEEE
Confidence 478999999999999999999999999999999999987 5799999999999999999999999999998764 33333
Q ss_pred EeeCCCCccceeEEEeccEEEEee
Q psy9583 648 YSNKSTNVKTEIITSIFDKLLIAI 671 (866)
Q Consensus 648 ~~~~~g~~~~~~~~~~~D~vi~a~ 671 (866)
+. +|. +++||.|++|+
T Consensus 108 ~~--dg~------~i~~D~vi~aI 123 (123)
T d1nhpa2 108 VT--DKN------AYDADLVVVAV 123 (123)
T ss_dssp EE--SSC------EEECSEEEECS
T ss_pred Ee--CCC------EEECCEEEEEC
Confidence 43 665 89999999984
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.47 E-value=1.5e-13 Score=125.55 Aligned_cols=108 Identities=19% Similarity=0.309 Sum_probs=89.8
Q ss_pred cchhhhcc---ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-cccHHHHHHHHHHHHHcCCEEEeCceE
Q psy9583 559 SNKGALEM---INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIILNTKI 634 (866)
Q Consensus 559 t~~~~~~~---~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~GV~i~~~~~v 634 (866)
+.++...+ ...+++++|||||++|+|+|..|++.|.+|+++++.+++++ .+++++.+.+++.++++||++++++.+
T Consensus 21 ~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~~~v 100 (133)
T d1q1ra2 21 TLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQV 100 (133)
T ss_dssp SHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCE
T ss_pred CHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeCCeE
Confidence 44444443 34589999999999999999999999999999999999997 579999999999999999999999999
Q ss_pred EEEEEcCCeE-EEEEeeCCCCccceeEEEeccEEEEeec
Q psy9583 635 HDIKINKENV-LINYSNKSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 635 ~~i~~~~~~~-~v~~~~~~g~~~~~~~~~~~D~vi~a~G 672 (866)
++++...+.. ...+...+|+ ++++|.|++|+|
T Consensus 101 ~~i~~~~~~~~v~~v~~~~G~------~i~~D~vi~a~G 133 (133)
T d1q1ra2 101 CGFEMSTDQQKVTAVLCEDGT------RLPADLVIAGIG 133 (133)
T ss_dssp EEEEECTTTCCEEEEEETTSC------EEECSEEEECCC
T ss_pred EEEEEeCCCceEEEEECCCCC------EEECCEEEEeeC
Confidence 9998764321 1123334776 899999999998
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.47 E-value=6.7e-14 Score=132.34 Aligned_cols=145 Identities=12% Similarity=0.058 Sum_probs=115.5
Q ss_pred ecCCCCcC---CCCCcCCCceEecchhhhccccCCCeEEEE---CCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHH
Q psy9583 539 ATGSKARS---FPGVKFDENLILSNKGALEMINVPKKLCII---GAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEE 612 (866)
Q Consensus 539 ATGs~p~~---~p~~~~~~~~~~t~~~~~~~~~~~~~vvVI---GgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~ 612 (866)
|||+.|.. +|+.+.++.+++|+++++.....+++.+|| |||++|+|+|..|+++|++||++++.+.+++.++++
T Consensus 4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~~~ 83 (156)
T d1djqa2 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHFTL 83 (156)
T ss_dssp SSCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHHTT
T ss_pred CCCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccchh
Confidence 79998874 366655667899999999888766555555 999999999999999999999999999999888999
Q ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCC
Q psy9583 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNEN 692 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~ 692 (866)
....+.+.|+++||++++++.+.+++.+ .+.+... . ....+.++.++|..|+... .+..++++|
T Consensus 84 ~~~~~~~~l~~~GV~i~~~~~v~~i~~~--~v~l~~~--~--------~~~~~~v~~~~g~~~~~~~--~~~~~le~D-- 147 (156)
T d1djqa2 84 EYPNMMRRLHELHVEELGDHFCSRIEPG--RMEIYNI--W--------GDGSKRTYRGPGVSPRDAN--TSHRWIEFD-- 147 (156)
T ss_dssp CHHHHHHHHHHTTCEEEETEEEEEEETT--EEEEEET--T--------CSCSCCCCCCTTSCSSCCC--CCCEEEECS--
T ss_pred HHHHHHHHHhhccceEEeccEEEEecCc--ceEEEee--e--------ccccceeeeeeEEEecccC--CccCcEecc--
Confidence 9999999999999999999999999854 3333322 1 2345778888899998887 566677765
Q ss_pred CcEEeCC
Q psy9583 693 NFIIVND 699 (866)
Q Consensus 693 G~i~Vd~ 699 (866)
+.+.++.
T Consensus 148 ~vilvtg 154 (156)
T d1djqa2 148 SLVLVTG 154 (156)
T ss_dssp EEEEESC
T ss_pred eEEEEec
Confidence 3355554
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.5e-13 Score=126.45 Aligned_cols=107 Identities=19% Similarity=0.317 Sum_probs=93.6
Q ss_pred cchhhhccc---cCCCeEEEECCcHHHHHHHHHHH----hcCCcEEEEecCCcCCC-cccHHHHHHHHHHHHHcCCEEEe
Q psy9583 559 SNKGALEMI---NVPKKLCIIGAGVIGLEIGSIWR----RLGSEVTILEMSSNFLN-TVDEEIAKKAFHLLNKQGLNIIL 630 (866)
Q Consensus 559 t~~~~~~~~---~~~~~vvVIGgG~~glE~A~~l~----~~g~~Vtli~~~~~~l~-~~d~~~~~~l~~~l~~~GV~i~~ 630 (866)
+.+++.++. ..+++++|||||++|+|+|..|+ ..|.+|+++++.+++++ .+|+++++.+.+.|+++||++++
T Consensus 23 ~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~ 102 (137)
T d1m6ia2 23 KIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMP 102 (137)
T ss_dssp SHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEEC
T ss_pred CHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEe
Confidence 555555443 34789999999999999999996 46899999999999997 58999999999999999999999
Q ss_pred CceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 631 NTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 631 ~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
++.|++++.+++.+.+.+. +|+ ++++|.|++|+|.
T Consensus 103 ~~~V~~i~~~~~~~~v~l~--~G~------~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 103 NAIVQSVGVSSGKLLIKLK--DGR------KVETDHIVAAVGL 137 (137)
T ss_dssp SCCEEEEEEETTEEEEEET--TSC------EEEESEEEECCCE
T ss_pred CCEEEEEEecCCEEEEEEC--CCC------EEECCEEEEeecC
Confidence 9999999998888877775 776 8999999999994
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.6e-12 Score=126.20 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=121.0
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc--C------------CCcccHHHHHHHHHHHHHcCCEEEeCceEEEE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN--F------------LNTVDEEIAKKAFHLLNKQGLNIILNTKIHDI 637 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~--~------------l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i 637 (866)
.|+|||||++|+++|..+.++|.+|++++++.. + .....+.+...+....++.++++.....+..+
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL 82 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence 589999999999999999999999999987421 1 11224777788888888889999988888877
Q ss_pred EEcCCe--EEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccC
Q psy9583 638 KINKEN--VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715 (866)
Q Consensus 638 ~~~~~~--~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a 715 (866)
...... ...... .+.. .+.++.++.++|..++... ....++.....|.|.||+.++|+.|+||++|||.
T Consensus 83 ~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~ 153 (184)
T d1fl2a1 83 IPAAVEGGLHQIET-ASGA------VLKARSIIVATGAKLPNTN--WLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCT 153 (184)
T ss_dssp ECCSSTTCCEEEEE-TTSC------EEEEEEEEECCCEEEESCG--GGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTB
T ss_pred cccccccceeeeee-ecce------eeecccccccccccccccc--cccccccccccceeccCCceeeeCCCEEEEeeec
Confidence 654321 111111 2333 7899999999998776665 3455677777899999999999999999999999
Q ss_pred CCC-CcHHHHHHHHHHHHHHHh
Q psy9583 716 RGP-MLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 716 ~~~-~~~~~A~~~g~~aa~~i~ 736 (866)
+.+ +....|..+|..||.++.
T Consensus 154 ~~~~~~~vva~g~G~~aA~~~~ 175 (184)
T d1fl2a1 154 TVPYKQIIIATGEGAKASLSAF 175 (184)
T ss_dssp SCSSCCHHHHHHHHHHHHHHHH
T ss_pred CcccCCcEEEEECcHHHHHHHH
Confidence 765 568889999988887764
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=7.8e-13 Score=107.07 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=55.9
Q ss_pred EEEEeCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEe
Q psy9583 21 LNWHKKEGELVVRNENLIDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALID 78 (866)
Q Consensus 21 ~~w~~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~ 78 (866)
.+++|++||.|++||+|+.||+||+.++|+||.+|+|.++++++|+.|..|++|+.++
T Consensus 23 ~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~V~~G~~L~~ie 80 (80)
T d1bdoa_ 23 AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCEECCCCEEEEEC
Confidence 3688999999999999999999999999999999999999999999999999999885
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.34 E-value=5.1e-12 Score=129.16 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeeccccCCCC-------CCccc
Q psy9583 613 IAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN-------LNIDK 684 (866)
Q Consensus 613 ~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~-------l~l~~ 684 (866)
+.+.+.+.+++.||+++++++|+++..+++.+. +.+ .+++ .+.+|.||+|+|....... ..++.
T Consensus 112 i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~--~~g~------~i~a~~vI~AtGg~S~p~~Gs~g~g~~~a~~ 183 (251)
T d2i0za1 112 VVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVIL--QTGE------VLETNHVVIAVGGKSVPQTGSTGDGYAWAEK 183 (251)
T ss_dssp HHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE--TTCC------EEECSCEEECCCCSSSGGGSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEe--CCCC------eEecCeEEEccCCccccccCCCcccchhccc
Confidence 455677888899999999999999998777654 433 3665 8999999999996543221 00233
Q ss_pred cCeeecCC--Cc-----EEeCCCCCCCCCCEEEecccCCCC-----CcHHHHHHHHHHHHHHHh
Q psy9583 685 IGLKVNEN--NF-----IIVNDNCETNIPNIYAIGDVVRGP-----MLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 685 ~gl~~~~~--G~-----i~Vd~~l~Ts~~~VyA~GD~a~~~-----~~~~~A~~~g~~aa~~i~ 736 (866)
.+.++.+- +. ...++...+..|++|++|++.... .....|+..|++|+..+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~~~G~~a~~~~~ 247 (251)
T d2i0za1 184 AGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSALVTGRIAGTTAG 247 (251)
T ss_dssp TTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHHHHHHHHHHHHH
Confidence 34433211 11 111222235789999999987321 245788999999998874
|
| >d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.34 E-value=1.4e-13 Score=94.63 Aligned_cols=40 Identities=40% Similarity=0.748 Sum_probs=37.8
Q ss_pred cccchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhh
Q psy9583 101 TIVMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLS 141 (866)
Q Consensus 101 ~~~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~ 141 (866)
+.+||+||+||+|+|||+++| +|||++|||+++||++|++
T Consensus 2 v~asP~arkla~e~gidl~~i-~GTG~~GRItk~DV~~~i~ 41 (42)
T d1w85i_ 2 VIAMPSVRKYAREKGVDIRLV-QGTGKNGRVLKEDIDAFLA 41 (42)
T ss_dssp CCCCHHHHHHHHHTTCCTTTS-CCCSGGGCCCHHHHHHHHC
T ss_pred cccCHHHHHHHHHcCCCHHHC-ccCCCCCcEeHHHHHHHhC
Confidence 568999999999999999999 8999999999999999974
|
| >d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex domain: E3-binding domain of dihydrolipoamide succinyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=2.8e-13 Score=91.80 Aligned_cols=38 Identities=42% Similarity=0.766 Sum_probs=36.1
Q ss_pred cchhHHHhhhhCCCCcccccCCCCCCCceeehhHHhhhh
Q psy9583 103 VMPSAKKILSDNNLEISKINNGTGKDGRIIKEDVLKVLS 141 (866)
Q Consensus 103 ~~p~~r~~a~~~~~d~~~v~~gtg~~g~i~~~Dv~~~~~ 141 (866)
.||+||+||+|+|||++.| +|||++|||+++||++|++
T Consensus 1 iSP~arkla~e~gidl~~i-~GtG~~GRI~k~Dv~~~i~ 38 (39)
T d2cyua1 1 LSPAIRRLLAEHNLDASAI-KGTGVGGRLTREDVEKHLA 38 (39)
T ss_dssp CCCTHHHHHHHHTCCGGGS-CCCSSSSCCCHHHHHHHSC
T ss_pred CCHHHHHHHHHcCCCHHHC-cCCCCCCcEeHHHHHHHHc
Confidence 4899999999999999999 8999999999999999974
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.23 E-value=6.8e-12 Score=128.52 Aligned_cols=154 Identities=21% Similarity=0.235 Sum_probs=81.1
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCccccc--CCCcccee--ccccchhHHH---------hhHHH
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFA--LGGTCTNV--GCIPSKALLQ---------TSHSF 453 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~--~GG~~~~~--g~~P~~~~~~---------~~~~~ 453 (866)
|++.+||+|||||+||++||+.|++.|++|+||||.+.+...-. -||.|... ...|...... .....
T Consensus 1 M~~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (253)
T d2gqfa1 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTN 80 (253)
T ss_dssp CEEECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCH
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcc
Confidence 67789999999999999999999999999999999843211111 12444211 1111111000 00011
Q ss_pred HHHhhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcc-cEEEEEcCCceEE
Q psy9583 454 ENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNF-HEIQIINKTKETI 531 (866)
Q Consensus 454 ~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~-~~v~v~~~~g~~i 531 (866)
......+..++.......... ++. ......+.+.+...+++.||++++++.+. +...+... ..+.+.+ ++.++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~--~~~--~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~-~~~~~ 155 (253)
T d2gqfa1 81 WDFISLVAEQGITYHEKELGQ--LFC--DEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQV-NSTQW 155 (253)
T ss_dssp HHHHHHHHHTTCCEEECSTTE--EEE--TTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEE-TTEEE
T ss_pred cchhhhhhhcCcceeeecCCc--ccc--ccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEec-CCEEE
Confidence 111222333333221100000 000 00001122234555677899999988766 32211111 1233433 45789
Q ss_pred EecEEEEecCCCCc
Q psy9583 532 TAKYIIIATGSKAR 545 (866)
Q Consensus 532 ~~d~lViATGs~p~ 545 (866)
++|+||+|||+.+.
T Consensus 156 ~a~~VIiAtGG~S~ 169 (253)
T d2gqfa1 156 QCKNLIVATGGLSM 169 (253)
T ss_dssp EESEEEECCCCSSC
T ss_pred EeCEEEEcCCcccc
Confidence 99999999997653
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.22 E-value=7.7e-11 Score=125.13 Aligned_cols=121 Identities=19% Similarity=0.285 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-eEE-EEEeeCCCCccceeEEEeccEEEEeeccccC-CC---------
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKE-NVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIPN-TN--------- 678 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~-~~--------- 678 (866)
..+...+.+.+.+.|++++++++++++..+++ .+. +.+...++. ...+.++.||+|+|--.. .+
T Consensus 152 ~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~----~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~ 227 (322)
T d1d4ca2 152 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTG----YYVIKADAVVIAAGGFAKNNERVSKYDPKL 227 (322)
T ss_dssp HHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTE----EEEEECSEEEECCCCCTTCHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeeccc----EEEEeCCeEEEcCCCcccCHHHHHhhCccc
Confidence 34556667778889999999999999887544 322 333333332 457999999999982211 10
Q ss_pred -C------------------------CCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCCC----CCcH----HHHH
Q psy9583 679 -N------------------------LNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG----PMLA----HKAE 725 (866)
Q Consensus 679 -~------------------------l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~----~~~~----~~A~ 725 (866)
. ..++..++.++..+.+ +++..+|.+|++||+|+|+++ .++. ..+.
T Consensus 228 ~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~~~~~~~~~-~~~~~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~ 306 (322)
T d1d4ca2 228 KGFKATNHPGATGDGLDVALQAGAATRDLEMGGLVIDTKAEV-KSEKTGKPITGLYAAGEVTGGVHGANRLGGNAISDIV 306 (322)
T ss_dssp TTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEECCCTTCEE-EBTTTSSEEEEEEECGGGBCSSSTTSCCTTHHHHHHH
T ss_pred ccccccCCCCccCHHHHHHHHcCCcceecccceEEecCceEE-EECCCCCEeCceEEchhhcCCccccccchhhHHHHHH
Confidence 0 0112223344434433 445556889999999999853 2344 4444
Q ss_pred HHHHHHHHHHh
Q psy9583 726 EEGIMVAEHIS 736 (866)
Q Consensus 726 ~~g~~aa~~i~ 736 (866)
--|++|+++++
T Consensus 307 v~g~~ag~~aa 317 (322)
T d1d4ca2 307 TYGRIAGASAA 317 (322)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55888888765
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.14 E-value=2.9e-11 Score=129.22 Aligned_cols=115 Identities=16% Similarity=0.175 Sum_probs=72.7
Q ss_pred HHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC-----CCcccc-Cee-e
Q psy9583 617 AFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN-----LNIDKI-GLK-V 689 (866)
Q Consensus 617 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~-----l~l~~~-gl~-~ 689 (866)
....+++.|++++++++|++|..+++++.+.+...++. ..+++||.||+|++...-... |..... .+. +
T Consensus 241 ~~~l~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~~~~~----~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~ 316 (370)
T d2iida1 241 PTAMYRDIQDKVHFNAQVIKIQQNDQKVTVVYETLSKE----TPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSV 316 (370)
T ss_dssp HHHHHHHTGGGEESSCEEEEEEECSSCEEEEEECSSSC----CCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHC
T ss_pred HHHHHHhcCCccccCceEEEEEEeCCeEEEEEEecCCC----eEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhc
Confidence 33445678999999999999999988888877643333 348999999999864321110 000000 000 0
Q ss_pred c-CCCcEEeCCCCCCCCCCEEEecccCCCCC-cHHHHHHHHHHHHHHH
Q psy9583 690 N-ENNFIIVNDNCETNIPNIYAIGDVVRGPM-LAHKAEEEGIMVAEHI 735 (866)
Q Consensus 690 ~-~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~-~~~~A~~~g~~aa~~i 735 (866)
. +..+...+..+.+...+||++||++..+. ....|+.+|..||.+|
T Consensus 317 ~~~~~~~~~~~~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i 364 (370)
T d2iida1 317 FTPYQFQHFSDPLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDV 364 (370)
T ss_dssp CCTTHHHHHHHHHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHH
T ss_pred CCcccccccchhhhcccCCEEEecccccCCCcccHHHHHHHHHHHHHH
Confidence 0 00011112233345567999999887654 4678999999999987
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=99.13 E-value=1.6e-09 Score=115.32 Aligned_cols=122 Identities=14% Similarity=0.093 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-EEEe-eCCCCccceeEEEeccEEEEeeccccCCCCC--------
Q psy9583 611 EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-INYS-NKSTNVKTEIITSIFDKLLIAIGRIPNTNNL-------- 680 (866)
Q Consensus 611 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v~~~-~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l-------- 680 (866)
..+...+.+..++.|++++.++.+.++..+++.+. +.+. ..+|+ ...+.++.||+|||--......
T Consensus 158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~----~~~i~Ak~VvlATGG~~~~~~~t~~~~~~t 233 (336)
T d2bs2a2 158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGD----IIAYVAKGTLIATGGYGRIYKNTTNAVVCE 233 (336)
T ss_dssp HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCC----EEEEECSEEEECCCCCGGGSSSBSSCTTCS
T ss_pred HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCc----EEEEecCeEEEecccccccccccccccccc
Confidence 44566677778888999999999998887777654 3332 23554 5678999999999743211100
Q ss_pred -----CccccC-eeecCCCcEEeCCCCCCCCCCEEEecccCCC-----CC----cHHHHHHHHHHHHHHHh
Q psy9583 681 -----NIDKIG-LKVNENNFIIVNDNCETNIPNIYAIGDVVRG-----PM----LAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 681 -----~l~~~g-l~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~-----~~----~~~~A~~~g~~aa~~i~ 736 (866)
.....| .++.+-++|.+|..++|+.|++|++||++.. .+ +...+...+..+++++.
T Consensus 234 Gdg~~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~ 304 (336)
T d2bs2a2 234 GTGTAIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFA 304 (336)
T ss_dssp CHHHHHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhccccceeechhhcccCCcceeccccccccccccccchhhccchhhhhcchhHHHHH
Confidence 011223 3455578899999999999999999998641 12 34455566666666654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.12 E-value=8.1e-12 Score=131.48 Aligned_cols=115 Identities=9% Similarity=0.082 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCe------
Q psy9583 614 AKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGL------ 687 (866)
Q Consensus 614 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl------ 687 (866)
...+.+..++.|++|+++++|++|+.+++++.+.+... +. ..+++||.||+|+|......+| ....-
T Consensus 222 ~~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~~v~~~~~-~~----~~~~~ad~VV~a~p~~~~~~Ll--~~~~~~~~~~~ 294 (347)
T d2ivda1 222 QVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEH-GR----RAELSVAQVVLAAPAHATAKLL--RPLDDALAALV 294 (347)
T ss_dssp HHHHHHHHHHHGGGEESSEEEEEEECC--CCEEEEEET-TE----EEEEECSEEEECSCHHHHHHHH--TTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcccccCCEEEEEEEeCCeEEEEEEcC-Ce----EEEEECCEEEECCCHHHHHHhc--cCCCHHHHHHh
Confidence 33444445566899999999999998887777776643 22 3578999999999854222221 11100
Q ss_pred -eecCCCc---EEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHh
Q psy9583 688 -KVNENNF---IIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 688 -~~~~~G~---i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~ 736 (866)
.+...|. +...+...++.|++|++||...+.. ...|+.+|+.+|+.|+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~~~~g~~-~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 295 AGIYNLGHLERVAAIDAALQRLPGLHLIGNAYKGVG-LNDCIRNAAQLADALV 346 (347)
T ss_dssp HTCCBTTHHHHHHHHHHHHHTSTTEEECSTTTSCCS-HHHHHHHHHHHHHHHC
T ss_pred hcceecCcccceecccccccCCCCEEEecccccCCC-HHHHHHHHHHHHHHhh
Confidence 0111221 1111223468899999999987654 6668999999999885
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.10 E-value=1.7e-10 Score=121.39 Aligned_cols=109 Identities=15% Similarity=0.130 Sum_probs=68.8
Q ss_pred CCEEEeCceEEEEEEcCCe------EEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCC------CccccCe----e
Q psy9583 625 GLNIILNTKIHDIKINKEN------VLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL------NIDKIGL----K 688 (866)
Q Consensus 625 GV~i~~~~~v~~i~~~~~~------~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l------~l~~~gl----~ 688 (866)
+.++++++.|++|....+. ..+....... .+...+++|.||+|++...-..+. .+....+ .
T Consensus 243 ~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~ 319 (373)
T d1seza1 243 EDELRLNSRVLELSCSCTEDSAIDSWSIISASPHK---RQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYG 319 (373)
T ss_dssp TTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSS---SCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCC
T ss_pred cceEecCCEEEEEEEeCCcccccccceEEecccCC---CCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccc
Confidence 6789999999999875432 2233322111 123478999999998743211110 0000000 0
Q ss_pred ecCCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 689 VNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 689 ~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
.+.++.+.+++.++|+.||||++||+.+++ ....|+.+|+.||+.|+.
T Consensus 320 ~~~~~~~~~~~~~~t~~pglf~aGd~~~g~-~~~~A~~~G~~aA~~i~~ 367 (373)
T d1seza1 320 HNYDSVLDAIDKMEKNLPGLFYAGNHRGGL-SVGKALSSGCNAADLVIS 367 (373)
T ss_dssp TTHHHHHHHHHHHHHHSTTEEECCSSSSCS-SHHHHHHHHHHHHHHHHH
T ss_pred cCCCcEeecccccCCCCCCEEEEecCCCch-hHHHHHHHHHHHHHHHHH
Confidence 011223445567889999999999999765 688999999999999874
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.04 E-value=7.2e-10 Score=117.15 Aligned_cols=36 Identities=28% Similarity=0.476 Sum_probs=33.7
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.++.+||||||+|+||++||++|++.|.+|+||||.
T Consensus 16 ~~e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~ 51 (317)
T d1qo8a2 16 PSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKA 51 (317)
T ss_dssp CSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 345699999999999999999999999999999998
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=99.04 E-value=2.1e-09 Score=113.01 Aligned_cols=34 Identities=32% Similarity=0.560 Sum_probs=32.6
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..|||+|||||++|++||++|++.|++|+||||.
T Consensus 15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~ 48 (308)
T d1y0pa2 15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKE 48 (308)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 3699999999999999999999999999999998
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.04 E-value=6.9e-11 Score=123.41 Aligned_cols=129 Identities=23% Similarity=0.302 Sum_probs=80.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcccee---cc---ccchhHHHhhHHHHHHhhhhhhc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV---GC---IPSKALLQTSHSFENVKNSFFEY 463 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~---g~---~P~~~~~~~~~~~~~~~~~~~~~ 463 (866)
.+||+|||||++||++|.+|++.|.+|+|||+. +.+||+|... |+ .|+......... .. +...
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~------~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~-~~----~~~~ 75 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETA------GDVGGVWYWNRYPGARCDIESIEYCYSFSE-EV----LQEW 75 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCTHHHHCCCTTCBCSSCTTTSSCCSCH-HH----HHHC
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcC------CCcccccccCCCCCceeccccccccccccc-cc----cCCC
Confidence 589999999999999999999999999999998 7899998432 21 121111110000 00 0000
Q ss_pred CccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCc--EEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecC
Q psy9583 464 GINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKI--KFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATG 541 (866)
Q Consensus 464 gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATG 541 (866)
... ........+.. .+..+.++.++ ++.+++.|..-..+.....+.|.+.++.++++|+||+|||
T Consensus 76 ~~~--~~~p~~~e~~~-----------Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG 142 (298)
T d1w4xa1 76 NWT--ERYASQPEILR-----------YINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASG 142 (298)
T ss_dssp CCC--BSSCBHHHHHH-----------HHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCC
T ss_pred CCc--cccCccchHHH-----------HHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeec
Confidence 110 01111222222 24556666776 4777766652222334467788777788999999999999
Q ss_pred C
Q psy9583 542 S 542 (866)
Q Consensus 542 s 542 (866)
.
T Consensus 143 ~ 143 (298)
T d1w4xa1 143 Q 143 (298)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=7.8e-10 Score=104.46 Aligned_cols=121 Identities=20% Similarity=0.266 Sum_probs=92.4
Q ss_pred CcCCCCCcCCCceEecchhhhc-cccCCCeEEEECCcHHHHHHHHHHHhcCCc---------------------------
Q psy9583 544 ARSFPGVKFDENLILSNKGALE-MINVPKKLCIIGAGVIGLEIGSIWRRLGSE--------------------------- 595 (866)
Q Consensus 544 p~~~p~~~~~~~~~~t~~~~~~-~~~~~~~vvVIGgG~~glE~A~~l~~~g~~--------------------------- 595 (866)
|+.||.++.+...+++..+++. ....+++|+|||||++|+|+|..+.+.|.+
T Consensus 2 Pr~p~IpG~d~~~V~~a~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (162)
T d1ps9a2 2 PRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQ 81 (162)
T ss_dssp ECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTT
T ss_pred CCCCCCCCCCCCCeEEHHHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccc
Confidence 6777777778888999877764 345789999999999999999999999864
Q ss_pred ----------EEEEec-CCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEec
Q psy9583 596 ----------VTILEM-SSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIF 664 (866)
Q Consensus 596 ----------Vtli~~-~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~ 664 (866)
++.+.. ...+...++..........++..||++++++.+.++. ++++.+.. +|. ...++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~--~~gv~~~~---~g~----e~~i~a 152 (162)
T d1ps9a2 82 GMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKID--DDGLHVVI---NGE----TQVLAV 152 (162)
T ss_dssp CCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEE--TTEEEEEE---TTE----EEEECC
T ss_pred cceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEc--CCCCEEec---CCe----EEEEEC
Confidence 233333 3333345666667788899999999999999999986 44555433 333 457999
Q ss_pred cEEEEeecc
Q psy9583 665 DKLLIAIGR 673 (866)
Q Consensus 665 D~vi~a~G~ 673 (866)
|.||+|+|.
T Consensus 153 D~Vv~A~Gq 161 (162)
T d1ps9a2 153 DNVVICAGQ 161 (162)
T ss_dssp SEEEECCCE
T ss_pred CEEEECCCC
Confidence 999999996
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.00 E-value=8e-10 Score=113.12 Aligned_cols=188 Identities=21% Similarity=0.282 Sum_probs=104.0
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-----------------------------------ccc------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-----------------------------------TVD------ 610 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-----------------------------------~~d------ 610 (866)
.++|||+|+.|+.+|..++++|.+|.++++.. +.. .++
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 81 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE 81 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence 47999999999999999999999999999743 110 000
Q ss_pred ------HHHHHHHHHHHHHcCCEEEeCce-EEEEEEcCCeEEEEEeeCCC---CccceeEEEeccEEEEeecccc-----
Q psy9583 611 ------EEIAKKAFHLLNKQGLNIILNTK-IHDIKINKENVLINYSNKST---NVKTEIITSIFDKLLIAIGRIP----- 675 (866)
Q Consensus 611 ------~~~~~~l~~~l~~~GV~i~~~~~-v~~i~~~~~~~~v~~~~~~g---~~~~~~~~~~~D~vi~a~G~~p----- 675 (866)
..+.+.+...|++.||+++.+.. ... ...+.+....... ....+...+.+|.|++|||.+|
T Consensus 82 ~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~----~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~ 157 (259)
T d1onfa1 82 RRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLS----ENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSP 157 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC------------------------------CBSSEEECCCCCBCCBCC
T ss_pred hhheeeeccccchhhhcccccceEEeeeccccc----ccccccccceeccccccCccceEEEeeeeEEEecCCCCccccc
Confidence 12233345667889999987642 110 0111111100000 0001124799999999999999
Q ss_pred CCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCccEEEEccC
Q psy9583 676 NTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHSINFNALPFVIYTFP 755 (866)
Q Consensus 676 ~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~ 755 (866)
+.+.+.++..++..+ ++.+.+|+..+|++.++|++||++......+.+..+...+..+-. ........+..+++.+
T Consensus 158 ~~~~~~l~~~~i~ts-~~~~~~d~~~~t~Vig~gaiGdv~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 233 (259)
T d1onfa1 158 DTENLKLEKLNVETN-NNYIVVDENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEER---YLNKKENVTEDIFYNV 233 (259)
T ss_dssp TTTTSSCTTTTCCBS-SSCEEECTTCBCSSSSEEECSTTEEEC---------------------------------CBCC
T ss_pred cccccccccceeeec-ccccccccCCceeEeeEEEEEEeeehhhhhhhcchhhHhhhcCCc---cccccCCcceEEecCc
Confidence 566666777777765 788999999999999999999998654433333222222222211 1122344566677888
Q ss_pred ceeeeecCHHHHH
Q psy9583 756 EIASVGKTEQYLK 768 (866)
Q Consensus 756 ~~a~vGl~e~~a~ 768 (866)
++..++.++.+..
T Consensus 234 ~~~~V~~~~G~~~ 246 (259)
T d1onfa1 234 QLTPVAINAGRLL 246 (259)
T ss_dssp CCHHHHHHHHHHH
T ss_pred EEEEEEcccceeE
Confidence 8887777665543
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.99 E-value=6.3e-10 Score=109.37 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=74.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
.|||+||||||||++||.++++.|.+++||+++. ..+|+.|.+ |.............. ...+
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~-----~~ig~~~cn----p~~gg~~kg~l~rei----d~kG----- 63 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL-----DAVMMPFLP----PKPPFPPGSLLERAY----DPKD----- 63 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG-----GGTTCCSSC----CCSCCCTTCHHHHHC----CTTC-----
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc-----chhcccccC----CccccCCCcceeeee----eccc-----
Confidence 4999999999999999999999999999999852 345655533 221111111111100 0000
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKA 544 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p 544 (866)
.......... -..+.+..+++++.++++.+.. .++...-|.+.+|..|.++.|||+||...
T Consensus 64 --~av~a~raQ~----------k~~l~~~~nL~i~q~~V~dli~--e~~~v~gV~t~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 64 --ERVWAFHARA----------KYLLEGLRPLHLFQATATGLLL--EGNRVVGVRTWEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp --CCHHHHHHHH----------HHHHHTCTTEEEEECCEEEEEE--ETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred --hhhhhHHHHH----------HHHHhhhcCHHHHhccceeeEe--cccceeeEEeccccEEEEeEEEEccCcce
Confidence 0000111110 0123345689999888776422 12244556777888899999999999753
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.99 E-value=6.8e-11 Score=121.88 Aligned_cols=108 Identities=17% Similarity=0.122 Sum_probs=73.4
Q ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCC-----cccc-CeeecCCCcE
Q psy9583 622 NKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN-----IDKI-GLKVNENNFI 695 (866)
Q Consensus 622 ~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~-----l~~~-gl~~~~~G~i 695 (866)
+..+..++.++.+..+...++.+.+.+. +|. .+.+|.++++.........+. +... ...++..++.
T Consensus 221 ~~~~~~i~~~~~v~~i~~~~~~v~v~~~--~g~------~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~ 292 (347)
T d1b5qa1 221 KIVDPRLQLNKVVREIKYSPGGVTVKTE--DNS------VYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPV 292 (347)
T ss_dssp CBCCTTEESSCCEEEEEECSSCEEEEET--TSC------EEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBT
T ss_pred hhcccccccccccccccccCccEEEEEC--CCC------EEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCc
Confidence 3456789999999999988888777664 676 889999999876432211110 0000 0011223333
Q ss_pred EeC----CCCCCCCCCEEEecccCC--CCCcHHHHHHHHHHHHHHHhC
Q psy9583 696 IVN----DNCETNIPNIYAIGDVVR--GPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 696 ~Vd----~~l~Ts~~~VyA~GD~a~--~~~~~~~A~~~g~~aa~~i~g 737 (866)
.++ +.++++.++||++||+++ .|...+.|+.+|+.||+.|++
T Consensus 293 ~~~~~~~~~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~ 340 (347)
T d1b5qa1 293 GVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILIN 340 (347)
T ss_dssp TCCHHHHHHHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHH
Confidence 333 345688999999999986 356789999999999999874
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.92 E-value=3.9e-10 Score=121.10 Aligned_cols=114 Identities=16% Similarity=0.101 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCC---Ccc----ccCe
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNL---NID----KIGL 687 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l---~l~----~~gl 687 (866)
....+.+++.|+++++++.|.+|..+++++.++.. +|. ++.+|.||+|++..--.... .+. +..-
T Consensus 211 ~~~~~l~~~~g~~i~~~~~v~~I~~~~~~v~v~~~--~g~------~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~ 282 (383)
T d2v5za1 211 QVSERIMDLLGDRVKLERPVIYIDQTRENVLVETL--NHE------MYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMIT 282 (383)
T ss_dssp HHHHHHHHHHGGGEEESCCEEEEECSSSSEEEEET--TSC------EEEESEEEECSCGGGGGGSEEESCCCHHHHHHTT
T ss_pred HHHHHHHHHcCCeEEecCcceEEEecCCeEEEEEC--CCC------EEECCEEEECCCHHHHhhCccCCCCCHHHHHHHH
Confidence 34445567789999999999999988888776654 776 88999999998642211110 000 0000
Q ss_pred eecCCCc-EEeCCCCCCCCCCEEEecccCC--CCCcHHHHHHHHHHHHHHHh
Q psy9583 688 KVNENNF-IIVNDNCETNIPNIYAIGDVVR--GPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 688 ~~~~~G~-i~Vd~~l~Ts~~~VyA~GD~a~--~~~~~~~A~~~g~~aa~~i~ 736 (866)
.....|. -.....+.....+|+.+|+... .+.....|+.+|+.+|..++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~ 334 (383)
T d2v5za1 283 RVFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREIL 334 (383)
T ss_dssp SCCCTTHHHHHGGGTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred HhccCCccchhhhhhcCCcCceEeccccccccCCcchHHHHHHHHHHHHHHH
Confidence 0001111 1122333455677999998754 34567889999999998875
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=4.3e-09 Score=110.32 Aligned_cols=94 Identities=20% Similarity=0.314 Sum_probs=65.7
Q ss_pred HHHHHHcCCEEEeCceEEEEEEcCC-------eEE-EEEee-CCCCccceeEEEeccEEEEeeccccCCCCC--------
Q psy9583 618 FHLLNKQGLNIILNTKIHDIKINKE-------NVL-INYSN-KSTNVKTEIITSIFDKLLIAIGRIPNTNNL-------- 680 (866)
Q Consensus 618 ~~~l~~~GV~i~~~~~v~~i~~~~~-------~~~-v~~~~-~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l-------- 680 (866)
.+.++..+++++.++.+.++..+++ .+. +...+ .++. ...+.++.||+|+|--......
T Consensus 145 ~~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~----~~~~~ak~VilAtGG~~~~~~~~t~~~~~T 220 (305)
T d1chua2 145 SKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKET----VETCHAKAVVLATGGASKVYQYTTNPDISS 220 (305)
T ss_dssp HHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTE----EEEEECSEEEECCCCCGGGSSSBSCGGGCS
T ss_pred HHHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCc----EEEEeecceEEeeeccccceeccCCCCcee
Confidence 4556677899999999988876543 232 22222 2333 4578999999999843221110
Q ss_pred -----CccccCeeecCCCcEEeCCCCCCCCCCEEEecccC
Q psy9583 681 -----NIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVV 715 (866)
Q Consensus 681 -----~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a 715 (866)
.....|.++.+-++|.+|.+.+|+.|++||+|+++
T Consensus 221 GDG~~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~ 260 (305)
T d1chua2 221 GDGIAMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVS 260 (305)
T ss_dssp CHHHHHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGE
T ss_pred cccEeeccccceeeEecceeEECCcccCCCCCceecccEE
Confidence 02356778877889999999999999999999975
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.91 E-value=2.5e-09 Score=110.23 Aligned_cols=112 Identities=16% Similarity=0.218 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeee
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~ 689 (866)
+..+...+.+.+++.|++++.++.|++++.+++.+.|... +| ++.||.||+|+|.-... + ++.+|+..
T Consensus 150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~--~g-------~i~a~~vV~AaG~~s~~-l--~~~~G~~~ 217 (276)
T d1ryia1 150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTP--SG-------DVWANHVVVASGVWSGM-F--FKQLGLNN 217 (276)
T ss_dssp HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEET--TE-------EEEEEEEEECCGGGTHH-H--HHHTTCCC
T ss_pred cccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecC--Ce-------EEEcCEEEECCCccHHH-H--HhhcCCCc
Confidence 3456777788889999999999999999988777666553 43 68999999999964322 2 34555543
Q ss_pred cCCCcEEeCCCCCCCCCCE-EEecccCCCCCcHHHHHHHHHHHHHHHhCCC
Q psy9583 690 NENNFIIVNDNCETNIPNI-YAIGDVVRGPMLAHKAEEEGIMVAEHISGQK 739 (866)
Q Consensus 690 ~~~G~i~Vd~~l~Ts~~~V-yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~ 739 (866)
. ++...+..+- ..+++ ++.|..-.+. ..+-..|++.++-+++..
T Consensus 218 ~-~~~p~~~~~p--~~~~~~~~~g~~~~gi---~~~p~~g~~i~~~~~~~~ 262 (276)
T d1ryia1 218 A-DGKPYIGRHP--EDSRILFAAGHFRNGI---LLAPATGALISDLIMNKE 262 (276)
T ss_dssp C-SSCCEEEEET--TEEEEEEEECCSSCTT---TTHHHHHHHHHHHHTTCC
T ss_pred c-cccceecccc--CCCCEEECCCCCCCeE---EECccHHHHHHHHHhcCC
Confidence 2 2322221111 12334 4566543222 222334677777776654
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=9.9e-09 Score=91.76 Aligned_cols=101 Identities=17% Similarity=0.290 Sum_probs=82.5
Q ss_pred cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeE-EE
Q psy9583 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENV-LI 646 (866)
Q Consensus 568 ~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~-~v 646 (866)
..+|+|+|||||.+|+|.|.+|++.+.+|++++|++.+. .++...+.+.+..+..++.+++++.+.++..++..+ .+
T Consensus 25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~G~~~~v~~v 102 (126)
T d1trba2 25 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR--AEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGV 102 (126)
T ss_dssp GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC--CCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSSEEEE
T ss_pred hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc--chhHHHHHHHHhhcccceeEecceEEEEEECCCCceEEE
Confidence 458999999999999999999999999999999998763 467778888888888999999999999999987544 36
Q ss_pred EEeeCCCCccceeEEEeccEEEEeec
Q psy9583 647 NYSNKSTNVKTEIITSIFDKLLIAIG 672 (866)
Q Consensus 647 ~~~~~~g~~~~~~~~~~~D~vi~a~G 672 (866)
.+.+... ..+..++++|.+++++|
T Consensus 103 ~l~~~~~--~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 103 RLRDTQN--SDNIESLDVAGLFVAIG 126 (126)
T ss_dssp EEECCTT--CCCCEEEECSEEEECSC
T ss_pred EEEECCC--CceEEEEECCEEEEEeC
Confidence 6653211 11235799999999987
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.90 E-value=8.5e-11 Score=118.81 Aligned_cols=180 Identities=12% Similarity=0.136 Sum_probs=98.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCC-------CeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhh
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLG-------FKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFE 462 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g-------~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~ 462 (866)
.++|+|||+|||||+||.+|+++| ++|+|||+. +.+||.+.+ +..|......
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~------~~~GG~~~~-gi~p~~~~~~-------------- 60 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEML------PTPWGLVRS-GVAPDHPKIK-------------- 60 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESS------SSCSTHHHH-TSCTTCTGGG--------------
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecC------CCCCCeeee-ccCcccccch--------------
Confidence 378999999999999999999987 589999998 789996532 2223211100
Q ss_pred cCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCC
Q psy9583 463 YGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGS 542 (866)
Q Consensus 463 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs 542 (866)
. +.+....++...+++++.+..+..+. .+ +.....||++++|||+
T Consensus 61 ----------~--------------~~~~~~~~~~~~g~~~~~~~~v~~~~--------~~---~~~~~~~~~v~~atGa 105 (239)
T d1lqta2 61 ----------S--------------ISKQFEKTAEDPRFRFFGNVVVGEHV--------QP---GELSERYDAVIYAVGA 105 (239)
T ss_dssp ----------G--------------GHHHHHHHHTSTTEEEEESCCBTTTB--------CH---HHHHHHSSEEEECCCC
T ss_pred ----------h--------------hhhhhhhhhccCCceEEEEEEecccc--------ch---hhhhccccceeeecCC
Confidence 0 00111234566788887775432111 00 0112359999999998
Q ss_pred CCcCCCCCcCCCceEe-------cchhhhcc------ccCCCeEEEECCcHHHHHHHHHHHhc-CCcEEEEecCCcCCCc
Q psy9583 543 KARSFPGVKFDENLIL-------SNKGALEM------INVPKKLCIIGAGVIGLEIGSIWRRL-GSEVTILEMSSNFLNT 608 (866)
Q Consensus 543 ~p~~~p~~~~~~~~~~-------t~~~~~~~------~~~~~~vvVIGgG~~glE~A~~l~~~-g~~Vtli~~~~~~l~~ 608 (866)
.+..+...+....... ........ ....++++|+|+|..+++++..+... |...+ ... ...
T Consensus 106 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d~a~~~v~vig~g~~----~~~-~~~ 180 (239)
T d1lqta2 106 QSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKE----GAE-CKS 180 (239)
T ss_dssp CEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHHHHHHH----TTC-SCC
T ss_pred CccccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHHHHHHHHhhccCCcc----ccc-ccc
Confidence 7654432222211111 00000000 01246778888899999988755431 11100 000 111
Q ss_pred ccHHHHHHHHHHHHHcCCEEEe
Q psy9583 609 VDEEIAKKAFHLLNKQGLNIIL 630 (866)
Q Consensus 609 ~d~~~~~~l~~~l~~~GV~i~~ 630 (866)
..........+.+.++++++..
T Consensus 181 ~~~~~~~~~~~~l~~~~v~~v~ 202 (239)
T d1lqta2 181 FPEDHADQVADWLAARQPKLVT 202 (239)
T ss_dssp C--CHHHHHHHHHHHHCTTCEE
T ss_pred ccccchhHHHHHHHhcCCCccC
Confidence 1222344555667777777654
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.88 E-value=2.8e-09 Score=103.81 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=106.2
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcCCC---------cccHHHHHHHHHHHHHcCCEEEeCceEEEEE
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNFLN---------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIK 638 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~l~---------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 638 (866)
.++||+|||||++|+++|..|+++|. +|+++++++.+.. .............+...+..+.....+....
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 82 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENE 82 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBSTTS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEeccce
Confidence 47999999999999999999999998 5999999988754 1345555666666777778887766652110
Q ss_pred EcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCC--ccccCeeecCCCcEEeC-CCCCCCCCCEEEecccC
Q psy9583 639 INKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLN--IDKIGLKVNENNFIIVN-DNCETNIPNIYAIGDVV 715 (866)
Q Consensus 639 ~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~--l~~~gl~~~~~G~i~Vd-~~l~Ts~~~VyA~GD~a 715 (866)
.... . .....+|.+++++|..+...... ...........+....+ ..++|+.+.||++||++
T Consensus 83 -------~~~~--~------~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vi 147 (196)
T d1gtea4 83 -------ITLN--T------LKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV 147 (196)
T ss_dssp -------BCHH--H------HHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGG
T ss_pred -------eeee--h------hhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCccccccccccc
Confidence 0000 1 11345788999998655443321 11112233334444444 45889999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHh
Q psy9583 716 RGPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 716 ~~~~~~~~A~~~g~~aa~~i~ 736 (866)
++...+..|..+|+.++..+.
T Consensus 148 gg~~~av~a~~~g~~~a~~v~ 168 (196)
T d1gtea4 148 GMANTTVESVNDGKQASWYIH 168 (196)
T ss_dssp CSCCCHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhhhehhHh
Confidence 988889999999988887764
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.87 E-value=1.1e-08 Score=105.65 Aligned_cols=114 Identities=18% Similarity=0.312 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeee
Q psy9583 610 DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689 (866)
Q Consensus 610 d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~ 689 (866)
+..+...+.+.+++.|+++++++.|.+++..++++.|... +| ++.+|.||+|+|.-.+. + +..+|+..
T Consensus 149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~--~g-------~i~a~~VViAaG~~s~~-l--~~~lg~~~ 216 (281)
T d2gf3a1 149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETA--NG-------SYTADKLIVSMGAWNSK-L--LSKLNLDI 216 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEET--TE-------EEEEEEEEECCGGGHHH-H--GGGGTEEC
T ss_pred ccccccccccccccccccccCCcEEEEEEEECCEEEEEEC--Cc-------EEEcCEEEECCCCcchh-h--HHhcCCcc
Confidence 4566778888899999999999999999998888766543 44 68999999999965432 2 45666665
Q ss_pred cCCCcEEeCCCCCCCCCCE-EEecccCCCCCcHHHHHHHHHHHHHHHhCCCCC
Q psy9583 690 NENNFIIVNDNCETNIPNI-YAIGDVVRGPMLAHKAEEEGIMVAEHISGQKHS 741 (866)
Q Consensus 690 ~~~G~i~Vd~~l~Ts~~~V-yA~GD~a~~~~~~~~A~~~g~~aa~~i~g~~~~ 741 (866)
.... ..+.. +-..+++ .+.|.+-.++.+ +-..|+++++-++.....
T Consensus 217 ~~~~-~~~~~--~P~~~~~~~~~g~~g~g~~~---~p~~G~~~~~~~~~~~~~ 263 (281)
T d2gf3a1 217 PDEH-FIIDL--HPEHSNVVIAAGFSGHGFKF---SSGVGEVLSQLALTGKTE 263 (281)
T ss_dssp CTSC-CEEEE--ETTEEEEEEEECCTTCCGGG---HHHHHHHHHHHHHHSCCS
T ss_pred cccc-ceecc--ccCCCCEEEEeccCCccccc---ChhHHHHHHHHHhcCCCC
Confidence 4222 22210 1122444 455543322222 334677777776654433
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.84 E-value=3.9e-09 Score=112.30 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=39.0
Q ss_pred cccccceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccce
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
|...++|+|||||++||+||..|++.| .+|+|+||+ +.+||+|.+
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~------~~iGG~W~~ 47 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR------GSPGGVWNY 47 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS------SSSSTTCSC
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC------CCCCCcccc
Confidence 444578999999999999999998876 699999998 789999864
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=1.9e-09 Score=103.85 Aligned_cols=40 Identities=35% Similarity=0.716 Sum_probs=35.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcccee
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNV 438 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~ 438 (866)
|||+||||||+|++||..+++.|++|+|||++ +||.|.+.
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--------~gg~~~~~ 41 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--------FGGQILDT 41 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--------TTGGGGGC
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--------cCCccccc
Confidence 89999999999999999999999999999973 57766443
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.82 E-value=6.1e-09 Score=100.96 Aligned_cols=114 Identities=22% Similarity=0.294 Sum_probs=74.0
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
+++||+||||||+||+||..|++.|++|+|||+. ..||.|.....+... .+++.
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~-------~~~g~~~~~~~i~~~------------------~~~~~- 57 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-------EKGGQLTTTTEVENW------------------PGDPN- 57 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-------STTGGGGGCSBCCCS------------------TTCCS-
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEee-------cccccccccchhhhh------------------hcccc-
Confidence 4689999999999999999999999999999985 557766543322210 01110
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
...-..+.. .......+.++++..+.+...+. ....+.+... ...+.++.+++++|..++
T Consensus 58 --~~~~~~~~~-----------~~~~~~~~~~~~~~~~~V~~~~~---~~~~~~v~~~-~~~~~~~~viva~G~~~~ 117 (190)
T d1trba1 58 --DLTGPLLME-----------RMHEHATKFETEIIFDHINKVDL---QNRPFRLNGD-NGEYTCDALIIATGASAR 117 (190)
T ss_dssp --SCBHHHHHH-----------HHHHHHHHTTCEEECCCEEEEEC---SSSSEEEEES-SCEEEEEEEEECCCEEEC
T ss_pred --ccchHHHHH-----------HHHHHHHhcCcEEecceeEEEec---CCCcEEEEEe-eeeEeeeeeeeecceeee
Confidence 111111111 12344667788888776555433 2344555443 457899999999998765
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=7.5e-09 Score=91.33 Aligned_cols=95 Identities=17% Similarity=0.108 Sum_probs=68.5
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|++.|.+|+|+|+.+ .+...
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~------~~l~~------------------------------------ 59 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD------APLPS------------------------------------ 59 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSSTT------------------------------------
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc------hhhhh------------------------------------
Confidence 679999999999999999999999999999972 22100
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATG 541 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATG 541 (866)
++. .+.+.+...+++.||+++.++.+..-. ......+.+..++|+++.+|.||+|||
T Consensus 60 -~d~------------~~~~~~~~~l~~~GV~~~~~~~v~~i~-~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 60 -FDP------------MISETLVEVMNAEGPQLHTNAIPKAVV-KNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp -SCH------------HHHHHHHHHHHHHSCEEECSCCEEEEE-ECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred -cch------------hhHHHHHHHHHHCCCEEEeCCEEEEEE-EcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 000 011224456778899999998765211 112245666667888999999999998
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.79 E-value=3.8e-08 Score=87.81 Aligned_cols=111 Identities=21% Similarity=0.296 Sum_probs=81.8
Q ss_pred CCceEecchhhhccccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHH-HcCCEEEeC
Q psy9583 553 DENLILSNKGALEMINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLN-KQGLNIILN 631 (866)
Q Consensus 553 ~~~~~~t~~~~~~~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~-~~GV~i~~~ 631 (866)
.+..+..+..+......+|+|+|||||.+|+|.|.+|++...+|++++|++.+.. ++.. .+.+. ..+|+++++
T Consensus 13 ~gkGV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~--~~~~----~~~~~~~~~I~v~~~ 86 (126)
T d1fl2a2 13 RTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA--DQVL----QDKLRSLKNVDIILN 86 (126)
T ss_dssp BTTTEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS--CHHH----HHHHHTCTTEEEESS
T ss_pred cCCCEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc--cccc----ccccccccceeEEcC
Confidence 3444554443333344589999999999999999999999999999999987643 2332 33333 457999999
Q ss_pred ceEEEEEEcCCeE-EEEEeeC-CCCccceeEEEeccEEEEeecc
Q psy9583 632 TKIHDIKINKENV-LINYSNK-STNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 632 ~~v~~i~~~~~~~-~v~~~~~-~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
+.+.++..+++.+ .+.+.+. +|+ ..++++|.+++++|.
T Consensus 87 ~~v~~i~G~~~~v~~v~l~~~~tge----~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 87 AQTTEVKGDGSKVVGLEYRDRVSGD----IHNIELAGIFVQIGL 126 (126)
T ss_dssp EEEEEEEESSSSEEEEEEEETTTCC----EEEEECSEEEECSCE
T ss_pred cceEEEEccccceeeEEEEECCCCC----EEEEECCEEEEEeCC
Confidence 9999999876544 3556532 343 568999999999984
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.77 E-value=3e-09 Score=93.87 Aligned_cols=110 Identities=18% Similarity=0.265 Sum_probs=70.8
Q ss_pred ccccccccchhhhhhhhhhcccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHH
Q psy9583 368 YDHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447 (866)
Q Consensus 368 ~dhr~~dg~~a~~~~~~~~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~ 447 (866)
+.+++++..++..... + ..+++|||||+.|+.+|..|++.|.+|+|+|+.+ .+. |.
T Consensus 4 ~g~~~~~s~~~l~~~~---~--p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~------~il---------~~---- 59 (115)
T d1lvla2 4 LGGPVISSTEALAPKA---L--PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE------RIL---------PT---- 59 (115)
T ss_dssp CBTTEECHHHHTCCSS---C--CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS------SSS---------TT----
T ss_pred CCCcEECChHHhCccc---C--CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec------ccc---------cc----
Confidence 3456666554422111 1 2679999999999999999999999999999972 221 10
Q ss_pred HhhHHHHHHhhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEc--
Q psy9583 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIIN-- 525 (866)
Q Consensus 448 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~-- 525 (866)
++. .+...+...+++.||+++.++.+..-. . ....+..
T Consensus 60 ------------------------~d~------------~~~~~l~~~l~~~gV~i~~~~~V~~i~--~--~~~~~~~~~ 99 (115)
T d1lvla2 60 ------------------------YDS------------ELTAPVAESLKKLGIALHLGHSVEGYE--N--GCLLANDGK 99 (115)
T ss_dssp ------------------------SCH------------HHHHHHHHHHHHHTCEEETTCEEEEEE--T--TEEEEECSS
T ss_pred ------------------------ccc------------hhHHHHHHHHHhhcceEEcCcEEEEEc--C--CeEEEEEcC
Confidence 000 011123446778899999998766311 1 2233322
Q ss_pred CCceEEEecEEEEecC
Q psy9583 526 KTKETITAKYIIIATG 541 (866)
Q Consensus 526 ~~g~~i~~d~lViATG 541 (866)
.++.++.+|.||+|||
T Consensus 100 ~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 100 GGQLRLEADRVLVAVG 115 (115)
T ss_dssp SCCCEECCSCEEECCC
T ss_pred CCeEEEEcCEEEEecC
Confidence 2336899999999998
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.75 E-value=1.6e-08 Score=89.53 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=66.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..+++.|.+|+++++.+ .+- |. .
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~------~ll---------~~--------------------------~ 61 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD------KFL---------PA--------------------------V 61 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS------SSS---------TT--------------------------S
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeec------ccC---------Cc--------------------------c
Confidence 679999999999999999999999999999872 210 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCc-eEEEecEEEEecC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTK-ETITAKYIIIATG 541 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g-~~i~~d~lViATG 541 (866)
+.+ +...+...+++.|++++.++.+..-..+.+.-.+++...++ .++.+|+|++|+|
T Consensus 62 d~e--------------i~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 62 DEQ--------------VAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp CHH--------------HHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred cch--------------hHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 001 11224556788999999998776311122222444444333 6899999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.73 E-value=3.1e-08 Score=87.81 Aligned_cols=92 Identities=9% Similarity=0.108 Sum_probs=66.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|+++|.+|++||+.+ .+-.. .+
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~------~~l~~-----~~---------------------------- 70 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP------RLMSR-----AA---------------------------- 70 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS------STTTT-----TS----------------------------
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeecc------ccccc-----cC----------------------------
Confidence 4789999999999999999999999999999872 21000 00
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATG 541 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATG 541 (866)
+ ..+.+.+...+++.||+++.+..+.... ...+. .++|+++.+|.||+|+|
T Consensus 71 -~--------------~~~~~~~~~~l~~~GV~i~~~~~v~~~~----~~~v~--l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 71 -P--------------ATLADFVARYHAAQGVDLRFERSVTGSV----DGVVL--LDDGTRIAADMVVVGIG 121 (121)
T ss_dssp -C--------------HHHHHHHHHHHHTTTCEEEESCCEEEEE----TTEEE--ETTSCEEECSEEEECSC
T ss_pred -C--------------HHHHHHHHHHHHHCCcEEEeCCEEEEEe----CCEEE--ECCCCEEECCEEEEeeC
Confidence 0 0011123456788999999988776321 13443 36788999999999998
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=98.73 E-value=1.8e-08 Score=102.32 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=110.1
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------------------------cc--------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------------------------TV-------------- 609 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------------------------~~-------------- 609 (866)
..|+|||+|+.|+-+|..+++.|.+|.++++.+.+.. .+
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchh
Confidence 4699999999999999999999999999998764320 00
Q ss_pred -----------------------cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeE--EEEEeeCCCCccceeEEEec
Q psy9583 610 -----------------------DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENV--LINYSNKSTNVKTEIITSIF 664 (866)
Q Consensus 610 -----------------------d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~--~v~~~~~~g~~~~~~~~~~~ 664 (866)
..++.+.+.+.+++.||++++++.|++++..++.. ...+. .++. ++.|
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~-~~~~------~~~a 157 (253)
T d2gqfa1 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQ-VNST------QWQC 157 (253)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEE-ETTE------EEEE
T ss_pred hhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEe-cCCE------EEEe
Confidence 02345666777888999999999999998765532 22222 2443 8999
Q ss_pred cEEEEeeccccCCCCC-------CccccCeeecC-----CCcEE---eC-CCCCC-CCCCEEEecccCCC-----CCcHH
Q psy9583 665 DKLLIAIGRIPNTNNL-------NIDKIGLKVNE-----NNFII---VN-DNCET-NIPNIYAIGDVVRG-----PMLAH 722 (866)
Q Consensus 665 D~vi~a~G~~p~~~~l-------~l~~~gl~~~~-----~G~i~---Vd-~~l~T-s~~~VyA~GD~a~~-----~~~~~ 722 (866)
|.||+|+|-.+...+- .++.+++.+-+ .|.+. +| ..|+. .+||+|.+|.+... -...+
T Consensus 158 ~~VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~ 237 (253)
T d2gqfa1 158 KNLIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQ 237 (253)
T ss_dssp SEEEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHH
T ss_pred CEEEEcCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehh
Confidence 9999999966433220 02223332211 23343 33 34665 58999999977631 12467
Q ss_pred HHHHHHHHHHHHHhC
Q psy9583 723 KAEEEGIMVAEHISG 737 (866)
Q Consensus 723 ~A~~~g~~aa~~i~g 737 (866)
.|+..|..|++.|..
T Consensus 238 ~a~~s~~~~~~~~~~ 252 (253)
T d2gqfa1 238 WAWSSAYACALSISR 252 (253)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hhHhHHHHHHHHHhc
Confidence 899999999998864
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.72 E-value=2.4e-08 Score=90.19 Aligned_cols=98 Identities=11% Similarity=0.137 Sum_probs=67.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+++|+.+ .+.... +
T Consensus 35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~------~~l~~~-----------------------------~---- 75 (133)
T d1q1ra2 35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA------RVLERV-----------------------------T---- 75 (133)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------STTTTT-----------------------------S----
T ss_pred CCEEEEECCchHHHHHHHHHHhhCcceeeeeecc------cccccc-----------------------------c----
Confidence 4789999999999999999999999999999973 211000 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATG 541 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATG 541 (866)
.. .+...+...+++.||+++.+..+. +...........+..++|.++++|.||+|+|
T Consensus 76 -~~--------------~~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 76 -AP--------------PVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp -CH--------------HHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred -ch--------------hhhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 00 001123445778899999987665 3221122223345567888999999999998
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=5.7e-08 Score=92.01 Aligned_cols=125 Identities=20% Similarity=0.211 Sum_probs=90.8
Q ss_pred cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-----------cccHHHHHHHHHHHHHcCCEEEeCceEEE
Q psy9583 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-----------TVDEEIAKKAFHLLNKQGLNIILNTKIHD 636 (866)
Q Consensus 568 ~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-----------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 636 (866)
..+|+|+|||+|+.|++.|..|+++|.+|+++++.+.+.. ....++.+++.+.+++.||++++++.|+.
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt~ 120 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTA 120 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCS
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEcc
Confidence 4579999999999999999999999999999999887632 22457788889999999999999988732
Q ss_pred EEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCC
Q psy9583 637 IKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVR 716 (866)
Q Consensus 637 i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~ 716 (866)
+. ...+|.|++|+|..|..... .+++ .| .++-.+|....
T Consensus 121 ---------------~~-------~~~~d~vilAtG~~~~~~~~----pg~~---~g------------~~v~vigggd~ 159 (179)
T d1ps9a3 121 ---------------DQ-------LQAFDETILASGIPNRALAQ----PLID---SG------------KTVHLIGGCDV 159 (179)
T ss_dssp ---------------SS-------SCCSSEEEECCCEECCTTHH----HHHT---TT------------CCEEECGGGTC
T ss_pred ---------------cc-------cccceeEEEeecCCCccccc----chhc---cC------------CEEEEECCcHh
Confidence 11 34579999999998754321 1111 22 34555554333
Q ss_pred CCC-cHHHHHHHHHHHHH
Q psy9583 717 GPM-LAHKAEEEGIMVAE 733 (866)
Q Consensus 717 ~~~-~~~~A~~~g~~aa~ 733 (866)
... ....|..+|..++-
T Consensus 160 a~~~~~~~Av~~G~~va~ 177 (179)
T d1ps9a3 160 AMELDARRAIAQGTRLAL 177 (179)
T ss_dssp CSSCCHHHHHHHHHHHHH
T ss_pred hhhccchhhhhccCEEEE
Confidence 333 36788888876654
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.69 E-value=1.5e-09 Score=108.92 Aligned_cols=39 Identities=18% Similarity=0.324 Sum_probs=34.5
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCcc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~ 435 (866)
.+|+|||||||||+||.+|++. |++|+|||+. +.+||.+
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~------~~~gG~~ 42 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ------LVPFGLV 42 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS------SSSCTHH
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC------CCCCcee
Confidence 5799999999999999999876 7899999998 6788854
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=1.8e-09 Score=106.75 Aligned_cols=134 Identities=12% Similarity=0.101 Sum_probs=73.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCC--eEEEEeccC-CCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGF--KTACIDEWK-DNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGIN 466 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~--~V~liek~~-~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~ 466 (866)
++++||||||++|+.+|..|++.|. +|++|++++ .||.++.+.-.. ..+..+.... .. ......+..
T Consensus 4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~-~~~~~~~~~~--------~~-~~~~~~~~~ 73 (213)
T d1m6ia1 4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKEL-WFSDDPNVTK--------TL-RFKQWNGKE 73 (213)
T ss_dssp EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGG-GCC--CTHHH--------HC-EEECTTSCE
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceec-ccccCchhhh--------hh-hhhhcccch
Confidence 5889999999999999999999875 699999874 344444331100 0000010000 00 000000000
Q ss_pred ccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCc
Q psy9583 467 TQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKAR 545 (866)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~ 545 (866)
. ...+.-.++. ........+++.||+++.++.+. ++. ..+++.+ ++|+++.||+||+|||+.|.
T Consensus 74 ~-~~~~~~~~~~---------~~~~~~~~~~~~gI~~~~g~~V~~id~---~~~~V~l--~dG~~i~~d~lViAtG~~~~ 138 (213)
T d1m6ia1 74 R-SIYFQPPSFY---------VSAQDLPHIENGGVAVLTGKKVVQLDV---RDNMVKL--NDGSQITYEKCLIATGGTEP 138 (213)
T ss_dssp E-ESBSSCGGGS---------BCTTTTTTSTTCEEEEEETCCEEEEEG---GGTEEEE--TTSCEEEEEEEEECCCEEEE
T ss_pred h-hhhcCChhhh---------hhhhhHHHHHHCCeEEEeCCEEEEeec---cCceeee--ccceeeccceEEEeeeeecc
Confidence 0 0000000000 00001123567899999988766 443 3355544 67889999999999998877
Q ss_pred CCC
Q psy9583 546 SFP 548 (866)
Q Consensus 546 ~~p 548 (866)
.++
T Consensus 139 ~~~ 141 (213)
T d1m6ia1 139 NVE 141 (213)
T ss_dssp CCT
T ss_pred hhh
Confidence 543
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.66 E-value=1.9e-08 Score=103.81 Aligned_cols=50 Identities=28% Similarity=0.396 Sum_probs=44.4
Q ss_pred ccceeeecCCccHHHHHHHHHH-CCCeEEEEeccCCCcccccCCCccceeccccchh
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ-LGFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~-~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~ 445 (866)
++||+|||||||||+||.+|++ .|++|+|||+. +.+||.|.+.+|.+++.
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~------~~~GG~~~~~g~~~~~~ 83 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS------VSPGGGAWLGGQLFSAM 83 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESS------SSCCTTTTCCSTTCCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecC------CCCCCceeecCEEcCHH
Confidence 5999999999999999999987 59999999998 68999999888876543
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.64 E-value=7.1e-08 Score=85.06 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=72.4
Q ss_pred ecccccccccchhhhhhhhhhcccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchh
Q psy9583 366 LSYDHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445 (866)
Q Consensus 366 l~~dhr~~dg~~a~~~~~~~~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~ 445 (866)
+.++.++++..++...... ..+++|||||+.|+.+|..++++|.+|+|+|+. +.+....
T Consensus 3 ~~~~~~i~~s~~~l~~~~~-----p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~------~~il~~~---------- 61 (117)
T d1ebda2 3 FKFSNRILDSTGALNLGEV-----PKSLVVIGGGYIGIELGTAYANFGTKVTILEGA------GEILSGF---------- 61 (117)
T ss_dssp BCCCSSEECHHHHHTCSSC-----CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS------SSSSTTS----------
T ss_pred CCCCCCEEChhHhhChhhc-----CCeEEEECCCccceeeeeeecccccEEEEEEec------ceecccc----------
Confidence 3455677777665422221 267999999999999999999999999999987 2221000
Q ss_pred HHHhhHHHHHHhhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEE
Q psy9583 446 LLQTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQII 524 (866)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~ 524 (866)
+. .+...+...+++.||+++.+..+. +.. +.+...+.+.
T Consensus 62 -------------------------d~--------------~~~~~l~~~l~~~GI~i~~~~~v~~i~~-~~~~~~v~~~ 101 (117)
T d1ebda2 62 -------------------------EK--------------QMAAIIKKRLKKKGVEVVTNALAKGAEE-REDGVTVTYE 101 (117)
T ss_dssp -------------------------CH--------------HHHHHHHHHHHHTTCEEEESEEEEEEEE-ETTEEEEEEE
T ss_pred -------------------------cc--------------hhHHHHHHHHHhcCCEEEcCCEEEEEEE-cCCEEEEEEE
Confidence 00 011123456788999999999877 322 1112233333
Q ss_pred cCCc-eEEEecEEEEe
Q psy9583 525 NKTK-ETITAKYIIIA 539 (866)
Q Consensus 525 ~~~g-~~i~~d~lViA 539 (866)
.++. +++.+|.|++.
T Consensus 102 ~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 102 ANGETKTIDADYVLVT 117 (117)
T ss_dssp ETTEEEEEEESEEEEC
T ss_pred eCCCEEEEEeEEEEEC
Confidence 3322 67999999973
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.64 E-value=1.1e-07 Score=102.33 Aligned_cols=120 Identities=15% Similarity=0.078 Sum_probs=65.9
Q ss_pred HHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEee------CCCCcc---ceeEEEeccEEEEeeccccCCCCCCccc
Q psy9583 614 AKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSN------KSTNVK---TEIITSIFDKLLIAIGRIPNTNNLNIDK 684 (866)
Q Consensus 614 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~------~~g~~~---~~~~~~~~D~vi~a~G~~p~~~~l~l~~ 684 (866)
...+.+..+..|+.+..+..+.++..++++....... ..+... .......++..+++.|.+.......++.
T Consensus 144 ~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~ 223 (380)
T d2gmha1 144 VSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKK 223 (380)
T ss_dssp HHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHH
T ss_pred HHHHHHHHhhccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhh
Confidence 4455666677888888888888877655432221111 111100 0112456778888888654321100111
Q ss_pred cCee--ecC-CCcEEeCCCCCCCCCCEEEecccCCCC-----CcHHHHHHHHHHHHHHHh
Q psy9583 685 IGLK--VNE-NNFIIVNDNCETNIPNIYAIGDVVRGP-----MLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 685 ~gl~--~~~-~G~i~Vd~~l~Ts~~~VyA~GD~a~~~-----~~~~~A~~~g~~aa~~i~ 736 (866)
..+. ... .|+- ..-+...+|+..+||+++.- .-.+.|+..|+.||+.+.
T Consensus 224 ~~l~~~~~~~~G~~---sip~l~~~G~lLVGDAAG~vnP~~g~GI~~Am~SG~lAAeai~ 280 (380)
T d2gmha1 224 FDLRANCEPQGGFQ---SIPKLTFPGGLLIGCSPGFMNVPKIKGTHTAMKSGTLAAESIF 280 (380)
T ss_dssp TTTTTTSCCCCGGG---GCCCCEETTEEECTTTTCCCBTTTTBCHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccc---cccccccCCeeEEeccccccchhhcCCeeeeeccHHHHHHHHH
Confidence 1110 001 1210 00123468999999999842 357899999999999986
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.60 E-value=4.5e-08 Score=87.18 Aligned_cols=114 Identities=14% Similarity=0.051 Sum_probs=74.7
Q ss_pred ccccccccchhhhhhhhhhcccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHH
Q psy9583 368 YDHRIIDGREAVLSLMSFIMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALL 447 (866)
Q Consensus 368 ~dhr~~dg~~a~~~~~~~~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~ 447 (866)
.+.|+++..++..... ...+++|||||+.|+.+|..+++.|.+|+++|+. +.+-..+
T Consensus 9 ~~~~i~ts~~~l~l~~-----~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~------~~il~~~------------ 65 (125)
T d1ojta2 9 EDPRIIDSSGALALKE-----VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM------DGLMQGA------------ 65 (125)
T ss_dssp CCTTEECHHHHTTCCC-----CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSS------SSSSTTS------------
T ss_pred CCCcEEcHHHhhCccc-----cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEee------ccccccc------------
Confidence 4557777666542221 1367999999999999999999999999999987 2221100
Q ss_pred HhhHHHHHHhhhhhhcCccccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCC
Q psy9583 448 QTSHSFENVKNSFFEYGINTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKT 527 (866)
Q Consensus 448 ~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~ 527 (866)
+.+ +...+...+++.||+++.++.+..-....+...+.+...+
T Consensus 66 -----------------------d~~--------------~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~ 108 (125)
T d1ojta2 66 -----------------------DRD--------------LVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGAN 108 (125)
T ss_dssp -----------------------CHH--------------HHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSS
T ss_pred -----------------------hhh--------------HHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEeCC
Confidence 001 1112445678889999998877621111222334444443
Q ss_pred c--eEEEecEEEEecC
Q psy9583 528 K--ETITAKYIIIATG 541 (866)
Q Consensus 528 g--~~i~~d~lViATG 541 (866)
+ +++.+|+|++|+|
T Consensus 109 g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 109 APKEPQRYDAVLVAAG 124 (125)
T ss_dssp CCSSCEEESCEEECCC
T ss_pred CCeEEEEcCEEEEecC
Confidence 3 5799999999999
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.57 E-value=2.1e-08 Score=96.06 Aligned_cols=107 Identities=13% Similarity=0.096 Sum_probs=65.5
Q ss_pred cceeeecCCccHHHHHHHHHHCC--CeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLG--FKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++|||||||++|+.+|..|++.+ .+|+|||+.+ .+... .....+.... ....
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~------~~~~~------~~~~~~~~~~--------------~~~~ 56 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT------DYYTC------YLSNEVIGGD--------------RKLE 56 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS------CEECS------TTHHHHHHTS--------------SCGG
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC------ccccc------cccccccchh--------------hhhh
Confidence 57999999999999999999987 5899999873 21111 0000000000 0000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF 547 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~ 547 (866)
.... ........++.+..+.....+. ....+ ...+++.+.||+||+|||..|...
T Consensus 57 ~~~~-------------------~~~~~~~~~v~~~~~~~~~~~~---~~~~~--~~~~~~~i~~D~li~atG~~~~~~ 111 (186)
T d1fcda1 57 SIKH-------------------GYDGLRAHGIQVVHDSATGIDP---DKKLV--KTAGGAEFGYDRCVVAPGIELIYD 111 (186)
T ss_dssp GGEE-------------------CSHHHHTTTEEEECCCEEECCT---TTTEE--EETTSCEEECSEEEECCCEEECCT
T ss_pred hhhh-------------------hhhhccccceeEeeeeeEeeee---cccee--ecccceeeccceEEEEeccccchh
Confidence 0000 0112445688888877766544 22333 335678999999999999887643
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=1.3e-08 Score=102.93 Aligned_cols=45 Identities=31% Similarity=0.414 Sum_probs=41.7
Q ss_pred hcccccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 386 ~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
.|+++|||||||||++|++||..|++.|++|+|||++ +.+||.|.
T Consensus 1 ~m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~------~~~GG~~~ 45 (297)
T d2bcgg1 1 TIDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQ------DHYGGEAA 45 (297)
T ss_dssp CCCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCGGGC
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCC------CCCCcceE
Confidence 3778899999999999999999999999999999998 78999874
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.53 E-value=1.1e-07 Score=83.75 Aligned_cols=94 Identities=11% Similarity=0.032 Sum_probs=65.6
Q ss_pred cceeeecCCccHHHHHHHHHHC---CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL---GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~---g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
.+++|||||+.|+.+|..++++ |.+|+++++.+ .+. | ++
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~------~il---------~---------------------~~-- 60 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD------MIL---------R---------------------GF-- 60 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS------SSS---------T---------------------TS--
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceecccc------ccc---------c---------------------cc--
Confidence 6799999999999999876554 88999999862 211 0 00
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecC
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATG 541 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATG 541 (866)
+. .+...+...+++.||+++.++.+. +.. ..+....+..++|.++.+|.||+|||
T Consensus 61 ---d~--------------~~~~~~~~~l~~~GI~v~~~~~v~~i~~--~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 61 ---DS--------------ELRKQLTEQLRANGINVRTHENPAKVTK--NADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp ---CH--------------HHHHHHHHHHHHTTEEEEETCCEEEEEE--CTTSCEEEEETTSCEEEESEEEECSC
T ss_pred ---cc--------------hhhHHHHHHHhhCcEEEEcCCEEEEEEE--CCCCEEEEEECCCCEEEcCEEEEecC
Confidence 00 011224556888999999998766 321 12234556667888999999999999
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.51 E-value=1.4e-07 Score=91.14 Aligned_cols=34 Identities=26% Similarity=0.546 Sum_probs=32.2
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+++||+||||||+|++||.+|++.|++++|+|+.
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~ 37 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGW 37 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence 4699999999999999999999999999999986
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.51 E-value=1.9e-07 Score=82.91 Aligned_cols=89 Identities=21% Similarity=0.309 Sum_probs=63.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|++.|.+|+|+|+.+ .+.+ ++
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~------~l~~-------------------------------~d--- 71 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA------MFLG-------------------------------LD--- 71 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS------CCTT-------------------------------CC---
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc------cccC-------------------------------CC---
Confidence 3789999999999999999999999999999862 2210 00
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCC
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGS 542 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs 542 (866)
. .+...+...+++.||+++.++.+. ... +.+ + .++..+.+|.+|+|+|.
T Consensus 72 --~--------------~~~~~~~~~l~~~GV~~~~~~~v~~~~~-----~~v-~--~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 72 --E--------------ELSNMIKDMLEETGVKFFLNSELLEANE-----EGV-L--TNSGFIEGKVKICAIGI 121 (122)
T ss_dssp --H--------------HHHHHHHHHHHHTTEEEECSCCEEEECS-----SEE-E--ETTEEEECSCEEEECCE
T ss_pred --H--------------HHHHHHHHHHHHCCcEEEeCCEEEEEeC-----CEE-E--eCCCEEECCEEEEEEEe
Confidence 0 011123456788899999987665 322 233 2 24678999999999994
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.49 E-value=6.9e-07 Score=94.38 Aligned_cols=167 Identities=20% Similarity=0.199 Sum_probs=108.6
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcC--CcEEEEecCCcCCC----------------------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLG--SEVTILEMSSNFLN---------------------------------------- 607 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g--~~Vtli~~~~~~l~---------------------------------------- 607 (866)
-|+|+|||+|++|+-+|..|.+.| .+|+++++++.+..
T Consensus 4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y 83 (335)
T d2gv8a1 4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY 83 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence 379999999999999999998876 58999999976520
Q ss_pred ------------------------cc--cHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEE
Q psy9583 608 ------------------------TV--DEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIIT 661 (866)
Q Consensus 608 ------------------------~~--d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~ 661 (866)
.+ ..++.+.+....+..+..++++++|++++.+++++.|++.+.... .+...
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~--~~~~~ 161 (335)
T d2gv8a1 84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAG--SPISK 161 (335)
T ss_dssp TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTT--CCEEE
T ss_pred hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCC--CeEEE
Confidence 00 135666677776777889999999999999999988887743221 22345
Q ss_pred EeccEEEEeeccc--cCCCCCC---------ccccCeeecCCCcEEeCCCC---CCCCCCEEEecccCCCCCcHHHHHHH
Q psy9583 662 SIFDKLLIAIGRI--PNTNNLN---------IDKIGLKVNENNFIIVNDNC---ETNIPNIYAIGDVVRGPMLAHKAEEE 727 (866)
Q Consensus 662 ~~~D~vi~a~G~~--p~~~~l~---------l~~~gl~~~~~G~i~Vd~~l---~Ts~~~VyA~GD~a~~~~~~~~A~~~ 727 (866)
..+|.||+|+|.. |+...+. ++.....+-.+|.-..+-+. ....|.+..+|=...... ....-.|
T Consensus 162 ~~~d~VI~AtG~~s~p~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~ly~~~~~~~~p~l~f~G~~~~v~~-~~~~e~Q 240 (335)
T d2gv8a1 162 DIFDAVSICNGHYEVPYTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVP-FPTSQAQ 240 (335)
T ss_dssp EEESEEEECCCSSSSBCCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCH-HHHHHHH
T ss_pred EEeeEEEEcccccccceecccccCCCCcchhcccCccceeccccceeeeecccccCCCCceEEeeeEEEEec-CCchHHH
Confidence 6799999999963 4433210 01111111111111111111 235688888885554333 3456778
Q ss_pred HHHHHHHHhCCC
Q psy9583 728 GIMVAEHISGQK 739 (866)
Q Consensus 728 g~~aa~~i~g~~ 739 (866)
+..+++-+.|..
T Consensus 241 a~~~a~~~~g~~ 252 (335)
T d2gv8a1 241 AAFLARVWSGRL 252 (335)
T ss_dssp HHHHHHHHTTSS
T ss_pred HHHHHHHHcCCc
Confidence 888888777753
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2e-07 Score=84.49 Aligned_cols=96 Identities=17% Similarity=0.165 Sum_probs=67.7
Q ss_pred ccceeeecCCccHHHHHHHHHH----CCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ----LGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGI 465 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~----~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi 465 (866)
..+++|||||+.|+.+|..|++ .|.+|++|++.+ .+-+. .+|
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~------~~l~~-----~~~----------------------- 82 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK------GNMGK-----ILP----------------------- 82 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS------STTTT-----TSC-----------------------
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc------cCCcc-----cCC-----------------------
Confidence 4679999999999999988853 589999999862 21100 000
Q ss_pred cccccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEecC
Q psy9583 466 NTQNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIATG 541 (866)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViATG 541 (866)
. .+...+...+++.||+++.++.+.. +......+.+..++|+++.+|.||+|+|
T Consensus 83 ------~--------------~~~~~~~~~l~~~GV~~~~~~~V~~--i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 83 ------E--------------YLSNWTMEKVRREGVKVMPNAIVQS--VGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp ------H--------------HHHHHHHHHHHTTTCEEECSCCEEE--EEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred ------H--------------HHHHHHHHHHHhCCcEEEeCCEEEE--EEecCCEEEEEECCCCEEECCEEEEeec
Confidence 0 0111234567889999999876662 1123366677778889999999999999
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=1e-07 Score=99.72 Aligned_cols=34 Identities=35% Similarity=0.397 Sum_probs=31.3
Q ss_pred cccceeeecCCccHHHHHHHHHHC--CCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~ 422 (866)
.++||+|||+|+|||+||.++++. |.+|+|+||.
T Consensus 4 ~~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~ 39 (311)
T d1kf6a2 4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKV 39 (311)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECC
Confidence 358999999999999999999986 6899999997
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.46 E-value=1.1e-06 Score=78.18 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=73.4
Q ss_pred cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC--eE-
Q psy9583 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKE--NV- 644 (866)
Q Consensus 568 ~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~--~~- 644 (866)
..+|+|+|||||.+|+|.|.+|++...+||+++|++.+-. ++... .+.++..+|++++++.+.++.+++. .+
T Consensus 32 frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra--~~~~~---~~l~~~~nI~v~~~~~v~~i~Gd~~~~~v~ 106 (130)
T d1vdca2 32 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA--SKIMQ---QRALSNPKIDVIWNSSVVEAYGDGERDVLG 106 (130)
T ss_dssp GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS--CHHHH---HHHHTCTTEEEECSEEEEEEEESSSSSSEE
T ss_pred hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc--chhhh---hccccCCceEEEeccEEEEEEccCCcccEE
Confidence 3589999999999999999999999999999999998754 33332 3344556799999999999998753 23
Q ss_pred EEEEee-CCCCccceeEEEeccEEEEee
Q psy9583 645 LINYSN-KSTNVKTEIITSIFDKLLIAI 671 (866)
Q Consensus 645 ~v~~~~-~~g~~~~~~~~~~~D~vi~a~ 671 (866)
.+.+.+ .+++ ..++++|.+++++
T Consensus 107 ~v~l~~~~tge----~~~l~~dGvFVaI 130 (130)
T d1vdca2 107 GLKVKNVVTGD----VSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEEETTTCC----EEEEECSEEEECS
T ss_pred EEEEEECCCCC----EEEEECCEEEEEC
Confidence 355543 2333 5689999999874
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.44 E-value=2.7e-07 Score=89.56 Aligned_cols=114 Identities=15% Similarity=0.188 Sum_probs=69.7
Q ss_pred cceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQ 468 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~ 468 (866)
++|+|||||++|+.+|..|++. +.+|+++++++ .+. +..|- ....+.. .+..
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~------~~~----~~~~~----------~~~~l~~-----~~~~- 54 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD------FIS----FLSAG----------MQLYLEG-----KVKD- 54 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS------SSS----BCGGG----------HHHHHTT-----SSCC-
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC------ccc----ccccC----------cchhhcc-----cccc-
Confidence 3599999999999999999998 46899999862 211 00000 0000000 0000
Q ss_pred ccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCc--eEEEecEEEEecCCCC
Q psy9583 469 NVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTK--ETITAKYIIIATGSKA 544 (866)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g--~~i~~d~lViATGs~p 544 (866)
. ..+.......+++.||+++.++.+. ++. +.+.+.+.. .++ ..+.||++|+|+|+.|
T Consensus 55 -----~-----------~~~~~~~~~~l~~~gi~v~~~~~V~~i~~---~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~ 115 (198)
T d1nhpa1 55 -----V-----------NSVRYMTGEKMESRGVNVFSNTEITAIQP---KEHQVTVKDLVSGEERVENYDKLIISPGAVP 115 (198)
T ss_dssp -----G-----------GGSBSCCHHHHHHTTCEEEETEEEEEEET---TTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred -----h-----------HHHHHhhHHHHHHCCcEEEEeeceeeEee---ccccceeeecccccccccccceeeEeeccee
Confidence 0 0000111234677899999988776 433 456777653 333 5689999999999987
Q ss_pred cCCCC
Q psy9583 545 RSFPG 549 (866)
Q Consensus 545 ~~~p~ 549 (866)
..+.+
T Consensus 116 ~~~~g 120 (198)
T d1nhpa1 116 FELDG 120 (198)
T ss_dssp CCCCC
T ss_pred ecccc
Confidence 65433
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.44 E-value=7.4e-08 Score=99.84 Aligned_cols=33 Identities=27% Similarity=0.505 Sum_probs=31.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
+||+||||||+|+++|..|++.|++|+||||.+
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 799999999999999999999999999999973
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.43 E-value=1e-06 Score=81.04 Aligned_cols=101 Identities=11% Similarity=0.192 Sum_probs=71.2
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCc-EEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEE-E
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSE-VTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVL-I 646 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~-Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~-v 646 (866)
.+++|+|||||.+|+|+|..+.++|++ |++++|++.......+ .-...+...+++++.+..+.++..+++... +
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~----~~~~~a~~~~~~~~~~~~~~ei~~~~~~~~~v 119 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVP----EEVELAKEEKCEFLPFLSPRKVIVKGGRIVAV 119 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCH----HHHHHHHHTTCEEECSEEEEEEEEETTEEEEE
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccch----hheeecccccceeEeccccEEEEecCCceEEE
Confidence 468999999999999999999999865 8899887765332222 222345567899999999998887665432 1
Q ss_pred EE---e-eCCCC---ccceeEEEeccEEEEeecc
Q psy9583 647 NY---S-NKSTN---VKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 647 ~~---~-~~~g~---~~~~~~~~~~D~vi~a~G~ 673 (866)
.+ + +.+|. ..++..+++||.||+|+|.
T Consensus 120 ~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 120 QFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 11 1 12332 1234568999999999983
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.42 E-value=2e-07 Score=87.73 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=80.3
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccccc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNVT 471 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~~ 471 (866)
+|+|||||++|+.+|..|++ +.+|+|+++.+.+.... | . ....+.. .....
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~------------~---~-----~~~~~~~-----~~~~~--- 52 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSK------------P---M-----LSHYIAG-----FIPRN--- 52 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCS------------T---T-----HHHHHTT-----SSCGG---
T ss_pred eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccc------------c---c-----hhhhhhh-----hhhhh---
Confidence 59999999999999999975 67999999873221110 0 0 0000000 00000
Q ss_pred cCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEecCCCCcCC---
Q psy9583 472 LNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIATGSKARSF--- 547 (866)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViATGs~p~~~--- 547 (866)
.+......++.+.+++++.+..+. ++. ....+ . .++.++.||++|+|+|..|..+
T Consensus 53 ---------------~~~~~~~~~~~~~~v~~~~~~~v~~i~~---~~~~~-~--~~~~~i~~D~li~a~G~~~~~~~~~ 111 (167)
T d1xhca1 53 ---------------RLFPYSLDWYRKRGIEIRLAEEAKLIDR---GRKVV-I--TEKGEVPYDTLVLATGAPNVDLARR 111 (167)
T ss_dssp ---------------GGCSSCHHHHHHHTEEEECSCCEEEEET---TTTEE-E--ESSCEEECSEEEECCCEECCHHHHH
T ss_pred ---------------hhhHHHHHHHHhccceeeeecccccccc---ccccc-c--ccccccccceeEEEEEecCCchhhh
Confidence 000111234556789988876655 332 22222 2 2456799999999999876522
Q ss_pred CCCcCCCceEecchhhh-------ccccC-CCeEEEECCcHHHHHHHHHHHh
Q psy9583 548 PGVKFDENLILSNKGAL-------EMINV-PKKLCIIGAGVIGLEIGSIWRR 591 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~-------~~~~~-~~~vvVIGgG~~glE~A~~l~~ 591 (866)
.+...+. .+...+.+. ..-.. ..+..++|++..|++.|..+++
T Consensus 112 ~gl~~~~-~i~v~~~~~t~~~~i~aiGD~~~~~~~~~~~~~~a~~~a~~~a~ 162 (167)
T d1xhca1 112 SGIHTGR-GILIDDNFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLAD 162 (167)
T ss_dssp TTCCBSS-SEECCTTSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHH
T ss_pred cCceeCC-ceeeccccEecCCCeEEeeecccCCCeEEChHHHHHHHHHHHHH
Confidence 1222111 122111111 10000 1123467888999998888765
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=4e-07 Score=80.59 Aligned_cols=94 Identities=18% Similarity=0.296 Sum_probs=63.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..|+++|.+|+|+|+.+ .+- |. .
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~------~~l---------~~--------------------------~ 62 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP------QIG---------AS--------------------------M 62 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS------SSS---------SS--------------------------S
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEecc------ccc---------hh--------------------------h
Confidence 679999999999999999999999999999872 221 00 0
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcC-----CceEEEecEEEEe
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINK-----TKETITAKYIIIA 539 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~-----~g~~i~~d~lViA 539 (866)
+. .+...+...+++.||+++.++.+..-....+...+.+... .++++.+|.|++|
T Consensus 63 d~--------------ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 63 DG--------------EVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp CH--------------HHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred hh--------------hhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 00 0112244567889999999987772111122334444321 1267999999987
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=1.7e-07 Score=98.96 Aligned_cols=35 Identities=34% Similarity=0.574 Sum_probs=32.9
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
++|||+|||+|+|||+||.++++.|.+|+|+||.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~ 40 (330)
T d1neka2 6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (330)
T ss_dssp EEESCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 36999999999999999999999999999999973
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.38 E-value=5.1e-07 Score=79.17 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=66.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+|+|||||+.|+.+|..|++.|.+|+|+++.+ .+- |. +
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~------~il---------~~---------------------~---- 61 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN------RIL---------RK---------------------F---- 61 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS------SSC---------TT---------------------S----
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehhc------ccc---------cc---------------------c----
Confidence 3679999999999999999999999999999862 210 00 0
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEE-EecEEEEec
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETI-TAKYIIIAT 540 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i-~~d~lViAT 540 (866)
+ ..+...+...+++.||+++.++.+. +.. ..+..+.+..++|+.+ .||.||+|.
T Consensus 62 -d--------------~~~~~~~~~~l~~~gV~i~~~~~v~~i~~--~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 62 -D--------------ESVINVLENDMKKNNINIVTFADVVEIKK--VSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp -C--------------HHHHHHHHHHHHHTTCEEECSCCEEEEEE--SSTTCEEEEETTSCEEEEESEEEECC
T ss_pred -c--------------HHHHHHHHHHHHhCCCEEEECCEEEEEEE--cCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 0 0111224556788899999988766 321 1234567776777666 579999984
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.37 E-value=6e-07 Score=93.39 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=30.1
Q ss_pred cceeeecCCccHHHHHHHHHHCCC-eEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGF-KTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~ 422 (866)
.||+|||||.+|+++|++|+++|. +|+||||+
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 589999999999999999999995 69999997
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.36 E-value=8.2e-07 Score=78.67 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=63.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQN 469 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~ 469 (866)
..+++|||||+.|+.+|..|+++|.+|++||+.+ .+- |. .+
T Consensus 30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~------~~l---------~~--------------------~~---- 70 (123)
T d1nhpa2 30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD------RPL---------GV--------------------YL---- 70 (123)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS------STT---------TT--------------------TC----
T ss_pred CCEEEEECChHHHHHHHHHhhccceEEEEEEecC------ccc---------cc--------------------cc----
Confidence 3689999999999999999999999999999862 210 00 00
Q ss_pred cccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEEeccccCcccEEEEEcCCceEEEecEEEEec
Q psy9583 470 VTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIFTGKIQNNFHEIQIINKTKETITAKYIIIAT 540 (866)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~~~~~~~~~~~v~v~~~~g~~i~~d~lViAT 540 (866)
+. .+...+...+++.||+++.++.+.. +..+.....+. .++.++++|.||+|.
T Consensus 71 -d~--------------~~~~~~~~~l~~~gv~~~~~~~v~~--i~~~~~~~~v~-~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 71 -DK--------------EFTDVLTEEMEANNITIATGETVER--YEGDGRVQKVV-TDKNAYDADLVVVAV 123 (123)
T ss_dssp -CH--------------HHHHHHHHHHHTTTEEEEESCCEEE--EECSSBCCEEE-ESSCEEECSEEEECS
T ss_pred -ch--------------hhHHHHHHHhhcCCeEEEeCceEEE--EEcCCCEEEEE-eCCCEEECCEEEEEC
Confidence 00 0111234567888999999987763 11121222222 356789999999983
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.33 E-value=1.4e-06 Score=76.99 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=30.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+++|||||+.|+.+|..|++.|.+|+|+++.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 57999999999999999999999999999874
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.29 E-value=1e-06 Score=77.87 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=64.8
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+..|..|++.|.+|++|++.+ .+. | +.+
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~------~~l---------~---------------------~~d---- 62 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE------PLK---------L---------------------IKD---- 62 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC------TTT---------T---------------------CCS----
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccc------hhh---------c---------------------ccc----
Confidence 689999999999999999999999999999862 110 0 000
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccE--EE-EEcCCceEEEecEEEEecC
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHE--IQ-IINKTKETITAKYIIIATG 541 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~--v~-v~~~~g~~i~~d~lViATG 541 (866)
. .+.+.+...+++.+|+++.++.+. +.. +..... +. ....+++++++|.||+|+|
T Consensus 63 -~--------------~~~~~~~~~l~~~gI~v~~~~~v~~i~~-~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 63 -N--------------ETRAYVLDRMKEQGMEIISGSNVTRIEE-DANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp -H--------------HHHHHHHHHHHHTTCEEESSCEEEEEEE-CTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred -c--------------chhhhhhhhhhccccEEEcCCEEEEEEe-cCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 0 011223556788999999988876 322 111121 22 2234457899999999998
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.28 E-value=1.2e-06 Score=77.59 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=64.6
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCcccccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINTQNV 470 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 470 (866)
.+++|||||+.|+.+|..+++.|.+|+++++.+ .+- | ++
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~------~~l---------~---------------------~~----- 64 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS------EIV---------P---------------------TM----- 64 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS------SSS---------T---------------------TS-----
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc------ccC---------c---------------------hh-----
Confidence 679999999999999999999999999999972 210 0 00
Q ss_pred ccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEc-CCc--eEEEecEEEEec
Q psy9583 471 TLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIIN-KTK--ETITAKYIIIAT 540 (866)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~-~~g--~~i~~d~lViAT 540 (866)
.. .+...+...+++.||+++.++.+. +.. ..+...+.+.. +++ .++.+|+|++|.
T Consensus 65 d~--------------~~~~~l~~~l~~~GI~i~~~~~v~~i~~-~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 65 DA--------------EIRKQFQRSLEKQGMKFKLKTKVVGVDT-SGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp CH--------------HHHHHHHHHHHHSSCCEECSEEEEEEEC-SSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred hh--------------cchhhhhhhhhcccceEEcCCceEEEEE-ccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 00 011224556888999999999877 322 22233455543 233 568999999883
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.26 E-value=1.1e-06 Score=77.14 Aligned_cols=93 Identities=9% Similarity=0.001 Sum_probs=64.1
Q ss_pred cceeeecCCccHHHHHHHHHHC---CCeEEEEeccCCCcccccCCCccceeccccchhHHHhhHHHHHHhhhhhhcCccc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQL---GFKTACIDEWKDNEENFALGGTCTNVGCIPSKALLQTSHSFENVKNSFFEYGINT 467 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~---g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~~~~~~~~~~~~~~~~~~~gi~~ 467 (866)
.+++|||||+.|+.+|..+.++ |.+|+|||+.+ .+- | ++
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~------~iL---------~---------------------~~-- 62 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE------MIL---------R---------------------GF-- 62 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS------SSS---------T---------------------TS--
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc------hhh---------c---------------------cc--
Confidence 6799999999999999877665 46799999862 110 0 00
Q ss_pred cccccCHHHHHHHHHHHHHhhhhhHHHHHHhCCcEEEEeEEEE-eccccCcccEEEEEcCCceEEEecEEEEec
Q psy9583 468 QNVTLNLQKMLERKNNIIKKNNSGILFLFKKNKIKFFHGHAIF-TGKIQNNFHEIQIINKTKETITAKYIIIAT 540 (866)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~v~~g~~v~-~~~~~~~~~~v~v~~~~g~~i~~d~lViAT 540 (866)
+. .+...+...+++.||+++.+..+. +.. ..+..+.+..++|+++.+|.||+|.
T Consensus 63 ---d~--------------~~~~~l~~~l~~~GV~v~~~~~v~~ie~--~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 63 ---DH--------------TLREELTKQLTANGIQILTKENPAKVEL--NADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp ---CH--------------HHHHHHHHHHHHTTCEEEESCCEEEEEE--CTTSCEEEEETTSCEEEESEEEECS
T ss_pred ---ch--------------HHHHHHHHHHHhcCcEEEcCCEEEEEEE--cCCCeEEEEECCCcEEEeCEEEEeC
Confidence 00 011224556888999999998766 321 1234566777788899999999984
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.2e-06 Score=76.08 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=30.9
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+++|||||+.|+.+|..|++.|.+|+++++.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~ 54 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRH 54 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeec
Confidence 67999999999999999999999999999997
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=2e-07 Score=96.82 Aligned_cols=42 Identities=29% Similarity=0.451 Sum_probs=39.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
++||+|||||++|++||.+|++.|++|+|||++ +.+||.|..
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~------~~iGG~~~t 42 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKR------NHIGGNAYT 42 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSS------SSSSGGGCE
T ss_pred CccEEEECCcHHHHHHHHHHHhCCCcEEEEECC------CCcccceEE
Confidence 389999999999999999999999999999998 899999854
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.25 E-value=4.5e-07 Score=92.03 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=31.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
..+|+||||||+|+++|..|++.|++|+||||.+
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3679999999999999999999999999999973
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.18 E-value=6.6e-06 Score=84.79 Aligned_cols=156 Identities=18% Similarity=0.252 Sum_probs=103.9
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC---------------------c----------------ccHHH
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN---------------------T----------------VDEEI 613 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~---------------------~----------------~d~~~ 613 (866)
-+|+|||+|++|+-+|..|.+.|.+|+++++.+.+.. . -.+++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~ 87 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 87 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence 3699999999999999999999999999998765311 0 01467
Q ss_pred HHHHHHHHHHcCC--EEEeCceEEEEEEcC--CeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeee
Q psy9583 614 AKKAFHLLNKQGL--NIILNTKIHDIKINK--ENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKV 689 (866)
Q Consensus 614 ~~~l~~~l~~~GV--~i~~~~~v~~i~~~~--~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~ 689 (866)
.+++++..++.++ .++++++|+++..++ +.+.+.+. ++. +..+|.+|+|+|.-..... ..-.++++
T Consensus 88 ~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~--~~~------~~~~~~~i~atG~ls~~~~--p~~~~~~i 157 (298)
T d1w4xa1 88 LRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTN--HGD------RIRARYLIMASGQLSDALT--GALFKIDI 157 (298)
T ss_dssp HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEET--TCC------EEEEEEEEECCCSCCCCTT--HHHHTSEE
T ss_pred HHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccc--ccc------ccccceEEEeecccccccC--Cccccccc
Confidence 7888888888888 599999999998543 45677664 555 7899999999996433222 11223343
Q ss_pred cCCCcEEeC----CCCCC-------CCCCEEEe-cccCC--CCCcHHHHHHHHHHHHHHHh
Q psy9583 690 NENNFIIVN----DNCET-------NIPNIYAI-GDVVR--GPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 690 ~~~G~i~Vd----~~l~T-------s~~~VyA~-GD~a~--~~~~~~~A~~~g~~aa~~i~ 736 (866)
..++.+... +..+| +.||.|.+ |--+. .......+-.|+..+++.|.
T Consensus 158 ~g~~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~ 218 (298)
T d1w4xa1 158 RGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIA 218 (298)
T ss_dssp ECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHH
Confidence 222222221 11122 67999997 43332 11244556677777777653
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.14 E-value=3.1e-07 Score=87.87 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=27.8
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+|+|||||++|+.+|..|++.|.++.+++..
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~ 35 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVG 35 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEe
Confidence 56999999999999999999999887666554
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.12 E-value=8.9e-06 Score=86.20 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=30.6
Q ss_pred ccceeeecCCccHHHHHHHHHH----CCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQ----LGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~----~g~~V~liek~ 422 (866)
++||||||+|+||++||++|++ .|++|+||||.
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~ 57 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA 57 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence 4899999999999999999975 69999999997
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=8.4e-07 Score=93.89 Aligned_cols=41 Identities=29% Similarity=0.514 Sum_probs=37.7
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCcc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~ 435 (866)
++.||+|||||+|||+||..|++.|++|+|+|++ +.+||.+
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~------~r~GGr~ 44 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR------DRVGGRV 44 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS------SSSBTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC------CCCcccE
Confidence 4678999999999999999999999999999998 7788865
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.06 E-value=1.1e-06 Score=91.78 Aligned_cols=41 Identities=29% Similarity=0.482 Sum_probs=38.3
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCT 436 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~ 436 (866)
+++|+|||||++|++||..|++.|++|+|+|++ +++||.|.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~------~~iGG~~~ 42 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQR------DHIGGNSY 42 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS------SSSSGGGC
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECC------CCCcCeee
Confidence 478999999999999999999999999999998 89999873
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.94 E-value=2.4e-06 Score=82.27 Aligned_cols=40 Identities=25% Similarity=0.483 Sum_probs=35.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCC-eEEEEeccCCCcccccCCCcc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEWKDNEENFALGGTC 435 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~~~~~~~~~~GG~~ 435 (866)
..+|+||||||+||+||..|+++|+ +|+||||. +.+||.+
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~------~~~gg~~ 44 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQ------EYVGGLS 44 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS------SSCSTHH
T ss_pred CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec------Ccccchh
Confidence 4789999999999999999999998 59999998 6777754
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.91 E-value=3.8e-05 Score=77.88 Aligned_cols=33 Identities=30% Similarity=0.607 Sum_probs=31.0
Q ss_pred cceeeecCCccHHHHHHHHHHCCC-eEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGF-KTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~~ 423 (866)
+||+|||||+||+++|..|++.|. +|+|+||.+
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 689999999999999999999995 899999984
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=97.88 E-value=4.1e-06 Score=84.37 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=34.0
Q ss_pred hcccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 386 ~m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+|+.+.||+|||||++|+++|++|+++|++|+||||+
T Consensus 2 ~~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 2 MMHSQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3555689999999999999999999999999999996
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=3.8e-05 Score=75.39 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=78.7
Q ss_pred CCCceEecchhhhccc------------cCCCeEEEECCcHHHHHHHHHHHhc--------------------C-CcEEE
Q psy9583 552 FDENLILSNKGALEMI------------NVPKKLCIIGAGVIGLEIGSIWRRL--------------------G-SEVTI 598 (866)
Q Consensus 552 ~~~~~~~t~~~~~~~~------------~~~~~vvVIGgG~~glE~A~~l~~~--------------------g-~~Vtl 598 (866)
.+...++...++..+. ..+++|+|||+|.+|+++|..+.+. | .+|++
T Consensus 9 edl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~i 88 (225)
T d1cjca1 9 EELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWI 88 (225)
T ss_dssp TTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEE
T ss_pred CCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEE
Confidence 3455677666665432 1368999999999999999999873 4 57999
Q ss_pred EecCCcCCCcc-cHHHHH-----------------------------------HHHHHHH--------------HcCCEE
Q psy9583 599 LEMSSNFLNTV-DEEIAK-----------------------------------KAFHLLN--------------KQGLNI 628 (866)
Q Consensus 599 i~~~~~~l~~~-d~~~~~-----------------------------------~l~~~l~--------------~~GV~i 628 (866)
+.|+...-..+ .+++.+ .+.+.++ .+++.|
T Consensus 89 v~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 168 (225)
T d1cjca1 89 VGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGL 168 (225)
T ss_dssp ECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEE
T ss_pred EEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccccccccccccceEE
Confidence 99887654332 333322 1111111 246889
Q ss_pred EeCceEEEEEEcCCe--EE-EEEee----CC---CC--ccceeEEEeccEEEEeecc
Q psy9583 629 ILNTKIHDIKINKEN--VL-INYSN----KS---TN--VKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 629 ~~~~~v~~i~~~~~~--~~-v~~~~----~~---g~--~~~~~~~~~~D~vi~a~G~ 673 (866)
++...+.++..++++ +. +.+.. .+ +. ..++...++||+||.|+|+
T Consensus 169 ~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 169 RFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp ECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred EeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence 999999999887532 22 22221 11 11 1345678999999999996
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.85 E-value=3.3e-06 Score=88.00 Aligned_cols=50 Identities=32% Similarity=0.368 Sum_probs=43.1
Q ss_pred ccceeeecCCccHHHHHHHHHHC--CCeEEEEeccCCCcccccCCCccceeccccchh
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQL--GFKTACIDEWKDNEENFALGGTCTNVGCIPSKA 445 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~--g~~V~liek~~~~~~~~~~GG~~~~~g~~P~~~ 445 (866)
++||+||||||||++||..|+++ |++|+|+|+. +.+||.+...++.+.+.
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~ 101 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS------VAPGGGSWLGGQLFSAM 101 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS------SSCCTTTTCCGGGCCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcC------CCCcceeEecCEeCCHH
Confidence 58999999999999999999964 9999999998 68899887777665443
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.77 E-value=9.3e-05 Score=74.20 Aligned_cols=99 Identities=17% Similarity=0.215 Sum_probs=74.5
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc------ccHHHHHHHH-------------------------
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT------VDEEIAKKAF------------------------- 618 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~------~d~~~~~~l~------------------------- 618 (866)
.+||+|||+|+.|+-+|..|++.|.+|+++++.+..... +.+.....+.
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 83 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence 579999999999999999999999999999987654321 2222221111
Q ss_pred -------------------HH-HHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccC
Q psy9583 619 -------------------HL-LNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPN 676 (866)
Q Consensus 619 -------------------~~-l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~ 676 (866)
.. -...++.++++..++++...++.+.+++. +|. ++.+|.++.|.|....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~--dG~------~~~~d~~v~adG~~s~ 153 (265)
T d2voua1 84 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFS--DGT------KAEANWVIGADGGASV 153 (265)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEET--TSC------EEEESEEEECCCTTCH
T ss_pred eecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEEC--CCC------EEEEEEEecccccccc
Confidence 11 12346778899999999998888887775 776 8999999999996543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.75 E-value=0.00019 Score=72.46 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=102.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcCCC-----cccHHHHHH----------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNFLN-----TVDEEIAKK---------------------------- 616 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~l~-----~~d~~~~~~---------------------------- 616 (866)
=+|+|||||+.|+-+|..|++.|. +|+++++.+.+.. .+.+.....
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 81 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence 479999999999999999999995 8999999876532 111111111
Q ss_pred ----------------------------HHH--HHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccE
Q psy9583 617 ----------------------------AFH--LLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDK 666 (866)
Q Consensus 617 ----------------------------l~~--~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~ 666 (866)
... .....++.+.+++.++.+..+++++.+.+.+.++. ..++.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~~g~~~----~~~~~ad~ 157 (288)
T d3c96a1 82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGK----PQALGADV 157 (288)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTEEEEEEEETTSC----EEEEEESE
T ss_pred EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCcEEEEEEcCCCC----eEEEeece
Confidence 111 12235788899999999998888998888866554 56899999
Q ss_pred EEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecccCCC--C---CcHHHHHHHHHHHHHHHhC
Q psy9583 667 LLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGDVVRG--P---MLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 667 vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~~--~---~~~~~A~~~g~~aa~~i~g 737 (866)
++.|-|........ . .................++..+||++.. | .-...|+..+...+..+..
T Consensus 158 vi~ADG~~S~vr~~----~----~~~~~~~~~~~~~~~~~~~~~~gda~h~~~p~~g~G~~~ai~d~~~l~~~l~~ 225 (288)
T d3c96a1 158 LVGADGIHSAVRAH----L----HPDQRPLRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALAR 225 (288)
T ss_dssp EEECCCTTCHHHHH----H----CTTCCCCCCCCSCCCBTTEEECTHHHHCCCSSTTCTHHHHHHHHHHHHHHHHH
T ss_pred eeccCCccceeeee----e----ccccccccccccccccCcceecccccceeCCccccchhhhhhhHHHHHHHHhh
Confidence 99999975432110 0 0000011111222345678999999842 1 3466788888888877753
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=97.73 E-value=7.6e-06 Score=77.78 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=29.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+.||||||||++|+.+|..|+++|.++++++..
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~ 35 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG 35 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence 468999999999999999999999998888765
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.70 E-value=7.6e-06 Score=87.27 Aligned_cols=36 Identities=33% Similarity=0.606 Sum_probs=34.1
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
|+.+|||||||+|+||+.+|.+|++.|++|+|+|++
T Consensus 1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG 36 (379)
T d2f5va1 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIG 36 (379)
T ss_dssp CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence 556799999999999999999999999999999997
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00027 Score=68.62 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=40.0
Q ss_pred cCCCceEecchhhhccc------------cCCCeEEEECCcHHHHHHHHHHH--------------------hcCC-cEE
Q psy9583 551 KFDENLILSNKGALEMI------------NVPKKLCIIGAGVIGLEIGSIWR--------------------RLGS-EVT 597 (866)
Q Consensus 551 ~~~~~~~~t~~~~~~~~------------~~~~~vvVIGgG~~glE~A~~l~--------------------~~g~-~Vt 597 (866)
+.+...++...++..+. ..+++|+|||+|.+|+++|..+. +.|. +|+
T Consensus 8 Gedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~ 87 (216)
T d1lqta1 8 GEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVV 87 (216)
T ss_dssp TTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEE
T ss_pred CCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEE
Confidence 33555677666665432 13689999999999999998887 4454 699
Q ss_pred EEecCCcC
Q psy9583 598 ILEMSSNF 605 (866)
Q Consensus 598 li~~~~~~ 605 (866)
++.|+...
T Consensus 88 iv~RRg~~ 95 (216)
T d1lqta1 88 IVGRRGPL 95 (216)
T ss_dssp EECSSCGG
T ss_pred EEEECChH
Confidence 99887654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=97.58 E-value=0.00028 Score=72.34 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 615 KKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 615 ~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
..+.+.+++.|++++.+++|+++..++++++...+ .+| +++||.||+|+|.-.
T Consensus 152 ~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T-~~g-------~i~a~~VV~aaG~~s 204 (305)
T d1pj5a2 152 QLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQT-ADG-------VIPADIVVSCAGFWG 204 (305)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEE-TTE-------EEECSEEEECCGGGH
T ss_pred hhHHhhhhcccccccCCceEEEEEEeCCEEEEEec-cce-------eEECCEEEEecchhH
Confidence 33445666789999999999999998887653332 233 799999999999653
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=97.56 E-value=0.00056 Score=70.43 Aligned_cols=92 Identities=20% Similarity=0.242 Sum_probs=64.7
Q ss_pred HHHcCCEEEeCceEEEEEEcCCeEEEE--EeeCCCCccceeEEEeccEEEEeecc-----ccCCC--CC------Ccccc
Q psy9583 621 LNKQGLNIILNTKIHDIKINKENVLIN--YSNKSTNVKTEIITSIFDKLLIAIGR-----IPNTN--NL------NIDKI 685 (866)
Q Consensus 621 l~~~GV~i~~~~~v~~i~~~~~~~~v~--~~~~~g~~~~~~~~~~~D~vi~a~G~-----~p~~~--~l------~l~~~ 685 (866)
.+..+|+++.++.+.++..+++.+.-. +...+|+ ...+.++.||+|||- ...+. .. ....+
T Consensus 145 ~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~----~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~a 220 (311)
T d1kf6a2 145 LQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGT----LVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALSH 220 (311)
T ss_dssp TTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTE----EEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTT
T ss_pred HccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCc----EEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHhc
Confidence 344579999999999998887766422 2224554 457889999999983 22211 10 02345
Q ss_pred CeeecCCCcEEeCCCCCCCCCCEEEecccCC
Q psy9583 686 GLKVNENNFIIVNDNCETNIPNIYAIGDVVR 716 (866)
Q Consensus 686 gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD~a~ 716 (866)
|.++.+-.+|.++.+..+..+++|+.|++.+
T Consensus 221 Ga~l~dme~iq~~p~~~~~~~~~~~~~~~~~ 251 (311)
T d1kf6a2 221 GVPLRDMGGIETDQNCETRIKGLFAVGECSS 251 (311)
T ss_dssp TCCEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred ccceeecccccccccchhcccCCCcCcceee
Confidence 6666666789999999999999999999874
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=97.53 E-value=8.5e-05 Score=74.71 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=32.2
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
-.++|||+|+.|+++|..++++|.+|+++++.+.+
T Consensus 43 yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l 77 (261)
T d1mo9a1 43 YDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL 77 (261)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 36999999999999999999999999999987765
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.46 E-value=2.8e-05 Score=82.02 Aligned_cols=37 Identities=32% Similarity=0.570 Sum_probs=32.5
Q ss_pred ccccceeeecCCccHHHHHHHHH-----HCCCeEEEEeccCC
Q psy9583 388 NKNFDVIVIGAGPGGYVASIRLA-----QLGFKTACIDEWKD 424 (866)
Q Consensus 388 ~~~~dVvIIGgG~AGl~aA~~L~-----~~g~~V~liek~~~ 424 (866)
...|||+||||||+|+++|..|+ +.|++|+||||.+.
T Consensus 5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 34699999999999999999996 46999999999743
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.45 E-value=0.00013 Score=71.78 Aligned_cols=92 Identities=10% Similarity=0.206 Sum_probs=65.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcCCC----------cccHHHHHHHHHHHHHcCCEEEeCceEEEEE
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNFLN----------TVDEEIAKKAFHLLNKQGLNIILNTKIHDIK 638 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~l~----------~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 638 (866)
.+|+|||+|+.|+.+|..|.+. |.+|+++++.+.+.. .....+.......+++.|++++.++.|..
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-- 79 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGR-- 79 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTT--
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCc--
Confidence 3799999999999999999775 779999999987631 12345556667778889999998887611
Q ss_pred EcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 639 INKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 639 ~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
+ +.+. .....+|.+++|+|..+....
T Consensus 80 ---~---~~~~---------~l~~~~d~v~~a~Ga~~~~~~ 105 (230)
T d1cjca2 80 ---D---VTVQ---------ELQDAYHAVVLSYGAEDKSRP 105 (230)
T ss_dssp ---T---BCHH---------HHHHHSSEEEECCCCCEECCC
T ss_pred ---c---ccHH---------HHHhhhceEEEEeeccccccc
Confidence 0 0000 001257999999998765543
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.42 E-value=0.00044 Score=67.10 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=72.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCc-------------------------------------cc----
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNT-------------------------------------VD---- 610 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~-------------------------------------~d---- 610 (866)
.|+|||+|+.|+++|..++++|.+|+++++++.+... ..
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 84 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAAM 84 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHHH
Confidence 5899999999999999999999999999987765210 00
Q ss_pred --------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCc
Q psy9583 611 --------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNI 682 (866)
Q Consensus 611 --------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l 682 (866)
..+...+...+...+++++..... +. ............. ...+.+|.||+|||.+|.-.....
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~--~~-~~~~~~~~~~~~~------~~~~~a~~VIiATGs~~~gr~p~~ 155 (221)
T d1dxla1 85 MGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK--FV-SPSEISVDTIEGE------NTVVKGKHIIIATGSDVKGRTPFT 155 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE--EE-ETTEEEECCSSSC------CEEEECSEEEECCCEEECCEEECC
T ss_pred HHHHHHHHHHHhhHHHHhhhcCCeEEEEeccc--cc-ccccccccccccc------ccccccceEEEeECCCccCccccC
Confidence 112333445566778887754422 11 1222222222112 347899999999999885322112
Q ss_pred cccCeeecCCCcEEeCCCC
Q psy9583 683 DKIGLKVNENNFIIVNDNC 701 (866)
Q Consensus 683 ~~~gl~~~~~G~i~Vd~~l 701 (866)
+. +.+++-| +.+|+..
T Consensus 156 ~~--l~l~~~g-v~~~~~G 171 (221)
T d1dxla1 156 SG--LNLDKIG-VETDKLG 171 (221)
T ss_dssp TT--SCCTTTT-CCBCSSS
T ss_pred CC--CChHhcC-ceEcCCC
Confidence 32 3333334 6666543
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.42 E-value=0.00062 Score=62.17 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=28.5
Q ss_pred cceeee--cCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVI--GAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvII--GgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..++|+ |||+.|+.+|..|+++|.+|+|+++.
T Consensus 40 ~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~ 73 (156)
T d1djqa2 40 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV 73 (156)
T ss_dssp SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESS
T ss_pred CceEEEecCCChHHHHHHHHHHHcCCeEEEEecC
Confidence 445655 99999999999999999999999986
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.28 E-value=0.0006 Score=57.89 Aligned_cols=88 Identities=8% Similarity=0.061 Sum_probs=57.8
Q ss_pred Eecchhhhcc-ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeCceEE
Q psy9583 557 ILSNKGALEM-INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILNTKIH 635 (866)
Q Consensus 557 ~~t~~~~~~~-~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~~~v~ 635 (866)
++++.++.+. ...+|+|+|||+|.+|+++|..|++.+++++++.+++..... ..+ +.....+.
T Consensus 18 i~Hs~~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~~--------------~~~--~~~~~~i~ 81 (107)
T d2gv8a2 18 VLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQ--------------NES--LQQVPEIT 81 (107)
T ss_dssp EEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSCB--------------CSS--EEEECCEE
T ss_pred EEECCcCcchhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccccc--------------ccc--ceecCCee
Confidence 4444433332 235899999999999999999999999998888877654321 111 22234456
Q ss_pred EEEEcCCeEEEEEeeCCCCccceeEEEe-ccEEEEe
Q psy9583 636 DIKINKENVLINYSNKSTNVKTEIITSI-FDKLLIA 670 (866)
Q Consensus 636 ~i~~~~~~~~v~~~~~~g~~~~~~~~~~-~D~vi~a 670 (866)
++...+.. +.+. +|. .+. .|.||+|
T Consensus 82 ~~~~~~~~--v~~~--dG~------~~~~vD~Ii~C 107 (107)
T d2gv8a2 82 KFDPTTRE--IYLK--GGK------VLSNIDRVIYC 107 (107)
T ss_dssp EEETTTTE--EEET--TTE------EECCCSEEEEC
T ss_pred EEecCCCE--EEEc--CCC------EEeCCCEEEEC
Confidence 66544433 4454 665 554 6999987
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.11 E-value=0.0018 Score=62.43 Aligned_cols=95 Identities=19% Similarity=0.246 Sum_probs=63.5
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCC-cC---------CCc----cc----------HHHHHHHHHHHHH-cCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS-NF---------LNT----VD----------EEIAKKAFHLLNK-QGL 626 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~-~~---------l~~----~d----------~~~~~~l~~~l~~-~GV 626 (866)
.|+|||||+.|+|.|...++.|.++.+++.+. .+ ... +. ......+.+.+++ .++
T Consensus 4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~nL 83 (230)
T d2cula1 4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRPL 83 (230)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTTE
T ss_pred cEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcCH
Confidence 58999999999999999999999999997642 11 000 00 1123334444443 378
Q ss_pred EEEeCceEEEEEEcCCeEE-EEEeeCCCCccceeEEEeccEEEEeecccc
Q psy9583 627 NIILNTKIHDIKINKENVL-INYSNKSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 627 ~i~~~~~v~~i~~~~~~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
.++.+ .|.++..+++.+. |.+ .+|. .+.+..||++||.--
T Consensus 84 ~i~q~-~V~dli~e~~~v~gV~t--~~G~------~~~AkaVILtTGTFL 124 (230)
T d2cula1 84 HLFQA-TATGLLLEGNRVVGVRT--WEGP------PARGEKVVLAVGSFL 124 (230)
T ss_dssp EEEEC-CEEEEEEETTEEEEEEE--TTSC------CEECSEEEECCTTCS
T ss_pred HHHhc-cceeeEecccceeeEEe--cccc------EEEEeEEEEccCcce
Confidence 88755 4566655555544 333 3665 799999999998543
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.0028 Score=65.55 Aligned_cols=32 Identities=22% Similarity=0.313 Sum_probs=29.0
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
.|+|||+|..|+-.|..+++.|.+|+++++.+
T Consensus 9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~ 40 (330)
T d1neka2 9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVF 40 (330)
T ss_dssp SCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 58999999999999999999999999998643
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00035 Score=64.39 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEE
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTA 417 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~ 417 (866)
..+|+|||||..|+-+|..+++.|.+++
T Consensus 29 gkrVvVIGgG~~g~d~a~~~~r~G~~~~ 56 (162)
T d1ps9a2 29 GNKVAIIGCGGIGFDTAMYLSQPGESTS 56 (162)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred CCceEEEcCchhHHHHHHHHHHcCCccc
Confidence 3689999999999999999999997643
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.10 E-value=0.00011 Score=77.96 Aligned_cols=34 Identities=38% Similarity=0.601 Sum_probs=32.3
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.++||||||+|++|+.+|.+|++.|++|+|+|++
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3699999999999999999999999999999986
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.03 E-value=0.00088 Score=67.93 Aligned_cols=102 Identities=17% Similarity=0.255 Sum_probs=71.3
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC-------Cccc---------------------------------
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL-------NTVD--------------------------------- 610 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l-------~~~d--------------------------------- 610 (866)
.+|+|||||+.|+-+|..|++.|.+|+++++.+... ..+.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~ 82 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence 379999999999999999999999999999875310 0011
Q ss_pred --------------------HHHHHHHHHHHHHcCCEEEeCceEEEE-EEcCCeEEEEEeeCCCCccceeEEEeccEEEE
Q psy9583 611 --------------------EEIAKKAFHLLNKQGLNIILNTKIHDI-KINKENVLINYSNKSTNVKTEIITSIFDKLLI 669 (866)
Q Consensus 611 --------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i-~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~ 669 (866)
..+...+.+.+++.+..++........ ..+++.+.+.+.. +|+ ..++.+|+||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~g~----~~~i~a~~vVg 157 (292)
T d1k0ia1 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFER-DGE----RLRLDCDYIAG 157 (292)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEE-TTE----EEEEECSEEEE
T ss_pred ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEec-CCc----EEEEEeCEEEE
Confidence 223445556666677777777665544 4445566666653 333 34789999999
Q ss_pred eeccccCC
Q psy9583 670 AIGRIPNT 677 (866)
Q Consensus 670 a~G~~p~~ 677 (866)
|.|.+...
T Consensus 158 ADG~~S~v 165 (292)
T d1k0ia1 158 CDGFHGIS 165 (292)
T ss_dssp CCCTTCST
T ss_pred CCCCCCcc
Confidence 99987543
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.03 E-value=0.0013 Score=64.17 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=41.7
Q ss_pred CCCcCCCceEecchhhh-cc-ccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 548 PGVKFDENLILSNKGAL-EM-INVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 548 p~~~~~~~~~~t~~~~~-~~-~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
||.+...-.++++.++. .. ...+|+|+|||+|.+|+++|..+++.+.+++++.+.+..
T Consensus 8 pG~e~F~G~v~HS~~~~~~~~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~ 67 (235)
T d1w4xa2 8 PGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF 67 (235)
T ss_dssp TTGGGCCSEEEEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred CChhhCCCcEEecCcCCCCCCCCCCCEEEEECCCccHHHHHHHHHhhhccccccccccce
Confidence 44432233455555543 22 235899999999999999999999999999888776543
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.99 E-value=0.0002 Score=70.51 Aligned_cols=92 Identities=15% Similarity=0.202 Sum_probs=67.1
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcC-------CcEEEEecCCcCCC----------cccHHHHHHHHHHHHHcCCEEEeCc
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLG-------SEVTILEMSSNFLN----------TVDEEIAKKAFHLLNKQGLNIILNT 632 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g-------~~Vtli~~~~~~l~----------~~d~~~~~~l~~~l~~~GV~i~~~~ 632 (866)
|.+|+|||+|+.|+.+|..|.+.| .+|+++++.+.+.. ....++.+.....+...|++++++.
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 81 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence 569999999999999999999987 47999999886542 2234556666777888999999987
Q ss_pred eEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCC
Q psy9583 633 KIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTN 678 (866)
Q Consensus 633 ~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~ 678 (866)
.+... ..+. .....+|.+++|+|..+...
T Consensus 82 ~v~~~--------~~~~---------~~~~~~~~v~~atGa~~~~~ 110 (239)
T d1lqta2 82 VVGEH--------VQPG---------ELSERYDAVIYAVGAQSRGV 110 (239)
T ss_dssp CBTTT--------BCHH---------HHHHHSSEEEECCCCCEECC
T ss_pred Eeccc--------cchh---------hhhccccceeeecCCCcccc
Confidence 75210 0000 11245799999999865443
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=96.96 E-value=0.00018 Score=75.97 Aligned_cols=33 Identities=39% Similarity=0.732 Sum_probs=31.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.||+||||+|+||+.+|.+|++.|++|+|+|++
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG 34 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG 34 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence 499999999999999999999999999999997
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=96.94 E-value=0.0002 Score=75.81 Aligned_cols=33 Identities=30% Similarity=0.539 Sum_probs=31.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
.||||||+|++|+.+|.+|++.|++|+|+|++.
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence 689999999999999999999999999999973
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.92 E-value=0.00021 Score=70.40 Aligned_cols=141 Identities=21% Similarity=0.235 Sum_probs=81.9
Q ss_pred cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCccc-----------HHHHHHHHHHHHHc---CCEEEeCce
Q psy9583 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVD-----------EEIAKKAFHLLNKQ---GLNIILNTK 633 (866)
Q Consensus 568 ~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d-----------~~~~~~l~~~l~~~---GV~i~~~~~ 633 (866)
..+++|+|||||+.|+.+|..|+++|.+|+++++.+.+...+. ..........+.+. ++...
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 122 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQ---- 122 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCE----
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeee----
Confidence 4579999999999999999999999999999999887743211 12223333333332 22211
Q ss_pred EEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCCCCccccCeeecCCCcEEeCCCCCCCCCCEEEecc
Q psy9583 634 IHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNNLNIDKIGLKVNENNFIIVNDNCETNIPNIYAIGD 713 (866)
Q Consensus 634 v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~l~Ts~~~VyA~GD 713 (866)
+...... +.. .+ ..++.+|.+|+|||..+.......... .+ ... .....+++..++
T Consensus 123 ---~~~~~~~--~~~--~~------~~~~~~d~vviAtG~~~~~~~~~~~~~------~~-~~~----~~~~~~~~~~~~ 178 (233)
T d1djqa3 123 ---LALGQKP--MTA--DD------VLQYGADKVIIATGASECTLWNELKAR------ES-EWA----ENDIKGIYLIGD 178 (233)
T ss_dssp ---EECSCCC--CCH--HH------HHTSCCSEEEECCCEECCHHHHHHHHT------TH-HHH----HTTCCEEEECGG
T ss_pred ---eeccccc--ccc--hh------hhhhccceeeeccCCCccccccccccc------cc-ccc----hhhhhhhhhccc
Confidence 0000000 000 01 124678999999998876543211110 11 000 123466777776
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHhC
Q psy9583 714 VVRGPMLAHKAEEEGIMVAEHISG 737 (866)
Q Consensus 714 ~a~~~~~~~~A~~~g~~aa~~i~g 737 (866)
.. ..-....+-..|.-+|..+..
T Consensus 179 ~~-~~vvViGgG~~g~e~A~~l~~ 201 (233)
T d1djqa3 179 AE-APRLIADATFTGHRVAREIEE 201 (233)
T ss_dssp GT-SCCCHHHHHHHHHHHHHTTTS
T ss_pred cC-CceeEecCchHHHHHHHHHHh
Confidence 43 445667777777777777653
|
| >d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Protein H of glycine cleavage system species: Thermus thermophilus [TaxId: 274]
Probab=96.82 E-value=0.00081 Score=58.52 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=35.7
Q ss_pred eCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEee
Q psy9583 25 KKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62 (866)
Q Consensus 25 ~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~ 62 (866)
.++|+.|++|++++.||+.|+..+|.||.+|+|.++.-
T Consensus 43 p~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~ 80 (127)
T d1onla_ 43 PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL 80 (127)
T ss_dssp BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred CCCCchhcCCCceEEEeeccceeeccCCccceEEEEhh
Confidence 48999999999999999999999999999999988764
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.0023 Score=61.59 Aligned_cols=93 Identities=18% Similarity=0.208 Sum_probs=62.3
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC-------------------------------------ccc----
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-------------------------------------TVD---- 610 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-------------------------------------~~d---- 610 (866)
.++|||+|+.|+++|..++++|.+|.++++.. +.. .++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL 82 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence 48999999999999999999999999999753 110 000
Q ss_pred --------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 611 --------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 611 --------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..+...++..+++.||++......... ... .. .++ ..+.++.+++|+|.+|....
T Consensus 83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~---~~~----~~-~~~------~~~~~~~~iiatG~~p~ip~ 145 (217)
T d1gesa1 83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVD---AKT----LE-VNG------ETITADHILIATGGRPSHPR 145 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEE---TTE----EE-ETT------EEEEEEEEEECCCEEECCCE
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccce---eee----ec-CCC------ceeeeeeeeeecCccccCCC
Confidence 011223344567778888766543221 111 11 133 37899999999999987654
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=96.75 E-value=0.00032 Score=74.89 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=32.4
Q ss_pred cccceeeecCCccHHHHHHHHHHCC-CeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLG-FKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~ 423 (866)
+.||+||||||+||+..|.+|++.+ ++|+|+|+++
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~ 58 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF 58 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred CeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence 3599999999999999999999987 7999999984
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=96.75 E-value=0.00028 Score=74.14 Aligned_cols=36 Identities=17% Similarity=0.489 Sum_probs=32.0
Q ss_pred cccccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
+...||+||||+|+||+.+|.+|++. ++|+|+|+++
T Consensus 23 ~~~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~ 58 (351)
T d1ju2a1 23 LEGSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGS 58 (351)
T ss_dssp SEEEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSB
T ss_pred ccCCccEEEECccHHHHHHHHHhcCC-CCEEEEecCC
Confidence 34469999999999999999999986 9999999973
|
| >d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Protein H of glycine cleavage system species: Pea (Pisum sativum) [TaxId: 3888]
Probab=96.72 E-value=0.001 Score=58.18 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=35.5
Q ss_pred eCCCCeeeCCCeEEEEEecceeeEEecCCCeEEEEEee
Q psy9583 25 KKEGELVVRNENLIDIETDKVILELPAPQDGIINKIII 62 (866)
Q Consensus 25 ~~~G~~v~~g~~l~~ve~~k~~~~i~~~~~G~~~~~~~ 62 (866)
.++|+.|++||+++.||+.|++.++.||.+|+|.++.-
T Consensus 44 p~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~ 81 (131)
T d1hpca_ 44 PEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNT 81 (131)
T ss_dssp CCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECT
T ss_pred CCCCccccCCCceEEEEeecccccccCCcchhheeehh
Confidence 48999999999999999999999999999999987754
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=96.64 E-value=0.00039 Score=74.06 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=32.0
Q ss_pred cccceeeecCCccHHHHHHHHHHCC-CeEEEEeccC
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLG-FKTACIDEWK 423 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g-~~V~liek~~ 423 (866)
+.||+||||||+||+..|.+|++.+ ++|+|+|+++
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~ 51 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS 51 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence 4599999999999999999999975 8999999984
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.63 E-value=0.0052 Score=59.19 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=29.6
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
.++|||||+.|+.+|..+++.|.+|.++++..
T Consensus 5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 48999999999999999999999999998753
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.62 E-value=0.0028 Score=61.14 Aligned_cols=33 Identities=27% Similarity=0.286 Sum_probs=30.4
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~ 602 (866)
...++|||+|+.|+++|..++++|.+|+++++.
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 357999999999999999999999999999865
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.0048 Score=60.11 Aligned_cols=103 Identities=16% Similarity=0.162 Sum_probs=65.4
Q ss_pred eEEEECCcHHHHHHHHHHHhcC---CcEEEEecCCcCC---------------------------C-----------ccc
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLG---SEVTILEMSSNFL---------------------------N-----------TVD 610 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g---~~Vtli~~~~~~l---------------------------~-----------~~d 610 (866)
+|+|||+|+.|+.+|...+++| .+|+++++.. +. . .++
T Consensus 3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~-~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d 81 (233)
T d1xdia1 3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKIS 81 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC-CCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceee
Confidence 7999999999999998887766 4689998643 10 0 011
Q ss_pred ------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 611 ------------EEIAKKAFHLLNKQGLNIILNTKIHDIKIN-KENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 611 ------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
......+...++..||+++.+.....-... .....+.+...+|. ..++++|.+++|+|.+|..
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~G~~~~~~~~~~~~~~~v~v~~~dg~----~~~i~ad~viiAtG~~p~~ 157 (233)
T d1xdia1 82 LPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGS----TSEHEADVVLVATGASPRI 157 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSC----EEEEEESEEEECCCEEECC
T ss_pred eeeeccccceeeeeeecceehhhcccceeEEECcccccccccccccceEEEEecCCc----eeeeecceeeeecCccccc
Confidence 011123456677889999876432111000 11223444444554 5689999999999999987
Q ss_pred CC
Q psy9583 678 NN 679 (866)
Q Consensus 678 ~~ 679 (866)
..
T Consensus 158 ~~ 159 (233)
T d1xdia1 158 LP 159 (233)
T ss_dssp CG
T ss_pred cc
Confidence 54
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.53 E-value=0.0032 Score=56.88 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=28.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCe-EEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFK-TACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~-V~liek~ 422 (866)
.+|+|||||-.|+-+|..+.++|.+ |+++.+.
T Consensus 46 ~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr 78 (153)
T d1gtea3 46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRK 78 (153)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred CEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence 5799999999999999999999865 8899875
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.48 E-value=0.00039 Score=71.60 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=32.1
Q ss_pred CCeEEEECCcHHHHHHHHHHHhc--CCcEEEEecCCcC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRL--GSEVTILEMSSNF 605 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~--g~~Vtli~~~~~~ 605 (866)
...|+|||+|+.|+.+|..|+++ |.+|+++++.+.+
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence 46799999999999999999965 8999999998765
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.42 E-value=0.00018 Score=71.05 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=26.2
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEec
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDE 421 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek 421 (866)
+|+|||||++|+++|++|+++|++|+++|+
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~ 31 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLD 31 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence 599999999999999999999987655554
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.40 E-value=0.05 Score=55.98 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=30.9
Q ss_pred CCCCCCCCCCEEEecccCC--CCCcHHHHHHHHHHHHHHHh
Q psy9583 698 NDNCETNIPNIYAIGDVVR--GPMLAHKAEEEGIMVAEHIS 736 (866)
Q Consensus 698 d~~l~Ts~~~VyA~GD~a~--~~~~~~~A~~~g~~aa~~i~ 736 (866)
+....|+.|++|++||+.+ +.++...+...|+++++++.
T Consensus 278 ~~~~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~ 318 (356)
T d1jnra2 278 KYNRMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAV 318 (356)
T ss_dssp CCTTBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccchhcCCccccCccccccccchhHHHHH
Confidence 3445578899999999886 34577888888999998876
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.0049 Score=59.27 Aligned_cols=96 Identities=21% Similarity=0.284 Sum_probs=62.5
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc------------------------------C-C----Cccc------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN------------------------------F-L----NTVD------ 610 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~------------------------------~-l----~~~d------ 610 (866)
.++|||+|+.|+++|..+++.|.+|.++++... + . ..++
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE 84 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence 489999999999999999999999999986431 0 0 0011
Q ss_pred ------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCCCC
Q psy9583 611 ------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNTNN 679 (866)
Q Consensus 611 ------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~~~ 679 (866)
..+.....+.+++.||+++.+.-... ......+.. .. ..+.++.+++++|..|..+.
T Consensus 85 ~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~---~~~~~~~~~---~~------~~~~~~~~~iatG~~p~vp~ 147 (221)
T d3grsa1 85 KRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFT---SDPKPTIEV---SG------KKYTAPHILIATGGMPSTPH 147 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEESCCEEC---SCSSCEEEE---TT------EEEECSCEEECCCEEECCCC
T ss_pred hhheEEeeeccchhhhhccCceEEEEEeeeec---cccceeeee---ec------cccccceeEEecCccccCCC
Confidence 11223334567788998876643211 111111111 11 37889999999999998754
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.23 E-value=0.016 Score=56.04 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=66.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC--------------------------------------------
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN-------------------------------------------- 607 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~-------------------------------------------- 607 (866)
.++|||+|+.|+.+|..++++|.+|.++++.+....
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~ 84 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT 84 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence 589999999999999999999999999986442110
Q ss_pred -ccc------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccc
Q psy9583 608 -TVD------------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRI 674 (866)
Q Consensus 608 -~~d------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~ 674 (866)
..+ ..+...+...|++.+|.++.+... +. ......+... .+. ...+.++.+++++|.+
T Consensus 85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~G~~~--~~-~~~~~~v~~~--~~~----~~~i~a~~ivi~~G~~ 155 (235)
T d1h6va1 85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYENAYGK--FI-GPHKIMATNN--KGK----EKVYSAERFLIATGER 155 (235)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCEEE--EE-ETTEEEEECT--TSC----EEEEEEEEEEECCCEE
T ss_pred eeechhhhhheeeeeeeeccchhhhhhhccCceEEEeEEe--ec-cccceecccc--ccc----ccccccccceeecCCC
Confidence 001 012223345667788988866543 22 2233333322 333 4578999999999999
Q ss_pred cCCCC
Q psy9583 675 PNTNN 679 (866)
Q Consensus 675 p~~~~ 679 (866)
|....
T Consensus 156 p~~~~ 160 (235)
T d1h6va1 156 PRYLG 160 (235)
T ss_dssp ECCCS
T ss_pred ceeEE
Confidence 97654
|
| >d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=95.99 E-value=0.0038 Score=48.96 Aligned_cols=35 Identities=29% Similarity=0.596 Sum_probs=32.6
Q ss_pred eEEecCCCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 47 LELPAPQDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 47 ~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
-+|.||..|+|.++++++||.|..|++|+.++...
T Consensus 9 ~~v~ap~~G~v~~~~V~~Gd~V~~G~~l~~vE~~K 43 (77)
T d1dcza_ 9 GEIPAPLAGTVSKILVKEGDTVKAGQTVLVLEAMK 43 (77)
T ss_dssp SEEEBSSSCEEEEECCCTTCEECTTSEEEEEEETT
T ss_pred CEEECCCCcEEEEEEcCCCCEEeCCCeEEEEEccC
Confidence 37999999999999999999999999999999754
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.017 Score=50.05 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=31.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+|||||-+.+..|..|++...+|+||-+.
T Consensus 30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~ 62 (126)
T d1fl2a2 30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 62 (126)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSS
T ss_pred CceEEEEeCCHHHHHHHHhhhccCCceEEEecc
Confidence 588999999999999999999999999999875
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.92 E-value=0.028 Score=53.63 Aligned_cols=97 Identities=23% Similarity=0.233 Sum_probs=63.6
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC-----------------------------------CCccc-----
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF-----------------------------------LNTVD----- 610 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~-----------------------------------l~~~d----- 610 (866)
..++|||+|+.|+++|..+++.|.+|+++++...- ...++
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ 83 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence 46899999999999999999999999999875410 00111
Q ss_pred -------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEeeCCCCccceeEEEeccEEEEeeccccCC
Q psy9583 611 -------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSNKSTNVKTEIITSIFDKLLIAIGRIPNT 677 (866)
Q Consensus 611 -------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~~~~~~D~vi~a~G~~p~~ 677 (866)
..+...+...++..||+++.+.. .+.. .....+... .+ ...+.+|.+++++|..|..
T Consensus 84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~G~a--~f~~-~~~~~v~~~--~~-----~~~~~~~~iiIa~g~~p~~ 147 (223)
T d1ebda1 84 EWKASVVKKLTGGVEGLLKGNKVEIVKGEA--YFVD-ANTVRVVNG--DS-----AQTYTFKNAIIATGSRPIE 147 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEESEE--EEEE-TTEEEEEET--TE-----EEEEECSEEEECCCEEECC
T ss_pred hHHHHHHHHHHhhHHHhhhccceeeeccEE--EEcc-Ccccceecc--cc-----ceEEecccEEEEcCCCccc
Confidence 11223334556678898887642 1222 223333332 22 3478999999999998864
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.77 E-value=0.0035 Score=64.41 Aligned_cols=40 Identities=35% Similarity=0.544 Sum_probs=36.3
Q ss_pred cccCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 566 MINVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 566 ~~~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
....+|+|+|||+|+.|+-+|..|++.|.+|+++++.+++
T Consensus 26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~ 65 (370)
T d2iida1 26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP 65 (370)
T ss_dssp CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 3456899999999999999999999999999999998765
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=95.75 E-value=0.051 Score=53.96 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=70.3
Q ss_pred CCCeEEEECCcHHHHHHHHHHHh-cCCcEEEEecCCcCCC----------c--cc-------------------------
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRR-LGSEVTILEMSSNFLN----------T--VD------------------------- 610 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~-~g~~Vtli~~~~~~l~----------~--~d------------------------- 610 (866)
....|+|||+|+.|+.+|..|++ .|.+|+++++++.+.. . ..
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 111 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKH 111 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceecc
Confidence 34679999999999999999987 5999999999875421 0 00
Q ss_pred --HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeEEEEEee-------CCCCccceeEEEeccEEEEeecccc
Q psy9583 611 --EEIAKKAFHLLNKQGLNIILNTKIHDIKINKENVLINYSN-------KSTNVKTEIITSIFDKLLIAIGRIP 675 (866)
Q Consensus 611 --~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~-------~~g~~~~~~~~~~~D~vi~a~G~~p 675 (866)
..+...+.+.++..++.+..++.+..+...++.+.-.... ...........+.++.++.++|...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~ 185 (278)
T d1rp0a1 112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG 185 (278)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred cHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence 1222333445556678888888888777666554322211 0111112335788999999999654
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=95.62 E-value=0.0044 Score=62.74 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=34.3
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l 606 (866)
+|+|+|||+|+.|+-+|..|++.|.+|+++++++++.
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~G 37 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAG 37 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 4899999999999999999999999999999987753
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.57 E-value=0.0054 Score=50.16 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=31.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
..+|+|+|.|-+|+++|..|.+.|.+|+++|...
T Consensus 5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~ 38 (93)
T d2jfga1 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM 38 (93)
T ss_dssp TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence 3679999999999999999999999999999864
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.05 Score=46.86 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=31.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+|||||-+++..|..|++...+|+++-|.
T Consensus 27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~ 59 (126)
T d1trba2 27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR 59 (126)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeec
Confidence 478999999999999999999999999999876
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.84 E-value=0.012 Score=60.13 Aligned_cols=38 Identities=32% Similarity=0.495 Sum_probs=35.5
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~ 607 (866)
.|+|+|||+|++|+-+|..|++.|.+|+++++++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG 39 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 39 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcC
Confidence 48999999999999999999999999999999998764
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.76 E-value=0.01 Score=54.72 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=30.7
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..|+|||+|..|..+|.+|.+.|++|+|+||.
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~ 34 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT 34 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 67999999999999999999999999999986
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.013 Score=60.11 Aligned_cols=37 Identities=35% Similarity=0.518 Sum_probs=34.3
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l 606 (866)
..+|+|||+|..|+-+|..|++.|.+|+++++++++.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~G 41 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVG 41 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSB
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 5679999999999999999999999999999988764
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=94.66 E-value=0.011 Score=59.20 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=32.6
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l 606 (866)
+|+|||+|+.|+.+|..|++.|.+|+++++++++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 36 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLG 36 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSB
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence 69999999999999999999999999999988763
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.48 E-value=0.014 Score=57.25 Aligned_cols=35 Identities=23% Similarity=0.468 Sum_probs=32.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCC-cEEEEecCCcCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSSNFL 606 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~~~l 606 (866)
+|+|||||+.|+-+|..|++.|. +|+++++++++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~G 37 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIG 37 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSB
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCC
Confidence 59999999999999999999995 799999988764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.40 E-value=0.019 Score=56.21 Aligned_cols=35 Identities=37% Similarity=0.567 Sum_probs=32.1
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
..++|+|||+|..|+-.|..|+++|.+|+++++..
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 35789999999999999999999999999999853
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.39 E-value=0.013 Score=54.28 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=30.5
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.++.|||+|..|+..|..|++.|++|.+++++
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~ 33 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDID 33 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence 57999999999999999999999999999986
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.38 E-value=0.015 Score=52.50 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=31.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.-+|+|||+|.+|+.|+..+++.|.+|+++|.+
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~ 64 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN 64 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence 468999999999999999999999999999986
|
| >d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Biotinyl domain of acetyl-CoA carboxylase species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.02 Score=44.87 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=24.5
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEE
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIE 41 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve 41 (866)
..|+|.++++++||.|+.||+|++||
T Consensus 55 ~~G~v~~i~v~~G~~V~~G~~L~~ie 80 (80)
T d1bdoa_ 55 KSGTVKAILVESGQPVEFDEPLVVIE 80 (80)
T ss_dssp SCEEEEEECSCTTCEECTTCEEEEEC
T ss_pred CCeEEEEEEeCCCCEECCCCEEEEEC
Confidence 56999999999999999999999986
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=0.015 Score=56.34 Aligned_cols=35 Identities=11% Similarity=0.310 Sum_probs=33.0
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l 606 (866)
.|+|||+|..|+-+|..|++.|.+|+++++++.+.
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G 41 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 41 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence 58999999999999999999999999999998774
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.30 E-value=0.014 Score=53.31 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=31.0
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.-+|+|||+|.+|+.||..+.+.|..|+++|.+
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~ 61 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDVR 61 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEecc
Confidence 358999999999999999999999999999986
|
| >d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.82 E-value=0.018 Score=45.14 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=26.4
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecc
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDK 44 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k 44 (866)
..|+|.+|++++||.|+.||+|++||...
T Consensus 48 ~~G~v~~i~v~~G~~V~~G~~l~~ie~~~ 76 (79)
T d1iyua_ 48 KAGVVKSVSVKLGDKLKEGDAIIELEPAA 76 (79)
T ss_dssp SSSEEEEESCCTTCEEETTSEEEEEECCC
T ss_pred cccEEEEEeeCCCCEECCCCEEEEEecCc
Confidence 46999999999999999999999999753
|
| >d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.031 Score=44.51 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCeEEEEEEEeCCCCeeeCCCeEEEEEecce
Q psy9583 15 ISEATLLNWHKKEGELVVRNENLIDIETDKV 45 (866)
Q Consensus 15 ~~~g~i~~w~~~~G~~v~~g~~l~~ve~~k~ 45 (866)
-.+|+|.++++++||.|+.|++|+.|+++..
T Consensus 53 ~~~G~I~~i~v~~G~~v~~G~~l~~i~~~~~ 83 (87)
T d1k8ma_ 53 RYDGVIKKLYYNLDDIAYVGKPLVDIETEAL 83 (87)
T ss_dssp SSCEEEEEECCCSSCEECTTSEEEEEECSCC
T ss_pred CCCEEEEEEEeCCCCEECCCCEEEEEEcCCc
Confidence 3679999999999999999999999998753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.70 E-value=0.024 Score=49.40 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=30.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++|+|+|+|.-|...|..|.+.|++|++||++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d 32 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 32 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence 35999999999999999999999999999986
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.025 Score=57.05 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=33.6
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~ 607 (866)
.++|||+|++|+-+|..|++.|.+|+++++++++..
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG 38 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGG 38 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSG
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCccc
Confidence 589999999999999999999999999999998764
|
| >d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: HlyD-like secretion proteins superfamily: HlyD-like secretion proteins family: HlyD-like secretion proteins domain: Multidrug resistance protein MexA domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.56 E-value=0.01 Score=57.60 Aligned_cols=62 Identities=26% Similarity=0.367 Sum_probs=52.1
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEecc---------------------------------------------------
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETDK--------------------------------------------------- 44 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~k--------------------------------------------------- 44 (866)
..|.|.+|+|++||.|++||+|+++.+..
T Consensus 22 v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~a~~~l~ 101 (237)
T d1vf7a_ 22 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 101 (237)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcchhHHHHH
Confidence 57999999999999999999999997420
Q ss_pred ------eeeEEecCCCeEEEEEeecCCCEEecCCEEEEE
Q psy9583 45 ------VILELPAPQDGIINKIIITDGSIVTSNQVIALI 77 (866)
Q Consensus 45 ------~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~ 77 (866)
....+.||++|++.+..+.+|+.+..|.....+
T Consensus 102 ~a~~~l~~~~i~ap~~G~v~~~~~~~g~~~~~~~~~~~~ 140 (237)
T d1vf7a_ 102 QARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMA 140 (237)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTCEECTTCSSCSE
T ss_pred HHhhhhcccccccchhceeeeEEeccCcEEcCCcceeeE
Confidence 022499999999999999999999998765443
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.45 E-value=0.16 Score=43.80 Aligned_cols=33 Identities=27% Similarity=0.285 Sum_probs=31.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+|||||-+.+..|..|++.-.+|+||-|.
T Consensus 34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~ 66 (130)
T d1vdca2 34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 66 (130)
T ss_dssp TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSS
T ss_pred CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEec
Confidence 589999999999999999999999999999876
|
| >d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.023 Score=44.65 Aligned_cols=28 Identities=11% Similarity=0.127 Sum_probs=26.2
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEec
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIETD 43 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~~ 43 (866)
.+|+|.++++++||.|+.||+|+.+|++
T Consensus 50 ~~G~v~~i~v~~G~~V~~G~~l~~ie~e 77 (80)
T d1qjoa_ 50 FAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred eeEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 5699999999999999999999999975
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.032 Score=50.57 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=30.2
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++|+|||+|.-|...|..|++.|++|++++|.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~ 32 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRV 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcC
Confidence 35999999999999999999999999999986
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.044 Score=56.07 Aligned_cols=34 Identities=21% Similarity=0.516 Sum_probs=31.7
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
.|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~ 34 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 34 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 3899999999999999999999999999998765
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.042 Score=51.31 Aligned_cols=38 Identities=24% Similarity=0.521 Sum_probs=33.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN 607 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~ 607 (866)
-++|.|||+|.+|..+|..++..|.+|+++++.+..+.
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~ 41 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILA 41 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHH
Confidence 37999999999999999999999999999988765443
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=92.48 E-value=0.14 Score=43.00 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecC
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~ 602 (866)
.+++++|||+|.+|..-+..|.+.|.+|+++...
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~ 44 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 3789999999999999999999999999998653
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=92.32 E-value=0.053 Score=52.67 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=31.6
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
.|+|||+|+.|+-+|..|++.|.+|+++++++.+
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 5899999999999999999999999999987754
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.26 E-value=0.036 Score=49.48 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=30.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+++|||||..|+.-|..|.+.|.+|+||..+
T Consensus 13 gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 13 DKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999999999999999999999999999764
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=92.24 E-value=0.064 Score=51.39 Aligned_cols=34 Identities=21% Similarity=0.289 Sum_probs=31.6
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
.++|||+|+.|+.+|..++++|.+|+++++.+.+
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~ 41 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL 41 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence 5899999999999999999999999999987754
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=92.18 E-value=0.054 Score=53.41 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=30.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 49999999999999999999999999999865
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.18 E-value=0.043 Score=47.78 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=29.8
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+++|||.|..|...|..|.+.|++|++||++
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d 32 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence 5899999999999999999999999999986
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.09 E-value=0.068 Score=51.09 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=31.8
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
.|+|||+|+.|+.+|..+++.|.+|.++++.+.+
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~ 40 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL 40 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 5899999999999999999999999999987765
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=0.087 Score=42.50 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~ 604 (866)
.+|+++|+|.|.+|+.+|..|.+.|.+|++++.+..
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 468999999999999999999999999999987654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=91.92 E-value=0.052 Score=48.08 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=32.2
Q ss_pred cccccceeeecCCccHHHHHHHHHHCC--CeEEEEecc
Q psy9583 387 MNKNFDVIVIGAGPGGYVASIRLAQLG--FKTACIDEW 422 (866)
Q Consensus 387 m~~~~dVvIIGgG~AGl~aA~~L~~~g--~~V~liek~ 422 (866)
|.++++|.|||+|.-|.++|..|+..| .++.|+|..
T Consensus 2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~ 39 (146)
T d1ez4a1 2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (146)
T ss_dssp BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence 556789999999999999999999987 589999975
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=91.91 E-value=0.045 Score=50.82 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=32.9
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l 606 (866)
-++|.|||+|.+|..+|..++..|.+|+++++.+.-+
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l 40 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGI 40 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 3789999999999999999999999999998865533
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.71 E-value=0.06 Score=47.92 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.3
Q ss_pred cCCCeEEEECCcHHHHHHHHHHHhcCCcEEEEec
Q psy9583 568 NVPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEM 601 (866)
Q Consensus 568 ~~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~ 601 (866)
-.+++++|||||.+|.+-+..|.+.|.+|+++..
T Consensus 11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3479999999999999999999999999999954
|
| >d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: HlyD-like secretion proteins superfamily: HlyD-like secretion proteins family: HlyD-like secretion proteins domain: Multidrug resistance protein MexA domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.71 E-value=0.064 Score=51.62 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=36.0
Q ss_pred EEEEecceeeEEecCCCeEEEEEeecCCCEEecCCEEEEEecC
Q psy9583 38 IDIETDKVILELPAPQDGIINKIIITDGSIVTSNQVIALIDTD 80 (866)
Q Consensus 38 ~~ve~~k~~~~i~~~~~G~~~~~~~~~g~~v~~g~~l~~~~~~ 80 (866)
++|+..+ .++|.|+.+|+|.++++++|+.|..|++|+.|+..
T Consensus 8 G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~VkkGq~L~~ld~~ 49 (237)
T d1vf7a_ 8 GRTNAFR-IAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA 49 (237)
T ss_dssp EECEESC-EEEECCSSCEEEEECCSCSSEEECTTSEEEEECCH
T ss_pred EEEEeeE-EEEEEeecCEEEEEEECCCcCEECCCCEEEEEehH
Confidence 4566543 46899999999999999999999999999999753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=91.61 E-value=0.071 Score=44.85 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=30.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+|||||..|..-|..|.+.|.+|++++..
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~ 44 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 478999999999999999999999999999875
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.40 E-value=0.069 Score=50.18 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=29.6
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+|.|||.|.-|+..|..|++.|++|+.+|.+
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n 32 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS 32 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence 4999999999999999999999999999985
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.23 E-value=0.077 Score=48.38 Aligned_cols=34 Identities=18% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 570 PKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 570 ~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
.|+|+|+|+|.+|..+|..|.+.|.+|++++|..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 4899999999999999999999999999999864
|
| >d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Azotobacter vinelandii [TaxId: 354]
Probab=90.96 E-value=0.07 Score=41.56 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=25.2
Q ss_pred CeEEEEEEEeCCCCeeeCCCeEEEEEe
Q psy9583 16 SEATLLNWHKKEGELVVRNENLIDIET 42 (866)
Q Consensus 16 ~~g~i~~w~~~~G~~v~~g~~l~~ve~ 42 (866)
.+|+|.++++++||.|+.|++|+.|+.
T Consensus 51 ~~G~v~~i~v~~Gd~v~~G~~l~~i~~ 77 (79)
T d1ghja_ 51 ADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred eeEEEEEEEcCCCCEECCCCEEEEEeC
Confidence 569999999999999999999999974
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=90.89 E-value=0.082 Score=48.52 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=30.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
|+++|||+|..|.-+|..|++.|.+|+++.|.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 789999999999999999999999999998753
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=90.70 E-value=0.58 Score=44.09 Aligned_cols=33 Identities=24% Similarity=0.241 Sum_probs=29.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.++|+|||+|..|.-+|..+++.+.+++++=+.
T Consensus 32 gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~ 64 (235)
T d1w4xa2 32 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT 64 (235)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred CCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence 478999999999999999999999998887654
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=90.68 E-value=0.056 Score=50.23 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=30.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+.+|+|||+|.-|.+.|..|++.|++|+++.++
T Consensus 7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~ 39 (189)
T d1n1ea2 7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMN 39 (189)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred eceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence 467999999999999999999999999999875
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=90.53 E-value=0.1 Score=51.58 Aligned_cols=33 Identities=18% Similarity=0.452 Sum_probs=30.5
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~ 604 (866)
.|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~ 37 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP 37 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 489999999999999999999999999998653
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=90.36 E-value=0.085 Score=53.93 Aligned_cols=36 Identities=25% Similarity=0.374 Sum_probs=31.7
Q ss_pred CeEEEECCcHHHHHHHHHHH-----hcCCcEEEEecCCcCC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWR-----RLGSEVTILEMSSNFL 606 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~-----~~g~~Vtli~~~~~~l 606 (866)
-.|+|||||++|+-+|..|+ +.|.+|+++++.+.+.
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~ 48 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence 36999999999999999996 5799999999987764
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=90.31 E-value=0.089 Score=46.98 Aligned_cols=37 Identities=19% Similarity=0.157 Sum_probs=32.3
Q ss_pred hcccccceeeecCCccHHHHHHHHHHCCC-eEEEEecc
Q psy9583 386 IMNKNFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEW 422 (866)
Q Consensus 386 ~m~~~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~ 422 (866)
.|.++++|.|||+|.-|.++|..|...++ +++|+|..
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~ 40 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV 40 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEec
Confidence 46678999999999999999999888875 79999975
|
| >d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.15 E-value=0.18 Score=41.25 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=27.6
Q ss_pred CCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 53 QDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 53 ~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
..|+|.++++++||.|..|++|+.++++..
T Consensus 18 ~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~ 47 (102)
T d1y8ob1 18 TMGTVQRWEKKVGEKLSEGDLLAEIETDKA 47 (102)
T ss_dssp SEEEEEEECSCTTCEECTTCEEEEEECSSC
T ss_pred cEEEEEEEEeCCCCEEecCccEEEEEcCcE
Confidence 679999999999999999999999997753
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.71 E-value=0.11 Score=48.17 Aligned_cols=32 Identities=28% Similarity=0.248 Sum_probs=30.6
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+|.|||+|.-|..-|..+++.|++|+++|+.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~ 36 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT 36 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence 67999999999999999999999999999986
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=89.54 E-value=1.4 Score=41.58 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=27.1
Q ss_pred eEEEECCcHHHHHHHHHHHhcCC-cEEEEecCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGS-EVTILEMSS 603 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~-~Vtli~~~~ 603 (866)
.++|||+|+.|+.+|..++++|. +|.+++...
T Consensus 5 DvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~ 37 (240)
T d1feca1 5 DLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK 37 (240)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence 58999999999999999999874 588887654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.46 E-value=0.47 Score=40.66 Aligned_cols=31 Identities=16% Similarity=0.488 Sum_probs=29.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~ 602 (866)
+|+|+|+|..|..++..|.+.|.+|++++..
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d 32 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 32 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCC
Confidence 6899999999999999999999999999874
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=89.13 E-value=0.17 Score=45.33 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=30.9
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~ 604 (866)
+|+|+|+|.+|.-+|..|++.|.+|+++.|.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 689999999999999999999999999988764
|
| >d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Neisseria meningitidis [TaxId: 487]
Probab=88.86 E-value=0.12 Score=40.37 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=26.8
Q ss_pred CCeEEEEEeecCCCEEecCCEEEEEecCCc
Q psy9583 53 QDGIINKIIITDGSIVTSNQVIALIDTDIS 82 (866)
Q Consensus 53 ~~G~~~~~~~~~g~~v~~g~~l~~~~~~~~ 82 (866)
.+++|.++++++||.|..|++|+.++++..
T Consensus 14 ~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~ 43 (81)
T d1gjxa_ 14 ENVDIIAVEVNVGDTIAVDDTLITLETDKA 43 (81)
T ss_dssp SSEEEEEECCCSSCBCCSSCCCEEEECSSC
T ss_pred cEEEEEEEEeCCCCEECCCCEEEEEEcCCc
Confidence 468899999999999999999999997653
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.67 E-value=0.15 Score=54.00 Aligned_cols=42 Identities=29% Similarity=0.451 Sum_probs=38.8
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccCCCcccccCCCccce
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWKDNEENFALGGTCTN 437 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~~~~~~~~~GG~~~~ 437 (866)
.|||||+|.|..=.-.|..|++.|.+|+=+|++ +.+||.|..
T Consensus 6 e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N------~yYGg~~aS 47 (491)
T d1vg0a1 6 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSR------SYYGGNWAS 47 (491)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS------SSSCGGGCE
T ss_pred ccCEEEECCChHHHHHHHHHHhcCCEEEEecCC------CcCCCcccc
Confidence 599999999999999999999999999999998 788998753
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=88.41 E-value=0.12 Score=47.62 Aligned_cols=32 Identities=25% Similarity=0.094 Sum_probs=30.3
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+|.|||+|.-|..-|..+++.|++|+++|+.
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~ 36 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDIN 36 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECC
Confidence 56999999999999999999999999999986
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=88.04 E-value=0.19 Score=50.15 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=30.8
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~ 604 (866)
.|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~ 50 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPV 50 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 699999999999999999999999999998654
|
| >d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of dihydrolipoamide acetyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.88 E-value=0.15 Score=39.70 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=27.0
Q ss_pred CCeEEEEEeecCCCEEecCCEEEEEecCC
Q psy9583 53 QDGIINKIIITDGSIVTSNQVIALIDTDI 81 (866)
Q Consensus 53 ~~G~~~~~~~~~g~~v~~g~~l~~~~~~~ 81 (866)
.+|+|.++++++||.|..|++|+.++++.
T Consensus 14 ~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K 42 (80)
T d1laba_ 14 HEGEIVKWFVKPGDEVNEDDVLCEVQNDK 42 (80)
T ss_dssp CSEEEEECCCSSCCEECSSCCCEEEECSS
T ss_pred eeEEEEEEEeCCCCEEeeCcCEEEEEccc
Confidence 57999999999999999999999999765
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.72 E-value=0.96 Score=42.36 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=27.6
Q ss_pred ccceeeecCCccHHHHHHHHH--------------------HCCC-eEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLA--------------------QLGF-KTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~--------------------~~g~-~V~liek~ 422 (866)
..+|+|||+|-.++=+|..|. +.|. +|+++-|.
T Consensus 39 gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR 92 (216)
T d1lqta1 39 GARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR 92 (216)
T ss_dssp SSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred CceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence 368999999999999999887 4564 59999875
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=87.61 E-value=0.2 Score=45.09 Aligned_cols=31 Identities=19% Similarity=0.148 Sum_probs=29.4
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+|.|||.|.-|.+.|..|++.|++|+++|+.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 5999999999999999999999999999985
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=87.29 E-value=0.25 Score=50.70 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=31.3
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
.|+|||+|+.|+-+|..|++.|.+|.+++++.++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~ 37 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLW 37 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCCC
Confidence 4899999999999999999999999999998654
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.07 E-value=0.18 Score=46.22 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=29.4
Q ss_pred cceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
++|.|||+|.-|.+.|..|++.|++|.++.|.
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 35999999999999999999999999999764
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=86.99 E-value=0.23 Score=42.84 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=30.0
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMS 602 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~ 602 (866)
|+++|+|.|..|..+|..|.+.|.+|++++..
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d 32 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence 67999999999999999999999999999875
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=86.23 E-value=0.29 Score=50.30 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=31.2
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNF 605 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~ 605 (866)
.++|||+|+.|+-+|..|++.|.+|.+++++..+
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~~ 42 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW 42 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 5899999999999999999999999999997543
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=85.90 E-value=0.3 Score=49.15 Aligned_cols=33 Identities=33% Similarity=0.467 Sum_probs=30.9
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~ 604 (866)
.|+|||+|..|+-+|..+++.|.+|.++++.+.
T Consensus 25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~ 57 (322)
T d1d4ca2 25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPI 57 (322)
T ss_dssp SEEEECSSHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 599999999999999999999999999998764
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=85.54 E-value=0.31 Score=44.02 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=30.7
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+|+|+|-++.+++..|.+.|.+++|+.|.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt 50 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRT 50 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence 478999999999999999999999999999885
|
| >d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Barrel-sandwich hybrid superfamily: Single hybrid motif family: Biotinyl/lipoyl-carrier proteins and domains domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex species: Escherichia coli [TaxId: 562]
Probab=85.14 E-value=0.055 Score=42.25 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=25.3
Q ss_pred CCeEEEEEEEeCCCCeeeCCCeEEEEEe
Q psy9583 15 ISEATLLNWHKKEGELVVRNENLIDIET 42 (866)
Q Consensus 15 ~~~g~i~~w~~~~G~~v~~g~~l~~ve~ 42 (866)
-.+|+|.++++++||.|+.||+|+.||.
T Consensus 51 ~~~G~l~~i~v~~Gd~v~~G~~l~~i~e 78 (80)
T d1pmra_ 51 SADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp CSBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred cCCEEEEEEEeCCCCEECCCCEEEEEeC
Confidence 3579999999999999999999999873
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=84.81 E-value=0.36 Score=49.33 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=32.1
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFL 606 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l 606 (866)
.++|||+|..|+-+|..|++.|.+|.+++++....
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~ 40 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDS 40 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCC
Confidence 58999999999999999999999999999986543
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=84.72 E-value=0.36 Score=48.44 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=70.5
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCC------------------------c---------------cc--
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLN------------------------T---------------VD-- 610 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~------------------------~---------------~d-- 610 (866)
.|+|||+|..|+-.|..+++.|.+|.++++.+.... . .+
T Consensus 21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~~ 100 (317)
T d1qo8a2 21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIK 100 (317)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccchh
Confidence 599999999999999999999999999998654310 0 00
Q ss_pred -----------------------------------------------HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCC-
Q psy9583 611 -----------------------------------------------EEIAKKAFHLLNKQGLNIILNTKIHDIKINKE- 642 (866)
Q Consensus 611 -----------------------------------------------~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~- 642 (866)
..+...+.+.+++.|+++++++.++++..+++
T Consensus 101 lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g 180 (317)
T d1qo8a2 101 LVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDH 180 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTTS
T ss_pred HHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeecccc
Confidence 11233444556778999999999999866443
Q ss_pred eEE-EEEeeCCCCccceeEEEeccEEEEeecc
Q psy9583 643 NVL-INYSNKSTNVKTEIITSIFDKLLIAIGR 673 (866)
Q Consensus 643 ~~~-v~~~~~~g~~~~~~~~~~~D~vi~a~G~ 673 (866)
.+. +.+...++. ...+.++.||+|+|-
T Consensus 181 ~V~Gv~~~~~~~~----~~~i~Ak~VVlAtGG 208 (317)
T d1qo8a2 181 SVVGAVVHGKHTG----YYMIGAKSVVLATGG 208 (317)
T ss_dssp BEEEEEEEETTTE----EEEEEEEEEEECCCC
T ss_pred cceeeEeecccce----EEEEeccceEEeccc
Confidence 443 444433443 457899999999983
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=84.65 E-value=0.33 Score=42.83 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=30.3
Q ss_pred cceeeec-CCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 391 FDVIVIG-AGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 391 ~dVvIIG-gG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.+|.||| .|.-|.+.|..|++.|++|.++|+.
T Consensus 10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~ 42 (152)
T d2pv7a2 10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRE 42 (152)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTT
T ss_pred CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccc
Confidence 6799999 6999999999999999999999986
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=84.47 E-value=0.43 Score=42.85 Aligned_cols=34 Identities=29% Similarity=0.288 Sum_probs=30.6
Q ss_pred cccceeeecCCccHHHHHHHHHHCCC-eEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~ 422 (866)
++.+|+|+|+|-++.+++..|.+.|. ++.|+.|.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence 45789999999999999999999996 69999885
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.36 E-value=0.39 Score=49.64 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=32.0
Q ss_pred CeEEEECCcHHHHHHHHHHHh------cCCcEEEEecCCcCC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRR------LGSEVTILEMSSNFL 606 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~------~g~~Vtli~~~~~~l 606 (866)
-.|+|||||+.|+-+|..|++ .|.+|.+++++..+.
T Consensus 33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG 74 (380)
T d2gmha1 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIG 74 (380)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTT
T ss_pred CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCC
Confidence 379999999999999999987 799999999987653
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.35 E-value=0.33 Score=44.41 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=28.6
Q ss_pred ceeee-cCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 392 DVIVI-GAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 392 dVvII-GgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+|.|| |+|.-|.+.|..|++.|++|++..|+
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~ 33 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR 33 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 48999 66999999999999999999999986
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=84.25 E-value=0.37 Score=43.32 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=30.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.-.|+|+|+|+-|+.++..++..|.+|+++|+.
T Consensus 27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~ 59 (170)
T d1e3ja2 27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS 59 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEcccccchhhHhhHhhhcccccccchH
Confidence 356999999999999999999999999999985
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=84.24 E-value=0.27 Score=40.58 Aligned_cols=33 Identities=12% Similarity=0.085 Sum_probs=29.1
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+|||+|.+|.-.|..|++...+++++.+.
T Consensus 32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r 64 (107)
T d2gv8a2 32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLL 64 (107)
T ss_dssp TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence 478999999999999999999998887777654
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=83.67 E-value=0.39 Score=48.41 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=29.7
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
.|+|||+|+.|+-.|..+++.|.+|.++++.+
T Consensus 7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~ 38 (336)
T d2bs2a2 7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP 38 (336)
T ss_dssp SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence 49999999999999999999999999998754
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.62 E-value=0.29 Score=45.28 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=27.1
Q ss_pred ceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 392 DVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 392 dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
+|.|||.|.-|+..|..++ .|++|+.+|-+
T Consensus 2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din 31 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDIL 31 (196)
T ss_dssp EEEEECCSHHHHHHHHHHT-TTSEEEEECSC
T ss_pred EEEEECCChhHHHHHHHHH-CCCcEEEEECC
Confidence 5999999999999998886 59999999975
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=83.37 E-value=0.6 Score=41.54 Aligned_cols=35 Identities=34% Similarity=0.660 Sum_probs=32.0
Q ss_pred CCCeEEEECCcHHHHHHHHHHHhcCCcEEEEecCC
Q psy9583 569 VPKKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSS 603 (866)
Q Consensus 569 ~~~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~ 603 (866)
.|.+++|+|+|..|+..+....++|.+|++++.+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 37899999999999999999999999999998753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.34 E-value=0.56 Score=41.86 Aligned_cols=34 Identities=29% Similarity=0.213 Sum_probs=30.5
Q ss_pred cccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 389 KNFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 389 ~~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
..-.|+|+|+|+.|+.++.-++..|.+|+.+++.
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence 3467999999999999999999999999999975
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.70 E-value=0.47 Score=42.71 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=29.6
Q ss_pred ccceeeecCCccHHHHHHHHHHCCC-eEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGF-KTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~-~V~liek~ 422 (866)
.-.|+|+|+|+.|+.++..++..|. +|+++|+.
T Consensus 27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~ 60 (171)
T d1pl8a2 27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS 60 (171)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred CCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence 3579999999999999999999998 69999875
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=82.61 E-value=1.3 Score=38.71 Aligned_cols=53 Identities=11% Similarity=0.163 Sum_probs=39.8
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEeC
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIILN 631 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~~ 631 (866)
.+++|+|.|..|..++..|.+.|.+|++++..+. ......+.+...|+.++.+
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~--------~~~~~~~~~~~~~~~vi~G 56 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPE--------DDIKQLEQRLGDNADVIPG 56 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH--------HHHHHHHHHHCTTCEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch--------hHHHHHHHhhcCCcEEEEc
Confidence 5799999999999999999999999999976432 2233344455567776643
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=82.48 E-value=0.66 Score=38.66 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=29.5
Q ss_pred ccceeeecCCc-----------cHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGP-----------GGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~-----------AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+|||+|| ++..|+..|++.|++++++..+
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~N 47 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCN 47 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecC
Confidence 46899999995 7889999999999999999865
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.09 E-value=0.14 Score=48.88 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=23.3
Q ss_pred eEEEECCcHHHHHHHHHHHhcCCcEE
Q psy9583 572 KLCIIGAGVIGLEIGSIWRRLGSEVT 597 (866)
Q Consensus 572 ~vvVIGgG~~glE~A~~l~~~g~~Vt 597 (866)
+|+|||+|.+|+-.|..|++.|.+|+
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred EEEEECchHHHHHHHHHHHHCCCCce
Confidence 69999999999999999999987543
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=81.78 E-value=0.49 Score=41.53 Aligned_cols=33 Identities=33% Similarity=0.356 Sum_probs=29.5
Q ss_pred ccceeeecCCccHHHHHHHHHHCCC--eEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGF--KTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~--~V~liek~ 422 (866)
..+|.|||+|.-|.++|..|...+. ++.|+|..
T Consensus 6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~ 40 (148)
T d1ldna1 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (148)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence 4689999999999999999999874 79999975
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=81.54 E-value=0.6 Score=41.47 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=30.2
Q ss_pred ccceeeecCCccHHHHHHHHHHCCC--eEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGF--KTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~--~V~liek~ 422 (866)
+.+|.|||+|.-|.++|+.|...|. ++.|+|..
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~ 54 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVL 54 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 4799999999999999999999985 79999975
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=80.91 E-value=0.62 Score=39.29 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=29.6
Q ss_pred ccceeeecCCc-----------cHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGP-----------GGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~-----------AGl~aA~~L~~~g~~V~liek~ 422 (866)
..+|+|||+|| ++..|+..|++.|++++++..+
T Consensus 7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~N 50 (127)
T d1a9xa3 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSN 50 (127)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSC
T ss_pred CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCc
Confidence 47899999997 6889999999999999999875
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=80.86 E-value=0.71 Score=38.20 Aligned_cols=34 Identities=24% Similarity=0.477 Sum_probs=31.4
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEeccC
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEWK 423 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~~ 423 (866)
..+|.|+|||-=|...|..+++.|+++.++|..+
T Consensus 11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~ 44 (111)
T d1kjqa2 11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA 44 (111)
T ss_dssp CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3679999999999999999999999999999863
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.85 E-value=0.65 Score=41.57 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=29.9
Q ss_pred ccceeeecCCccHHHHHHHHHHCCCeEEEEecc
Q psy9583 390 NFDVIVIGAGPGGYVASIRLAQLGFKTACIDEW 422 (866)
Q Consensus 390 ~~dVvIIGgG~AGl~aA~~L~~~g~~V~liek~ 422 (866)
.-.|+|+|+|+.|+.++..++..|.+|+++++.
T Consensus 28 g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~ 60 (168)
T d1piwa2 28 GKKVGIVGLGGIGSMGTLISKAMGAETYVISRS 60 (168)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCEEEEEESS
T ss_pred CCEEEEECCCCcchhHHHHhhhccccccccccc
Confidence 457999999999999999888899999999975
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=80.71 E-value=0.52 Score=41.23 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=28.6
Q ss_pred cceeeecCCccHHHHHHHHHHCCC--eEEEEecc
Q psy9583 391 FDVIVIGAGPGGYVASIRLAQLGF--KTACIDEW 422 (866)
Q Consensus 391 ~dVvIIGgG~AGl~aA~~L~~~g~--~V~liek~ 422 (866)
++|.|||+|.-|.++|..|...|. +++|+|..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 35 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN 35 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence 579999999999999999998874 79999975
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=80.38 E-value=0.68 Score=35.46 Aligned_cols=34 Identities=24% Similarity=0.487 Sum_probs=30.7
Q ss_pred CeEEEECCcHHHHHHHHHHHhcCCcEEEEecCCc
Q psy9583 571 KKLCIIGAGVIGLEIGSIWRRLGSEVTILEMSSN 604 (866)
Q Consensus 571 ~~vvVIGgG~~glE~A~~l~~~g~~Vtli~~~~~ 604 (866)
|+|.|+|||..|-.++..-.++|.++.++...+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 6799999999999999999999999999987544
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=80.24 E-value=1.9 Score=42.09 Aligned_cols=57 Identities=21% Similarity=0.279 Sum_probs=42.6
Q ss_pred CCeEEEECC-cHHHHHHHHHHHhcCCcEEEEecCCcCCCcccHHHHHHHHHHHHHcCCEEEe
Q psy9583 570 PKKLCIIGA-GVIGLEIGSIWRRLGSEVTILEMSSNFLNTVDEEIAKKAFHLLNKQGLNIIL 630 (866)
Q Consensus 570 ~~~vvVIGg-G~~glE~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GV~i~~ 630 (866)
-++|+|.|| |++|..++..|.+.|.+|+.+.|.+.... .. .......+...+++++.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~---~~-~~~~~~~~~~~~v~~v~ 60 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSN---ID-KVQMLLYFKQLGAKLIE 60 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSC---HH-HHHHHHHHHTTTCEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccc---hh-HHHHHhhhccCCcEEEE
Confidence 467999996 99999999999999999999988655332 22 23334556777888763
|