Psyllid ID: psy9586

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHccccccccEEEEEccccccccccccHHccccccccEEEEEEcccccccccEEEEEEcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHcccccHHHcEEEccccccccccHHHHHHcccccccEEEEEcccccEcEEEEEEHHHcccEEEEHHHHEccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccHHHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccc
Coil and Loop (DISEMBL)
VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKgkilkdsddikslglkngdmvfikdlgpqigwSTVFMAEYAGPLFVYLIFYyrpwifygseaaskpySYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLAlrdlrppgtnvrripvatsnpftslfdyvscpnytyefGSWLSFSLLTSCFPALLFASAGMYQMTVWALgkhknykkefpdypkqrkaivpfvi
Flexible Loop (DISEMBL)
vsgsftvkdikkevhkaksqlypdrqavrleikgkilkdsddikslglkngDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVrripvatsnpftSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKnykkefpdypkqrkaivpfvi
Low Complexity Region (SEG)
VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI
Disordered region (IsUnstruct)
**************************AVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFP**************
Disordered Region (DISOPRED)
**GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI
Disordered Region (DISEMBL)
VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI
Disordered Region (DISPRO)
***SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q9N5Y2	308	Probable very-long-chain	yes	N/A	1.0	0.756	0.447	4e-63
Q9CY27	308	Very-long-chain enoyl-CoA	yes	N/A	0.978	0.740	0.437	6e-60
Q9NZ01	308	Very-long-chain enoyl-CoA	yes	N/A	0.978	0.740	0.434	8e-60
Q3ZCD7	308	Very-long-chain enoyl-CoA	yes	N/A	0.978	0.740	0.434	9e-60
Q64232	308	Very-long-chain enoyl-CoA	yes	N/A	0.978	0.740	0.434	1e-59
Q5HYJ1	363	Trans-2,3-enoyl-CoA reduc	no	N/A	0.995	0.639	0.349	1e-42
Q8BFZ1	361	Trans-2,3-enoyl-CoA reduc	no	N/A	0.995	0.642	0.342	1e-41
Q55C17	300	Very-long-chain enoyl-CoA	yes	N/A	0.918	0.713	0.357	8e-40
Q3SZ89	363	Trans-2,3-enoyl-CoA reduc	no	N/A	0.995	0.639	0.346	8e-39
O94511	295	Putative enoyl reductase	yes	N/A	0.832	0.657	0.312	1e-26

>sp|Q9N5Y2|TECR_CAEEL Probable very-long-chain enoyl-CoA reductase art-1 OS=Caenorhabditis elegans GN=art-1 PE=3 SV=1

 Score =  241 bits (614), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 128/286 (44%), Positives = 159/286 (55%), Gaps = 53/286 (18%)

Query: 1   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV-FIKDL 59
           +SGS T+K IKK + + K +L  +RQA+R+E KGK L D   +  LGL +   V +++DL
Sbjct: 23  ISGSETIKAIKKRIAQKKLKLTEERQALRVEPKGKPLADDQKLSDLGLSSQKAVLYVRDL 82

Query: 60  GPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRV 119
           GPQI W TVFMAEYAGPLFVY +FY RP   YG  A +        +A   +  HY KR+
Sbjct: 83  GPQIAWKTVFMAEYAGPLFVYPLFYLRPTFIYGQAAVNATMHPAVQIAFFAWSFHYAKRL 142

Query: 120 LET--------------------------------------LTPSVFCQL---------- 131
            ET                                       TP  F  L          
Sbjct: 143 FETQFIHRFGNSTMPQFNLVKNCSYYWGFAAFVAYFVNHPLFTPPAFGDLQVYFGLAGFV 202

Query: 132 ----GNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLT 187
               GNLSIH+ LR+LRP GT  RRIP    NP + LF+YVSCPNYTYE  SW+ FS++ 
Sbjct: 203 ISEFGNLSIHILLRNLRPAGTRERRIPKPDGNPLSLLFNYVSCPNYTYEVASWIFFSIMV 262

Query: 188 SCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
              PA++F +AG  QM +WA GKH+NY KEFPDYPK RKAIVPFV+
Sbjct: 263 QSLPAIIFTTAGFAQMAIWAQGKHRNYLKEFPDYPKNRKAIVPFVL 308

Reduces trans-2,3-acyl-CoA to acyl-CoA of long and very long chain fatty acids.
Caenorhabditis elegans (taxid: 6239)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 9EC: 3

>sp|Q9CY27|TECR_MOUSE Very-long-chain enoyl-CoA reductase OS=Mus musculus GN=Tecr PE=1 SV=1

 Score =  230 bits (586), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 123/281 (43%), Positives = 157/281 (55%), Gaps = 53/281 (18%)

Query: 6   TVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGW 65
           T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DLG QI W
Sbjct: 28  TISEIKTLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISW 87

Query: 66  STVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETL- 123
            TVF+ EYAGPLF+YL+FY+R P+I+      +     V HLA +C+  HY KR+LETL 
Sbjct: 88  VTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFTSSRHTVVHLACMCHSFHYIKRLLETLF 147

Query: 124 -------------------------------------TPS--------------VFCQLG 132
                                                TP               V CQLG
Sbjct: 148 VHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGVQQVKLALAVFVICQLG 207

Query: 133 NLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPA 192
           N SIH+ALRDLRP G+  R+IP  T NPFT LF  VSCPNYTYE GSW+ F++LT C P 
Sbjct: 208 NFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAILTQCVPV 267

Query: 193 LLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            LF+  G  QMT+WA GKH++Y KEF DYP  R  I+PF++
Sbjct: 268 ALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFLL 308

Reduces trans-2,3-stearoyl-CoA to stearoyl-CoA of long and very long chain fatty acids.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q9NZ01|TECR_HUMAN Very-long-chain enoyl-CoA reductase OS=Homo sapiens GN=TECR PE=1 SV=1

 Score =  229 bits (585), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 122/281 (43%), Positives = 157/281 (55%), Gaps = 53/281 (18%)

Query: 6   TVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGW 65
           T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DLG QI W
Sbjct: 28  TIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISW 87

Query: 66  STVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETL- 123
            TVF+ EYAGPLF+YL+FY+R P+I+      +     V HLA +C+  HY KR+LETL 
Sbjct: 88  VTVFLTEYAGPLFIYLLFYFRVPFIYGHKYDFTSSRHTVVHLACICHSFHYIKRLLETLF 147

Query: 124 -------------------------------------TPS--------------VFCQLG 132
                                                TP               V CQLG
Sbjct: 148 VHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLG 207

Query: 133 NLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPA 192
           N SIH+ALRDLRP G+  R+IP  T NPFT LF  VSCPNYTYE GSW+ F+++T C P 
Sbjct: 208 NFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPV 267

Query: 193 LLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            LF+  G  QMT+WA GKH++Y KEF DYP  R  I+PF++
Sbjct: 268 ALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFLL 308

Reduces trans-2,3-stearoyl-CoA to stearoyl-CoA of long and very long chain fatty acids.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q3ZCD7|TECR_BOVIN Very-long-chain enoyl-CoA reductase OS=Bos taurus GN=TECR PE=2 SV=1

 Score =  229 bits (585), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 122/281 (43%), Positives = 157/281 (55%), Gaps = 53/281 (18%)

Query: 6   TVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGW 65
           T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DLG QI W
Sbjct: 28  TIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISW 87

Query: 66  STVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETL- 123
            TVF+ EYAGPLF+YL+FY+R P+I+      +     V HLA +C+  HY KR+LETL 
Sbjct: 88  VTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFTSSRHTVVHLACICHSFHYIKRLLETLF 147

Query: 124 -------------------------------------TPS--------------VFCQLG 132
                                                TP               V CQLG
Sbjct: 148 VHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGAQQVKLALAIFVICQLG 207

Query: 133 NLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPA 192
           N SIH+ALRDLRP G+  R+IP  T NPFT LF  VSCPNYTYE GSW+ F+++T C P 
Sbjct: 208 NFSIHMALRDLRPAGSKTRKIPYPTRNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCLPV 267

Query: 193 LLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            LF+  G  QMT+WA GKH++Y KEF DYP  R  I+PF++
Sbjct: 268 ALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFLL 308

Reduces trans-2,3-stearoyl-CoA to stearoyl-CoA of long and very long chain fatty acids.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q64232|TECR_RAT Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus GN=Tecr PE=2 SV=1

 Score =  229 bits (585), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/281 (43%), Positives = 157/281 (55%), Gaps = 53/281 (18%)

Query: 6   TVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGW 65
           T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DLG QI W
Sbjct: 28  TISEIKTLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDLGAQISW 87

Query: 66  STVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETL- 123
            TVF+ EYAGPLF+YL+FY+R P+I+      +     V HLA +C+  HY KR+LETL 
Sbjct: 88  VTVFLTEYAGPLFIYLLFYFRVPFIYGRKYDFTSSRHTVVHLACMCHSFHYIKRLLETLF 147

Query: 124 -------------------------------------TPS--------------VFCQLG 132
                                                TP               V CQLG
Sbjct: 148 VHRFSHGTMPLRNIFKNCTYYWGFAAWMAYYINHPLYTPPTYGVQQVKLALAIFVICQLG 207

Query: 133 NLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPA 192
           N SIH+ALRDLRP G+  R+IP  T NPFT LF  VSCPNYTYE GSW+ F+++T C P 
Sbjct: 208 NFSIHMALRDLRPAGSKTRKIPYPTKNPFTWLFLLVSCPNYTYEVGSWIGFAIMTQCVPV 267

Query: 193 LLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            LF+  G  QMT+WA GKH++Y KEF DYP  R  I+PF++
Sbjct: 268 ALFSLVGFTQMTIWAKGKHRSYLKEFRDYPPLRMPIIPFLL 308

Reduces trans-2,3-stearoyl-CoA to stearoyl-CoA of long and very long chain fatty acids.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q5HYJ1|TECRL_HUMAN Trans-2,3-enoyl-CoA reductase-like OS=Homo sapiens GN=TECRL PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 144/286 (50%), Gaps = 54/286 (18%)

Query: 1   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           V+ S T+ D+K++ HKA  + YP R  ++LE  G  LKD   I+S+   +   ++  DLG
Sbjct: 79  VTQSSTIHDVKQKFHKACPKWYPSRVGLQLECGGPFLKDYITIQSIAASSIVTLYATDLG 138

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRV 119
            Q+ W+TVF+AEY GPL +YL+FY R P I+ G E+A +    V HLA  C+ +HY + +
Sbjct: 139 QQVSWTTVFLAEYTGPLLIYLLFYLRIPCIYDGKESARRLRHPVVHLACFCHCIHYIRYL 198

Query: 120 LETL--------------------------------------TPSVF------------- 128
           LETL                                      TP  F             
Sbjct: 199 LETLFVHKVSAGHTPLKNLIMSCAFYWGFTSWIAYYINHPLYTPPSFGNRQITVSAINFL 258

Query: 129 -CQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLT 187
            C+ GN  I++ L      G N    P    NPFT +F  VSCPNYTYE GSW+SF+++T
Sbjct: 259 ICEAGNHFINVMLSHPNHTGNNA-CFPSPNYNPFTWMFFLVSCPNYTYEIGSWISFTVMT 317

Query: 188 SCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
              P  +F      QM++WA  KHK Y ++F  Y  ++ A++PF++
Sbjct: 318 QTLPVGIFTLLMSIQMSLWAQKKHKIYLRKFNSYIHRKSAMIPFIL 363

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BFZ1|TECRL_MOUSE Trans-2,3-enoyl-CoA reductase-like OS=Mus musculus GN=Tecrl PE=2 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 145/286 (50%), Gaps = 54/286 (18%)

Query: 1   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           V+ + T+ D+K++ HKA  + YP R  ++LE  G  L+D   ++S+   +   ++  DLG
Sbjct: 77  VTQTSTIHDVKQKFHKACPKWYPSRIGLQLEYGGPYLRDYITVQSVAASSIITLYFTDLG 136

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRV 119
            Q+GW+TVF+AEY+GPL +YL+FY R  +I+   E+   P   V HLA  C+ +HY + +
Sbjct: 137 QQVGWTTVFLAEYSGPLLIYLLFYLRSSYIYDVKESTRWPRHPVVHLAFFCHCIHYIRLL 196

Query: 120 LETL--------------------------------------TPS--------------V 127
           LETL                                      TP               +
Sbjct: 197 LETLFVHKVSTGHSPMKNLIKGCAFYWGFTSWMAYYINHPRYTPPSFGNRQVIVSAINFL 256

Query: 128 FCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLT 187
           FC+ GN  I+  L      G+N    P    NPFT LF  VSCPNYTYE GSW+SF+++T
Sbjct: 257 FCEAGNHFINTVLAHPNHTGSNA-CFPSPNYNPFTWLFFLVSCPNYTYEIGSWISFTVMT 315

Query: 188 SCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
              P  +F      QM++WA  KHK Y+K+F  Y  ++ AI+P ++
Sbjct: 316 QTLPVGIFTILMTIQMSLWARKKHKIYRKKFNSYVHRKSAIIPLIL 361

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|Q55C17|TECR_DICDI Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1

 Score =  163 bits (413), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 150/288 (52%), Gaps = 74/288 (25%)

Query: 7   VKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV----------FI 56
           V ++KK++  +K++L  +R  +RL +  K  K  +  ++LG K+ D+V          + 
Sbjct: 26  VGELKKQI-SSKTRLGTER--IRLAVPSKTSKLPNAFEALG-KDSDLVSKHVGADSTLYF 81

Query: 57  KDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYT 116
           KDLGPQI WS VF+ EYAGPLFVY IFY+   + YG+++   P S+   +A +CY +HY 
Sbjct: 82  KDLGPQISWSLVFICEYAGPLFVYPIFYFLSNLIYGTDS---PKSFAQKVALVCYSLHYI 138

Query: 117 KRVLETL------------------------------------------TPSVFCQLG-- 132
           KR+ ET+                                             V+  LG  
Sbjct: 139 KRIYETIFVHRFSHGTMPIFNLFKNCSYYWGCTAMVSYFVNHPLYTEAPIERVYLGLGLW 198

Query: 133 ------NLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLL 186
                 N   H+ LR+LRP G+  R+IP         LF++VSCPNYT E  SW+ FS+L
Sbjct: 199 IIGEVFNYICHIQLRNLRPAGSTERKIPRGL------LFEFVSCPNYTVEILSWIGFSIL 252

Query: 187 TSCFPALLFASAGMYQMTVWALGKHKNYKKEFPD-YPKQRKAIVPFVI 233
           T    + +FA  G  QM +WA+GKH+ Y+KEF D YPK RK ++PF++
Sbjct: 253 TQTLTSWIFALMGAAQMWIWAVGKHRRYRKEFGDKYPKSRKILIPFLL 300

Reduces trans-2,3-stearoyl-CoA to stearoyl-CoA of long and very long chain fatty acids.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q3SZ89|TECRL_BOVIN Trans-2,3-enoyl-CoA reductase-like OS=Bos taurus GN=TECRL PE=2 SV=1

 Score =  160 bits (404), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 144/286 (50%), Gaps = 54/286 (18%)

Query: 1   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           V+   T+ D+K++ HKA  Q YP R  ++LE  G  LKD+  I+S+   +   ++  DLG
Sbjct: 79  VTQKSTIHDVKQKFHKACPQWYPSRVGLQLERGGPFLKDNLTIQSVAASSIVTLYFTDLG 138

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRV 119
            Q+ W+TVF+AEY GPL +YL+FY R P+I+   E++ +    V HLA  C+ +HY + +
Sbjct: 139 QQVSWTTVFLAEYTGPLLIYLLFYLRIPYIYNMKESSRRLCHPVVHLACFCHCIHYIRYL 198

Query: 120 LETL--------------------------------------TPSVF------------- 128
           LETL                                      TP  F             
Sbjct: 199 LETLFVHKVSSGHTSLKNLLKSCAFYWGFTSWIAYYINHPRYTPPSFGYRQVAISAINFL 258

Query: 129 -CQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLT 187
            C+ GN  I++ L      G N    P    NPFT +F  VSCPNYTYE GSW+SF+++T
Sbjct: 259 ICEAGNHFINVVLSHPSHTGNNA-CFPSPNYNPFTWMFFLVSCPNYTYEIGSWISFTIMT 317

Query: 188 SCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
              P  +F      QM++WA  KHK Y K+F  Y  ++ A++PF++
Sbjct: 318 QTLPVGIFTLLMSIQMSLWAKKKHKIYLKKFSSYMHRKSAMIPFIL 363

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

>sp|O94511|YN67_SCHPO Putative enoyl reductase C646.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC646.07c PE=3 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 111/250 (44%), Gaps = 56/250 (22%)

Query: 34  GKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYR-PWIF-- 90
           G  L  +  ++  G+  G  +++KDLGPQIGW TVFM EY GPL ++L F     WI+  
Sbjct: 52  GTTLLPNTTLRKYGVGPGATIWVKDLGPQIGWRTVFMIEYLGPLVIHLFFILNYKWIYRK 111

Query: 91  -----------------------------YGSEAASKPYSYVA------HLAALCYIVHY 115
                                        +    A+ P   +       HL +  ++ ++
Sbjct: 112 DYNLCLNQKIAFVLVMLHFMKREYESIFVHRFSLATMPLRNIFKNCAHYHLLSGLFLAYF 171

Query: 116 T------------KRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTS 163
                          +L  +    F  L N   H+ LRDLRP G+  R IP         
Sbjct: 172 IYGPWHANDYIKPNHLLFLIVGWAFAVLSNFRTHIILRDLRPAGSKKRVIPTGYG----- 226

Query: 164 LFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPK 223
            F+ VS PNY +E   WL F+LLT  + + +F   G  QM VWA  KH  Y KEFP+YP+
Sbjct: 227 -FNLVSFPNYFFESLGWLFFALLTKSWASWIFLFVGSAQMFVWAKKKHARYLKEFPNYPR 285

Query: 224 QRKAIVPFVI 233
            RK ++PF +
Sbjct: 286 SRKIMIPFFL 295

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
242004484	302	synaptic glycoprotein SC2, putative [Ped	0.995	0.768	0.542	2e-85
239789843	299	ACYPI001763 [Acyrthosiphon pisum]	0.995	0.775	0.561	1e-83
194866183	302	GG15168 [Drosophila erecta] gi|190653580	0.991	0.764	0.512	2e-77
27819746	306	SD09294p, partial [Drosophila melanogast	0.991	0.754	0.512	2e-77
195337253	302	GM14597 [Drosophila sechellia] gi|194128	0.991	0.764	0.515	4e-77
211938631	306	FI06688p [Drosophila melanogaster]	0.991	0.754	0.512	5e-77
24657023	302	Sc2 [Drosophila melanogaster] gi|7292402	0.991	0.764	0.512	6e-77
195491531	302	GE21388 [Drosophila yakuba] gi|194179701	0.991	0.764	0.508	6e-77
156543298	300	PREDICTED: trans-2,3-enoyl-CoA reductase	0.995	0.773	0.540	1e-76
307191148	300	Synaptic glycoprotein SC2 [Camponotus fl	0.995	0.773	0.526	3e-76

>gi|242004484|ref|XP_002423113.1| synaptic glycoprotein SC2, putative [Pediculus humanus corporis] gi|212506059|gb|EEB10375.1| synaptic glycoprotein SC2, putative [Pediculus humanus corporis]

 Score =  321 bits (822), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/282 (54%), Positives = 193/282 (68%), Gaps = 50/282 (17%)

Query: 2   SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP 61
           S S TV  +KKEV+K   +L+P+RQ+++L++KGK LKD+D +KSL L +G  V++KDLGP
Sbjct: 21  SSSTTVAQLKKEVYKLNKKLHPNRQSLKLDVKGKALKDNDTLKSLNLMDGSKVYVKDLGP 80

Query: 62  QIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLE 121
           QIGW TVF+AEYAGPL VYL+FY RPW+ YG++  + PY +V H+AA CY  HY KR+LE
Sbjct: 81  QIGWKTVFLAEYAGPLGVYLLFYQRPWLIYGNDVENLPYHFVVHIAAACYFFHYFKRILE 140

Query: 122 TL---------------------------------------TPS-----------VFCQL 131
           TL                                        PS           + C+ 
Sbjct: 141 TLFVHRFSHATMPLTNLFKNCSYYWMFTAYVAYHINHPLYTAPSFLQIYLSLALFLLCEF 200

Query: 132 GNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFP 191
           GN SIH+ALR+LRP G+NVR+IPVAT NPFT LF++VSCPNYTYEFGSW+ F+L+T C P
Sbjct: 201 GNFSIHVALRNLRPAGSNVRKIPVATKNPFTKLFNFVSCPNYTYEFGSWVFFTLMTQCLP 260

Query: 192 ALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
           A +FA AGMYQMTVWA+GKHKNYKKEFP+YPK RKAI+PF+I
Sbjct: 261 AAIFALAGMYQMTVWAIGKHKNYKKEFPNYPKNRKAILPFLI 302

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239789843|dbj|BAH71520.1| ACYPI001763 [Acyrthosiphon pisum]

 Score =  315 bits (806), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 159/283 (56%), Positives = 192/283 (67%), Gaps = 51/283 (18%)

Query: 1   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           V+ +  + DIKK + K KS LYPDRQ++RLE +GK LKD+D +K LGLKNG  +++KDLG
Sbjct: 18  VTDASQISDIKKSISKVKSALYPDRQSIRLEARGKSLKDTDKVKDLGLKNGSKLYVKDLG 77

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVL 120
           PQIGWSTVFMAEYAGPLFVYL+FY RP +FYG+ A  K  S VA +AA C+  HYTKRVL
Sbjct: 78  PQIGWSTVFMAEYAGPLFVYLLFYARPSLFYGATANQK-MSQVAEVAAYCWSFHYTKRVL 136

Query: 121 ETL--------------------------------------TPS------------VFCQ 130
           ETL                                      TP             +FC+
Sbjct: 137 ETLFVHRFSHNTMPIMNLFKNCTYYWGFTAFVSYFVNHPLYTPPCTIQFYIGLGTFIFCE 196

Query: 131 LGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCF 190
           LGNLSIH+ALR+LRPPGT VRRIPV T+NPFT LF++VSCPNYTYE GSW+ F+++TS F
Sbjct: 197 LGNLSIHIALRNLRPPGTKVRRIPVPTTNPFTLLFNFVSCPNYTYEVGSWIGFTIMTSSF 256

Query: 191 PALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            A LF  AG YQM VWALGKH+NYKKEF DYPK RK+I+PF++
Sbjct: 257 SAGLFTFAGFYQMAVWALGKHRNYKKEFSDYPKCRKSIIPFLL 299

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194866183|ref|XP_001971797.1| GG15168 [Drosophila erecta] gi|190653580|gb|EDV50823.1| GG15168 [Drosophila erecta]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/283 (51%), Positives = 189/283 (66%), Gaps = 52/283 (18%)

Query: 2   SGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           SG+  + D++  +HK+  Q  + +RQ++RLE+KGK LKD+D ++SL L++GD V++KDLG
Sbjct: 21  SGATPIGDLRALIHKSLKQTPHANRQSLRLELKGKSLKDTDTVESLSLRSGDKVYVKDLG 80

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVL 120
           PQIGW TVF+AEYAGPL VYL+FY+RP + YG +AAS P S   H+AA CY VHY KR+L
Sbjct: 81  PQIGWKTVFLAEYAGPLIVYLLFYFRPELVYG-KAASLPISLTTHIAAGCYTVHYVKRLL 139

Query: 121 ETL---------------------------------------TPSV-----------FCQ 130
           ET+                                       +P +            C+
Sbjct: 140 ETIFVHRFSHATMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCMCTVWAALGAFALCE 199

Query: 131 LGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCF 190
           LGN S+H+ALR+LRPPGT VR+IPVA  NP T LFD+VSCPNYTYE G+W+SFS+LTSC 
Sbjct: 200 LGNFSVHIALRNLRPPGTKVRKIPVADKNPLTKLFDFVSCPNYTYEIGAWVSFSVLTSCL 259

Query: 191 PALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            A LFA AG +QMTVWAL KH+NY+KEF DYP+QR++I PFV+
Sbjct: 260 AAYLFAFAGAFQMTVWALAKHRNYRKEFKDYPRQRRSIFPFVL 302

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|27819746|gb|AAL29169.2| SD09294p, partial [Drosophila melanogaster]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 145/283 (51%), Positives = 186/283 (65%), Gaps = 52/283 (18%)

Query: 2   SGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           SG+  + D++  +HK   Q  + +RQ++RLE+KGK LKD+D ++SL L++GD +++KDLG
Sbjct: 25  SGATPIGDLRALIHKTLKQTPHANRQSLRLELKGKSLKDTDTLESLSLRSGDKIYVKDLG 84

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVL 120
           PQIGW TVF+AEYAGPL VYLIFY+RP + YG +AAS P S   H+AA CY VHY KR+L
Sbjct: 85  PQIGWKTVFLAEYAGPLIVYLIFYFRPELVYG-KAASLPISLTTHIAAGCYTVHYVKRLL 143

Query: 121 ETLTPSVF--------------------------------------------------CQ 130
           ET+   +F                                                  C+
Sbjct: 144 ETIFVHLFSHATMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCMCTVWGALGAFALCE 203

Query: 131 LGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCF 190
           LGN S+H+ALR+LRPPGT VR+IPVA  NP T LFD VSCPNYTYE G+W+SFS+LTSC 
Sbjct: 204 LGNFSVHIALRNLRPPGTKVRKIPVADGNPLTKLFDLVSCPNYTYEIGAWVSFSVLTSCL 263

Query: 191 PALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            A LFA AG +QMT+WAL KH+NYKKEF DYP+QR++I PFV+
Sbjct: 264 AAYLFAFAGAFQMTIWALAKHRNYKKEFKDYPRQRRSIFPFVL 306

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195337253|ref|XP_002035243.1| GM14597 [Drosophila sechellia] gi|194128336|gb|EDW50379.1| GM14597 [Drosophila sechellia]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 146/283 (51%), Positives = 184/283 (65%), Gaps = 52/283 (18%)

Query: 2   SGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           SG+  + D++  +HK   Q  + +RQ++RLE+KGK LKD+D ++SL L++GD V++KDLG
Sbjct: 21  SGATPIGDLRDIIHKTLKQTPHANRQSLRLELKGKSLKDTDTVESLSLRSGDKVYVKDLG 80

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVL 120
           PQIGW TVF+AEYAGPL VYLIFY+RP + YG +AAS P S   H+AA CY VHY KR+L
Sbjct: 81  PQIGWKTVFLAEYAGPLIVYLIFYFRPELVYG-KAASLPISLTTHIAAGCYTVHYVKRLL 139

Query: 121 ET--------------------------------------------------LTPSVFCQ 130
           ET                                                  L     C+
Sbjct: 140 ETIFVHRFSHATMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCMCTVWGALAAFALCE 199

Query: 131 LGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCF 190
           LGN S+H+ALR+LRPPGT VR+IPVA  NP T LFD VSCPNYTYE G+W+SFS+LTSC 
Sbjct: 200 LGNFSVHIALRNLRPPGTKVRKIPVADRNPLTKLFDLVSCPNYTYEIGAWVSFSVLTSCL 259

Query: 191 PALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            A LFA AG +QMTVWAL KH+NY+KEF DYP+QR++I PFV+
Sbjct: 260 AAYLFAFAGAFQMTVWALAKHRNYRKEFKDYPRQRRSIFPFVL 302

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|211938631|gb|ACJ13212.1| FI06688p [Drosophila melanogaster]

 Score =  293 bits (749), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 145/283 (51%), Positives = 187/283 (66%), Gaps = 52/283 (18%)

Query: 2   SGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           SG+  + D++  +HK   Q  + +RQ++RLE+KGK LKD+D ++SL L++GD +++KDLG
Sbjct: 25  SGATPIGDLRALIHKTLKQTPHANRQSLRLELKGKSLKDTDTLESLSLRSGDKIYVKDLG 84

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVL 120
           PQIGW TVF+AEYAGPL VYLIFY+RP + YG +AAS P S   H+AA CY VHY KR+L
Sbjct: 85  PQIGWKTVFLAEYAGPLIVYLIFYFRPELVYG-KAASLPISLTTHIAAGCYTVHYVKRLL 143

Query: 121 ETL---------------------------------------TPSV-----------FCQ 130
           ET+                                       +P +            C+
Sbjct: 144 ETIFVHRFSHATMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCMCTVWGALGAFALCE 203

Query: 131 LGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCF 190
           LGN S+H+ALR+LRPPGT VR+IPVA  NP T LFD VSCPNYTYE G+W+SFS+LTSC 
Sbjct: 204 LGNFSVHIALRNLRPPGTKVRKIPVADGNPLTKLFDLVSCPNYTYEIGAWVSFSVLTSCL 263

Query: 191 PALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            A LFA AG +QMT+WAL KH+NYKKEF DYP+QR++I PFV+
Sbjct: 264 AAYLFAFAGAFQMTIWALAKHRNYKKEFKDYPRQRRSIFPFVL 306

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24657023|ref|NP_647836.2| Sc2 [Drosophila melanogaster] gi|7292402|gb|AAF47807.1| Sc2 [Drosophila melanogaster]

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 145/283 (51%), Positives = 187/283 (66%), Gaps = 52/283 (18%)

Query: 2   SGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           SG+  + D++  +HK   Q  + +RQ++RLE+KGK LKD+D ++SL L++GD +++KDLG
Sbjct: 21  SGATPIGDLRALIHKTLKQTPHANRQSLRLELKGKSLKDTDTLESLSLRSGDKIYVKDLG 80

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVL 120
           PQIGW TVF+AEYAGPL VYLIFY+RP + YG +AAS P S   H+AA CY VHY KR+L
Sbjct: 81  PQIGWKTVFLAEYAGPLIVYLIFYFRPELVYG-KAASLPISLTTHIAAGCYTVHYVKRLL 139

Query: 121 ETL---------------------------------------TPSV-----------FCQ 130
           ET+                                       +P +            C+
Sbjct: 140 ETIFVHRFSHATMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCMCTVWGALGAFALCE 199

Query: 131 LGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCF 190
           LGN S+H+ALR+LRPPGT VR+IPVA  NP T LFD VSCPNYTYE G+W+SFS+LTSC 
Sbjct: 200 LGNFSVHIALRNLRPPGTKVRKIPVADGNPLTKLFDLVSCPNYTYEIGAWVSFSVLTSCL 259

Query: 191 PALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            A LFA AG +QMT+WAL KH+NYKKEF DYP+QR++I PFV+
Sbjct: 260 AAYLFAFAGAFQMTIWALAKHRNYKKEFKDYPRQRRSIFPFVL 302

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195491531|ref|XP_002093600.1| GE21388 [Drosophila yakuba] gi|194179701|gb|EDW93312.1| GE21388 [Drosophila yakuba]

 Score =  292 bits (748), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 144/283 (50%), Positives = 185/283 (65%), Gaps = 52/283 (18%)

Query: 2   SGSFTVKDIKKEVHKAKSQL-YPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           S +  + D++  +HK+  Q  + +RQ++RLE+KGK LKD+D ++SL L++GD V++KDLG
Sbjct: 21  SSTTPIGDLRALIHKSLKQTPHANRQSLRLELKGKSLKDTDTLESLSLRSGDKVYVKDLG 80

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVL 120
           PQIGW TVF+AEYAGPL VYLIFY+RP + YG +AAS P S   H+AA CY VHY KR+L
Sbjct: 81  PQIGWKTVFLAEYAGPLIVYLIFYFRPELVYG-KAASLPISLTTHIAAGCYTVHYVKRLL 139

Query: 121 ET--------------------------------------------------LTPSVFCQ 130
           ET                                                  L     C+
Sbjct: 140 ETIFVHRFSHATMPLRNLFKNCTYYWGFTAYVSYHVNHPQFTSPCMCTVWAALAAFALCE 199

Query: 131 LGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCF 190
           LGN S+H+ALR+LRPPGT VR+IPVA  NP T LFD+VSCPNYTYE G+W+SFS+LTSC 
Sbjct: 200 LGNFSVHIALRNLRPPGTKVRKIPVADGNPLTKLFDFVSCPNYTYEIGAWVSFSVLTSCL 259

Query: 191 PALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
            A LFA AG +QMT+WAL KH+NY+KEF DYP+QR++I PFV+
Sbjct: 260 AAYLFAFAGAFQMTIWALAKHRNYRKEFKDYPRQRRSIFPFVL 302

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543298|ref|XP_001601952.1| PREDICTED: trans-2,3-enoyl-CoA reductase-like [Nasonia vitripennis]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/283 (54%), Positives = 179/283 (63%), Gaps = 51/283 (18%)

Query: 1   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           VS + T+ +IK+++H  K   Y  RQ +RLE KGK L DS+ +KSL LK G  ++ KDLG
Sbjct: 19  VSPTTTIAEIKQQLHSLKKAPYAQRQCLRLEPKGKALSDSETVKSLQLKYGSKLYFKDLG 78

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVL 120
           PQIGW TVF+AEYAGPLFVYL  Y RPWIFYG    +K  S VAH AA C+ +HY KR+L
Sbjct: 79  PQIGWKTVFLAEYAGPLFVYLWVYQRPWIFYGDVPDAKIDS-VAHWAAACWSLHYAKRLL 137

Query: 121 ETL--------------------------------------TPS------------VFCQ 130
           ETL                                      TP               C+
Sbjct: 138 ETLFVHRFSHATMPLRNLFKNCSYYWLFTMYVAYHVNHPLYTPPSSARFVIGAAMFFLCE 197

Query: 131 LGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCF 190
           LGNLSIHLALR+LRPPGT +RRIPVAT NPFT LF++VSCPNYTYE GSW+ F+++T C 
Sbjct: 198 LGNLSIHLALRNLRPPGTTIRRIPVATGNPFTLLFNFVSCPNYTYEVGSWIGFTIMTQCL 257

Query: 191 PALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
           PA LF  AG YQM VWALGKHK YKKEF DYPK RKAI PFV+
Sbjct: 258 PAGLFMLAGAYQMAVWALGKHKLYKKEFSDYPKSRKAIFPFVL 300

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191148|gb|EFN74846.1| Synaptic glycoprotein SC2 [Camponotus floridanus]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 149/283 (52%), Positives = 183/283 (64%), Gaps = 51/283 (18%)

Query: 1   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
           V+ S T+ +IK+++HK K   Y  RQ++RLE KGK L DS+ IKSL LK    ++ KDLG
Sbjct: 19  VNSSTTIGEIKQQLHKLKKAPYIHRQSLRLEAKGKALSDSETIKSLSLKPNGKLYYKDLG 78

Query: 61  PQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVL 120
           PQIGW TVF+ EYAGPL VYL  Y RPW+FYG+   S  Y YVA+ AA+ + VHY KR+L
Sbjct: 79  PQIGWKTVFLLEYAGPLVVYLWLYQRPWLFYGNVDISN-YHYVANWAAVGWTVHYAKRLL 137

Query: 121 ETL---------------------------------------TPS-----------VFCQ 130
           ETL                                        PS           V C+
Sbjct: 138 ETLFVHRFSHATMPLRNLFKNCSYYWLFAMYVAYHTNHPLYTAPSALQFNIGAATFVLCE 197

Query: 131 LGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCF 190
           LGNLSIHLALR+LRPPG+ VR+IP+ T NPFT+LF +VSCPNYTYE GSW+ F+++TSC 
Sbjct: 198 LGNLSIHLALRNLRPPGSTVRKIPMPTENPFTALFKFVSCPNYTYEIGSWIGFTVMTSCL 257

Query: 191 PALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
           PA LFA AG YQMTVWALGKH+ YKKEF +YPK RKAI+PF++
Sbjct: 258 PAGLFAFAGAYQMTVWALGKHRAYKKEFSNYPKNRKAIIPFIL 300

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
FB|FBgn0035471	306	Sc2 "Sc2" [Drosophila melanoga	0.450	0.343	0.704	5.2e-79
WB|WBGene00000198	308	art-1 [Caenorhabditis elegans	0.459	0.347	0.616	4.8e-64
RGD|1304608	361	Tecrl "trans-2,3-enoyl-CoA red	0.527	0.340	0.419	1.8e-46
UNIPROTKB|Q5HYJ1	363	TECRL "Trans-2,3-enoyl-CoA red	0.527	0.338	0.435	3.7e-46
UNIPROTKB|Q3SZ89	363	TECRL "Trans-2,3-enoyl-CoA red	0.527	0.338	0.419	4.7e-46
MGI|MGI:2444966	361	Tecrl "trans-2,3-enoyl-CoA red	0.527	0.340	0.403	4.7e-46
UNIPROTKB|F1NVP7	361	TECRL "Uncharacterized protein	0.515	0.332	0.429	1.2e-45
UNIPROTKB|J9P679	363	TECRL "Uncharacterized protein	0.506	0.325	0.403	9.6e-44
UNIPROTKB|I3LUN1	267	TECRL "Uncharacterized protein	0.497	0.434	0.393	1.1e-42
UNIPROTKB|E9PD39	326	TECRL "Trans-2,3-enoyl-CoA red	0.527	0.377	0.435	3.5e-38

FB|FBgn0035471 Sc2 "Sc2" [Drosophila melanogaster (taxid:7227)]

 Score = 432 (157.1 bits), Expect = 5.2e-79, Sum P(2) = 5.2e-79
 Identities = 74/105 (70%), Positives = 89/105 (84%)

Query:   129 CQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS 188
             C+LGN S+H+ALR+LRPPGT VR+IPVA  NP T LFD VSCPNYTYE G+W+SFS+LTS
Sbjct:   202 CELGNFSVHIALRNLRPPGTKVRKIPVADGNPLTKLFDLVSCPNYTYEIGAWVSFSVLTS 261

Query:   189 CFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
             C  A LFA AG +QMT+WAL KH+NYKKEF DYP+QR++I PFV+
Sbjct:   262 CLAAYLFAFAGAFQMTIWALAKHRNYKKEFKDYPRQRRSIFPFVL 306

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

WB|WBGene00000198 art-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 377 (137.8 bits), Expect = 4.8e-64, Sum P(2) = 4.8e-64
 Identities = 66/107 (61%), Positives = 80/107 (74%)

Query:   127 VFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLL 186
             V  + GNLSIH+ LR+LRP GT  RRIP    NP + LF+YVSCPNYTYE  SW+ FS++
Sbjct:   202 VISEFGNLSIHILLRNLRPAGTRERRIPKPDGNPLSLLFNYVSCPNYTYEVASWIFFSIM 261

Query:   187 TSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
                 PA++F +AG  QM +WA GKH+NY KEFPDYPK RKAIVPFV+
Sbjct:   262 VQSLPAIIFTTAGFAQMAIWAQGKHRNYLKEFPDYPKNRKAIVPFVL 308

GO:0005737 "cytoplasm" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

RGD|1304608 Tecrl "trans-2,3-enoyl-CoA reductase-like" [Rattus norvegicus (taxid:10116)]

 Score = 263 (97.6 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 52/124 (41%), Positives = 79/124 (63%)

Query:     1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
             V+ + T+ D+K++ HKA  + YP R  ++LE  G  LKD   I+S+   +   ++  DLG
Sbjct:    77 VTQTSTIYDVKQKFHKACPKWYPSRIGLQLEYGGPYLKDYITIQSVAASSIITLYFTDLG 136

Query:    61 PQIGWSTVFMAEYAGPLFVYLIFYYRP-WIFYGSEAASKPYSYVAHLAALCYIVHYTKRV 119
              Q+GW+TVF+AEY+GPL +YL+FY R  +I+   E+   P   V HLA  C+ +HY + +
Sbjct:   137 QQVGWTTVFLAEYSGPLLIYLLFYLRSSYIYDVKESFRWPRHTVVHLACFCHCIHYIRLL 196

Query:   120 LETL 123
             LETL
Sbjct:   197 LETL 200

GO:0005737 "cytoplasm" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

UNIPROTKB|Q5HYJ1 TECRL "Trans-2,3-enoyl-CoA reductase-like" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
 Identities = 54/124 (43%), Positives = 79/124 (63%)

Query:     1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
             V+ S T+ D+K++ HKA  + YP R  ++LE  G  LKD   I+S+   +   ++  DLG
Sbjct:    79 VTQSSTIHDVKQKFHKACPKWYPSRVGLQLECGGPFLKDYITIQSIAASSIVTLYATDLG 138

Query:    61 PQIGWSTVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRV 119
              Q+ W+TVF+AEY GPL +YL+FY R P I+ G E+A +    V HLA  C+ +HY + +
Sbjct:   139 QQVSWTTVFLAEYTGPLLIYLLFYLRIPCIYDGKESARRLRHPVVHLACFCHCIHYIRYL 198

Query:   120 LETL 123
             LETL
Sbjct:   199 LETL 202

GO:0005737 "cytoplasm" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q3SZ89 TECRL "Trans-2,3-enoyl-CoA reductase-like" [Bos taurus (taxid:9913)]

 Score = 268 (99.4 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
 Identities = 52/124 (41%), Positives = 79/124 (63%)

Query:     1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
             V+   T+ D+K++ HKA  Q YP R  ++LE  G  LKD+  I+S+   +   ++  DLG
Sbjct:    79 VTQKSTIHDVKQKFHKACPQWYPSRVGLQLERGGPFLKDNLTIQSVAASSIVTLYFTDLG 138

Query:    61 PQIGWSTVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRV 119
              Q+ W+TVF+AEY GPL +YL+FY R P+I+   E++ +    V HLA  C+ +HY + +
Sbjct:   139 QQVSWTTVFLAEYTGPLLIYLLFYLRIPYIYNMKESSRRLCHPVVHLACFCHCIHYIRYL 198

Query:   120 LETL 123
             LETL
Sbjct:   199 LETL 202

GO:0016021 "integral to membrane" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:2444966 Tecrl "trans-2,3-enoyl-CoA reductase-like" [Mus musculus (taxid:10090)]

 Score = 259 (96.2 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
 Identities = 50/124 (40%), Positives = 79/124 (63%)

Query:     1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
             V+ + T+ D+K++ HKA  + YP R  ++LE  G  L+D   ++S+   +   ++  DLG
Sbjct:    77 VTQTSTIHDVKQKFHKACPKWYPSRIGLQLEYGGPYLRDYITVQSVAASSIITLYFTDLG 136

Query:    61 PQIGWSTVFMAEYAGPLFVYLIFYYRP-WIFYGSEAASKPYSYVAHLAALCYIVHYTKRV 119
              Q+GW+TVF+AEY+GPL +YL+FY R  +I+   E+   P   V HLA  C+ +HY + +
Sbjct:   137 QQVGWTTVFLAEYSGPLLIYLLFYLRSSYIYDVKESTRWPRHPVVHLAFFCHCIHYIRLL 196

Query:   120 LETL 123
             LETL
Sbjct:   197 LETL 200

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1NVP7 TECRL "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 266 (98.7 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 52/121 (42%), Positives = 75/121 (61%)

Query:     4 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQI 63
             S T+ D+K + HKA  Q YP R  ++LE  G  LKDS +I+SL   +   ++  DLG Q+
Sbjct:    80 SSTLLDVKHKFHKACPQWYPSRVGLQLERNGPYLKDSVNIQSLAASSIITLYFTDLGQQV 139

Query:    64 GWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSY-VAHLAALCYIVHYTKRVLET 122
             GW+T F+ EY GPL +YL+FY R    Y    ++K + + V HLA  C+ +HY + +LET
Sbjct:   140 GWTTFFLTEYTGPLLIYLLFYIRLSTIYDQVESTKNFRHPVVHLACFCHCLHYIRHLLET 199

Query:   123 L 123
             L
Sbjct:   200 L 200

GO:0005737 "cytoplasm" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|J9P679 TECRL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 254 (94.5 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 48/119 (40%), Positives = 74/119 (62%)

Query:     6 TVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGW 65
             T+ D+K++ HKA    YP R  ++LE  G  LKD   ++S+   +   ++  DLG Q+ W
Sbjct:    84 TIHDVKQKFHKACPNWYPSRVGLQLEQGGPFLKDYITVQSIAASSIVTLYFTDLGRQVSW 143

Query:    66 STVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETL 123
              T+F+AEY GPL +YL+FY R P+I+   E++ +    V HLA  C+ +HY + +LETL
Sbjct:   144 ITIFLAEYTGPLLIYLLFYLRIPYIYDMKESSRRLRHPVVHLACFCHCIHYIRYLLETL 202

GO:0016021 "integral to membrane" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|I3LUN1 TECRL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 239 (89.2 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 46/117 (39%), Positives = 69/117 (58%)

Query:   117 KRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYE 176
             K++  +    + C+ GN  I++ L      G+N    P    NPFT +F  VSCPNYTYE
Sbjct:   152 KQITVSAINFLICEAGNHFINVMLAHPNHTGSNAC-FPSPNYNPFTWMFFLVSCPNYTYE 210

Query:   177 FGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFVI 233
              GSW+SF+++T   P  +F      QM++WA  KHKNY K+F  Y  ++ A++PF++
Sbjct:   211 IGSWISFTVMTQTLPVGIFTLLISIQMSLWAQKKHKNYLKKFNSYIHKKSAMIPFIL 267

GO:0016021 "integral to membrane" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E9PD39 TECRL "Trans-2,3-enoyl-CoA reductase-like" [Homo sapiens (taxid:9606)]

 Score = 275 (101.9 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 54/124 (43%), Positives = 79/124 (63%)

Query:     1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
             V+ S T+ D+K++ HKA  + YP R  ++LE  G  LKD   I+S+   +   ++  DLG
Sbjct:    79 VTQSSTIHDVKQKFHKACPKWYPSRVGLQLECGGPFLKDYITIQSIAASSIVTLYATDLG 138

Query:    61 PQIGWSTVFMAEYAGPLFVYLIFYYR-PWIFYGSEAASKPYSYVAHLAALCYIVHYTKRV 119
              Q+ W+TVF+AEY GPL +YL+FY R P I+ G E+A +    V HLA  C+ +HY + +
Sbjct:   139 QQVSWTTVFLAEYTGPLLIYLLFYLRIPCIYDGKESARRLRHPVVHLACFCHCIHYIRYL 198

Query:   120 LETL 123
             LETL
Sbjct:   199 LETL 202

GO:0005737 "cytoplasm" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55C17	TECR_DICDI	1, ., 3, ., 1, ., 3, 8	0.3576	0.9184	0.7133	yes	N/A
Q3ZCD7	TECR_BOVIN	1, ., 3, ., 1, ., 3, 8	0.4341	0.9785	0.7402	yes	N/A
Q9N5Y2	TECR_CAEEL	1, ., 3, ., 1, ., 9, 3	0.4475	1.0	0.7564	yes	N/A
O94511	YN67_SCHPO	1, ., 3, ., 1, ., 3, 8	0.312	0.8326	0.6576	yes	N/A
Q64232	TECR_RAT	1, ., 3, ., 1, ., 3, 8	0.4341	0.9785	0.7402	yes	N/A
Q9NZ01	TECR_HUMAN	1, ., 3, ., 1, ., 3, 8	0.4341	0.9785	0.7402	yes	N/A
Q9CY27	TECR_MOUSE	1, ., 3, ., 1, ., 3, 8	0.4377	0.9785	0.7402	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	233
PLN02560	308	PLN02560, PLN02560, enoyl-CoA reductase	2e-50
pfam02544	150	pfam02544, Steroid_dh, 3-oxo-5-alpha-steroid 4-deh	2e-26
cd01801	77	cd01801, Tsc13_N, Ubiquitin-like domain of Tsc13	7e-16
PLN02392	260	PLN02392, PLN02392, probable steroid reductase DET	7e-08
PLN03164	323	PLN03164, PLN03164, 3-oxo-5-alpha-steroid 4-dehydr	2e-06
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	3e-06
cd01805	77	cd01805, RAD23_N, Ubiquitin-like domain of RAD23	9e-04
cd00196	69	cd00196, UBQ, Ubiquitin-like proteins	0.002
cd01812	71	cd01812, BAG1_N, Ubiquitin-like domain of BAG1	0.003

>gnl|CDD|178174 PLN02560, PLN02560, enoyl-CoA reductase

 Score =  166 bits (421), Expect = 2e-50
 Identities = 96/295 (32%), Positives = 130/295 (44%), Gaps = 69/295 (23%)

Query: 1   VSGSFTVKDIKKEVHKAKSQLYPDRQAVRL-----EIKGKILKDSDDIKSLGLKNGDMVF 55
           V  S TV D+KK +HK K + YP RQ + L     + +  +L DS  +K  GL +G  V 
Sbjct: 20  VPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV 79

Query: 56  IKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIF-YGSEAASKPYSYVAHLAALCYIVH 114
            KDLGPQ+ + T+F  EY GPL +Y +FY+ P ++ Y    A +    V   A   +  H
Sbjct: 80  FKDLGPQVSYRTLFFFEYLGPLLIYPLFYFFPQVYKYFGYPARRVIHPVQTYAMYYWCFH 139

Query: 115 YTKRVLETL--------------------------------------TP----------- 125
           Y KR+LET                                       TP           
Sbjct: 140 YAKRILETFFVHRFSHATSPLFNVFRNCAYYWTFGAYIAYFVNHPLYTPVSETQMKVGFG 199

Query: 126 -SVFCQLGNLSIHLALRDLRPP-GTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSF 183
             + CQL N   H+ LR+LR P G    +IP         LF+YV+C NYT E   WL F
Sbjct: 200 FGLVCQLANFYCHIILRNLRKPDGKGGYQIPRG------FLFNYVTCANYTTEIYQWLGF 253

Query: 184 SLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEF------PDYPKQRKAIVPFV 232
           ++ T      LF +     MT WAL KH+  KK F      P YP++   + PF+
Sbjct: 254 NIATQTVAGYLFLAVAAAIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL 308

Length = 308

>gnl|CDD|217095 pfam02544, Steroid_dh, 3-oxo-5-alpha-steroid 4-dehydrogenase

 Score = 99.4 bits (248), Expect = 2e-26
 Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 102 YVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPF 161
           Y ++            R L  +   V   L N+   + LR LR PG    +IP       
Sbjct: 25  YNSYYQPYAEDWVTDPRFLIGIGLFVTGMLINIKSDIILRTLRKPGNTGYKIP------R 78

Query: 162 TSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDY 221
             LF+ VSCPNY  E   W+ ++L T   PAL FA   +  +T  A   HK Y K+F  Y
Sbjct: 79  GGLFELVSCPNYFGEIMEWIGYALATWSLPALAFAFFTVCNLTPRAKAHHKWYLKKFEKY 138

Query: 222 PKQRKAIVPFV 232
           PK RKA++PFV
Sbjct: 139 PKSRKALIPFV 149

This family consists of 3-oxo-5-alpha-steroid 4-dehydrogenases, EC:1.3.99.5 Also known as Steroid 5-alpha-reductase, the reaction catalyzed by this enzyme is: 3-oxo-5-alpha-steroid + acceptor <=> 3-oxo-delta(4)-steroid + reduced acceptor. The Steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during fetal development. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related enzyme is also found in plants is DET2, a steroid reductase from Arabidopsis. Mutations in this enzyme cause defects in light-regulated development. Length = 150

>gnl|CDD|176396 cd01801, Tsc13_N, Ubiquitin-like domain of Tsc13

 Score = 69.8 bits (171), Expect = 7e-16
 Identities = 26/58 (44%), Positives = 39/58 (67%)

Query: 2  SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59
          SG  T+ D+KK + K+  QL  +RQ++RLE KGK LKD D +  LG+  G  ++++DL
Sbjct: 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVRDL 77

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions. Length = 77

>gnl|CDD|178015 PLN02392, PLN02392, probable steroid reductase DET2

 Score = 51.4 bits (123), Expect = 7e-08
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 160 PFTSLFDYVSCPNYTYEFGSWLSFSLLT---SCFPALLFASAGMYQMTVWALGKHKNYKK 216
           P    F+ VSCPNY  E   WL ++++T   + F   L+  + +      A   HK Y +
Sbjct: 186 PRGGWFELVSCPNYFGEIVEWLGWAVMTWSWAGFGFFLYTCSNLVPR---ACANHKWYLE 242

Query: 217 EF-PDYPKQRKAIVPFVI 233
           +F  DYPK RKA++PF+ 
Sbjct: 243 KFGEDYPKGRKAVIPFLY 260

Length = 260

>gnl|CDD|215610 PLN03164, PLN03164, 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 24/86 (27%)

Query: 160 PFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVW------------- 206
           P+   F+ VSCP+Y  E   +            LL AS G   +T+W             
Sbjct: 248 PYGDWFEMVSCPHYLAEIVIYA----------GLLIASGGT-DLTIWLLFGFVVANLTFA 296

Query: 207 ALGKHKNYKKEFPDYPKQRKAIVPFV 232
           A   H+ Y ++F +YP+ R AI+PFV
Sbjct: 297 AAETHRWYLQKFENYPRNRYAIIPFV 322

Length = 323

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59
          VS   TV ++K ++   K  + P++Q  RL   GKILKD   +   G+++G  + +   
Sbjct: 14 VSPDDTVAELKAKIAA-KEGVPPEQQ--RLIYAGKILKDDKTLSDYGIQDGSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|176400 cd01805, RAD23_N, Ubiquitin-like domain of RAD23

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYP-DRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56
          V    TV ++K+++ + K   YP ++Q  +L   GKILKD   ++   +   D V +
Sbjct: 17 VDPDDTVAELKEKIEEEKGCDYPPEQQ--KLIYSGKILKDDTTLEEYKIDEKDFVVV 71

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL). Length = 77

>gnl|CDD|176352 cd00196, UBQ, Ubiquitin-like proteins

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 3/56 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56
          V    TV D+K+++ K K  L P++Q  RL + GKIL DS  ++  GL++GD + +
Sbjct: 14 VPSGTTVADLKEKLAK-KLGLPPEQQ--RLLVNGKILPDSLTLEDYGLQDGDELVL 66

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate. Length = 69

>gnl|CDD|176407 cd01812, BAG1_N, Ubiquitin-like domain of BAG1

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56
          +S   T  D+KK +    + + P  Q  +L  KGK   D++ +   G+K+G  V +
Sbjct: 16 ISSQATFGDLKKML-APVTGVEPRDQ--KLIFKGKERDDAETLDMSGVKDGSKVML 68

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP). Length = 71

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
PLN02560	308	enoyl-CoA reductase	100.0
KOG1639|consensus	297		100.0
KOG1638|consensus	257		100.0
PLN02392	260	probable steroid reductase DET2	100.0
PLN03164	323	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal	100.0
PF02544	150	Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase	100.0
KOG1640|consensus	304		99.97
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.55
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	99.5
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.47
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.45
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.44
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.41
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.41
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.4
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.4
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.39
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.39
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.38
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.35
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.33
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.32
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.31
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.31
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.31
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.3
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.3
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.29
PTZ00044	76	ubiquitin; Provisional	99.29
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.29
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.22
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.22
KOG0005|consensus	70		99.18
KOG0004|consensus	156		99.16
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.1
KOG0003|consensus	128		99.09
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.09
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.07
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	98.97
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	98.96
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	98.95
KOG0010|consensus	493		98.9
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	98.85
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.84
PF06966	235	DUF1295: Protein of unknown function (DUF1295); In	98.7
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	98.38
COG3752	272	Steroid 5-alpha reductase family enzyme [General f	98.23
KOG0011|consensus	340		98.22
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.21
KOG0001|consensus	75		98.18
KOG4248|consensus	1143		98.07
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.01
PF04191	106	PEMT: Phospholipid methyltransferase ; InterPro: I	97.86
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	97.84
PF01222	432	ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 fam	97.75
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	97.59
KOG4495|consensus	110		97.45
COG2020	187	STE14 Putative protein-S-isoprenylcysteine methylt	97.33
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	96.99
KOG1872|consensus	473		96.88
KOG3493|consensus	73		96.44
KOG0006|consensus	446		96.35
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	96.22
KOG1435|consensus	428		96.16
KOG4650|consensus	311		96.06
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.01
KOG3206|consensus	234		95.16
PF04140	94	ICMT: Isoprenylcysteine carboxyl methyltransferase	94.53
KOG0013|consensus	231		94.52
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	93.62
KOG1769|consensus	99		93.43
PF10209	122	DUF2340: Uncharacterized conserved protein (DUF234	91.09
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	90.23
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	90.03
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	90.01
KOG2628|consensus	201		88.5
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	88.34
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	86.19
PF13019	162	Telomere_Sde2: Telomere stability and silencing	84.83
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	84.62
PF10407	73	Cytokin_check_N: Cdc14 phosphatase binding protein	83.99
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	83.21
COG1755	172	Uncharacterized protein conserved in bacteria [Fun	82.89
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	81.23
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	81.2
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	81.16

>PLN02560 enoyl-CoA reductase

Probab=100.00  E-value=1.9e-74  Score=521.12  Aligned_cols=225  Identities=42%  Similarity=0.766  Sum_probs=202.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEc-----CCCcccCCchhhhhcCCCCCceEEEecCCCccchhhhhhHHhhh
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-----IKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAG   75 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~-----~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~qi~w~~vf~~Ey~g   75 (233)
                      +++++||+|||++|+++...++++||||+++     ++|+.|+|+++|+|+|+++|+||++|||||||||||||++||+|
T Consensus        20 v~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~kDLGpQi~wrtVF~~EY~G   99 (308)
T PLN02560         20 VPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVFKDLGPQVSYRTLFFFEYLG   99 (308)
T ss_pred             cCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEEEeCCCcCchhhhHHHHhhh
Confidence            4789999999999999933358999999985     24568999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhccccccCC-C-CCCCchhHHHHHHHHHHHHHHHHHHHhhh---------ch-------------------
Q psy9586          76 PLFVYLIFYYRPWIFYGS-E-AASKPYSYVAHLAALCYIVHYTKRVLETL---------TP-------------------  125 (233)
Q Consensus        76 pl~~~~~~~~~~~~i~~~-~-~~~~~~~~~~~l~~~~~~~Hy~kR~~et~---------~p-------------------  125 (233)
                      ||+++++||++++ +|+. . ....+.+..|+++++||++||+||++||+         +|                   
T Consensus       100 Pl~i~~l~y~~~~-~y~~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~Et~fvhrfS~~tmpl~n~~~n~~~Yw~~~~~~~  178 (308)
T PLN02560        100 PLLIYPLFYFFPQ-VYKYFGYPARRVIHPVQTYAMYYWCFHYAKRILETFFVHRFSHATSPLFNVFRNCAYYWTFGAYIA  178 (308)
T ss_pred             HHHHHHHHHHhhh-hhcccccCcCCCCchHHHHHHHHHHHHHHHHhhheeeeEeecCCCccHHHHHHHHHHHHHHHHHHh
Confidence            9999999999888 9862 1 11245678899999999999999999998         11                   


Q ss_pred             ----------------------hhhHhhhhHHHHHHHHhcCCC-CCcccccccCCCCCCCCccceecccchhhHHHHHHH
Q psy9586         126 ----------------------SVFCQLGNLSIHLALRDLRPP-GTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLS  182 (233)
Q Consensus       126 ----------------------~~~~~~~n~~~h~~L~~LR~~-~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~  182 (233)
                                            .++||.+|++||.+|++||++ |+++|+||+      ||||++|||||||+||++|+|
T Consensus       179 y~~~~~~~~~~~~~~~~~g~~lf~~~~~~N~~~h~~L~~LR~~~g~~~y~IP~------g~lF~~VscPnY~~Ei~~W~g  252 (308)
T PLN02560        179 YFVNHPLYTPVSETQMKVGFGFGLVCQLANFYCHIILRNLRKPDGKGGYQIPR------GFLFNYVTCANYTTEIYQWLG  252 (308)
T ss_pred             hhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeCCC------CCCcCeecCCcHHHHHHHHHH
Confidence                                  178899999999999999998 998888887      899999999999999999999


Q ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHHHhHHHHhhCCC------CCCCceeeeccc
Q psy9586         183 FSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPD------YPKQRKAIVPFV  232 (233)
Q Consensus       183 f~l~~~~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F~~------yp~~RkaiIPfi  232 (233)
                      |+++++++++++|++++++||.+||.+|||||+++|+|      ||++|++++||+
T Consensus       253 f~~~t~~~~~~~F~~~~~~~m~~wA~~kh~~Y~k~F~d~~~~~~yp~~~~~~pp~~  308 (308)
T PLN02560        253 FNIATQTVAGYLFLAVAAAIMTNWALAKHRRLKKLFDGKDGRPKYPRRWVILPPFL  308 (308)
T ss_pred             HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCCceEeCCCcC
Confidence            99999999999999999999999999999999999987      999777777764

>KOG1639|consensus

Probab=100.00  E-value=1e-71  Score=480.04  Aligned_cols=224  Identities=51%  Similarity=0.978  Sum_probs=208.5

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCcee--EEEcCCCcccCCchhhhhcCCCCCceEEEecCCCccchhhhhhHHhhhhHHH
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQA--VRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIGWSTVFMAEYAGPLFV   79 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQr--L~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~qi~w~~vf~~Ey~gpl~~   79 (233)
                      +.+.|++|++++|+++..++.+.|||  |..+++||.|.|+.+|+|||..+|.|+++|||||||||||||+.||+||+++
T Consensus        20 s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vKDLGpQI~wrtvF~~EYlGPLlv   99 (297)
T KOG1639|consen   20 SGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVKDLGPQISWRTVFFAEYLGPLLV   99 (297)
T ss_pred             CCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEeccCCccchhhhhHHHhhchHHh
Confidence            45679999999888875788885555  5556889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhh---------ch-------------------------
Q psy9586          80 YLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETL---------TP-------------------------  125 (233)
Q Consensus        80 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~et~---------~p-------------------------  125 (233)
                      |++||+++..+||...   ..++.|++|+.+|++||.||++||+         +|                         
T Consensus       100 y~~Fy~~p~~vyg~~~---~i~~~~~iA~~~~~~Hy~KRl~ET~FvhrFs~atmp~~nlfKnC~~yw~~~~~vaYfvnhp  176 (297)
T KOG1639|consen  100 YPLFYYRPTLVYGKDA---VIHPLQRIAFFLWLFHYGKRLLETIFVHRFSLATMPIFNLFKNCFYYWGFSALVAYFVNHP  176 (297)
T ss_pred             HhHHHhchheeechhh---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHhhHHHHHHHHHHHHHhcCC
Confidence            9999999999999754   4788999999999999999999998         11                         


Q ss_pred             ------------------hhhHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhh
Q psy9586         126 ------------------SVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLT  187 (233)
Q Consensus       126 ------------------~~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~  187 (233)
                                        .++||++||+||..||+||+.|++.++||.    |.|.+|++||||||++|+..|++|++|+
T Consensus       177 ~~t~~~~~~~~~~~~l~~fv~~el~NF~~HI~LR~lrp~g~k~r~ip~----~~g~lFnlvscpNYt~Ev~sWi~F~i~t  252 (297)
T KOG1639|consen  177 LFTPPKLGKLQVKLGLGGFVLCELGNFSCHILLRNLRPAGSKKRRIPL----PDGFLFNLVSCPNYTYEVGSWIGFAIMT  252 (297)
T ss_pred             CCCCcchhhhhhhhhhHHHhhhhhcceeeEeehhhccCCcCccceeec----CCccEEEEEecCCcceehHHHHHHHHHH
Confidence                              189999999999999999999999999998    6789999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHhHHHHhhCCCCCCCceeeeccc
Q psy9586         188 SCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFV  232 (233)
Q Consensus       188 ~~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F~~yp~~RkaiIPfi  232 (233)
                      +|+++++|+.++++||.+||++||+.|+|+|+|||++|++||||+
T Consensus       253 q~l~a~lFl~vg~aqMtiWA~~Kh~~ylKeFp~Ypr~r~~iiPFv  297 (297)
T KOG1639|consen  253 QCLAAYLFLTVGAAQMTIWAKGKHRRYLKEFPDYPRRRKIIIPFV  297 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHhHhhhcccCCccccccCCCC
Confidence            999999999999999999999999999999999999999999996

>KOG1638|consensus

Probab=100.00  E-value=6.3e-43  Score=300.78  Aligned_cols=171  Identities=35%  Similarity=0.583  Sum_probs=137.1

Q ss_pred             hhcCCCCCceEEE-ecCCCccchhhhhhHHhhhhHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q psy9586          44 KSLGLKNGDMVFI-KDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLET  122 (233)
Q Consensus        44 ~~ygv~~~~tl~v-kdlg~qi~w~~vf~~Ey~gpl~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~et  122 (233)
                      ..||.-+++.=-. ..+.|+++|   |++|...  +..++..+.+    +... +.   ..-.+...++++||.+|.++.
T Consensus        34 s~yGr~s~s~~~~~~~ip~~~aw---~iqe~Pa--f~~pl~~~~~----~~~~-~~---~~~~~L~~~flvHYf~R~liy  100 (257)
T KOG1638|consen   34 SGYGRHSSSLNPTKTRIPPRIAW---FIQELPA--FAIPLYSLFR----GPSS-DL---PPGLLLLSAFLVHYFHRALIY  100 (257)
T ss_pred             cCCceecCCCcchhcCCCchhHH---HHhcCcH--HHhhHHHhcC----CCcc-cc---cccHHHHHHHHHHHHHHHHhh
Confidence            4455544433221 239999999   4888544  3333332211    1111 01   224677788999999999997


Q ss_pred             h--------ch--------------------------------------------hhhHhhhhHHHHHHHHhcCCCCCcc
Q psy9586         123 L--------TP--------------------------------------------SVFCQLGNLSIHLALRDLRPPGTNV  150 (233)
Q Consensus       123 ~--------~p--------------------------------------------~~~~~~~n~~~h~~L~~LR~~~~~~  150 (233)
                      +        .|                                            .++|+.+|+++|.+|++|||+|.++
T Consensus       101 pf~~~~~~~~p~~i~a~a~~F~~~NG~lqg~y~~~~~~~~d~~~~~~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~  180 (257)
T KOG1638|consen  101 PFLIRSSNPSPAIIVALAIAFCTLNGTLQGLYLSHYQLYEDPWVTDIRFLIGVVLFVTGMLINIYSDNILRTLRKPGGKG  180 (257)
T ss_pred             eeeecCCCCccHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCc
Confidence            7        01                                            1888999999999999999999999


Q ss_pred             cccccCCCCCCCCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhHHHHhhCCCCCCCceeeec
Q psy9586         151 RRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVP  230 (233)
Q Consensus       151 ~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F~~yp~~RkaiIP  230 (233)
                      |+||+      ||||+||||||||+||++|+|+++++++++++.|+++++++|.+||..+|+||+|+|+||||+|||+||
T Consensus       181 YkIP~------GglFeyVsCPNYfgEiieW~Gyal~~ws~p~~aFa~ft~~~l~pRA~ahH~WY~~kFe~YPk~RkAlIP  254 (257)
T KOG1638|consen  181 YKIPR------GGLFEYVSCPNYFGEIIEWIGYALASWSLPALAFAFFTICNLGPRAYAHHKWYLKKFEDYPKNRKALIP  254 (257)
T ss_pred             eecCC------CceEEEeecchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHhhccCCccceeecc
Confidence            88887      899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q psy9586         231 FVI  233 (233)
Q Consensus       231 fi~  233 (233)
                      ||+
T Consensus       255 fvf  257 (257)
T KOG1638|consen  255 FVF  257 (257)
T ss_pred             ccC
Confidence            986

>PLN02392 probable steroid reductase DET2

Probab=100.00  E-value=3.3e-40  Score=290.78  Aligned_cols=156  Identities=27%  Similarity=0.433  Sum_probs=130.8

Q ss_pred             cCCCccchhhhhhHHhhhhHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhh--c----------h
Q psy9586          58 DLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETL--T----------P  125 (233)
Q Consensus        58 dlg~qi~w~~vf~~Ey~gpl~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~et~--~----------p  125 (233)
                      .++++++|.   +||..++++...+ +.     .++.    .....+.+.++++++||++|.+..+  +          |
T Consensus        45 ~vp~rlaW~---lmE~P~~~~~~~~-~~-----~~~~----~~~~~~~vl~~lf~~HY~~Ra~i~Pl~~~~~~~~~~~~p  111 (260)
T PLN02392         45 TVSPPLAWF---LMESPTLWLTLLL-FP-----LGQH----FTNPKALLLMSPYLLHYFHRTCIYPLRLYRSTSQQNTKG  111 (260)
T ss_pred             CCCchHHHH---HhhccHHHHHHHH-Hh-----cCcc----ccccHHHHHHHHHHHHHHhHHHhhhhhccccccccCCCC
Confidence            588999995   9998886654322 21     1221    1223357888899999999988765  0          1


Q ss_pred             -----------------------------------------------hhhHhhhhHHHHHHHHhcCCCCCcccccccCCC
Q psy9586         126 -----------------------------------------------SVFCQLGNLSIHLALRDLRPPGTNVRRIPVATS  158 (233)
Q Consensus       126 -----------------------------------------------~~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~  158 (233)
                                                                     .++|+.+|+++|.+|++|||+| ++|+||+   
T Consensus       112 ~p~~i~~~a~~F~~~Ng~lq~~wl~~~~~~y~~~~~~~~~~~iG~~lF~~g~~~N~~sh~~L~~LRk~g-~~Y~iP~---  187 (260)
T PLN02392        112 FPVSMALLAFGFNLLNAYLQARWVSHYKDDYEDGGWFWWRFFGGLVVFLWGMRINVWSDRVLVGLKREG-GGYKVPR---  187 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhccCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CeeECCC---
Confidence                                                           1788999999999999999987 5666665   


Q ss_pred             CCCCCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhHHHHhhCC-CCCCCceeeecccC
Q psy9586         159 NPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEFP-DYPKQRKAIVPFVI  233 (233)
Q Consensus       159 ~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F~-~yp~~RkaiIPfi~  233 (233)
                         ||+|++|||||||+||++|+||+++++++++++|++++++||.+||.++||||+|||+ |||++|||+||||+
T Consensus       188 ---GGlF~~VscPnYf~EileW~gfal~t~s~~~~~F~~~~~~nl~~rA~~~hkwY~~kFg~~ypk~RkaiIPfi~  260 (260)
T PLN02392        188 ---GGWFELVSCPNYFGEIVEWLGWAVMTWSWAGFGFFLYTCSNLVPRACANHKWYLEKFGEDYPKGRKAVIPFLY  260 (260)
T ss_pred             ---CCCcCeEcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCCeEecCccC
Confidence               8999999999999999999999999999999999999999999999999999999996 79999999999986

>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional

Probab=100.00  E-value=2.4e-37  Score=278.29  Aligned_cols=101  Identities=27%  Similarity=0.451  Sum_probs=91.1

Q ss_pred             hhHhhhhHHHHHHHHhcCC--CCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhc--chhHHHHHHHHHHH
Q psy9586         127 VFCQLGNLSIHLALRDLRP--PGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS--CFPALLFASAGMYQ  202 (233)
Q Consensus       127 ~~~~~~n~~~h~~L~~LR~--~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~--~~~~~~f~~~~~~~  202 (233)
                      ++|+..|++||.+|++||+  +|+++|+||+      ||||++|||||||+||++|+||+++++  +...++|++++++|
T Consensus       219 lig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~------GglF~~VSCPHYf~EIliw~gfal~t~~~~~~~~l~~~~v~~n  292 (323)
T PLN03164        219 LWGWIHQYRCHAILGSLREHKKQADEYVIPY------GDWFEMVSCPHYLAEIVIYAGLLIASGGTDLTIWLLFGFVVAN  292 (323)
T ss_pred             HHHHHHHHHHHHHHHHcCcCCCCCceEECCC------CCCcCeEcCCcHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence            4567899999999999994  4556666665      899999999999999999999999997  46668888999999


Q ss_pred             HHHHHHHHhHHHHhhCCCCCCCceeeecccC
Q psy9586         203 MTVWALGKHKNYKKEFPDYPKQRKAIVPFVI  233 (233)
Q Consensus       203 m~~~A~~~h~wY~~~F~~yp~~RkaiIPfi~  233 (233)
                      |.+||.++|+||++||+|||++||||||||+
T Consensus       293 L~~~A~~tHkWY~kkF~dYPk~RkAIIPfI~  323 (323)
T PLN03164        293 LTFAAAETHRWYLQKFENYPRNRYAIIPFVY  323 (323)
T ss_pred             HHHHHHHHHHHHHHhccccccCceEecCccC
Confidence            9999999999999999999999999999986

>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1

Probab=100.00  E-value=4.9e-37  Score=251.58  Aligned_cols=101  Identities=42%  Similarity=0.842  Sum_probs=97.5

Q ss_pred             hhHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy9586         127 VFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVW  206 (233)
Q Consensus       127 ~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m~~~  206 (233)
                      ++|+.+|+++|.+|++||++|+++|++|+      ||+|++||||||++|+++|+||+++++++++++|++++++||.+|
T Consensus        50 ~~g~~~n~~~h~~L~~lr~~~~~~y~iP~------gg~F~~vscP~Y~~Eil~w~~f~l~~~~~~~~~f~~~~~~~l~~~  123 (150)
T PF02544_consen   50 LIGSIGNFYSHLILANLRKPGSKKYKIPK------GGLFEYVSCPHYFFEILIWIGFALLTGSWPSYAFALFVVVNLSPR  123 (150)
T ss_pred             HHHHHHHHHHHHHHHhcccccCCceeCCC------CCCcceeeehhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            59999999999999999999998888777      899999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHhhCCCCCCCceeeecccC
Q psy9586         207 ALGKHKNYKKEFPDYPKQRKAIVPFVI  233 (233)
Q Consensus       207 A~~~h~wY~~~F~~yp~~RkaiIPfi~  233 (233)
                      |.++|+||+++|+|||++||++||||+
T Consensus       124 A~~~h~wY~~~F~~yp~~R~~lIPfi~  150 (150)
T PF02544_consen  124 AVQTHRWYKKKFKEYPKNRKALIPFIF  150 (150)
T ss_pred             HHHHHHHHHHHCccccCCCeEecCccC
Confidence            999999999999999999999999996

3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane

>KOG1640|consensus

Probab=99.97  E-value=8.2e-31  Score=230.84  Aligned_cols=174  Identities=27%  Similarity=0.394  Sum_probs=136.2

Q ss_pred             EEEecCCCccchhhhhhHHhhhhHHHHHHHHhccccccCCCCC--------------------CCchhHHHHHHHHHHHH
Q psy9586          54 VFIKDLGPQIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAA--------------------SKPYSYVAHLAALCYIV  113 (233)
Q Consensus        54 l~vkdlg~qi~w~~vf~~Ey~gpl~~~~~~~~~~~~i~~~~~~--------------------~~~~~~~~~l~~~~~~~  113 (233)
                      +.++.+..+..|..+|.+  +|-+....++|+.....+....+                    ....+....++..+...
T Consensus        56 ~~~~kf~VPK~wF~HFY~--i~vlw~~l~l~~~~~~~~~~~~~~~~h~fl~~~~~~~~~~~e~~~~~~~~~~~~~l~~s~  133 (304)
T KOG1640|consen   56 LLVTKFTVPKRWFSHFYA--IGVLWNPLLLYFLLSTNFPIAMPSVEHRFLVILGVFIFKNIEEDLMYSLTLQVLLLIYSL  133 (304)
T ss_pred             HHhHhhcCcHHHHHHHHH--HHHHHHHHHHHHHHHhhcCcCchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence            567888889999999987  45554444555544444332200                    00111223445557899


Q ss_pred             HHHHHHHhhh---------------------------------------ch----------------hhhHhhhhHHHHH
Q psy9586         114 HYTKRVLETL---------------------------------------TP----------------SVFCQLGNLSIHL  138 (233)
Q Consensus       114 Hy~kR~~et~---------------------------------------~p----------------~~~~~~~n~~~h~  138 (233)
                      |-.+|++||.                                       .|                .++|.+.|..||.
T Consensus       134 ~~~rrlYet~fv~~~~~~s~mnl~hy~vg~V~y~vl~~~l~~~~~g~~~~~~~~~l~~i~q~~g~~iF~i~s~~Qy~~h~  213 (304)
T KOG1640|consen  134 HTLRRLYETLFVLVYSVNSKMNLGHYLVGYVFYTVLSLALLLCTNGSSEGPNFNSLSSILQWLGLGIFAIGSIHQYASHE  213 (304)
T ss_pred             HHHHHHHHHHHheeeeeccccchhhHHHHHHHHHHHHHHHHHhhcccccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998                                       00                1788889999999


Q ss_pred             HHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhHHHHhhC
Q psy9586         139 ALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVWALGKHKNYKKEF  218 (233)
Q Consensus       139 ~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m~~~A~~~h~wY~~~F  218 (233)
                      +|.|+|+...    .-..|.+|+||||++||||||++||++|+|.+....++..|+.+.++++|++..|..+|+||+++|
T Consensus       214 iL~nlrk~~~----~~~~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~~~iwLv~~~V~~N~t~aA~~Th~wY~~kF  289 (304)
T KOG1640|consen  214 ILGNLRKYPR----QAKAYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPDLTIWLVFGWVAANLTYAALETHRWYLKKF  289 (304)
T ss_pred             HHHHHhhhhh----hhhheecCCCCEeeecCChHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999865    234567777999999999999999999999999989999888888889998899999999999999


Q ss_pred             CCCCCCceeeecccC
Q psy9586         219 PDYPKQRKAIVPFVI  233 (233)
Q Consensus       219 ~~yp~~RkaiIPfi~  233 (233)
                      +|||++|+|+|||++
T Consensus       290 ~~yp~~R~AiiPfl~  304 (304)
T KOG1640|consen  290 ENYPKNRHAIIPFLY  304 (304)
T ss_pred             ccCcccccccccccC
Confidence            999999999999986

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.55  E-value=6.2e-15  Score=107.12  Aligned_cols=53  Identities=17%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.|||++|+++ .|++++||||++  +|+.|+|+++|++||+++|+|||+
T Consensus        18 v~~~~TV~~LK~~I~~~-~~~~~~~qrLi~--~Gk~L~D~~tL~~ygi~~~stv~l   70 (73)
T cd01791          18 CNPDDTIGDLKKLIAAQ-TGTRPEKIVLKK--WYTIFKDHISLGDYEIHDGMNLEL   70 (73)
T ss_pred             eCCCCcHHHHHHHHHHH-hCCChHHEEEEe--CCcCCCCCCCHHHcCCCCCCEEEE
Confidence            57899999999999999 699999999999  799999999999999999999987

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=99.50  E-value=3.9e-14  Score=103.51  Aligned_cols=58  Identities=45%  Similarity=0.711  Sum_probs=53.8

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      ++++||+|||++|++++..++++||||++..+|+.|+|+++|+++|+++|+|||||||
T Consensus        20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyvKDL   77 (77)
T cd01801          20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYVRDL   77 (77)
T ss_pred             CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEEeeC
Confidence            4789999999999998556789999999888999999999999999999999999997

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.47  E-value=5.3e-14  Score=101.86  Aligned_cols=53  Identities=26%  Similarity=0.303  Sum_probs=50.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||+|||++|+++ +|+|+++|||++  +|++|+|+++|++||+++++||++
T Consensus        15 v~~~~tV~~lK~~i~~~-~gip~~~q~Li~--~Gk~L~D~~tL~~~~i~~~~tl~l   67 (74)
T cd01793          15 VTGQETVSDIKAHVAGL-EGIDVEDQVLLL--AGVPLEDDATLGQCGVEELCTLEV   67 (74)
T ss_pred             ECCcCcHHHHHHHHHhh-hCCCHHHEEEEE--CCeECCCCCCHHHcCCCCCCEEEE
Confidence            57899999999999999 899999999999  899999999999999999999986

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.45  E-value=8.6e-14  Score=100.23  Aligned_cols=53  Identities=26%  Similarity=0.336  Sum_probs=50.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||+|||++|+++ +|+|+++|||++  +|++|+|+++|++||+++|+|||+
T Consensus        15 v~~~~TV~~lK~~I~~~-~gi~~~~q~Li~--~G~~L~D~~~l~~~~i~~~~tv~~   67 (70)
T cd01794          15 VSSKDTVGQLKKQLQAA-EGVDPCCQRWFF--SGKLLTDKTRLQETKIQKDYVVQV   67 (70)
T ss_pred             ECCcChHHHHHHHHHHH-hCCCHHHeEEEE--CCeECCCCCCHHHcCCCCCCEEEE
Confidence            47899999999999999 899999999999  999999999999999999999986

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.44  E-value=1.4e-13  Score=100.35  Aligned_cols=54  Identities=22%  Similarity=0.413  Sum_probs=48.6

Q ss_pred             CCcccHHHHHHHHHHHh-CCCC-cCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAK-SQLY-PDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~-~~i~-~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      +.++||.+||++|+++. ++++ +++|||+|  +||+|+|+++|++||+++|+|||+.
T Consensus        18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy--~GKiL~D~~TL~dygI~~gstlhLv   73 (75)
T cd01815          18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIH--CGRKLKDDQTLDFYGIQSGSTIHIL   73 (75)
T ss_pred             CccCcHHHHHHHHHHhhccCCCChHHeEEEe--CCcCCCCCCcHHHcCCCCCCEEEEE
Confidence            35789999999999984 3575 99999999  9999999999999999999999873

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.41  E-value=2.3e-13  Score=98.41  Aligned_cols=54  Identities=22%  Similarity=0.279  Sum_probs=51.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .|+++++|||++  +|++|+|+++|++||++++++|++-
T Consensus        17 v~~~~tV~~lK~~i~~~-~gi~~~~q~L~~--~G~~L~d~~~L~~~~i~~~~~l~l~   70 (74)
T cd01807          17 VSEKESVSTLKKLVSEH-LNVPEEQQRLLF--KGKALADDKRLSDYSIGPNAKLNLV   70 (74)
T ss_pred             ECCCCcHHHHHHHHHHH-HCCCHHHeEEEE--CCEECCCCCCHHHCCCCCCCEEEEE
Confidence            46899999999999999 899999999999  8999999999999999999999874

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.41  E-value=2.8e-13  Score=99.34  Aligned_cols=52  Identities=23%  Similarity=0.363  Sum_probs=49.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +++++||+|||++|+++ .|++++||||++  +|+.|+|+ +|++||+++|++|++
T Consensus        18 v~~~~TV~~LK~~I~~~-~~~~~~~qrL~~--~Gk~L~d~-~L~~~gi~~~~~i~l   69 (78)
T cd01804          18 VPPDETVEGLKKRISQR-LKVPKERLALLH--RETRLSSG-KLQDLGLGDGSKLTL   69 (78)
T ss_pred             ECCcCHHHHHHHHHHHH-hCCChHHEEEEE--CCcCCCCC-cHHHcCCCCCCEEEE
Confidence            47899999999999999 799999999999  89999999 999999999999986

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.40  E-value=3.1e-13  Score=97.82  Aligned_cols=53  Identities=26%  Similarity=0.439  Sum_probs=50.2

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++++|+++
T Consensus        15 v~~~~tV~~lK~~I~~~-~gi~~~~q~L~~--~G~~L~D~~tL~~~~i~~~~tl~l   67 (74)
T cd01810          15 VQLTQTVATLKQQVSQR-ERVQADQFWLSF--EGRPMEDEHPLGEYGLKPGCTVFM   67 (74)
T ss_pred             ECCcChHHHHHHHHHHH-hCCCHHHeEEEE--CCEECCCCCCHHHcCCCCCCEEEE
Confidence            47899999999999999 899999999999  899999999999999999999875

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.40  E-value=3.4e-13  Score=96.79  Aligned_cols=54  Identities=30%  Similarity=0.455  Sum_probs=50.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      +++++||.+||++|+++ .|+++++|||++  +|++|+|+++|++||+++|+||++.
T Consensus        16 v~~~~TV~~lK~~I~~~-~~i~~~~~~Li~--~Gk~L~d~~tL~~~~i~~~stl~l~   69 (71)
T cd01808          16 IAEDASVKDFKEAVSKK-FKANQEQLVLIF--AGKILKDTDTLTQHNIKDGLTVHLV   69 (71)
T ss_pred             ECCCChHHHHHHHHHHH-hCCCHHHEEEEE--CCeEcCCCCcHHHcCCCCCCEEEEE
Confidence            46889999999999999 799999999999  8999999999999999999999863

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.39  E-value=3.5e-13  Score=96.37  Aligned_cols=54  Identities=24%  Similarity=0.353  Sum_probs=51.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|+|||+-
T Consensus        15 v~~~~tV~~lK~~i~~~-~gi~~~~q~Li~--~G~~L~d~~~l~~~~i~~~stl~l~   68 (70)
T cd01798          15 VDPDTDIKQLKEVVAKR-QGVPPDQLRVIF--AGKELRNTTTIQECDLGQQSILHAV   68 (70)
T ss_pred             ECCCChHHHHHHHHHHH-HCCCHHHeEEEE--CCeECCCCCcHHHcCCCCCCEEEEE
Confidence            46899999999999999 899999999999  8999999999999999999999873

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.39  E-value=3.8e-13  Score=98.89  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=49.2

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +++++||+|||++|+++ .|++++||||.+..+|++|+|+++|++||+++|++|++
T Consensus        19 v~~~~TV~~lK~~I~~~-~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l   73 (80)
T cd01792          19 LRDSMTVSELKQQIAQK-IGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLL   73 (80)
T ss_pred             cCCCCcHHHHHHHHHHH-hCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEE
Confidence            47899999999999999 79999999993222899999999999999999999865

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.38  E-value=5e-13  Score=98.18  Aligned_cols=53  Identities=15%  Similarity=0.336  Sum_probs=50.2

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +++++||.+||++|+++ +|+++++|||++  +||.|+|+.+|++||+++|++|++
T Consensus        19 v~~~~TV~~lK~~i~~~-~gi~~~~QrLi~--~Gk~L~D~~tL~~y~i~~~~~i~l   71 (78)
T cd01797          19 LSRLTKVEELREKIQEL-FNVEPECQRLFY--RGKQMEDGHTLFDYNVGLNDIIQL   71 (78)
T ss_pred             cCCcCcHHHHHHHHHHH-hCCCHHHeEEEe--CCEECCCCCCHHHcCCCCCCEEEE
Confidence            36789999999999999 899999999999  899999999999999999999986

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.35  E-value=1e-12  Score=94.60  Aligned_cols=54  Identities=22%  Similarity=0.397  Sum_probs=50.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCc-hhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~-ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ +|+|+++|||++  +|+.|+|+ ++|++||+++|++|++.
T Consensus        16 v~~~~TV~~lK~~I~~~-~gip~~~q~Li~--~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796          16 VDPDLELENFKALCEAE-SGIPASQQQLIY--NGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             ECCcCCHHHHHHHHHHH-hCCCHHHeEEEE--CCeEccCCcccHHHcCCCCCCEEEEe
Confidence            47889999999999999 899999999999  89999887 68999999999999975

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.33  E-value=1.5e-12  Score=100.53  Aligned_cols=53  Identities=17%  Similarity=0.172  Sum_probs=50.6

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ +|+++++|||++  +|+.|+|+++|++||+++|+||++
T Consensus        44 V~~~~TV~~lK~kI~~~-~gip~~~QrLi~--~Gk~L~D~~tL~dy~I~~~stL~l   96 (103)
T cd01802          44 VSPFETVISVKAKIQRL-EGIPVAQQHLIW--NNMELEDEYCLNDYNISEGCTLKL   96 (103)
T ss_pred             eCCCCcHHHHHHHHHHH-hCCChHHEEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence            57899999999999999 899999999999  899999999999999999999986

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.32  E-value=2.1e-12  Score=93.59  Aligned_cols=54  Identities=26%  Similarity=0.443  Sum_probs=50.2

Q ss_pred             CCCcccHHHHHHHHHHHhCCC--CcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQL--YPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i--~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      +++++||.+||++|+++ .|+  ++++|||++  +|+.|+|+++|++||+++|++|++-
T Consensus        17 v~~~~TV~~lK~~i~~~-~~i~~~~~~q~L~~--~G~~L~d~~~L~~~~i~~~~~i~~~   72 (77)
T cd01805          17 VDPDDTVAELKEKIEEE-KGCDYPPEQQKLIY--SGKILKDDTTLEEYKIDEKDFVVVM   72 (77)
T ss_pred             ECCCCcHHHHHHHHHHh-hCCCCChhHeEEEE--CCEEccCCCCHHHcCCCCCCEEEEE
Confidence            46889999999999999 898  999999999  8999999999999999999998763

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.31  E-value=1.9e-12  Score=91.75  Aligned_cols=54  Identities=26%  Similarity=0.501  Sum_probs=50.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.+||++|+++ .++|+++|+|++  +|+.|+|+++|++||+++|++|++.
T Consensus        12 v~~~~tV~~lK~~i~~~-~~~~~~~~~L~~--~G~~L~d~~tL~~~~i~~~~~I~l~   65 (69)
T PF00240_consen   12 VDPDDTVADLKQKIAEE-TGIPPEQQRLIY--NGKELDDDKTLSDYGIKDGSTIHLV   65 (69)
T ss_dssp             EETTSBHHHHHHHHHHH-HTSTGGGEEEEE--TTEEESTTSBTGGGTTSTTEEEEEE
T ss_pred             ECCCCCHHHhhhhcccc-cccccccceeee--eeecccCcCcHHHcCCCCCCEEEEE
Confidence            46889999999999999 789999999999  9999999999999999999999863

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.31  E-value=2.5e-12  Score=91.53  Aligned_cols=54  Identities=28%  Similarity=0.433  Sum_probs=50.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      +++++||++||++|+++ .|+|+++|||.+  +|+.|+|+++|++||+++|++|++-
T Consensus        16 v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~--~g~~l~d~~~L~~~~i~~g~~l~v~   69 (71)
T cd01812          16 ISSQATFGDLKKMLAPV-TGVEPRDQKLIF--KGKERDDAETLDMSGVKDGSKVMLL   69 (71)
T ss_pred             ECCCCcHHHHHHHHHHh-hCCChHHeEEee--CCcccCccCcHHHcCCCCCCEEEEe
Confidence            46889999999999999 899999999999  8999999999999999999999863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.31  E-value=2.8e-12  Score=94.56  Aligned_cols=55  Identities=18%  Similarity=0.245  Sum_probs=48.9

Q ss_pred             CCCcccHHHHHHHHHHHhC-CCCcCceeEEEcCCCcccCCchhhhhcC--CCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKS-QLYPDRQAVRLEIKGKILKDSDDIKSLG--LKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~-~i~~~rQrL~~~~~Gk~L~d~ktL~~yg--v~~~~tl~vk   57 (233)
                      +++++||.|||++|++..+ ..++++|||+|  +||+|+|+++|++|+  +++|.|||+.
T Consensus        20 ~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy--~GKiLkD~~tL~~~~~~~~~~~tiHLV   77 (79)
T cd01790          20 CFLNWTVGELKTHLSRVYPSKPLEQDQRLIY--SGKLLPDHLKLRDVLRKQDEYHMVHLV   77 (79)
T ss_pred             cCCcChHHHHHHHHHHhcCCCCChhHeEEEE--cCeeccchhhHHHHhhcccCCceEEEE
Confidence            4789999999999999743 35589999999  999999999999997  9999999974

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.30  E-value=3.2e-12  Score=91.90  Aligned_cols=53  Identities=21%  Similarity=0.386  Sum_probs=50.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      ++++.||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        17 v~~~~tv~~lK~~i~~~-~g~~~~~qrL~~--~g~~L~d~~tl~~~~i~~g~~i~l   69 (76)
T cd01806          17 IEPTDKVERIKERVEEK-EGIPPQQQRLIY--SGKQMNDDKTAADYKLEGGSVLHL   69 (76)
T ss_pred             ECCCCCHHHHHHHHhHh-hCCChhhEEEEE--CCeEccCCCCHHHcCCCCCCEEEE
Confidence            46889999999999999 799999999999  899999999999999999999976

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01803 Ubiquitin Ubiquitin

Probab=99.30  E-value=2.9e-12  Score=92.15  Aligned_cols=53  Identities=21%  Similarity=0.419  Sum_probs=50.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +++++||++||++|+++ .|+|+++|||.+  +|+.|+|+++|++||+++|++|++
T Consensus        17 v~~~~tV~~lK~~i~~~-~g~~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~i~l   69 (76)
T cd01803          17 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL   69 (76)
T ss_pred             ECCcCcHHHHHHHHHHH-hCCCHHHeEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence            46889999999999999 899999999999  899999999999999999999876

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.29  E-value=3.2e-12  Score=93.09  Aligned_cols=58  Identities=24%  Similarity=0.431  Sum_probs=52.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      +++++||++||++|++. .|+|+++|+|++  +|+.|+|+++|++||+++|++|++  +-.|+
T Consensus        14 v~~~~TV~~lK~~i~~~-~gip~~~q~L~~--~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg   73 (76)
T cd01800          14 LQLSDPVSVLKVKIHEE-TGMPAGKQKLQY--EGIFIKDSNSLAYYNLANGTIIHLQLKERGG   73 (76)
T ss_pred             ECCCCcHHHHHHHHHHH-HCCCHHHEEEEE--CCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence            46889999999999998 899999999999  899999999999999999999875  44443

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>PTZ00044 ubiquitin; Provisional

Probab=99.29  E-value=3.2e-12  Score=92.41  Aligned_cols=53  Identities=13%  Similarity=0.225  Sum_probs=50.2

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +++++||++||++|+++ .|+|+++|||.+  +|+.|+|+++|++||+++|++|++
T Consensus        17 v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~--~g~~L~d~~~l~~~~i~~~~~i~l   69 (76)
T PTZ00044         17 FEPDNTVQQVKMALQEK-EGIDVKQIRLIY--SGKQMSDDLKLSDYKVVPGSTIHM   69 (76)
T ss_pred             ECCCCcHHHHHHHHHHH-HCCCHHHeEEEE--CCEEccCCCcHHHcCCCCCCEEEE
Confidence            46889999999999999 899999999999  899999999999999999999886

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.29  E-value=3.9e-12  Score=90.54  Aligned_cols=54  Identities=20%  Similarity=0.441  Sum_probs=50.6

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      +++++||.+||++|+++ .|+++++|||.+  +|+.|+|+++|++||+++|++|++.
T Consensus        17 v~~~~tv~~lK~~i~~~-~gi~~~~q~L~~--~g~~L~d~~~L~~~~i~~~~~l~l~   70 (72)
T cd01809          17 VEEEITVLDLKEKIAEE-VGIPVEQQRLIY--SGRVLKDDETLSEYKVEDGHTIHLV   70 (72)
T ss_pred             ECCCCcHHHHHHHHHHH-HCcCHHHeEEEE--CCEECCCcCcHHHCCCCCCCEEEEE
Confidence            46789999999999999 799999999999  8999999999999999999999874

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.22  E-value=1.2e-11  Score=89.93  Aligned_cols=56  Identities=27%  Similarity=0.336  Sum_probs=50.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEc-CCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-IKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~-~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||+|||++|+++ .++||+||+|++. .+|+.|+|+.+|++||+++|+.|++-
T Consensus        16 v~~~~Tv~~lK~~i~~~-tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm   72 (74)
T cd01813          16 TLSEDTVLDLKQFIKTL-TGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM   72 (74)
T ss_pred             ECCCCCHHHHHHHHHHH-HCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence            57899999999999999 8999999999963 27999999999999999999998763

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.22  E-value=1.3e-11  Score=90.14  Aligned_cols=53  Identities=30%  Similarity=0.446  Sum_probs=47.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC-CchhhhhcCCC-CCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDIKSLGLK-NGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~-d~ktL~~ygv~-~~~tl~vk   57 (233)
                      |++++||++||++|+++ +|+||++||| +  +|+.|. |+++|++||++ +|+++++-
T Consensus        19 v~~~~TV~~lK~kI~~~-~gip~~~QrL-~--~G~~L~dD~~tL~~ygi~~~g~~~~l~   73 (75)
T cd01799          19 VRPDMTVAQLKDKVFLD-YGFPPAVQRW-V--IGQRLARDQETLYSHGIRTNGDSAFLY   73 (75)
T ss_pred             ECCCCcHHHHHHHHHHH-HCcCHHHEEE-E--cCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence            47899999999999999 8999999999 8  798885 77899999998 88999873

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>KOG0005|consensus

Probab=99.18  E-value=1.3e-11  Score=85.62  Aligned_cols=53  Identities=21%  Similarity=0.367  Sum_probs=50.8

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      ++|+++|+.+|+.++++ +||||.+|||+|  .||++.|++|-++|++..||.+|+
T Consensus        17 Iep~DkverIKErvEEk-eGIPp~qqrli~--~gkqm~DD~tA~~Y~~~~GSVlHl   69 (70)
T KOG0005|consen   17 IEPTDKVERIKERVEEK-EGIPPQQQRLIY--AGKQMNDDKTAAHYNLLGGSVLHL   69 (70)
T ss_pred             eCcchHHHHHHHHhhhh-cCCCchhhhhhh--ccccccccccHHHhhhccceeEee
Confidence            47899999999999999 999999999999  899999999999999999999986

>KOG0004|consensus

Probab=99.16  E-value=1.2e-11  Score=100.93  Aligned_cols=53  Identities=19%  Similarity=0.419  Sum_probs=50.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||+++|++|+++ +|||++||||++  .|++|+|+.+|+||+++..+|+++
T Consensus        17 ve~~~ti~~~Kakiq~~-egIp~dqqrlif--ag~qLedgrtlSDY~Iqkestl~l   69 (156)
T KOG0004|consen   17 VEANDTIDNVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL   69 (156)
T ss_pred             ecccccHHHHHHhhhcc-cCCCchhhhhhh--hhcccccCCccccccccccceEEE
Confidence            46889999999999999 999999999999  899999999999999999999985

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.10  E-value=1.5e-10  Score=80.94  Aligned_cols=56  Identities=27%  Similarity=0.439  Sum_probs=51.6

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      +++++||.+||++|+++ .|+++++|+|.+  +|+.|+|+++|+++|+++|++|++.+.
T Consensus        14 ~~~~~ti~~lK~~i~~~-~~~~~~~~~l~~--~g~~l~d~~~l~~~~v~~~~~i~v~~~   69 (69)
T cd01769          14 VSPDDTVAELKAKIAAK-EGVPPEQQRLIY--AGKILKDDKTLSDYGIQDGSTLHLVLR   69 (69)
T ss_pred             ECCCChHHHHHHHHHHH-HCcChHHEEEEE--CCcCCCCcCCHHHCCCCCCCEEEEEEC
Confidence            35789999999999999 789999999999  899999999999999999999998763

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>KOG0003|consensus

Probab=99.09  E-value=9.3e-12  Score=95.77  Aligned_cols=60  Identities=22%  Similarity=0.383  Sum_probs=54.6

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEE--EecCCCcc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVF--IKDLGPQI   63 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~--vkdlg~qi   63 (233)
                      |+|++||++||++|+++ +|+||++|||++  +|++|+|+.|+++||++..+|++  .+-+|+-+
T Consensus        17 ~EpS~ti~~vKA~i~~~-~Gi~~~~~~L~~--~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~i   78 (128)
T KOG0003|consen   17 VEPSDTIDNVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLRGGII   78 (128)
T ss_pred             ecccchHHHHHHHhccc-cCCCHHHHHHHh--cccccccCCcccccCccchhhhhhhHHHhcCCC
Confidence            57999999999999999 999999999999  89999999999999999999876  47777743

>smart00213 UBQ Ubiquitin homologues

Probab=99.09  E-value=1.1e-10  Score=80.63  Aligned_cols=49  Identities=24%  Similarity=0.451  Sum_probs=45.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGD   52 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~   52 (233)
                      |++++||++||++|+++ .|+++++|||.+  +|+.|+|+++|++||+++|+
T Consensus        16 v~~~~tv~~lk~~i~~~-~~~~~~~~~L~~--~g~~L~d~~tL~~~~i~~~~   64 (64)
T smart00213       16 VKPSDTVSELKEKIAEL-TGIPVEQQRLIY--KGKVLEDDRTLADYNIQDGS   64 (64)
T ss_pred             ECCCCcHHHHHHHHHHH-HCCCHHHEEEEE--CCEECCCCCCHHHcCCcCCC
Confidence            46889999999999999 799999999999  89999999999999999885

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.07  E-value=1.3e-10  Score=90.63  Aligned_cols=57  Identities=16%  Similarity=0.034  Sum_probs=48.4

Q ss_pred             CCCcccHHHHHHHHHHHh----CCCC--cCceeEEEcCCCcccCCchhhhhcC------CCCCceEEEecC
Q psy9586           1 VSGSFTVKDIKKEVHKAK----SQLY--PDRQAVRLEIKGKILKDSDDIKSLG------LKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~----~~i~--~~rQrL~~~~~Gk~L~d~ktL~~yg------v~~~~tl~vkdl   59 (233)
                      +++++||++||++|++..    +++|  +++|||+|  .||+|+|++||++|+      ++..+|+|+.--
T Consensus        22 ~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIy--sGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvlr   90 (113)
T cd01814          22 YPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLIS--AGKILENSKTVGECRSPVGDIAGGVITMHVVVQ   90 (113)
T ss_pred             cChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEe--CCeecCCCCcHHHhCCcccccCCCceEEEEEec
Confidence            468999999999999542    3455  99999999  999999999999999      778899987433

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=98.97  E-value=9.3e-10  Score=83.93  Aligned_cols=58  Identities=29%  Similarity=0.472  Sum_probs=51.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC-CchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~-d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      |++++||.+||.+|..+ -+++|++|+|.+  +|+.|. |++||++||+.+|+.|+++-=-|
T Consensus        21 V~~~~TVg~LK~lImQ~-f~V~P~dQkL~~--dG~~L~DDsrTLssyGv~sgSvl~LlideP   79 (107)
T cd01795          21 VSANQTLKELKIQIMHA-FSVAPFDQNLSI--DGKILSDDCATLGTLGVIPESVILLKADEP   79 (107)
T ss_pred             eCccccHHHHHHHHHHH-hcCCcccceeee--cCceeccCCccHHhcCCCCCCEEEEEecCC
Confidence            57899999999999999 699999999999  599995 57899999999999999875444

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=98.96  E-value=1.1e-09  Score=81.81  Aligned_cols=53  Identities=17%  Similarity=0.332  Sum_probs=50.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |.+++|+++||++++++ .|+++++|||+|  +|+.|+|++|+++||+++|++|++
T Consensus        28 v~~~~~l~~l~~~y~~~-~gi~~~~~rf~f--~G~~L~~~~T~~~l~m~d~d~I~v   80 (87)
T cd01763          28 IKRSTPLKKLMEAYCQR-QGLSMNSVRFLF--DGQRIRDNQTPDDLGMEDGDEIEV   80 (87)
T ss_pred             EcCCCHHHHHHHHHHHH-hCCCccceEEEE--CCeECCCCCCHHHcCCCCCCEEEE
Confidence            46889999999999999 899999999999  899999999999999999999976

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=98.95  E-value=1.4e-09  Score=80.85  Aligned_cols=60  Identities=17%  Similarity=0.235  Sum_probs=51.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEE-EcCCCc---cc-CCchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVR-LEIKGK---IL-KDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~-~~~~Gk---~L-~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      ++++.||.+||++++.. .|++|+.|||. ++.+|.   .| +|+++|++||+++|.+||+.|..|
T Consensus        19 ~~~~~Tv~~lK~kl~~~-~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~~p   83 (84)
T cd01789          19 YSRGLTIAELKKKLELV-VGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDVSG   83 (84)
T ss_pred             cCCCCcHHHHHHHHHHH-HCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeCCC
Confidence            46889999999999998 79999999996 543331   35 677899999999999999999876

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>KOG0010|consensus

Probab=98.90  E-value=1.5e-09  Score=102.71  Aligned_cols=53  Identities=28%  Similarity=0.500  Sum_probs=50.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |+.++||+++|++|+.. -+.+++||+|+|  .||+|||++||..|||+||.|||+
T Consensus        31 V~~~ssV~qlKE~I~~~-f~a~~dqlvLIf--aGrILKD~dTL~~~gI~Dg~TvHL   83 (493)
T KOG0010|consen   31 VASDSSVLQLKELIAQR-FGAPPDQLVLIY--AGRILKDDDTLKQYGIQDGHTVHL   83 (493)
T ss_pred             cccchHHHHHHHHHHHh-cCCChhHeeeee--cCccccChhhHHHcCCCCCcEEEE
Confidence            56789999999999999 589999999999  899999999999999999999997

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=98.85  E-value=3.1e-09  Score=99.11  Aligned_cols=54  Identities=24%  Similarity=0.391  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhCC---CCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQ---LYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~---i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.+||++|+++ .|   +++++|||+|  +||+|+|+++|++|||+++++|++-
T Consensus        17 V~~~~TV~dLK~kI~~~-~g~~~ip~~~QkLIy--~GkiL~Dd~tL~dy~I~e~~~Ivvm   73 (378)
T TIGR00601        17 MEPDETVKELKEKIEAE-QGKDAYPVAQQKLIY--SGKILSDDKTVREYKIKEKDFVVVM   73 (378)
T ss_pred             eCCcChHHHHHHHHHHh-hCCCCCChhHeEEEE--CCEECCCCCcHHHcCCCCCCEEEEE
Confidence            57889999999999998 67   9999999999  8999999999999999999998764

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.84  E-value=2.8e-09  Score=79.39  Aligned_cols=60  Identities=25%  Similarity=0.450  Sum_probs=47.1

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEc--CCCc---cc-CCchhhhhcCCCCCceEEEecCCCc
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLE--IKGK---IL-KDSDDIKSLGLKNGDMVFIKDLGPQ   62 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~--~~Gk---~L-~d~ktL~~ygv~~~~tl~vkdlg~q   62 (233)
                      +++.||.|||++++.. .|++|+.|||.+.  .++.   .+ +|+++|.+||+++|.+|++.|..|+
T Consensus        21 ~~~~Tv~eLK~kl~~~-~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D~~p~   86 (87)
T PF14560_consen   21 PKSITVSELKQKLEKL-TGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVDTNPS   86 (87)
T ss_dssp             ETTSBHHHHHHHHHHH-HTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE-T--
T ss_pred             CCCCCHHHHHHHHHHH-hCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEeCCCC
Confidence            5789999999999999 7999999999875  3333   23 4678999999999999999999885

>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long

Probab=98.70  E-value=7.5e-08  Score=84.35  Aligned_cols=70  Identities=19%  Similarity=0.257  Sum_probs=54.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhchhhhHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHH
Q psy9586          99 PYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFG  178 (233)
Q Consensus        99 ~~~~~~~l~~~~~~~Hy~kR~~et~~p~~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil  178 (233)
                      +......++.+++.               +|......+|.++.+-|++.++..++-+      .|+|+|+.+||||+|++
T Consensus       116 ~~~~~~~~g~~l~~---------------~g~~~E~~AD~Q~~~fk~~~~n~g~~~~------~GLw~~sRHPNYfGE~l  174 (235)
T PF06966_consen  116 PLNWLDILGIALFL---------------IGFLLETVADQQKYRFKKDPANKGKFCT------TGLWRYSRHPNYFGEIL  174 (235)
T ss_pred             cchHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHhhCcccCCcccc------CCeeeeeeCchHHHHHH
Confidence            34444566666664               7888889999999999877553323444      79999999999999999


Q ss_pred             HHHHHHHhhcc
Q psy9586         179 SWLSFSLLTSC  189 (233)
Q Consensus       179 ~w~~f~l~~~~  189 (233)
                      .|.|+++++.+
T Consensus       175 ~W~g~~~~a~~  185 (235)
T PF06966_consen  175 FWWGIYLAAIS  185 (235)
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=98.38  E-value=3.5e-07  Score=65.19  Aligned_cols=54  Identities=22%  Similarity=0.375  Sum_probs=47.9

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCc-CceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYP-DRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~-~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |.+++|+..|++.++++ .++++ +.++|.|  +|+.|++++|++++|+++|++|.+.
T Consensus        17 v~~~~~~~~l~~~~~~~-~~i~~~~~~~l~f--dG~~L~~~~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen   17 VKPTTTVSKLIEKYCEK-KGIPPEESIRLIF--DGKRLDPNDTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EETTSCCHHHHHHHHHH-HTTTT-TTEEEEE--TTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred             ECCCCcHHHHHHHHHHh-hCCCccceEEEEE--CCEEcCCCCCHHHCCCCCCCEEEEE
Confidence            35789999999999999 79999 9999999  8999999999999999999999864

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]

Probab=98.23  E-value=3.7e-06  Score=73.99  Aligned_cols=100  Identities=17%  Similarity=0.184  Sum_probs=66.2

Q ss_pred             ccchhhhhhHHhhhhHHHHHHHHhccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhchhhhHhhhhHHHHHHHH
Q psy9586          62 QIGWSTVFMAEYAGPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIVHYTKRVLETLTPSVFCQLGNLSIHLALR  141 (233)
Q Consensus        62 qi~w~~vf~~Ey~gpl~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~Hy~kR~~et~~p~~~~~~~n~~~h~~L~  141 (233)
                      -.+.+.||.++++--.++-+-.|.  ...-+.    .+....+.++.++|.               +|...-...|.+|-
T Consensus       114 ~~~l~~vf~lQ~ll~~ilalpi~~--a~~~~~----~~~~~~d~~g~~iwi---------------vg~~fE~lgD~QL~  172 (272)
T COG3752         114 LKALFIVFGLQALLLFILALPIYL--AALNGP----REFGWWDVIGLAIWI---------------VGIVFEALGDAQLW  172 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HhcCCC----CCCcHHHHHHHHHHH---------------HHHHHHHhhHHHHH
Confidence            446677788876553333221121  000111    234455667777775               55555567899999


Q ss_pred             hcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhc
Q psy9586         142 DLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS  188 (233)
Q Consensus       142 ~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~  188 (233)
                      ..|++.....++-.      .|++++...||||+|.+.|.||.+++-
T Consensus       173 ~Fk~~P~nkgkll~------~GLWr~tRHPNYFgE~l~Wwg~~Lia~  213 (272)
T COG3752         173 VFKKDPRNKGKLLD------TGLWRWTRHPNYFGEALVWWGFYLIAI  213 (272)
T ss_pred             HHHhChhhcccccc------ccceecccCcchHHHHHHHHHHHHHHH
Confidence            99987654445544      599999999999999999999999864

>KOG0011|consensus

Probab=98.22  E-value=1.2e-06  Score=79.49  Aligned_cols=53  Identities=25%  Similarity=0.387  Sum_probs=48.9

Q ss_pred             CCCcccHHHHHHHHHHHhCC--CCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQ--LYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~--i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +.|+.||.++|++|+.. .|  +|+++|.|++  +||+|+|+.++.+|+++++.-|.+
T Consensus        17 v~Pe~tV~evK~kIet~-~g~dyP~~~QkLIy--~GkiL~D~~tv~Eykv~E~~fiVv   71 (340)
T KOG0011|consen   17 VKPEDTVVEVKKKIETE-KGPDYPAEQQKLIY--SGKILKDETTVGEYKVKEKKFIVV   71 (340)
T ss_pred             cCcchhHHHHHHHHHhc-cCCCCchhhheeee--cceeccCCcchhhhccccCceEEE
Confidence            46899999999999998 66  9999999999  999999999999999999987765

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.21  E-value=1.4e-06  Score=68.11  Aligned_cols=46  Identities=22%  Similarity=0.314  Sum_probs=41.5

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKN   50 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~   50 (233)
                      .+++||.|||+.|+.. -+-||+.|||..  ++.+|+|++||+|+|+.+
T Consensus        19 kes~tVlelK~~iegI-~k~pp~dQrL~k--d~qvLeD~kTL~d~g~t~   64 (119)
T cd01788          19 KESTTVYELKRIVEGI-LKRPPEDQRLYK--DDQLLDDGKTLGDCGFTS   64 (119)
T ss_pred             CCcccHHHHHHHHHHH-hcCChhHheeec--CceeecccccHHHcCccc
Confidence            5789999999999998 789999999983  778999999999999944

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>KOG0001|consensus

Probab=98.18  E-value=4.1e-06  Score=57.78  Aligned_cols=53  Identities=21%  Similarity=0.340  Sum_probs=48.7

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      .+..+|+.+|++|+.+ +++++++|++.+  .|+.|+|+.++.+|++..++++++.
T Consensus        17 ~~~~~i~~~k~~i~~~-~~~~~~~q~~~~--~~~~l~d~~~l~~~~i~~~~~~~l~   69 (75)
T KOG0001|consen   17 SPSDTIEVVKAKIRDK-EGIPVDQQRLIF--GGKPLEDGRTLADYNIQEGSTLHLV   69 (75)
T ss_pred             cCCCHHHHHHHHHHhh-cCCCCeeEEEEE--CCEECcCCCcHHHhCCCCCCEEEEE
Confidence            4678999999999999 899999999988  8899999999999999999999864

>KOG4248|consensus

Probab=98.07  E-value=3.7e-06  Score=85.61  Aligned_cols=60  Identities=15%  Similarity=0.470  Sum_probs=54.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCCccc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQIG   64 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~qi~   64 (233)
                      |+..+||+++|+.|.++ -.|+.+.||||+  .|++|.|+|++++||| ||-+||+.|-.|.=.
T Consensus        19 ig~q~ti~~~~d~~r~~-~ni~s~~qr~i~--~grvl~~~k~vq~~~v-dgk~~hlverppp~~   78 (1143)
T KOG4248|consen   19 IGAQMTIKEFKDHIRAS-VNIPSEKQRLIY--QGRVLQDDKKVQEYNV-DGKVIHLVERPPPQT   78 (1143)
T ss_pred             echHHHHHHHHHHHHHh-cccccccceeee--cceeeccchhhhhccC-CCeEEEeeccCCCCc
Confidence            35678999999999999 799999999999  9999999999999999 999999999876443

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.01  E-value=1.5e-05  Score=51.88  Aligned_cols=54  Identities=33%  Similarity=0.530  Sum_probs=48.4

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD   58 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd   58 (233)
                      ++++|+.+||+++.++ .|.++++|+|.+  +|..++++..+.++++.+++++++..
T Consensus        15 ~~~~tv~~l~~~i~~~-~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196          15 PSGTTVADLKEKLAKK-LGLPPEQQRLLV--NGKILPDSLTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             CCCCcHHHHHHHHHHH-HCcChHHeEEEE--CCeECCCCCcHHHcCCCCCCEEEEEe
Confidence            4689999999999999 579999999998  89999988888999999999998764

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2

Probab=97.86  E-value=0.00019  Score=54.48  Aligned_cols=94  Identities=15%  Similarity=0.112  Sum_probs=61.3

Q ss_pred             hhHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q psy9586         127 VFCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQMTVW  206 (233)
Q Consensus       127 ~~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m~~~  206 (233)
                      ++|......+...++.-+....... ...+...-.+|.|++|..|-|++.++.++|.+++++++..++.++.....+...
T Consensus        11 ~~g~~l~~~~~~~l~~~~~~~~~~~-~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~~~~~~~~~   89 (106)
T PF04191_consen   11 LAGIALAIWAFKALGRFGTYYGDFF-GREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVLAFLLYYIF   89 (106)
T ss_pred             HHHHHHHHHHHHHHHhcCeecCCcc-cccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            3455555666666655543311110 011112334799999999999999999999999999888765554444444444


Q ss_pred             HH-HHhHHHHhhCCC-C
Q psy9586         207 AL-GKHKNYKKEFPD-Y  221 (233)
Q Consensus       207 A~-~~h~wY~~~F~~-y  221 (233)
                      +. .-.++.+++|+| |
T Consensus        90 ~~~~EE~~L~~~fG~~Y  106 (106)
T PF04191_consen   90 IIRFEERFLERRFGEEY  106 (106)
T ss_pred             HHHhHHHHHHHHhCcCC
Confidence            44 667888899986 5

1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=97.84  E-value=9.1e-06  Score=60.02  Aligned_cols=57  Identities=33%  Similarity=0.521  Sum_probs=34.2

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCC-ccc--CCchhhhhcCCCCCceEEEec
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG-KIL--KDSDDIKSLGLKNGDMVFIKD   58 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~G-k~L--~d~ktL~~ygv~~~~tl~vkd   58 (233)
                      +++++|+.+||++|+++ -+++.+.|.|..+.++ +.+  .++++|+++|++.|+-||++.
T Consensus        20 ~~~~~t~~~L~~kI~~~-l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~~   79 (80)
T PF11543_consen   20 VSPSSTLSDLKEKISEQ-LSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLKP   79 (80)
T ss_dssp             E-TTSBHHHHHHHHHHH-S---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE---
T ss_pred             cCCcccHHHHHHHHHHH-cCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEec
Confidence            46899999999999999 6899999988765444 345  467899999999999999874

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis

Probab=97.75  E-value=0.00016  Score=68.80  Aligned_cols=107  Identities=13%  Similarity=0.115  Sum_probs=77.7

Q ss_pred             hhHhhhhHHHHHHHHhcCCCCCccc-----ccc--cCCCCCCCCccceecccchhhHHHHHHHHHHhhc--chhHHHHHH
Q psy9586         127 VFCQLGNLSIHLALRDLRPPGTNVR-----RIP--VATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS--CFPALLFAS  197 (233)
Q Consensus       127 ~~~~~~n~~~h~~L~~LR~~~~~~~-----~ip--~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~--~~~~~~f~~  197 (233)
                      ++|-..+-.++.+-.+-|++++...     .++  +|.+.=-.||..++..|||++|+++-+++++.++  +...+...+
T Consensus       312 ~~gy~i~r~sn~QK~~FR~~p~~p~~~~~~~~~t~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf~~~~pyfy~~  391 (432)
T PF01222_consen  312 LVGYYIFRGSNSQKNRFRRNPKDPKVIHLKYIPTKRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGFSSILPYFYPI  391 (432)
T ss_pred             HHHHHHHHHhchhHHHhcCCCCCCcccccceeecCCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence            4677777778888888886543211     122  2222333599999999999999999999999876  556666666


Q ss_pred             HHHHHHHHHHHHHhHHHHhhCCC----CCC-CceeeecccC
Q psy9586         198 AGMYQMTVWALGKHKNYKKEFPD----YPK-QRKAIVPFVI  233 (233)
Q Consensus       198 ~~~~~m~~~A~~~h~wY~~~F~~----yp~-~RkaiIPfi~  233 (233)
                      +.+.-+.-||..-++.=++|.++    |-+ =+..+||+|+
T Consensus       392 ~~~~lL~hR~~RD~~rC~~KYG~~W~~Yc~~Vpy~~iP~iy  432 (432)
T PF01222_consen  392 FFTILLIHRARRDEERCRKKYGKDWDEYCKRVPYRIIPGIY  432 (432)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhCHHHHHHHHhCCEEEeCCcC
Confidence            67778888999887776777753    653 5689999986

They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=97.59  E-value=0.00013  Score=57.21  Aligned_cols=49  Identities=24%  Similarity=0.375  Sum_probs=36.9

Q ss_pred             CCcccHHHHHHHHHHHhC------CCCcCceeEEEcCCCcccCCchhhhhcCCCCCc
Q psy9586           2 SGSFTVKDIKKEVHKAKS------QLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGD   52 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~------~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~   52 (233)
                      ++++||.+||+.|-..-+      -..++..||++  .||.|+|+++|+++++..|.
T Consensus        21 ~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~--~GriL~d~~tL~~~~~~~~~   75 (111)
T PF13881_consen   21 DPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIY--AGRILEDNKTLSDCRLPSGE   75 (111)
T ss_dssp             -TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEE--TTEEE-SSSBTGGGT--TTS
T ss_pred             CccChHHHHHHHHHHHCccccccCCCChhhEEEEe--CCeecCCcCcHHHhCCCCCC
Confidence            578999999999986521      12467889999  99999999999999987655

>KOG4495|consensus

Probab=97.45  E-value=9.2e-05  Score=56.29  Aligned_cols=49  Identities=16%  Similarity=0.181  Sum_probs=41.1

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNG   51 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~   51 (233)
                      +++.||.|||.+++.. .+=|++.|||..-+....|+|+++|.|+|..+.
T Consensus        19 ~es~tV~elK~~l~gi-~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gfts~   67 (110)
T KOG4495|consen   19 KESSTVFELKRKLEGI-LKRPVNEQRLYKMDTEQLLDDGKTLGDCGFTSQ   67 (110)
T ss_pred             CccccHHHHHHHHHHH-HhCCCcchheeecCHHHHhhccchhhhcccccc
Confidence            5789999999999998 677999999986445578899999999976543

>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.00042  Score=58.74  Aligned_cols=71  Identities=23%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             CCccceecccchhhHHHHHHHHHHhhcchhHHHHHHHHHHHH-HHHHHHHhHHHHhhCCC----CCCCceeeeccc
Q psy9586         162 TSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLFASAGMYQM-TVWALGKHKNYKKEFPD----YPKQRKAIVPFV  232 (233)
Q Consensus       162 gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f~~~~~~~m-~~~A~~~h~wY~~~F~~----yp~~RkaiIPfi  232 (233)
                      +|.|++|..|-|++-++.++|..+...|+.+++.+......+ ..++..-.+..+++|+|    |.++-+..||.+
T Consensus       110 tG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~~l~~~~~~~~~~~~~~i~~EEr~L~~~fg~~Y~~Y~~rV~r~iP~~  185 (187)
T COG2020         110 TGPYSIVRHPIYLGLLLFALGTGLLLGSLWALLIFVVLVALLFLFRIREEERYLRAEFGDEYREYRKRVPRLIPPL  185 (187)
T ss_pred             cCCcceecCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhCCccCCCC
Confidence            799999999999999999999999888888776665555555 67788888888899976    677778888875

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=96.99  E-value=0.0021  Score=46.83  Aligned_cols=56  Identities=13%  Similarity=0.305  Sum_probs=44.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-CC--cccCCchhhhhcCCCCCceEEEec
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KG--KILKDSDDIKSLGLKNGDMVFIKD   58 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-~G--k~L~d~ktL~~ygv~~~~tl~vkd   58 (233)
                      |+|..+|..+|++|.+. -++ +.+|||.+.+ +|  ..|.+.++|++||+=.+..|.+.+
T Consensus        17 vnPy~pI~k~K~kI~~~-~~~-~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle   75 (80)
T cd01811          17 VNPYSPIRKIKEKIRRS-RNC-SGLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE   75 (80)
T ss_pred             eCCcchHHHHHHHHHHh-hCc-ccceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence            57889999999999987 555 4599999864 33  345888999999998877776644

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>KOG1872|consensus

Probab=96.88  E-value=0.0014  Score=62.42  Aligned_cols=53  Identities=26%  Similarity=0.379  Sum_probs=48.8

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      ++.++|+.++|+++... .|.+|+||++..  +|+.++|+-.+...++++|.|+++
T Consensus        20 l~~d~t~~vlKaqlf~L-TgV~PeRQKv~v--KGg~a~dd~~~~al~iKpn~~lmM   72 (473)
T KOG1872|consen   20 LSTDETPSVLKAQLFAL-TGVPPERQKVMV--KGGLAKDDVDWGALQIKPNETLMM   72 (473)
T ss_pred             ccCCCchHHHHHHHHHh-cCCCccceeEEE--ecccccccccccccccCCCCEEEe
Confidence            35788999999999999 999999999988  899999987888999999999987

>KOG3493|consensus

Probab=96.44  E-value=0.00071  Score=47.92  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=44.2

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      .+++||.|+|+.|+.+ .|-.+++..|.-  -+..++|.-+|++|.+.+|..+.+
T Consensus        19 n~dDtiGD~KKliaaQ-tGT~~~kivl~k--~~~i~kd~I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen   19 NTDDTIGDLKKLIAAQ-TGTRPEKIVLKK--WYTIFKDHITLSDYEIHDGMNLEL   70 (73)
T ss_pred             CCcccccCHHHHHHHh-hCCChhHhHHHh--hhhhhhcccceeeEEeccCccEEE
Confidence            5789999999999999 899998887752  466779999999999999976643

>KOG0006|consensus

Probab=96.35  E-value=0.0028  Score=57.84  Aligned_cols=58  Identities=22%  Similarity=0.293  Sum_probs=50.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      |+.++.|.+||+.++++ .|+|+++-|++|  .||-|.|+.+++.+.+...+.+|+--+-|
T Consensus        20 v~~~t~I~~lke~Vak~-~gvp~D~L~viF--aGKeLs~~ttv~~cDL~qqs~~hi~~lRP   77 (446)
T KOG0006|consen   20 VDSDTSIFQLKEVVAKR-QGVPADQLRVIF--AGKELSNDTTVQNCDLSQQSATHIMLLRP   77 (446)
T ss_pred             EecCCCHHHHHHHHHHh-hCCChhheEEEE--eccccccCceeecccccccchhhhhccCc
Confidence            46788999999999999 899999999999  89999999999977777777777655544

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=96.22  E-value=0.0035  Score=45.72  Aligned_cols=55  Identities=16%  Similarity=0.311  Sum_probs=37.2

Q ss_pred             CCcccHHHHHHHHHHHhCCCCc---Cce-eEEEc-CCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYP---DRQ-AVRLE-IKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~---~rQ-rL~~~-~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      +.+.+|++|...+.+. -+.+.   ..+ .+.+. .+|..|+++++|+++||.||+.+++.
T Consensus        20 P~~vpv~~li~~l~~~-~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L~   79 (79)
T PF08817_consen   20 PADVPVAELIPELVEL-LGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVLR   79 (79)
T ss_dssp             ETTSBTTHHHHHHHHH-S---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE-
T ss_pred             CCCCcHHHHHHHHHHH-hCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEeC
Confidence            4677899999988886 34432   322 35565 68999999999999999999999863

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG1435|consensus

Probab=96.16  E-value=0.0087  Score=56.55  Aligned_cols=106  Identities=13%  Similarity=0.150  Sum_probs=68.3

Q ss_pred             hhHhhhhHHHHHHHHhcCCCCCcc--------cccccCCCCCCCCccceecccchhhHHHHHHHHHHhhc--chhHHHHH
Q psy9586         127 VFCQLGNLSIHLALRDLRPPGTNV--------RRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS--CFPALLFA  196 (233)
Q Consensus       127 ~~~~~~n~~~h~~L~~LR~~~~~~--------~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~--~~~~~~f~  196 (233)
                      +.|...+-.|+.+-..-|+..++.        +. -+|.+.=-.||..++..|||++|+++=++|++.++  +..+..+.
T Consensus       308 l~gyyifr~an~QK~~FRkn~~~~~~~~i~~i~t-~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~gf~s~lpyfy~  386 (428)
T KOG1435|consen  308 LLGYYIFRGANAQKNEFRKNPGDPKLKNIKTIYT-STGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCGFNSPLPYFYP  386 (428)
T ss_pred             HhheeEeeccchhHHHHhcCCCCCccccccceEe-ccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhccCCCCcchHHH
Confidence            334444556777777777753211        00 01222333699999999999999999999999876  55555556


Q ss_pred             HHHHHHHHHHHHHHh----HHHHhhCCCC-CCCceeeecccC
Q psy9586         197 SAGMYQMTVWALGKH----KNYKKEFPDY-PKQRKAIVPFVI  233 (233)
Q Consensus       197 ~~~~~~m~~~A~~~h----~wY~~~F~~y-p~~RkaiIPfi~  233 (233)
                      ++.+.-+.-||..-.    ..|.+-+++| ++-+..+||+|+
T Consensus       387 iyf~~LLvhR~~RDe~rC~~KYG~~W~~Yc~~VpyriiP~Vy  428 (428)
T KOG1435|consen  387 IYFTLLLVHRAARDEHRCRSKYGEDWEEYCRKVPYRILPYVY  428 (428)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhhHHHHHhhCCcccCCCCC
Confidence            566666666765543    2344444455 456789999986

>KOG4650|consensus

Probab=96.06  E-value=0.014  Score=51.73  Aligned_cols=29  Identities=24%  Similarity=0.384  Sum_probs=26.3

Q ss_pred             CCCCccceecccchhhHHHHHHHHHHhhc
Q psy9586         160 PFTSLFDYVSCPNYTYEFGSWLSFSLLTS  188 (233)
Q Consensus       160 P~gglF~~VscPnY~~Eil~w~~f~l~~~  188 (233)
                      ...|+|+|...|||++|-+.|.|+.+.+.
T Consensus       216 ~d~GlwrySRHPNylgEqL~Wwglyvfa~  244 (311)
T KOG4650|consen  216 CDVGLWRYSRHPNYLGEQLLWWGLYVFAA  244 (311)
T ss_pred             ccccceeeccCccHHHHHHHHHHHHHHHh
Confidence            44699999999999999999999999865

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.01  E-value=0.011  Score=45.30  Aligned_cols=40  Identities=20%  Similarity=0.286  Sum_probs=32.6

Q ss_pred             CcccHHHHHHHHHHHh-CCCCcCceeEEEcCCCcccCCchhhh
Q psy9586           3 GSFTVKDIKKEVHKAK-SQLYPDRQAVRLEIKGKILKDSDDIK   44 (233)
Q Consensus         3 ~~~TV~~LK~~i~~~~-~~i~~~rQrL~~~~~Gk~L~d~ktL~   44 (233)
                      .++||.+||++|-++. +...-.|+||++  +|+.|.|+..|.
T Consensus        22 ~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~--~Gr~L~d~t~l~   62 (97)
T PF10302_consen   22 NTTTVAWLKQLIRERLPPEPSRRRLRLIY--AGRLLNDHTDLS   62 (97)
T ss_pred             CcccHHHHHHHHHhhcCCCCccccEEeee--cCcccCccchhh
Confidence            6789999999999985 345557788888  999999887664

They contain a characteristic GFDRL sequence motif.

>KOG3206|consensus

Probab=95.16  E-value=0.042  Score=47.48  Aligned_cols=62  Identities=18%  Similarity=0.188  Sum_probs=51.4

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEc----CCCcccC-CchhhhhcCCCCCceEEEecCCCccc
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLE----IKGKILK-DSDDIKSLGLKNGDMVFIKDLGPQIG   64 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~----~~Gk~L~-d~ktL~~ygv~~~~tl~vkdlg~qi~   64 (233)
                      +++.||+++|.+++.. .|-+++..+|-+-    ..+-.|+ +++.|..|++.||--||+.|..+|-.
T Consensus        20 ~~~ltl~q~K~KLe~~-~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~   86 (234)
T KOG3206|consen   20 SNSLTLAQFKDKLELL-TGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSI   86 (234)
T ss_pred             CCcCcHHHHHhhhhhh-hCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccc
Confidence            5788999999999998 8999999998752    2334565 46689999999999999999998744

>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2

Probab=94.53  E-value=0.23  Score=37.49  Aligned_cols=50  Identities=20%  Similarity=0.147  Sum_probs=31.2

Q ss_pred             CCccceecccchhhHHHHHHHHHHhhcch--hHHHHHHHHHHHHHHHHHHHh
Q psy9586         162 TSLFDYVSCPNYTYEFGSWLSFSLLTSCF--PALLFASAGMYQMTVWALGKH  211 (233)
Q Consensus       162 gglF~~VscPnY~~Eil~w~~f~l~~~~~--~~~~f~~~~~~~m~~~A~~~h  211 (233)
                      .|.|++|..|+|++-++..++...+..+.  .++++.......+..|...-.
T Consensus        38 ~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~l~~RI~~EE   89 (94)
T PF04140_consen   38 SGPYRYVRHPSYLGNIIWELGGQLLLFNAWLTALILFALVAWLLFVRIREEE   89 (94)
T ss_dssp             SSTTTTBSSHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999877777776665544  344443333334445554433

1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.

>KOG0013|consensus

Probab=94.52  E-value=0.054  Score=46.92  Aligned_cols=49  Identities=24%  Similarity=0.360  Sum_probs=44.5

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCce
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDM   53 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~t   53 (233)
                      +.-+|+.++|.+++.+ ++.++--||+.+  +|+.|.|...|+++++.+|.-
T Consensus       164 ~~~Dtv~eik~~L~Aa-eg~D~~sQrif~--Sg~~l~dkt~LeEc~iekg~r  212 (231)
T KOG0013|consen  164 PHYDTVGEIKRALRAA-EGVDPLSQRIFF--SGGVLVDKTDLEECKIEKGQR  212 (231)
T ss_pred             cCcCcHHHHHHHHHHh-hccchhhheeec--cCCceeccccceeeeecCCCE
Confidence            3567999999999999 999999999998  999999999999999999954

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=93.62  E-value=0.17  Score=36.89  Aligned_cols=54  Identities=22%  Similarity=0.399  Sum_probs=40.6

Q ss_pred             CCCcccHHHHHHHHHHHhCC-CCcCceeEEEcCCCcccCCchhhhhc-CCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQ-LYPDRQAVRLEIKGKILKDSDDIKSL-GLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~-i~~~rQrL~~~~~Gk~L~d~ktL~~y-gv~~~~tl~vk   57 (233)
                      |+++++|.|+++.+... +. -.-..-.|.+  +|+.|+|...|++. |+++|+++.++
T Consensus         1 v~~~d~v~dvrq~L~~~-~~t~~~Tn~~L~~--~g~~L~~~~el~~i~~~~~~~~L~lv   56 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAES-PETCYLTNFSLEH--NGQRLDDFVELSEIEGIKDGCVLELV   56 (76)
T ss_pred             CChhhHHHHHHHHHHhC-ccccceeEEEEEE--CCCccCCchhhhhhhCCCCCcEEEEE
Confidence            67899999999999887 32 2223335556  89999888777665 47889998876

>KOG1769|consensus

Probab=93.43  E-value=0.22  Score=38.20  Aligned_cols=51  Identities=14%  Similarity=0.253  Sum_probs=45.9

Q ss_pred             CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      -+++..-|.+...++ .|++.+..|+.|  +|+.+++.+|=++++.++|++|.+
T Consensus        39 r~t~LkKLM~aYc~r-~Gl~~~s~RFlF--dG~rI~~~~TP~~L~mEd~D~Iev   89 (99)
T KOG1769|consen   39 RHTPLKKLMKAYCER-QGLSMNSLRFLF--DGQRIRETHTPADLEMEDGDEIEV   89 (99)
T ss_pred             cCChHHHHHHHHHHH-cCCccceEEEEE--CCcCcCCCCChhhhCCcCCcEEEE
Confidence            456788888999998 899999999999  799999999999999999999865

>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown

Probab=91.09  E-value=0.49  Score=37.69  Aligned_cols=55  Identities=29%  Similarity=0.415  Sum_probs=37.0

Q ss_pred             cccHHHHHHHHHHH---hCCCCcCcee------EEEc---------------CCCccc---CCchhhhhcCCCCCceEEE
Q psy9586           4 SFTVKDIKKEVHKA---KSQLYPDRQA------VRLE---------------IKGKIL---KDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         4 ~~TV~~LK~~i~~~---~~~i~~~rQr------L~~~---------------~~Gk~L---~d~ktL~~ygv~~~~tl~v   56 (233)
                      +.||.||++.+.+.   -+|++|=|-.      +...               +++=.|   +|+++|.++||.++++|-+
T Consensus        26 ~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nETEiSf  105 (122)
T PF10209_consen   26 DTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENETEISF  105 (122)
T ss_pred             cCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccceeee
Confidence            78999988877664   2577665542      1111               122356   6778999999999999976


Q ss_pred             ec
Q psy9586          57 KD   58 (233)
Q Consensus        57 kd   58 (233)
                      -+
T Consensus       106 F~  107 (122)
T PF10209_consen  106 FN  107 (122)
T ss_pred             eC
Confidence            43

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=90.23  E-value=1  Score=33.35  Aligned_cols=56  Identities=16%  Similarity=0.316  Sum_probs=41.8

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC--------CchhhhhcCCCCCceEEEecC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--------DSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~--------d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      ..+.||++|.+-++..  +-.++.-+|...=-.|.+.        ++.||+|.|+.+..+|.|.|+
T Consensus        22 ~~~~tl~~l~~fv~~~--~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~d~   85 (85)
T cd01774          22 LFTQSLRVIHDFLFSL--KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQDL   85 (85)
T ss_pred             CCCCcHHHHHHHHHhC--CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEecC
Confidence            3578999999999764  4456777776531235664        356999999999999999885

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=90.03  E-value=1.3  Score=32.05  Aligned_cols=55  Identities=15%  Similarity=0.115  Sum_probs=39.6

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCC---chhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d---~ktL~~ygv~~~~tl~vk   57 (233)
                      ++++||+||.+-+... .+.....-.|.-.--.+.+.|   ++||+|.|+...++|.++
T Consensus        22 ~~~~tl~~v~~~v~~~-~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~   79 (80)
T smart00166       22 PSSDTLRTVYEFVSAA-LTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE   79 (80)
T ss_pred             CCCCcHHHHHHHHHHc-ccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence            4789999999999654 455555566654323567753   479999999988888774

Present in FAF1 and Shp1p.

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=90.01  E-value=0.94  Score=32.10  Aligned_cols=53  Identities=21%  Similarity=0.176  Sum_probs=35.8

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |.|++|+.|+-++--++ -|+++++=.|..  ++|.|+-+-.+.-.|+-+|+++.+
T Consensus        13 vtp~~~l~~VL~eac~k-~~l~~~~~~L~h--~~k~ldlslp~R~snL~n~akLeL   65 (65)
T PF11470_consen   13 VTPNTTLNQVLEEACKK-FGLDPSSYDLKH--NNKPLDLSLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             --TTSBHHHHHHHHHHH-TT--GGG-EEEE--TTEEESSS-BHHHH---SS-EEEE
T ss_pred             ECCCCCHHHHHHHHHHH-cCCCccceEEEE--CCEEeccccceeecCCCCCCEEeC
Confidence            46889999977776666 589999778888  889999888999999999998764

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>KOG2628|consensus

Probab=88.50  E-value=1.6  Score=37.43  Aligned_cols=95  Identities=15%  Similarity=0.147  Sum_probs=64.0

Q ss_pred             hHhhhhHHHHHHHHhcCCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHH
Q psy9586         128 FCQLGNLSIHLALRDLRPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTS-CFPALLFASAGMYQMTVW  206 (233)
Q Consensus       128 ~~~~~n~~~h~~L~~LR~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~-~~~~~~f~~~~~~~m~~~  206 (233)
                      +-.++....|..-.+-+.    +.++-+      .|.+.|+..|-|.+=++-++|-.++.. .+..++|++++......|
T Consensus       101 mitag~~f~H~va~~k~~----~h~lv~------~GvY~y~RHPsY~g~flw~~gtq~~L~npis~v~f~~V~w~ff~~R  170 (201)
T KOG2628|consen  101 MITAGTSFTHYVATKKVS----DHKLVT------SGVYAYVRHPSYVGFFLWAAGTQTMLCNPISLVAFLLVVWRFFADR  170 (201)
T ss_pred             HHHHHHHHHHHHhhcccc----CceeEe------ccchhheeCchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhh
Confidence            334466677765543222    223444      699999999999998888888777654 445566777777777888


Q ss_pred             HHHHhHHHHhhCCC----CCCCceeeeccc
Q psy9586         207 ALGKHKNYKKEFPD----YPKQRKAIVPFV  232 (233)
Q Consensus       207 A~~~h~wY~~~F~~----yp~~RkaiIPfi  232 (233)
                      +....+-..+-|++    |.++-+.=|||+
T Consensus       171 i~~EE~~Li~fFg~~Y~eY~kkV~sGiPfi  200 (201)
T KOG2628|consen  171 IKEEEKYLISFFGSSYVEYAKKVPSGIPFI  200 (201)
T ss_pred             hhHHHHHHHHHhhHHHHHHHHhCCcCCCCC
Confidence            88777766666653    555444558886

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=88.34  E-value=1.2  Score=32.04  Aligned_cols=55  Identities=16%  Similarity=0.149  Sum_probs=38.9

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCc-eeEEEcCCCcccCC--chhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDR-QAVRLEIKGKILKD--SDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~r-QrL~~~~~Gk~L~d--~ktL~~ygv~~~~tl~vk   57 (233)
                      .+++||.+|.+-+..+ ..-+... -.|...--.+.+.+  +++|+|.|+..+++|+++
T Consensus        24 ~~~~tl~~l~~~v~~~-~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen   24 PKSDTLQDLYDFVESQ-LFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             ETTSBHHHHHHHHHHH-HHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             CCcchHHHHHHHHHHh-cCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            3688999999999887 3333332 46654323566643  369999999999999875

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=86.19  E-value=3.1  Score=29.72  Aligned_cols=53  Identities=13%  Similarity=0.255  Sum_probs=36.0

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC---CchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~---d~ktL~~ygv~~~~tl~vk   57 (233)
                      ++++||+||.+-+... . .....-+|.-.--.+.+.   +++||+|.|+. .+++.++
T Consensus        20 ~~~~tl~~l~~fv~~~-~-~~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~   75 (77)
T cd01767          20 NSTHKLSDVRDFVESN-G-PPAEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR   75 (77)
T ss_pred             CCCCCHHHHHHHHHHc-C-CCCCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence            4689999999999875 2 234445665432356664   46799999999 4555544

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=84.83  E-value=3.1  Score=34.75  Aligned_cols=63  Identities=17%  Similarity=0.205  Sum_probs=41.2

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCce-eEEEcCCCccc-CCchhhhhcCCCCCc------eEEEecCCCccc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQ-AVRLEIKGKIL-KDSDDIKSLGLKNGD------MVFIKDLGPQIG   64 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQ-rL~~~~~Gk~L-~d~ktL~~ygv~~~~------tl~vkdlg~qi~   64 (233)
                      +++++||.||+..|.+. .+++++.| .|....+|+.. +++..+.++...+++      .+.+.-.|+.=|
T Consensus        21 lp~~ttv~dL~~~l~~~-~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~l~~rl~GGKGG   91 (162)
T PF13019_consen   21 LPSTTTVSDLKDRLSER-LPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLRLSLRLRGGKGG   91 (162)
T ss_pred             CCCCCcHHHHHHHHHhh-cCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEEEEEeccCCCcc
Confidence            35789999999999998 67777775 35543344332 455566666655443      355677777655

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=84.62  E-value=2  Score=30.85  Aligned_cols=47  Identities=26%  Similarity=0.355  Sum_probs=30.1

Q ss_pred             ccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           5 FTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         5 ~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +||.||++.+.++++++-..+..+...-+|+...+     +.-+++|++|.+
T Consensus        27 ~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai   73 (80)
T TIGR01682        27 TTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAF   73 (80)
T ss_pred             cCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEE
Confidence            79999999999986543222232332226666654     456788888765

The C-terminal Gly-Gly of this model is critical to function.

>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus

Probab=83.99  E-value=1.5  Score=31.91  Aligned_cols=52  Identities=19%  Similarity=0.380  Sum_probs=34.9

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEE----cCCCcccCCchhhhhcCCCCCceE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRL----EIKGKILKDSDDIKSLGLKNGDMV   54 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~----~~~Gk~L~d~ktL~~ygv~~~~tl   54 (233)
                      +++.|+.+|+++|.+++.+++|+.+-+..    ++.|=.|+.+-+.+|. ..++++|
T Consensus        10 ~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~v   65 (73)
T PF10407_consen   10 DPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVV   65 (73)
T ss_pred             CCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEE
Confidence            68899999999999999999998876654    2344444444344332 2344444

This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=83.21  E-value=3.9  Score=29.77  Aligned_cols=52  Identities=19%  Similarity=0.210  Sum_probs=33.1

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC-CchhhhhcCCCCCce
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDIKSLGLKNGDM   53 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~-d~ktL~~ygv~~~~t   53 (233)
                      +.++||.||.+-+....+.-....-.|...=-+|.|. +++||+|.|+.+.+.
T Consensus        22 ~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v   74 (79)
T cd01770          22 NSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI   74 (79)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence            4679999999999876222112334454321245664 477999999986443

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.89  E-value=4.1  Score=34.16  Aligned_cols=58  Identities=22%  Similarity=0.295  Sum_probs=41.4

Q ss_pred             CCCCCCccceecccchhh-HHHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHHhHHHH
Q psy9586         158 SNPFTSLFDYVSCPNYTY-EFGSWLSFSLLTSC-FPALLFASAGMYQMTVWALGKHKNYK  215 (233)
Q Consensus       158 ~~P~gglF~~VscPnY~~-Eil~w~~f~l~~~~-~~~~~f~~~~~~~m~~~A~~~h~wY~  215 (233)
                      .+=+.|+|+++-.|||+. =+.+=+|..+.++- .++.+|..+-+.-+..|-++-.+-..
T Consensus       107 ~~v~sglfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l~~p~ya~~L~vRIr~EekaL~  166 (172)
T COG1755         107 QIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQAWYTALLFSPIYALLLYVRIRQEEKALA  166 (172)
T ss_pred             eeeccccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            333469999999999999 66677899998874 35566666666667776666555433

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=81.23  E-value=1.4  Score=31.82  Aligned_cols=50  Identities=24%  Similarity=0.238  Sum_probs=31.6

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +..+||++|++.+.++++++...++...+..+|+..++     +.-+++|++|-+
T Consensus        26 ~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~-----~~~l~dgDeVai   75 (82)
T PLN02799         26 PAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTE-----SAALKDGDELAI   75 (82)
T ss_pred             CCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCC-----CcCcCCCCEEEE
Confidence            45789999999998875554433333333336766543     345678888765

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=81.20  E-value=3.8  Score=28.93  Aligned_cols=48  Identities=21%  Similarity=0.266  Sum_probs=31.0

Q ss_pred             CCcccHHHHHHHHHHHhCC---CCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQ---LYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~---i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +.+.||.||.+++.++++.   ...+..++..  +|+..+     .+.-+++|++|.+
T Consensus        23 ~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~v--Ng~~v~-----~~~~l~~gD~v~i   73 (80)
T cd00754          23 PEGATVGELLDALEARYPGLLEELLARVRIAV--NGEYVR-----LDTPLKDGDEVAI   73 (80)
T ss_pred             CCCCcHHHHHHHHHHHCchHHHhhhhcEEEEE--CCeEcC-----CCcccCCCCEEEE
Confidence            3468999999999887432   1112223334  777766     3456788888865

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=81.16  E-value=5.9  Score=28.66  Aligned_cols=54  Identities=9%  Similarity=0.166  Sum_probs=37.9

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCC---chhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD---SDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d---~ktL~~ygv~~~~tl~vk   57 (233)
                      ++++|++||.+-++.. .+ ....-.|.-.=-.|.+.+   ++||+|.|+....+|++.
T Consensus        22 ~~~~tl~~v~~fV~~~-~~-~~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~   78 (79)
T cd01772          22 KAREQLAAVRLFVELN-TG-NGGPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT   78 (79)
T ss_pred             CCCChHHHHHHHHHHc-CC-CCCCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence            4689999999999875 32 223345553223566743   579999999999998774

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	7e-20
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	5e-08
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	2e-06
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	1e-05
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	1e-05
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	2e-05
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	3e-05
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	3e-05
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	3e-05
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	3e-05
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	4e-05
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	2e-04
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	2e-04
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	5e-04

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 80.0 bits (197), Expect = 7e-20
 Identities = 22/59 (37%), Positives = 33/59 (55%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL 59
          V    T+ +IK    K   Q YP RQ++RL+ KGK LKD D ++ L +     ++ +DL
Sbjct: 30 VEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL 88

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          VS   TVKD+K ++    + + P  Q  +L  KGK+L ++  +K   + +G  +
Sbjct: 28 VSPDCTVKDLKSQLQP-ITNVLPRGQ--KLIFKGKVLVETSTLKQSDVGSGAKL 78

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 Length = 107

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 12/52 (23%), Positives = 25/52 (48%)

Query: 3  GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          G +++  +K+ +     +  PD + + L   G+ LKD   +   G++ G  V
Sbjct: 43 GGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTV 94

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          V+ + T++ +K+E+ + + + +PD+    L   GKILKD D +   G+++G  V
Sbjct: 38 VTDTCTIQQLKEEISQ-RFKAHPDQL--VLIFAGKILKDPDSLAQCGVRDGLTV 88

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGD---MVFIK 57
          V    T  ++K+++H   + L P  Q  ++  KG  + +   ++ + + +G    +V   
Sbjct: 33 VPLDSTGSELKQKIHS-ITGLPPAMQ--KVMYKGL-VPEDKTLREIKVTSGAKIMVVGST 88

Query: 58 DLGPQIG 64
            GP  G
Sbjct: 89 ISGPSSG 95

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 44.2 bits (103), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 29/76 (38%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG 60
          +    TVK +K+++   K +        +L   GKIL D   I+   +   + V +    
Sbjct: 24 MEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 83

Query: 61 PQIGWSTVFMAEYAGP 76
           + G  T    E +  
Sbjct: 84 TKAGQGTSAPPEASPT 99

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          V  + +V+  K+E+ K + + + D+    L   GKILKD D +   G+ +G  V
Sbjct: 41 VPENSSVQQFKEEISK-RFKSHTDQL--VLIFAGKILKDQDTLSQHGIHDGLTV 91

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 6/67 (8%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGD---MVFIK 57
          ++ +  V+  KK++ K       DR    L   GKIL+D D +   G+ +G    +V   
Sbjct: 33 LAENSNVRRFKKQISK-YLHCNADRL--VLIFTGKILRDQDILSQRGILDGSTVHVVVRS 89

Query: 58 DLGPQIG 64
            GP  G
Sbjct: 90 HSGPSSG 96

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          +  S T+ + K ++ +        +   +L   GK+L+DS  +   GLK+GD V
Sbjct: 18 LEPSNTILETKTKLAQ-SISCEESQI--KLIYSGKVLQDSKTVSECGLKDGDQV 68

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          V+ + T++ +K+E+ + + + +PD+    L   GKILKD D +   G+++G  V
Sbjct: 33 VTDTCTIQQLKEEISQ-RFKAHPDQL--VLIFAGKILKDPDSLAQCGVRDGLTV 83

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A Length = 90

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAV-RLEIKGKILKDSDDIKSLGLKNGDMV 54
          +S   TV D+K+ +    + + P+RQ +  L++KGK  ++   + +L LK    +
Sbjct: 24 LSEDDTVLDLKQFLKT-LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKI 77

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          V  + +V+  K+ + K + +   D+    L   GKILKD D +   G+ +G  V
Sbjct: 48 VPENSSVQQFKEAISK-RFKSQTDQL--VLIFAGKILKDQDTLIQHGIHDGLTV 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 39/241 (16%), Positives = 73/241 (30%), Gaps = 59/241 (24%)

Query: 19  SQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK-DLGPQIGWSTVFMAEYA--- 74
           +Q++      RL+   K+ +       L L+    V I   LG   G  T    +     
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQ-----ALLELRPAKNVLIDGVLG--SG-KTWVALDVCLSY 174

Query: 75  --GPLFVYLIFYYRPWIFYGSEAASKPYSYVAHLAALCYIV--HYTKRVLETLTP----- 125
                  + IF    W+   +   + P + +  L  L Y +  ++T R   +        
Sbjct: 175 KVQCKMDFKIF----WLNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 126 SVFCQLGNLSIH-------LALRDLRPPGT----NVR-RIPVATSNPFTSLFDYVSCPNY 173
           S+  +L  L          L L +++        N+  +I + T      + D++S    
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATT 286

Query: 174 TYEFGSWLSFSLLTSCFPAL-LFASAGMYQMTVWALGKHKNYKKEFPDYPKQRKAIVPFV 232
           T+      S +L         L                 K       D P++     P  
Sbjct: 287 THISLDHHSMTLTPD--EVKSLLL---------------KYLDCRPQDLPREVLTTNPRR 329

Query: 233 I 233
           +
Sbjct: 330 L 330

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          V+   TV   K+ ++K  + +    Q  RL   GKILKD   ++S  +++G  V
Sbjct: 20 VAPESTVLQFKEAINK-ANGIPVANQ--RLIYSGKILKDDQTVESYHIQDGHSV 70

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          V+   TV   K+ ++K  + +    Q  RL   GKILKD   ++S  +++G  V
Sbjct: 44 VAPESTVLQFKEAINK-ANGIPVANQ--RLIYSGKILKDDQTVESYHIQDGHSV 94

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLY--PDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          +    TVK +K+++   K +       Q  +L   GKIL D   I+   +   + V
Sbjct: 22 MEPDETVKVLKEKIEAEKGRDAFPVAGQ--KLIYAGKILSDDVPIRDYRIDEKNFV 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.66
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.56
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.54
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.53
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.52
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.49
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.49
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.47
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.46
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.45
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.44
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.44
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.43
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.42
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.42
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.41
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.41
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.4
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.4
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.4
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.4
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.4
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.39
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.39
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.39
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.39
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.39
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.39
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.39
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.38
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.38
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.38
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.38
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.38
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.38
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.38
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.37
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.37
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.36
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.36
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.36
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.36
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.36
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.35
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.35
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.35
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.35
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.34
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.34
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.33
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.33
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.32
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.32
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.31
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	98.98
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.3
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.29
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.28
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.28
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.28
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.28
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.27
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.27
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.24
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.23
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.23
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.23
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.23
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.23
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.23
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.21
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.21
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.18
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.17
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.16
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.16
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.15
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.15
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.15
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.15
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.14
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.14
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.13
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	98.92
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	98.91
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	98.9
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	98.74
4a2n_B	194	Isoprenylcysteine carboxyl methyltransferase; memb	98.74
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	98.71
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	98.68
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	98.64
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	98.59
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	98.45
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	98.4
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	98.4
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	98.32
2pjh_A	80	Protein NPL4, nuclear protein localization protein	97.96
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	97.77
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	97.73
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	97.6
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	97.55
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	97.53
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	97.21
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	96.95
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	96.7
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	96.34
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	96.29
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	95.43
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	95.33
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	94.55
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	93.0
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	92.61
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	91.75
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	91.29
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	91.28
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	90.7
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	90.35
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	87.97
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	87.95
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	87.08
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	87.02
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	86.47
1y8x_B	98	Ubiquitin-activating enzyme E1C; ubiquitin-conjuga	86.18
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	85.36
3onh_A	127	Ubiquitin-activating enzyme E1-like; ligase, SUMO	85.04
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	83.63
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	83.47
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	83.01

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=4e-17  Score=121.42  Aligned_cols=59  Identities=37%  Similarity=0.587  Sum_probs=55.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      |++++||+|||++|+++.+|+||+||||++..+|++|+|+++|++||+++|+||++|||
T Consensus        30 v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~KDL   88 (88)
T 2dzj_A           30 VEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFRDL   88 (88)
T ss_dssp             ECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEECCC
T ss_pred             cCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEEEeC
Confidence            47899999999999995489999999999977899999999999999999999999997

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.56  E-value=4.2e-15  Score=111.59  Aligned_cols=65  Identities=22%  Similarity=0.366  Sum_probs=53.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEE--EecC-CCccchhhh
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVF--IKDL-GPQIGWSTV   68 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~--vkdl-g~qi~w~~v   68 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|+  +++. |+|++|++|
T Consensus        17 v~~~~TV~~LK~~I~~~-~gi~~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~~~~v   84 (98)
T 1yx5_B           17 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPNSSSV   84 (98)
T ss_dssp             CCTTCBHHHHHHHHHHH-TCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEECCCCC--------
T ss_pred             ECCCCcHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCccccC
Confidence            57889999999999999 899999999999  89999999999999999999987  5777 579999965

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.54  E-value=4.1e-15  Score=111.66  Aligned_cols=53  Identities=19%  Similarity=0.269  Sum_probs=50.8

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |+|++||.+||++|+++ +|+||++|||++  .|++|+|+.||+||||++|+||++
T Consensus        38 v~p~DTI~~LK~~I~~k-~Gip~~qQrLif--~Gk~LkD~~TL~dY~I~dgstLhL   90 (93)
T 3plu_A           38 CLGEDSVGDFKKVLSLQ-IGTQPNKIVLQK--GGSVLKDHISLEDYEVHDQTNLEL   90 (93)
T ss_dssp             EETTSBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             ECCcCHHHHHHHHHHHH-hCCCHHHEEEEe--CCEEccCcCCHHHcCCCCCCEEEE
Confidence            46899999999999999 899999999999  999999999999999999999986

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.53  E-value=7.5e-15  Score=110.05  Aligned_cols=63  Identities=14%  Similarity=0.075  Sum_probs=56.2

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-CCcc----cCCchhhhhcCCCCCceEEEecCCCccc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKI----LKDSDDIKSLGLKNGDMVFIKDLGPQIG   64 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-~Gk~----L~d~ktL~~ygv~~~~tl~vkdlg~qi~   64 (233)
                      +++++||++||++|+++ +|+|+++|||++.. +|+.    ++|+++|++||+++|++||++|++||+.
T Consensus        25 v~~~~TV~~lK~ki~~~-~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~~P~~~   92 (95)
T 1v6e_A           25 YSRSLTIAEFKCKLELV-VGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGSGP   92 (95)
T ss_dssp             ECTTSBHHHHHHHHHHH-TCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCSCCSS
T ss_pred             cCccCHHHHHHHHHHHH-HCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEECCcccc
Confidence            46889999999999999 99999999999943 3454    4899999999999999999999999975

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.52  E-value=6.8e-15  Score=108.91  Aligned_cols=60  Identities=17%  Similarity=0.199  Sum_probs=54.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-----CCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-----KGKILKDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-----~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      +++++||++||++|+++ +|+||++|||++.+     .|+.|+|+++|++||+++|+|||+.|..|
T Consensus        21 ~~~s~TI~~lK~ki~~~-~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P   85 (86)
T 4b6w_A           21 YGLAQTIESIKENVFTH-FATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP   85 (86)
T ss_dssp             EETTSBHHHHHHHHHTT-SCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred             cCccCcHHHHHHHHHHH-HCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence            36789999999999999 99999999999732     37899999999999999999999999887

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.49  E-value=1.4e-14  Score=110.32  Aligned_cols=54  Identities=15%  Similarity=0.137  Sum_probs=51.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.|||++|+++ +|+|++||||++  .||+|+|+++|+||||++|+||++.
T Consensus        45 v~p~dTV~~lK~~Ia~k-~Gip~~qQrLi~--~Gk~L~D~~TL~dygI~~gstlhL~   98 (100)
T 1uh6_A           45 CNTDDTIGDLKKLIAAQ-TGTRWNKIVLKK--WYTIFKDHVSLGDYEIHDGMNLELY   98 (100)
T ss_dssp             EETTSBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred             eCCCCcHHHHHHHHHHH-hCCCHHHEEEEE--CCEECCCCCCHHHcCCCCCCEEEEE
Confidence            46899999999999999 899999999999  8999999999999999999999873

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.49  E-value=2.8e-14  Score=108.61  Aligned_cols=56  Identities=11%  Similarity=0.195  Sum_probs=52.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      |++++||.+||++|+++ +|+||++|||+|  +||+|+|++||+||||++|++|++--+
T Consensus        36 v~~~~TV~~lK~kI~~k-~gip~~qQrLI~--~GKiL~D~~TL~~y~I~~gsti~vl~l   91 (100)
T 1wju_A           36 TRLHITGRELRSKIAET-FGLQENYIKIVI--NKKQLQLGKTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             EESSSBHHHHHHHHHHH-TTCCSTTCEEEE--TTEECCTTSBHHHHTCCSSEEEEEECC
T ss_pred             eCCcCHHHHHHHHHHHH-HCcCHHHeEEEe--CCeECCCCCcHHHcCCCCCCEEEEEEE
Confidence            46889999999999999 899999999999  899999999999999999999976544

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.47  E-value=7.6e-14  Score=101.90  Aligned_cols=61  Identities=15%  Similarity=0.307  Sum_probs=55.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCCccc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGPQIG   64 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~qi~   64 (233)
                      |++++||++||++|+++ .++|+++|||++  +|+.|+|+++|++||+++|++|++  +.+|++++
T Consensus        24 v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~--~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~~~   86 (87)
T 1wh3_A           24 INPNSFILGLKQQIEDQ-QGLPKKQQQLEF--QGQVLQDWLGLGIYGIQDSDTLILSKKKGSGPSS   86 (87)
T ss_dssp             ECSSSBHHHHHHHHHHH-TCCCTTTEEEEE--TTEECCSSSBHHHHTCCTTEEEEEEECSCCCSCC
T ss_pred             eCCCChHHHHHHHHHHH-hCCChHHEEEEE--CCEEccCCCCHHHCCCCCCCEEEEEEeccCCCCC
Confidence            46889999999999999 899999999999  899999999999999999999874  67777654

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.46  E-value=6.3e-14  Score=100.69  Aligned_cols=53  Identities=28%  Similarity=0.311  Sum_probs=50.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|+||++
T Consensus        21 v~~~~tV~~lK~~i~~~-~gip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~l~l   73 (79)
T 3phx_B           21 VRLTQTVAHLKQQVSGL-EGVQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFM   73 (79)
T ss_dssp             ECTTSBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             ECCcChHHHHHHHHHhh-cCCCHHHEEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence            46889999999999999 899999999999  899999999999999999999986

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.45  E-value=1e-13  Score=98.65  Aligned_cols=56  Identities=29%  Similarity=0.399  Sum_probs=52.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++.+-
T Consensus        20 v~~~~tV~~LK~~i~~~-~~i~~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A           20 VAPESTVLQFKEAINKA-NGIPVANQRLIY--SGKILKDDQTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             ECCCCcHHHHHHHHHHH-hCCCHHHEEEEE--CCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence            46889999999999999 799999999999  899999999999999999999999764

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.44  E-value=7.3e-14  Score=109.48  Aligned_cols=62  Identities=18%  Similarity=0.273  Sum_probs=55.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-CCc---cc-CCchhhhhcCCCCCceEEEecCCCcc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGK---IL-KDSDDIKSLGLKNGDMVFIKDLGPQI   63 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-~Gk---~L-~d~ktL~~ygv~~~~tl~vkdlg~qi   63 (233)
                      +++++||++||++|+++ +|+||++|||++.. +|+   +| +|+++|++||+++|++||++|++||+
T Consensus        24 v~~~~TV~~lK~ki~~~-~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~p~~   90 (122)
T 1t0y_A           24 YPAGMSLNDLKKKLELV-VGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTGGN   90 (122)
T ss_dssp             EETTSBHHHHHHHHHHH-HCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTTCC
T ss_pred             eCCCCcHHHHHHHHHHH-hCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCCCCC
Confidence            35789999999999999 89999999999943 345   34 78999999999999999999999998

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.44  E-value=7.2e-14  Score=102.62  Aligned_cols=54  Identities=11%  Similarity=0.217  Sum_probs=50.9

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcc-cCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKI-LKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~-L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ +|+|+++|||++  +|+. |+|+++|++||+++|++|++.
T Consensus        27 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~lL~D~~tL~~y~I~~gs~i~lv   81 (84)
T 2kk8_A           27 VDYRDTLLVVKQKIERS-QHIPVSKQTLIV--DGIVILREDLTVEQCQIVPTSDIQLE   81 (84)
T ss_dssp             ECTTSBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCCSSSBHHHHTCCTTSCEEEE
T ss_pred             ECCCChHHHHHHHHHHH-HCcChHHEEEEE--CCEEecCCcCCHHHcCCCCCCEEEEE
Confidence            46889999999999999 899999999999  8999 999999999999999999874

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.1e-13  Score=102.69  Aligned_cols=53  Identities=23%  Similarity=0.248  Sum_probs=49.7

Q ss_pred             CCCcccHHHHHHHH-HHHhCCCCcCceeEEEcCCCcccCCchhhhhcCC-CCCceEEE
Q psy9586           1 VSGSFTVKDIKKEV-HKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGL-KNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i-~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv-~~~~tl~v   56 (233)
                      +++++||.+||++| +++ +|+|+++|||+|  +||+|+|+++|++||+ ++|++|++
T Consensus        20 v~~~~TV~~lK~~I~~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~y~I~~~~stl~v   74 (87)
T 2lxa_A           20 FSPSDTILQIKQHLISEE-KASHISEIKLLL--KGKVLHDNLFLSDLKVTPANSTITV   74 (87)
T ss_dssp             CCTTCBHHHHHHHHHHTT-SCSSSTTEEEEE--TTEECCTTCBHHHHCCCGGGCEEEE
T ss_pred             CCCCCcHHHHHHHHHHHh-cCCChHHEEEEE--CCEECcCcCCHHHcCCCCCCCEEEE
Confidence            35899999999999 888 899999999999  9999999999999999 69999987

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.42  E-value=1.2e-13  Score=98.76  Aligned_cols=54  Identities=15%  Similarity=0.310  Sum_probs=50.9

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++.
T Consensus        21 v~~~~tv~~lK~~i~~~-~gip~~~qrL~~--~g~~L~d~~tL~~~~i~~g~~i~l~   74 (78)
T 2faz_A           21 LSRLTKVEELRRKIQEL-FHVEPGLQRLFY--RGKQMEDGHTLFDYEVRLNDTIQLL   74 (78)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTCBTTTTTCCTTCEEEEE
T ss_pred             cCCCCCHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCCCCHHHcCCCCCCEEEEE
Confidence            46889999999999999 899999999999  8999999999999999999999874

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.42  E-value=1.7e-13  Score=101.09  Aligned_cols=53  Identities=19%  Similarity=0.356  Sum_probs=50.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .++|+++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        17 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~l~l   69 (88)
T 4fbj_B           17 IEPTDKVERIKERVEEK-EGIPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHL   69 (88)
T ss_dssp             CCTTCBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCTTSBTTTTTCCTTCEEEE
T ss_pred             ECCCCCHHHHHHHHHHH-HCcChhHEEEEE--CCeECCCCCcHHHcCCCCCCEEEE
Confidence            57899999999999999 799999999999  899999999999999999999876

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.41  E-value=2e-13  Score=103.58  Aligned_cols=58  Identities=29%  Similarity=0.423  Sum_probs=53.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++....|
T Consensus        44 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~~gI~~g~tI~lv~~~P  101 (101)
T 3m63_B           44 VAPESTVLQFKEAINKA-NGIPVANQRLIY--SGKILKDDQTVESYHIQDGHSVHLVKSQP  101 (101)
T ss_dssp             CCTTSBHHHHHHHHHHH-HSCCSTTCCEEE--TTEECCTTSBTTTTTCCTTEEEEECCCC-
T ss_pred             eCCCCCHHHHHHHHHHH-HCcChHHEEEEE--CCEECCCcCcHHHCCCCCCCEEEEEeCCC
Confidence            57899999999999999 799999999999  89999999999999999999999876554

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.41  E-value=3.3e-13  Score=97.91  Aligned_cols=59  Identities=22%  Similarity=0.271  Sum_probs=52.5

Q ss_pred             CCCcccHHHHHHHHHHHh--CCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAK--SQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~--~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      |++++||++||++|+++.  +|+++++|||++  +|+.|+|+++|++||+++|++|++..-.+
T Consensus        22 v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~   82 (85)
T 2wyq_A           22 MEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKILSDDVPIRDYRIDEKNFVVVMVTKT   82 (85)
T ss_dssp             ECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEE--TTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred             ECCCCCHHHHHHHHHhhccccCCCHHHeEEEE--CCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence            468899999999999963  789999999999  89999999999999999999999876544

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.40  E-value=4.2e-13  Score=99.75  Aligned_cols=53  Identities=17%  Similarity=0.337  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhC--CCCcCceeEEEcCCCcccCCchhhhhc--CCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKS--QLYPDRQAVRLEIKGKILKDSDDIKSL--GLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~--~i~~~rQrL~~~~~Gk~L~d~ktL~~y--gv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ .  +++++||||++  +|+.|+|+++|++|  |++++++||+
T Consensus        26 v~~~~TV~~lK~~I~~~-~~~~i~~~~QrLi~--~Gk~L~D~~tL~~~~~~i~~~~~i~l   82 (93)
T 1wgd_A           26 GDRGWSVGHLKAHLSRV-YPERPRPEDQRLIY--SGKLLLDHQCLRDLLPKQEKRHVLHL   82 (93)
T ss_dssp             CCTTSCHHHHHHHHHHH-STTCCCTTTCEEEE--TTEECCSSSCHHHHSCSSSCSEEEEE
T ss_pred             cCCCCcHHHHHHHHHHH-hcCCCChHHeEEEE--CCEECcCcCCHHHHhcCCCCCCEEEE
Confidence            45899999999999998 6  99999999999  89999999999999  9999999986

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.40  E-value=3.1e-13  Score=95.39  Aligned_cols=53  Identities=19%  Similarity=0.356  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .++|+++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        17 v~~~~tv~~lK~~i~~~-~~i~~~~q~L~~--~g~~L~d~~tL~~~~i~~g~~i~l   69 (76)
T 1ndd_A           17 IEPTDKVERIKERVEEK-EGIPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHL   69 (76)
T ss_dssp             CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             ECCCChHHHHHHHHHHH-HCcChHHEEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence            57899999999999999 799999999999  899999999999999999999875

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.40  E-value=1.9e-13  Score=103.32  Aligned_cols=60  Identities=25%  Similarity=0.287  Sum_probs=52.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-CCcc---c-CCchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKI---L-KDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-~Gk~---L-~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      |++++||++||++|+++ +|+||++|||++.. +|+.   | +|+++|++||+++|++|++.|..|
T Consensus        33 v~~~~TV~~LK~kIe~~-~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~~p   97 (97)
T 2kj6_A           33 FSPQMSVEAVKEKLWKK-CGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDLDP   97 (97)
T ss_dssp             ECTTCCHHHHHHHHHHH-HCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEECCC
T ss_pred             eCCCChHHHHHHHHHHH-HCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeCCC
Confidence            46889999999999999 89999999999942 2343   4 889999999999999999999765

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.40  E-value=4.3e-13  Score=98.37  Aligned_cols=58  Identities=17%  Similarity=0.277  Sum_probs=52.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      |++++||++||++|+++ .++|+++|||++  +|+.|+|+++|++||+++|++|++  +..|+
T Consensus        26 v~~~~tV~~lK~~i~~~-~gip~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG   85 (89)
T 1wy8_A           26 VSRKATIEELRERVWAL-FDVRPECQRLFY--RGKQLENGYTLFDYDVGLNDIIQLLVRPDSG   85 (89)
T ss_dssp             ECTTCBHHHHHHHHHHH-SCCCTTTEEEEE--TTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred             cCCCCCHHHHHHHHHHH-HCcChhhEEEEE--CCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence            46889999999999999 899999999999  899999999999999999999875  44444

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.40  E-value=1.4e-13  Score=107.46  Aligned_cols=53  Identities=23%  Similarity=0.268  Sum_probs=50.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCC-------CceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKN-------GDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~-------~~tl~v   56 (233)
                      +++++||.+||++|+++ +|+||++|||++  +|++|+|++||+|||+++       ++||++
T Consensus        18 ve~sdTV~~lK~kI~~~-~giPp~qQrLI~--~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~L   77 (118)
T 4ajy_B           18 AKESSTVFELKRIVEGI-LKRPPDEQRLYK--DDQLLDDGKTLGECGFTSQTARPQAPATVGL   77 (118)
T ss_dssp             EETTSBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTTTTTCCGGGSBTTBCEEEEE
T ss_pred             cCCCChHHHHHHHHHHH-HCCCHHHeEEEe--CCeECCCcCCHHHcCCCcCcccCCCCCEEEE
Confidence            46889999999999999 899999999999  899999999999999999       999986

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.39  E-value=1.8e-13  Score=100.80  Aligned_cols=55  Identities=27%  Similarity=0.280  Sum_probs=51.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD   58 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd   58 (233)
                      |++++||++||++|+++ +|+|+++|||++  +|+.|+|+++|++||+++|++|++..
T Consensus        21 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~Gk~L~D~~tL~~~~I~~g~~i~l~~   75 (88)
T 2hj8_A           21 VRLTQTVAHLKQQVSGL-EGVQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFMNL   75 (88)
T ss_dssp             EESSSBHHHHHHHHHHH-TCSCTTTEEEES--SSSCCCTTSBHHHHHCSTTCEEEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-hCCChhHEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEE
Confidence            46789999999999999 899999999999  89999999999999999999998743

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.39  E-value=3e-13  Score=101.25  Aligned_cols=54  Identities=19%  Similarity=0.266  Sum_probs=50.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCc-hhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~-ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ +|+|+++|||++  +|+.|+|+ ++|++||+++|++|++.
T Consensus        31 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~~tL~~ygI~~gstl~lv   85 (94)
T 2kan_A           31 VDRTETVSSLKDKIHIV-ENTPIKRMQLYY--SGIELADDYRNLNEYGITEFSEIVVF   85 (94)
T ss_dssp             ECTTCBHHHHHHHHHHH-SSSCTTTEEEEE--TTEEECCTTSBHHHHTCCTTEEEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-HCcCHHHEEEEE--CCEECCCCcccHHHCCCCCCCEEEEE
Confidence            46889999999999999 899999999999  89999999 99999999999999863

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.39  E-value=4.2e-13  Score=99.48  Aligned_cols=54  Identities=26%  Similarity=0.378  Sum_probs=51.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEE---EcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVR---LEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~---~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.|||++|+++ +|+|++||||+   +  +|++|+|+++|++||+++|++|++-
T Consensus        24 v~~~~TV~~lK~~I~~~-~gip~~~QkLi~~k~--~Gk~L~D~~~L~~~~i~~g~~l~l~   80 (90)
T 1v5t_A           24 LSEDDTVLDLKQFLKTL-TGVLPERQKLLGLKV--KGKPAENDVKLGALKLKPNTKIMMM   80 (90)
T ss_dssp             CCSSSBHHHHHHHHHHH-TCCCTTTCEEESCEE--TTEECCTTSBHHHHTCCTTEEEEEE
T ss_pred             eCCCCCHHHHHHHHHHH-HCcCHHHeEEEeecc--CCcCcCCCCCHHHcCCCCCCEEEEE
Confidence            57899999999999999 99999999999   8  8999999999999999999999874

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=3.7e-13  Score=96.56  Aligned_cols=54  Identities=19%  Similarity=0.223  Sum_probs=50.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++.
T Consensus        24 v~~~~tV~~LK~~i~~~-~~i~~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l~   77 (81)
T 2dzi_A           24 VPEDELVSTLKQLVSEK-LNVPVRQQRLLF--KGKALADGKRLSDYSIGPNSKLNLV   77 (81)
T ss_dssp             ECSSCBHHHHHHHHHHH-TCCCTTTCEEEE--TTEECCTTSBGGGGTCCSSBCCEEE
T ss_pred             ECCCCcHHHHHHHHHHH-HCcCHHHEEEEE--CCeECCCCCcHHHcCCCCCCEEEEE
Confidence            46889999999999999 899999999999  8999999999999999999999874

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.39  E-value=2.7e-13  Score=100.26  Aligned_cols=54  Identities=20%  Similarity=0.401  Sum_probs=50.8

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.+||++|+++ .|+++++|||++  +|+.|+|+++|++||+++|++|++.
T Consensus        34 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~   87 (91)
T 3v6c_B           34 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLV   87 (91)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred             ECCCCCHHHHHHHHHhh-hCCChhhEEEEE--CCeECCCcCcHHHCCCCCCCEEEEE
Confidence            46889999999999999 799999999999  8999999999999999999999874

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.39  E-value=7.9e-13  Score=98.79  Aligned_cols=58  Identities=22%  Similarity=0.318  Sum_probs=52.6

Q ss_pred             CCCcccHHHHHHHHHHHh--CCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCC
Q psy9586           1 VSGSFTVKDIKKEVHKAK--SQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLG   60 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~--~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg   60 (233)
                      |++++||++||++|+++.  +|+|+++|||++  +|+.|+|+++|++||+++|++|++....
T Consensus        17 v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~g~~i~l~~~~   76 (95)
T 1uel_A           17 IDPEETVKALKEKIESEKGKDAFPVAGQKLIY--AGKILNDDTALKEYKIDEKNFVVVMVTK   76 (95)
T ss_dssp             CCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE--TTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred             ECCCCHHHHHHHHHHhhcccCCCChhhEEEEE--CCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence            578999999999999974  689999999999  8999999999999999999999875543

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.39  E-value=2.3e-13  Score=102.45  Aligned_cols=57  Identities=11%  Similarity=0.152  Sum_probs=50.6

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCc---cc-CCchhhhhcCCCCCceEEEec
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK---IL-KDSDDIKSLGLKNGDMVFIKD   58 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk---~L-~d~ktL~~ygv~~~~tl~vkd   58 (233)
                      +++++||++||++|+++ +|+||++|||++...|+   .| +|+++|++||+++|+||++.|
T Consensus        34 v~~~~TV~~LK~kI~~~-~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD   94 (95)
T 2kjr_A           34 LAKDLTVAQLKTKLEIL-TGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD   94 (95)
T ss_dssp             EETTCBHHHHHHHHHHH-HCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred             eCccCHHHHHHHHHHHH-HCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence            35789999999999999 89999999999943355   55 899999999999999999988

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.38  E-value=3.6e-13  Score=97.50  Aligned_cols=58  Identities=24%  Similarity=0.432  Sum_probs=51.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      |++++||++||++|+++ .++|+++|||++  +|+.|+|+++|++||++++++|++  +-.|+
T Consensus        20 v~~~~tV~~lK~~i~~~-~~ip~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG   79 (85)
T 3n3k_B           20 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIHNHSALYLLLKLRGG   79 (85)
T ss_dssp             CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred             ECCCCcHHHHHHHHHHH-HCCCHHHEEEEE--CCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence            57899999999999999 799999999999  899999999999999999999875  44443

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.38  E-value=3.4e-13  Score=99.07  Aligned_cols=55  Identities=27%  Similarity=0.481  Sum_probs=51.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD   58 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd   58 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++..
T Consensus        28 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~l~l~~   82 (85)
T 2kd0_A           28 VSPDCTVKDLKSQLQPI-TNVLPRGQKLIF--KGKVLVETSTLKQSDVGSGAKLMLMA   82 (85)
T ss_dssp             ECTTSBHHHHHHHHHHH-HCCCTTTCEEEE--TTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred             ECCCCcHHHHHHHHHHH-HCcChHHEEEEE--CCeECCCcCCHHHCCCCCCCEEEEEE
Confidence            46889999999999999 899999999999  89999999999999999999998754

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.38  E-value=3.8e-13  Score=100.34  Aligned_cols=53  Identities=28%  Similarity=0.375  Sum_probs=50.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        34 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~y~I~~gstI~l   86 (93)
T 2l7r_A           34 VTGQETVAQIKAHVASL-EGIAPEDQVVLL--AGAPLEDEATLGQCGVEALTTLEV   86 (93)
T ss_dssp             CCSSCBHHHHHHHHHHH-HTCCGGGCEEEE--TTEECCTTSBHHHHTCCSSCEEEE
T ss_pred             eCCCCcHHHHHHHHHHH-hCcChhHEEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence            57899999999999999 899999999999  899999999999999999999986

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.38  E-value=3.9e-13  Score=103.06  Aligned_cols=58  Identities=24%  Similarity=0.350  Sum_probs=52.9

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCC-CCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGL-KNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv-~~~~tl~vkdlg~   61 (233)
                      |++++||.+||++|+++ .|+||++|||++  +|+.++|++||++||+ ++|+|+|+.-++.
T Consensus        43 V~ps~TV~~LK~~I~~k-~Gipp~~QRli~--ggkll~D~~TL~~ygI~~~G~t~hL~l~~~  101 (105)
T 4dbg_A           43 VRPDMTVASLKDMVFLD-YGFPPVLQQWVI--GQRLARDQETLHSHGVRQNGDSAYLYLLSA  101 (105)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEEECTTCBTGGGTCCSTTCEEEEEECCC
T ss_pred             ECCcChHHHHHHHHHHH-hCCCHHHEEEec--cCeEccCcCcHHHcCCCCCCCEEEEEEEec
Confidence            47899999999999999 799999999999  8888899999999999 6999999876654

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.38  E-value=3.5e-13  Score=98.28  Aligned_cols=53  Identities=19%  Similarity=0.356  Sum_probs=50.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ .++|+++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        29 v~~~~tV~~lK~~i~~~-~gip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~i~l   81 (88)
T 3dbh_I           29 IEPTDKVERIKERVEEK-EGIPPQQQRLIY--SGKQMNDEKTAADYKILGGSVLHL   81 (88)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGCCEEE--TTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             ECCCCCHHHHHHHHHHH-HCcCHHHEEEEE--CCeECCCCCcHHHcCCCCCCEEEE
Confidence            46889999999999999 799999999999  899999999999999999999986

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.38  E-value=6.1e-14  Score=110.58  Aligned_cols=70  Identities=21%  Similarity=0.317  Sum_probs=8.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEE--EecCCCccchhhhhhHHh
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVF--IKDLGPQIGWSTVFMAEY   73 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~--vkdlg~qi~w~~vf~~Ey   73 (233)
                      |++++||+|||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|+||+  ++..|+++.|....+.++
T Consensus        17 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~~~~sl~~la~k   88 (128)
T 3u5e_m           17 VESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRLRGGIIEPSLKALASK   88 (128)
T ss_dssp             ---------------------------------------------------------------CCCHHHHHHHHH
T ss_pred             eCCCCCHHHHHHHHHHH-hCcChHHEEEEE--CCEECCCCCchhhhccCCCCEEEEEEEcCCCCCChhHHHHHHH
Confidence            56899999999999999 899999999999  89999999999999999999876  588899999986666553

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.38  E-value=3.8e-13  Score=101.87  Aligned_cols=54  Identities=22%  Similarity=0.235  Sum_probs=50.0

Q ss_pred             CCCcccHHHHHHHH-HHHhCCCCcCceeEEEcCCCcccCCchhhhhcCC-CCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEV-HKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGL-KNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i-~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv-~~~~tl~vk   57 (233)
                      |++++||.+||++| +++ +|+|+++|||+|  +|++|+|+++|++||+ ++|++|++-
T Consensus        38 v~~~~TV~~lK~~I~~~~-~gip~~~QrLi~--~Gk~L~D~~tL~dy~I~~~g~ti~lm   93 (98)
T 4a20_A           38 FSPSDTILQIKQHLISEE-KASHISEIKLLL--KGKVLHDNLFLSDLKVTPANSTITVM   93 (98)
T ss_dssp             ECTTCBHHHHHHHHHHTT-SCSCGGGEEEEE--TTEEECTTCBGGGSCCBTTBCEEEEE
T ss_pred             cCCCChHHHHHHHHHHHh-cCCChhhEEEEE--CCEECcCcCCHHHcCcCCCCCEEEEE
Confidence            35899999999999 776 899999999999  9999999999999999 999999874

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.37  E-value=5e-13  Score=98.53  Aligned_cols=58  Identities=19%  Similarity=0.379  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      |++++||++||++|+++ .++|+++|||++  +|+.|+|+++|++||+++|++|++  +..|+
T Consensus        26 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG   85 (88)
T 1sif_A           26 MEPSDTIENLKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   85 (88)
T ss_dssp             CCTTSBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred             ECCCChHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence            57899999999999999 799999999999  899999999999999999999875  44444

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.37  E-value=6.3e-13  Score=93.83  Aligned_cols=53  Identities=21%  Similarity=0.416  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ .++|+++|||.+  +|+.|+|+++|++||+++|++|++
T Consensus        17 v~~~~tv~~lK~~i~~~-~~i~~~~q~L~~--~g~~L~d~~tL~~~~i~~g~~i~l   69 (76)
T 3a9j_A           17 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQRESTLHL   69 (76)
T ss_dssp             CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTCBTGGGTCCTTCEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-HCcCHHHeEEEE--CCeECCCCCcHHHcCCCCCCEEEE
Confidence            57889999999999999 799999999999  899999999999999999999876

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.36  E-value=7.4e-13  Score=101.15  Aligned_cols=59  Identities=24%  Similarity=0.330  Sum_probs=53.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCCc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGPQ   62 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~q   62 (233)
                      |++++||.+||++|+++ .|+++++|||++  +|+.|+|+++|++||+++|++|++..-.++
T Consensus        18 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~   76 (106)
T 3m62_B           18 LEPSNTILETKTKLAQS-ISCEESQIKLIY--SGKVLQDSKTVSECGLKDGDQVVFMVSQKK   76 (106)
T ss_dssp             CCTTSBHHHHHHHHHHT-TTSCGGGCEEEE--TTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred             ECCCCcHHHHHHHHHHH-HCCChhhEEEEE--CCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence            57899999999999999 899999999999  899999999999999999999998655443

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.36  E-value=3.3e-13  Score=105.50  Aligned_cols=53  Identities=21%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCC-------CCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLK-------NGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~-------~~~tl~v   56 (233)
                      |++++||++||++|+++ +|+|+++|||++  +||+|+|+++|++||++       +++||++
T Consensus        18 v~~sdTV~~lK~kI~~~-egIP~~qQrLi~--~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L   77 (118)
T 2fnj_B           18 AKESSTVFELKRIVEGI-LKRPPEEQRLYK--DDQLLDDGKTLGECGFTSQTARPQAPATVGL   77 (118)
T ss_dssp             EETTSBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBHHHHTCCTTTSBTTBCEEEEE
T ss_pred             eCCcChHHHHHHHHHHH-hCCCHHHeEEEE--CCeECCCCCCHHHcCcccccccCCCCCEEEE
Confidence            46889999999999999 899999999999  89999999999999999       7999875

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.36  E-value=3.2e-13  Score=96.94  Aligned_cols=53  Identities=17%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ +|+|+++|||+|  +|+.|+|++||++||+++|++|++
T Consensus        20 v~~~~tv~~lk~~i~~~-~gi~~~~qrL~~--~G~~L~d~~tl~~~~i~~~~~i~l   72 (79)
T 2uyz_B           20 VKMTTHLKKLKESYCQR-QGVPMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEV   72 (79)
T ss_dssp             EETTSCTHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCHHHHTCCTTEEEEE
T ss_pred             ECCCChHHHHHHHHHHH-HCCCcccEEEEE--CCEEeCCCCCHHHcCCCCCCEEEE
Confidence            45789999999999999 899999999999  899999999999999999999876

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.36  E-value=4.4e-13  Score=98.23  Aligned_cols=53  Identities=17%  Similarity=0.481  Sum_probs=49.6

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+ +|+|||+.
T Consensus        34 v~~~~tV~~lK~~i~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~~i-~g~~i~lv   86 (88)
T 4eew_A           34 VGAQMNVKEFKEHIAAS-VSIPSEKQRLIY--QGRVLQDDKKLQEYNV-GGKVIHLV   86 (88)
T ss_dssp             EETTCBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBGGGGTC-TTEEEEEE
T ss_pred             ECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCEECCCCCcHHHcCC-CCcEEEEE
Confidence            46789999999999999 799999999999  9999999999999999 89999874

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.36  E-value=4.6e-13  Score=101.57  Aligned_cols=54  Identities=19%  Similarity=0.227  Sum_probs=49.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCc-CceeEEEcCCCcccCCchhhhhc--CCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYP-DRQAVRLEIKGKILKDSDDIKSL--GLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~-~rQrL~~~~~Gk~L~d~ktL~~y--gv~~~~tl~v   56 (233)
                      |++++||.+||++|+++.+|.+| ++|||+|  +||+|+|+++|++|  |+++|+||++
T Consensus        42 v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy--~Gk~L~D~~tL~~y~~~I~~~~tihL   98 (99)
T 2kdb_A           42 CFLNWTVGKLKTHLSNVYPSKPLTKDQRLVY--SGRLLPDHLQLKDILRKQDEYHMVHL   98 (99)
T ss_dssp             ECTTSBHHHHHHHHHHHSTTCCCTTTCCEEE--TTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred             cCCCCHHHHHHHHHHHHhcCCCChhhEEEEE--CCEECCCCCCHHHHhcCCCCCCEEEe
Confidence            47899999999999997567665 9999999  99999999999999  9999999987

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.35  E-value=6.6e-13  Score=95.94  Aligned_cols=53  Identities=23%  Similarity=0.443  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.|||++|+++ .++|+++|||++  +|+.|+|+++|++||++++++|++
T Consensus        20 v~~~~tV~~lK~~i~~~-~~i~~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~l~l   72 (85)
T 3mtn_B           20 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKWSTLFL   72 (85)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             ECCCCCHHHHHHHHHHH-HCcChHHEEEEE--CCEECCCCCCHHHcCCCCCCEEEE
Confidence            46889999999999999 799999999999  899999999999999999999876

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.35  E-value=6.3e-13  Score=100.75  Aligned_cols=56  Identities=23%  Similarity=0.376  Sum_probs=51.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCc-hhhhhcCCCCCceEEEecC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~-ktL~~ygv~~~~tl~vkdl   59 (233)
                      |++++||+|||++|+++ .|+++++|||++  +|+.|+|+ ++|++||+++|++|++.+-
T Consensus        28 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~gk~L~D~~~tL~~ygI~~g~~l~l~~~   84 (102)
T 1v5o_A           28 VNPDFELSNFRVLCELE-SGVPAEEAQIVY--MEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             ECTTCBHHHHHHHHHHH-TCCCGGGBCEEE--TTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             cCCCCCHHHHHHHHHHH-HCcChHHeEEEE--CCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence            46789999999999999 899999999999  89999887 6999999999999998653

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.35  E-value=7.9e-13  Score=99.32  Aligned_cols=53  Identities=21%  Similarity=0.430  Sum_probs=50.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ .++|+++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        39 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~~i~~g~~i~l   91 (98)
T 4hcn_B           39 VESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL   91 (98)
T ss_dssp             CCTTCBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCTTCBSGGGTCCTTEEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-hCCChhHEEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence            57899999999999999 799999999999  899999999999999999999886

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=5.6e-13  Score=103.83  Aligned_cols=53  Identities=21%  Similarity=0.304  Sum_probs=50.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +++++||.|||++++++ .++|+++|||+|  +||.|+|++||++||+++|.|||+
T Consensus        33 v~~d~TV~dLKe~ls~~-~~iP~e~qrLIy--~GKiLKD~eTL~~~gIk~g~TIhL   85 (118)
T 2daf_A           33 FKVDTILKYLKDHFSHL-LGIPHSVLQIRY--SGKILKNNETLVQHGVKPQEIVQV   85 (118)
T ss_dssp             ECSSSCSHHHHHHHHHH-HTCCTTTEEEEE--TTEEECSSCCHHHHSCCSSCEEEE
T ss_pred             eCCCCcHHHHHHHHHhh-hCCChHHEEEEE--CCeEcCCcchHHHcCCCCCCEEEE
Confidence            46899999999999999 799999999999  899999999999999999999987

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.34  E-value=9.3e-13  Score=99.76  Aligned_cols=56  Identities=29%  Similarity=0.404  Sum_probs=52.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++..-
T Consensus        41 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~gI~~g~~I~l~~~   96 (101)
T 2klc_A           41 VPENSSVQQFKEEISKR-FKSHTDQLVLIF--AGKILKDQDTLSQHGIHDGLTVHLVIK   96 (101)
T ss_dssp             ECSCCCHHHHHHHHHHH-HTCCGGGEEEEE--TTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred             ECCCCCHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence            46889999999999999 799999999999  899999999999999999999987553

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.34  E-value=1.1e-12  Score=97.39  Aligned_cols=53  Identities=21%  Similarity=0.419  Sum_probs=50.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ .++++++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        18 v~~~~TV~~LK~~i~~~-~gip~~~qrL~~--~G~~L~d~~tL~~~~i~~~~~i~l   70 (96)
T 3k9o_B           18 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL   70 (96)
T ss_dssp             CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             ECCCCCHHHHHHHHHhh-hCCChhHEEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence            57899999999999999 799999999999  899999999999999999999876

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.33  E-value=7.4e-13  Score=100.21  Aligned_cols=54  Identities=30%  Similarity=0.550  Sum_probs=50.6

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .++|+++|||++  +|+.|+|+++|++||+++|++|++.
T Consensus        38 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~ygI~~gstI~l~   91 (100)
T 1yqb_A           38 VTDTCTIQQLKEEISQR-FKAHPDQLVLIF--AGKILKDPDSLAQCGVRDGLTVHLV   91 (100)
T ss_dssp             EETTCBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBHHHHTCCTTCEEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCcCcHHHCCCCCCCEEEEE
Confidence            46789999999999999 799999999999  8999999999999999999999874

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.33  E-value=1.2e-12  Score=96.22  Aligned_cols=54  Identities=17%  Similarity=0.489  Sum_probs=49.9

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD   58 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd   58 (233)
                      |++++||.+||++|+++ .++++++|||++  +|+.|+|+++|++||+ +|++|++..
T Consensus        22 v~~~~tV~~lK~~i~~~-~gip~~~qrLi~--~Gk~L~d~~tL~~~~i-~g~~i~l~~   75 (90)
T 4dwf_A           22 VGAQMNVKEFKEHIAAS-VSIPSEKQRLIY--QGRVLQDDKKLQEYNV-GGKVIHLVE   75 (90)
T ss_dssp             EETTCBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBGGGGTC-TTEEEEEEE
T ss_pred             ECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCeECCCCCCHHHcCC-CCcEEEEEe
Confidence            45789999999999999 799999999999  9999999999999999 899998744

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.32  E-value=6.9e-13  Score=98.92  Aligned_cols=54  Identities=28%  Similarity=0.453  Sum_probs=50.6

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .++++++|||++  +|+.|+|+++|++||+++|++|++.
T Consensus        33 v~~~~TV~~LK~~I~~~-~gip~~~qrL~~--~Gk~L~D~~tL~~~gi~~g~~i~l~   86 (96)
T 1wx8_A           33 LAENSNVRRFKKQISKY-LHCNADRLVLIF--TGKILRDQDILSQRGILDGSTVHVV   86 (96)
T ss_dssp             EETTCCHHHHHHHHHHH-TCSCTTTBCCEE--TTEECCTTSCHHHHTCCTTEEEECC
T ss_pred             ECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCEECCCcCCHHHCCCCCCCEEEEE
Confidence            35789999999999999 899999999999  8999999999999999999999863

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.32  E-value=2.1e-12  Score=98.51  Aligned_cols=58  Identities=24%  Similarity=0.289  Sum_probs=53.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      |++++||.+||++|+++ .|+++++|||++  +|+.|+|+++|++||+++|++|++..-.+
T Consensus        40 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~   97 (106)
T 1ttn_A           40 VRSTDTVFHMKRRLHAA-EGVEPGSQRWFF--SGRPLTDKMKFEELKIPKDYVVQVIVSQP   97 (106)
T ss_dssp             ECTTSHHHHHHHHHHHT-TCCCSTTCEEEE--TTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred             eCCCCcHHHHHHHHHHH-HCcCcccEEEEE--CCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence            46789999999999999 899999999999  89999999999999999999999866544

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.31  E-value=2.2e-12  Score=99.09  Aligned_cols=60  Identities=18%  Similarity=0.288  Sum_probs=53.4

Q ss_pred             CCC-cccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCCcc
Q psy9586           1 VSG-SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGPQI   63 (233)
Q Consensus         1 v~~-~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~qi   63 (233)
                      |++ ++||.+||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++  +-.|+.+
T Consensus        47 v~~l~~TV~~LK~~I~~~-~gip~~~QrL~~--~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GGk~  109 (111)
T 1we6_A           47 VQSLSENVGSLKEKIAGE-IQIPANKQKLSG--KAGFLKDNMSLAHYNVGAGEILTLSLRERSGPS  109 (111)
T ss_dssp             ESCSSSBHHHHHHHHHHH-TTCCTTTSEEEC--SSSBCCTTSBTTTTTCSSSCEEEEECSSCCSSC
T ss_pred             ecCCCCcHHHHHHHHHHH-HCCCHHHeEEEE--CCEECCCCCcHHHCCCCCCCEEEEEEEcCCCCC
Confidence            356 89999999999999 899999999999  899999999999999999999876  5556543

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=98.98  E-value=1.8e-13  Score=97.26  Aligned_cols=53  Identities=23%  Similarity=0.313  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        17 v~~~~tV~~lK~~i~~~-~gi~~~~qrL~~--~gk~L~d~~tL~~~~i~~g~~i~l   69 (76)
T 3b1l_X           17 VDSDTSILQLKEVVAKQ-QGVPADQLRVIF--AGKELPNHLTVQNCDLEQQSIVHI   69 (76)
Confidence            46789999999999999 899999999999  899999999999999999999986

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.30  E-value=2.3e-12  Score=99.74  Aligned_cols=58  Identities=21%  Similarity=0.383  Sum_probs=52.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++  +..|+
T Consensus        26 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG   85 (114)
T 2kdi_A           26 VESSDTIDNVKSKIQDK-EGIPPDQQRLIW--AGKQLEDGRTLSDYNIQRESTLHLVLRLRGG   85 (114)
T ss_dssp             CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTCBTTTTTCCSSCEEEEEECCCSS
T ss_pred             ECCCCcHHHHHHHHHHH-HCcChHHEEEEE--CCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence            57899999999999999 899999999999  899999999999999999999876  44444

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.29  E-value=1.2e-12  Score=98.47  Aligned_cols=53  Identities=28%  Similarity=0.381  Sum_probs=49.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.|||++|+++ +|++++||||++  +|+.|+|+ +|++||+++|++|++-
T Consensus        24 v~~~~TV~~lK~~I~~~-tgip~~~QkLi~--~Gk~L~D~-tL~~~~I~~g~~i~l~   76 (96)
T 1wgg_A           24 LNTDEPPMVFKAQLFAL-TGVQPARQKVMV--KGGTLKDD-DWGNIKMKNGMTVLMM   76 (96)
T ss_dssp             EESSSCHHHHHHHHHHH-TCCCTTTSCCEE--TTEECCSS-CCCSCCCCSSCEEECC
T ss_pred             ECCCCcHHHHHHHHHHH-HCcCHHHeEEEE--CCcCCCCC-CHHHCCCCCCCEEEEE
Confidence            36789999999999999 999999999999  89999999 9999999999999873

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.28  E-value=5.9e-12  Score=96.20  Aligned_cols=55  Identities=16%  Similarity=0.236  Sum_probs=50.5

Q ss_pred             CCc-ccHHHHHHHHHHHhC--CCCcCc-eeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           2 SGS-FTVKDIKKEVHKAKS--QLYPDR-QAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         2 ~~~-~TV~~LK~~i~~~~~--~i~~~r-QrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      +++ +||.+||++|+++ .  ++++++ |||++  +|+.|+|+++|++||+++|++|++..-
T Consensus        41 ~~~~~TV~~LK~~i~~~-~~~gip~~~~qrLi~--~Gk~L~D~~tL~~y~i~~g~~i~lv~~   99 (107)
T 1x1m_A           41 SLGGYSISFLKQLIAGK-LQESVPDPELIDLIY--CGRKLKDDQTLDFYGIQPGSTVHVLRK   99 (107)
T ss_dssp             CCCCCBHHHHHHHHHHH-CTTTCCCSSSEEEEE--TTEECCTTCBHHHHTCCTTCEEEEEES
T ss_pred             CcccCCHHHHHHHHHHH-hccCCChhhcEEEEE--CCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence            444 9999999999999 7  999999 99999  899999999999999999999998543

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.28  E-value=3.3e-12  Score=98.71  Aligned_cols=59  Identities=20%  Similarity=0.375  Sum_probs=53.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCCc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGPQ   62 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~q   62 (233)
                      |++++||.+||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++  +-.|+.
T Consensus        52 v~~~~TV~~LK~~I~~~-~gip~~~QrL~~--~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk  112 (115)
T 1we7_A           52 LPLTDQVSVIKVKIHEA-TGMPAGKQKLQY--EGIFIKDSNSLAYYNMASGAVIHLALKERSGP  112 (115)
T ss_dssp             ECSCSBTHHHHHHHHHH-SSCCTTTEEEEE--TTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred             ECCCCCHHHHHHHHHHH-HCCChHHEEEEE--CCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence            46789999999999999 899999999999  899999999999999999999875  455553

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.28  E-value=3.1e-12  Score=100.70  Aligned_cols=54  Identities=28%  Similarity=0.422  Sum_probs=50.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.+||++|+++ .++++++|||+|  +|+.|+|+++|++||+++|++|++.
T Consensus        48 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~dygI~~gstI~lv  101 (125)
T 1j8c_A           48 VPENSSVQQFKEAISKR-FKSQTDQLVLIF--AGKILKDQDTLIQHGIHDGLTVHLV  101 (125)
T ss_dssp             ECTTCCHHHHHHHHHHH-HCSCSSSEEEEE--TTEEESTTSCGGGTTCSSSEEEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-HCcCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            46789999999999999 799999999999  8999999999999999999999874

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.28  E-value=2e-12  Score=97.04  Aligned_cols=53  Identities=17%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ .|+|+++|||+|  +|+.|+|++||++||+++|++|++
T Consensus        38 v~~~~tv~~lK~~i~~~-~gip~~~qrLif--~Gk~L~d~~tl~dy~i~~g~~I~l   90 (97)
T 1wyw_B           38 VKMTTHLKKLKESYCQR-QGVPMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEV   90 (97)
T ss_dssp             EETTSCTHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCHHHHTCCTTCEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-HCCChhhEEEEE--CCeEcCCCCCHHHCCCCCCCEEEE
Confidence            45789999999999999 899999999999  899999999999999999999876

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.27  E-value=5.7e-12  Score=93.29  Aligned_cols=55  Identities=24%  Similarity=0.334  Sum_probs=49.9

Q ss_pred             cccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCC-chhhhhcCCCCCceEEEecCCC
Q psy9586           4 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD-SDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         4 ~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d-~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      ++||.|||++|+++ .|+|+++|||++  +|+.|+| +++|++||+++|++|++.+-.+
T Consensus        31 ~~TV~~LK~~i~~~-~gip~~~qrL~~--~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~   86 (92)
T 1wxv_A           31 EPVVQDLAQVVEEV-IGVPQSFQKLIF--KGKSLKEMETPLSALGIQDGCRVMLIGKKN   86 (92)
T ss_dssp             SCBHHHHHHHHHHH-TCCCTTTCEEEE--TTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred             cCcHHHHHHHHHHH-HCcCHHHEEEEE--CCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence            59999999999999 899999999999  8999988 5689999999999999866443

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.27  E-value=2.6e-12  Score=97.79  Aligned_cols=54  Identities=30%  Similarity=0.550  Sum_probs=50.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.+||++|+++ .++++++|||++  +|+.|+|+++|++||+++|++|++.
T Consensus        33 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~gi~~g~~i~l~   86 (106)
T 1wx7_A           33 VTDTCTIQQLKEEISQR-FKAHPDQLVLIF--AGKILKDPDSLAQCGVRDGLTVHLV   86 (106)
T ss_dssp             EETTCCHHHHHHHHHHH-HTCCTTTEEEEE--TTEECCTTSCHHHHTCCTTEEEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-HCcChhhEEEEE--CCEECCCcCcHHHcCCCCCCEEEEE
Confidence            35789999999999999 799999999999  8999999999999999999999874

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.24  E-value=5.8e-12  Score=96.89  Aligned_cols=53  Identities=21%  Similarity=0.419  Sum_probs=50.2

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ .++|+++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        52 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~~gI~~gs~I~l  104 (111)
T 3vdz_A           52 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL  104 (111)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTTTTTCCTTCEEEE
T ss_pred             eCCCCCHHHHHHHHHHH-hCCChHHEEEEE--CCEECCCCCcHHHCCCCCCCEEEE
Confidence            46889999999999999 799999999999  899999999999999999999876

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.23  E-value=3.2e-12  Score=95.77  Aligned_cols=55  Identities=22%  Similarity=0.373  Sum_probs=49.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      |++++||+|||++|+++ .|+|++||||++  +|++|+| ++|++||+++|++|++.+-
T Consensus        33 v~~~~TV~~LK~~I~~~-tgip~~~QrL~~--~Gk~Ldd-~tL~~~~i~~g~~i~lv~~   87 (95)
T 1v86_A           33 VPLDSTGSELKQKIHSI-TGLPPAMQKVMY--KGLVPED-KTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             ECTTSBHHHHHHHHHHH-HCSCSTTCCCBS--SSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred             ECCCCcHHHHHHHHHHH-HCcCHHHeEEEE--CCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence            46889999999999999 899999999999  8999954 5999999999999998653

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.23  E-value=9.3e-12  Score=102.69  Aligned_cols=58  Identities=21%  Similarity=0.402  Sum_probs=52.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      |++++||.+||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++  +-.|+
T Consensus        17 v~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG   76 (169)
T 3l0w_B           17 VESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG   76 (169)
T ss_dssp             CCTTCBHHHHHHHHHHH-HCCCTTTEEEEE--TTEECCTTSBGGGGTCCTTCEEEEEECCCC-
T ss_pred             eCCCCCHHHHHHHHHHH-HCcCHHHEEEEE--CCccccCcCcHHHcCCCCCCEEEEEEEeccc
Confidence            57899999999999999 899999999999  999999999999999999999886  44444

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.23  E-value=6.6e-12  Score=99.16  Aligned_cols=53  Identities=17%  Similarity=0.199  Sum_probs=47.0

Q ss_pred             CCCcccHHHHHHHHH-----HHhCCCCc--CceeEEEcCCCcccCCchhhhhcCCCCC------ceEEE
Q psy9586           1 VSGSFTVKDIKKEVH-----KAKSQLYP--DRQAVRLEIKGKILKDSDDIKSLGLKNG------DMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~-----~~~~~i~~--~rQrL~~~~~Gk~L~d~ktL~~ygv~~~------~tl~v   56 (233)
                      +++++||++||++|+     ++ +++|+  ++|||+|  .||+|+|++||+||++++|      +|+|+
T Consensus        34 v~psdTV~~lK~kI~~~~p~dk-egiP~~~~qQrLIy--~GK~LeD~~TLsdy~I~~~~~~~~v~tmhl   99 (126)
T 1se9_A           34 FPDATTVSALKETVISEWPREK-ENGPKTVKEVKLIS--AGKVLENSKTVKDYRSPVSNLAGAVTTMHV   99 (126)
T ss_dssp             ECTTCBHHHHHHHHHHHSCTTC-SSSCCSGGGEEEEE--TTEECCTTSBGGGGSCCTTSCTTCCEEEEE
T ss_pred             cCccCHHHHHHHHHHhhccccc-ccCCCChhhEEEEE--CCeECcCCCcHHHcCCCcCCccCCcEEEEE
Confidence            468999999999994     44 78886  8999999  9999999999999999998      67775

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.23  E-value=7.9e-12  Score=96.00  Aligned_cols=53  Identities=21%  Similarity=0.419  Sum_probs=50.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ .++++++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        52 v~~~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~gI~~gs~I~l  104 (111)
T 2ojr_A           52 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL  104 (111)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCTTTEEEEE--TTEECCSSCBTTTTTCCTTCEEEE
T ss_pred             eCCCCCHHHHHHHHHHH-HCcCcccEEEEE--CCEECCCCCcHHHcCCCCCCEEEE
Confidence            46789999999999999 799999999999  899999999999999999999986

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.23  E-value=1.1e-11  Score=90.85  Aligned_cols=60  Identities=13%  Similarity=0.313  Sum_probs=52.6

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC---CchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK---DSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~---d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      +++++||.|||++|+++ .|++++||||++.-.||+|+   |+++|++||+++|++|++++-..
T Consensus        17 l~~~~Tv~~Lk~~I~~~-~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~~   79 (86)
T 2kzr_A           17 LSSRTRLRELQGQIAAI-TGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQT   79 (86)
T ss_dssp             CCTTCBHHHHHHHHHHH-TCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCSC
T ss_pred             cCCCCCHHHHHHHHHHH-hCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCCC
Confidence            46889999999999999 89999999999853468874   67899999999999999988754

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.23  E-value=7.7e-12  Score=101.00  Aligned_cols=53  Identities=28%  Similarity=0.311  Sum_probs=50.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ +|+|+++|||++  +|+.|+|+++|++||+++|+||++
T Consensus        98 v~~~~tV~~lK~~i~~~-~gip~~~q~L~~--~G~~L~d~~tL~~y~i~~g~~l~l  150 (159)
T 3rt3_B           98 VRLTQTVAHLKQQVSGL-EGVQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFM  150 (159)
T ss_dssp             ECTTSBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             eCCCCCHHHHHHHHHHH-HCCCHHHEEEEE--CCeecCCCCCHHHcCCCCCCEEEE
Confidence            46899999999999999 899999999999  899999999999999999999986

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=5.9e-12  Score=95.70  Aligned_cols=58  Identities=24%  Similarity=0.343  Sum_probs=50.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLG   60 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg   60 (233)
                      |++++||++||++|+++ +|+||+||||.+-+.|+ |+|+++|++|++++|+||++  .|+.
T Consensus        25 v~~~~TV~~LK~~I~~~-tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~   84 (100)
T 2dzm_A           25 LEDTCTVGEIKQILENE-LQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP   84 (100)
T ss_dssp             EETTSBHHHHHHHHHHH-HCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred             ECCCCcHHHHHHHHHHH-HCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence            46789999999999999 89999999998544566 99999999999999999986  4544

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.21  E-value=1.9e-12  Score=99.21  Aligned_cols=53  Identities=28%  Similarity=0.413  Sum_probs=47.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcC---------------ceeEEEcCCCcccC-CchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPD---------------RQAVRLEIKGKILK-DSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~---------------rQrL~~~~~Gk~L~-d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||+|||++|+++ .++|++               +|||++  +|++|+ |+++|+|||+++|++|++
T Consensus        24 V~~~~TV~dLK~~I~~~-~~i~~~~q~g~~~isw~~~w~q~~Li~--~Gk~L~dD~~tL~dygI~~g~~l~l   92 (105)
T 1v2y_A           24 VVQNATVLDLKKAIQRY-VQLKQEREGGVQHISWSYVWRTYHLTS--AGEKLTEDRKKLRDYGIRNRDEVSF   92 (105)
T ss_dssp             ECTTCBHHHHHHHHHHH-HHHHHHHTTCCCCCCHHHHHTTEEEES--SSCEECCSSSBHHHHTCCSSEEEEE
T ss_pred             ECCCChHHHHHHHHHHH-hCCCcccccCcceeeeeecceeEEEEe--CCcCccCCcCCHHHcCCCCCCEEEE
Confidence            57899999999999999 788884               569999  899996 679999999999999986

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.18  E-value=2e-11  Score=95.09  Aligned_cols=53  Identities=21%  Similarity=0.306  Sum_probs=46.8

Q ss_pred             CCCcccHHHHHHHHHH------HhCCC--CcCceeEEEcCCCcccCCchhhhhcCCCCC--ceEEE
Q psy9586           1 VSGSFTVKDIKKEVHK------AKSQL--YPDRQAVRLEIKGKILKDSDDIKSLGLKNG--DMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~------~~~~i--~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~--~tl~v   56 (233)
                      |++++||++||++|++      + +++  ++++|||+|  .||+|+|+++|++|+++.+  +|||+
T Consensus        33 v~~s~TV~~lK~kI~~~~p~dwk-e~~p~p~~qqrLIy--~GK~LeD~~TL~~y~I~~~~~~tlhL   95 (116)
T 1wgh_A           33 FSPNDSASDIAKHVYDNWPMDWE-EEQVSSPNILRLIY--QGRFLHGNVTLGALKLPFGKTTVMHL   95 (116)
T ss_dssp             ECTTCBHHHHHHHHHHSSSCCSS-CCCCCCTTTEEEEE--TTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred             ECCcCHHHHHHHHHHHhcccccc-cCCCCChHHEEEEE--CCcCCCCCCcHHHcCCCCCCceEEEE
Confidence            4789999999999998      5 675  699999999  9999999999999999766  56775

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.17  E-value=1.9e-11  Score=90.89  Aligned_cols=55  Identities=18%  Similarity=0.301  Sum_probs=49.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCc-hhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDS-DDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~-ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      |++++||++||++|+++ .   +++|||+|  +|+.|+|+ ++|++||+++|++||+..-.|
T Consensus        24 v~~~~TV~~LK~~i~~~-~---~~~qrLi~--~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~   79 (95)
T 1wia_A           24 ARPEDTVGTLKSKYFPG-Q---ESQMKLIY--QGRLLQDPARTLSSLNITNNCVIHCHRSPP   79 (95)
T ss_dssp             ECSSSBHHHHHHHHSSS-T---TTTCEEEE--TTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred             ECCCCcHHHHHHHHHhh-C---cCcEEEEE--CCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence            46889999999999987 4   99999999  89999998 999999999999999866544

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.16  E-value=3.2e-11  Score=97.32  Aligned_cols=56  Identities=23%  Similarity=0.325  Sum_probs=50.9

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEE-EcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVR-LEIKGKILKDSDDIKSLGLKNGDMVFIKD   58 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~-~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd   58 (233)
                      |++++||++||++|+++ .|+|+++|||+ ++ +|+.|+|+++|++||+++|++|++.-
T Consensus        19 v~~~~tV~~lK~~I~~~-~gip~~~QrL~~~~-~g~~L~d~~tL~~y~i~~~~~l~l~~   75 (159)
T 3rt3_B           19 LSSSMSVSELKAQITQK-IGVHAFQQRLAVHP-SGVALQDRVPLASQGLGPGSTVLLVV   75 (159)
T ss_dssp             CCTTCCHHHHHHHHHHH-HCCCGGGEEEEEET-TCCBCCTTSCGGGGTCCTTCEEEEEE
T ss_pred             eCCCCcHHHHHHHHHHH-hCCCHHHEEEEEcC-CCCCCCCCCCHHHcCCCCCCEEEEEc
Confidence            57899999999999999 89999999999 72 48999999999999999999998743

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.16  E-value=2.2e-11  Score=102.42  Aligned_cols=58  Identities=21%  Similarity=0.391  Sum_probs=52.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      |++++||++||++|+++ +++|+++|||++  +|+.|+|+++|++||+++|+||++  +-.|+
T Consensus       122 V~~s~TV~~LK~kI~~~-~gIp~~~QrLi~--~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG  181 (189)
T 3q3f_A          122 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLRLRGG  181 (189)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGCCEEE--TTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred             eCCCCcHHHHHHHHHhc-cCCCHHHEEEEE--CCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence            47899999999999999 899999999999  899999999999999999999986  44444

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.15  E-value=1.8e-11  Score=93.56  Aligned_cols=58  Identities=24%  Similarity=0.307  Sum_probs=51.2

Q ss_pred             CC-CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCc-----------c----cCCchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VS-GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-----------I----LKDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~-~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk-----------~----L~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      |+ +++||.|||++|+++ .++|+++|||++  .|+           .    ++|+++|++||+++|++||+.+...
T Consensus        23 v~~~~~Tv~~LK~kI~~~-~gip~~~QrL~~--~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~~~   96 (107)
T 1wf9_A           23 VDGPHITVSQLKTLIQDQ-LQIPIHNQTLST--NRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYEGE   96 (107)
T ss_dssp             ECCTTSBHHHHHHHHHHH-SCCCTTTCCCBS--SGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCSSC
T ss_pred             ECCCCCcHHHHHHHHHHH-hCcCcccCEEEE--CCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeCCC
Confidence            35 889999999999999 899999999998  455           4    5888999999999999999988754

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.15  E-value=3e-11  Score=95.91  Aligned_cols=53  Identities=21%  Similarity=0.419  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      +++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++
T Consensus        93 v~~~~tv~~lK~~i~~~-~gi~~~~qrL~~--~g~~L~d~~tL~~~~i~~~~~i~l  145 (152)
T 3b08_A           93 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL  145 (152)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             eCCCCcHHHHHHHHHHH-hCcChhhEEEEE--CCEECCCCCCHHHcCCCCCCEEEE
Confidence            46789999999999999 799999999999  899999999999999999999986

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.15  E-value=2.3e-11  Score=99.67  Aligned_cols=53  Identities=21%  Similarity=0.419  Sum_probs=50.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ +|+|+++|||++  +|+.|+|+++|++||+++|+||++
T Consensus       113 v~~~~tV~~lK~~I~~~-~gip~~~q~L~~--~g~~L~D~~tL~~y~i~~g~tl~l  165 (172)
T 3u30_A          113 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL  165 (172)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGCCEEE--TTEECCTTSBSGGGTCCTTCEEEE
T ss_pred             ecCCCCHHHHHHHHHHH-hCCCceeEEEEE--CCccCCCCCcHHHhCCCCCCEEEE
Confidence            46789999999999999 899999999999  899999999999999999999987

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.15  E-value=3e-11  Score=99.02  Aligned_cols=54  Identities=20%  Similarity=0.401  Sum_probs=50.9

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.+||++|+++ .|+|+++|||.+  +|+.|+|+++|++||+++|+||++.
T Consensus        37 v~~~~tV~~lK~~I~~~-~gip~~~QrL~~--~g~~L~d~~tL~~~~i~~~~~l~l~   90 (172)
T 3u30_A           37 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLV   90 (172)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTCBTGGGTCCTTCEEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-HCcChHHEEEEE--CCccccccCCHhHcCCcccceeeee
Confidence            47899999999999999 899999999999  8999999999999999999999864

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.14  E-value=4.4e-11  Score=94.99  Aligned_cols=56  Identities=20%  Similarity=0.350  Sum_probs=52.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      |++++||+|||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|++|++..-
T Consensus        17 v~~~~tv~~lK~~i~~~-~gip~~~q~L~~--~g~~L~d~~tL~~~~i~~~~~l~l~~~   72 (152)
T 3b08_A           17 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHLVLR   72 (152)
T ss_dssp             CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred             ECCCCCHHHHHHHHHHH-HCcChHHeEEEE--CCeECcCcccHHHhccCCCCeeEEEee
Confidence            57899999999999999 799999999999  899999999999999999999987543

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.14  E-value=2.2e-11  Score=96.05  Aligned_cols=53  Identities=21%  Similarity=0.309  Sum_probs=46.9

Q ss_pred             CCCcccHHHHHHHHHH------HhCCC--CcCceeEEEcCCCcccCCchhhhhcCCCCCc--eEEE
Q psy9586           1 VSGSFTVKDIKKEVHK------AKSQL--YPDRQAVRLEIKGKILKDSDDIKSLGLKNGD--MVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~------~~~~i--~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~--tl~v   56 (233)
                      |++++||++||++|++      + +++  ++++|||+|  .||+|+|+++|++|++++|+  |+++
T Consensus        34 v~~s~TV~~lK~~I~~~~p~dwk-e~ip~~~~~qrLIy--~GK~LeD~~TL~~y~I~~~~~~tlhl   96 (125)
T 2gow_A           34 FSPNDSASDIAKHVYDNWPMDWE-EEQVSSPNILRLIY--QGRFLHGNVTLGALKLPFGKTTVMHL   96 (125)
T ss_dssp             ECTTSBHHHHHHHHHSSCCCSCC-CCTTCCGGGEEEES--SSSEEESSCBTGGGCCCTTSEEEEEE
T ss_pred             eCCccHHHHHHHHHHHHCCcccc-cCCCCChHHEEEEE--CCcCCCCCCcHHHcCCCCCCceEEEE
Confidence            4789999999999998      5 788  489999999  99999999999999999765  5654

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.13  E-value=5e-12  Score=102.86  Aligned_cols=53  Identities=21%  Similarity=0.430  Sum_probs=0.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||+|||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|+||++
T Consensus        17 V~~~~TV~~LK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~dygI~~gstL~L   69 (152)
T 3u5c_f           17 VESSDTIDNVKSKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL   69 (152)
T ss_dssp             --------------------------------------------------------
T ss_pred             ECCCCCHHHHHHHHHHH-hCCCHHHEEEEE--CCEEccccCcHHHcCCCCCCEEEE
Confidence            57899999999999999 899999999999  899999999999999999999875

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=98.92  E-value=2.9e-10  Score=102.61  Aligned_cols=56  Identities=27%  Similarity=0.360  Sum_probs=48.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEc-CCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-IKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~-~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.+||++|+++ +|+||+||||++. -+|++|+|+.+|++||+++|++|++-
T Consensus        21 v~~~~Tv~~lK~~I~~~-tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~   77 (320)
T 3shq_A           21 LTDQDTVEVLRHEIFRK-TQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMV   77 (320)
T ss_dssp             EETTSBHHHHHHHHHHH-HCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-HCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEE
Confidence            46889999999999999 8999999999921 18999999999999999999999874

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=98.91  E-value=1.5e-09  Score=81.18  Aligned_cols=61  Identities=21%  Similarity=0.334  Sum_probs=51.5

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCC--C--cc-c-CCchhhhhcCCCCCceEEEecCCCcc
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIK--G--KI-L-KDSDDIKSLGLKNGDMVFIKDLGPQI   63 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~--G--k~-L-~d~ktL~~ygv~~~~tl~vkdlg~qi   63 (233)
                      +++.||.+||++|++. .|+|+++|||.+.++  +  .. | +|+++|.+||+++|++|++.|..|.-
T Consensus        30 ~~~~TV~~LK~~i~~~-~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~p~s   96 (97)
T 1wjn_A           30 PDSMTVQKVKGLLSRL-LKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGPSS   96 (97)
T ss_dssp             ETTSBHHHHHHHHHTT-TTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSSCC
T ss_pred             CCCCCHHHHHHHHHHH-HCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecCCCC
Confidence            4678999999999999 799999999998532  2  22 5 57789999999999999999987753

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=98.90  E-value=1.1e-09  Score=100.44  Aligned_cols=52  Identities=23%  Similarity=0.326  Sum_probs=48.2

Q ss_pred             CCCcccHHHHHHHHHHH--hCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceE
Q psy9586           1 VSGSFTVKDIKKEVHKA--KSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV   54 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~--~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl   54 (233)
                      |++++||.+||++|+++  .+|+++++|||+|  +||.|+|+++|++|||++|++|
T Consensus        24 V~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy--~GK~L~D~~tL~dygI~~gstI   77 (368)
T 1oqy_A           24 MEPDETVKVLKEKIEAEKGRDAFPVAGQKLIY--AGKILSDDVPIRDYRIDEKNFV   77 (368)
T ss_dssp             CCTTCBHHHHHHHHHHHTCSSSCCSTEEEEES--SSSEECSSSBTTTTCCCTTSCE
T ss_pred             eCCCChHHHHHHHHHHHhCcCCCChhheEEEE--CCeecCCcCCHHHcCCCCCCEE
Confidence            57889999999999994  2689999999999  8999999999999999999998

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=98.74  E-value=1e-09  Score=92.12  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=0.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCCcc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGPQI   63 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~qi   63 (233)
                      |++++||++||++|+++ +|+|+++|||+|  +|++|+|+++|+     +++||++  +-+|+..
T Consensus        17 V~~sdTV~~LK~kI~~k-eGIP~~qQRLIf--~GK~LeD~~TLs-----~~STLhLvlRLrGG~~   73 (189)
T 2xzm_9           17 LEQGTSVLDLKSQISQD-MGFEIDMMTLVN--NGFIAPNTELVT-----DDVTYYLSLKLLGGKK   73 (189)
T ss_dssp             ---------------------------------------------------------------CC
T ss_pred             ECCcChHHHHHHHHHHH-hCcChhHEEEEe--cCeECCCCCccc-----CCCEEEEEEecCCCcc
Confidence            57899999999999999 999999999999  899999999998     8888875  4445433

>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}

Probab=98.74  E-value=1.2e-08  Score=85.71  Aligned_cols=103  Identities=16%  Similarity=0.112  Sum_probs=71.3

Q ss_pred             hhHhhhhHHHHHHHHhc-CCCCCcccccccCCCCCCCCccceecccchhhHHHHHHHHHHhhcchhHHHH-HHHHHHHHH
Q psy9586         127 VFCQLGNLSIHLALRDL-RPPGTNVRRIPVATSNPFTSLFDYVSCPNYTYEFGSWLSFSLLTSCFPALLF-ASAGMYQMT  204 (233)
Q Consensus       127 ~~~~~~n~~~h~~L~~L-R~~~~~~~~ip~~~~~P~gglF~~VscPnY~~Eil~w~~f~l~~~~~~~~~f-~~~~~~~m~  204 (233)
                      ++|......++.+|.+- +..-+    ...++..-.+|+|+++.+|||++|++.|+|++++++++.++++ .+....-+.
T Consensus        86 l~G~~l~~~a~~~Lg~~f~~~~~----~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~~~~~~~~~~  161 (194)
T 4a2n_B           86 FLNIGLFTKIHKDLGNNWSAILE----IKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYF  161 (194)
T ss_dssp             HHHHHHHHHHHHHHGGGCCSSCC----EETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccCCC----CCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            47777888888888543 32111    1123344458999999999999999999999999998776553 222222334


Q ss_pred             HHHHHHhHHHHhhCCC----CCCCceeeecccC
Q psy9586         205 VWALGKHKNYKKEFPD----YPKQRKAIVPFVI  233 (233)
Q Consensus       205 ~~A~~~h~wY~~~F~~----yp~~RkaiIPfi~  233 (233)
                      .++..-+++.+++|++    |.++.+++||+|.
T Consensus       162 ~ri~~EE~~L~~~fG~~Y~~Y~~rv~r~iP~i~  194 (194)
T 4a2n_B          162 IRVPKEEELLIEEFGDEYIEYMGKTGRLFPKVV  194 (194)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHCBSSSCC--
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHhCCeeCceeC
Confidence            6777788888888863    6666679999974

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=98.71  E-value=9.3e-09  Score=76.96  Aligned_cols=58  Identities=14%  Similarity=0.264  Sum_probs=51.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      |.++++++.|+++++++ .|+++++|||+|  +|+.|++++|.+++++++|++|++  +-.|+
T Consensus        24 v~~~t~l~kl~~~y~~~-~gi~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~Idv~~~~~GG   83 (94)
T 2io1_B           24 IKRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDVFQQQTGG   83 (94)
T ss_dssp             EETTSCTHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred             ECCCCHHHHHHHHHHHH-hCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            35789999999999999 899999999999  899999999999999999999875  44444

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=98.68  E-value=1.7e-08  Score=71.61  Aligned_cols=54  Identities=13%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |.++++++.|+++++++ .|+++++|||+|  +|+.|++++|.+++++++|++|++.
T Consensus        18 v~~~t~l~kl~~~y~~~-~gi~~~~~rf~f--dG~~l~~~~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A           18 IKRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             ECTTSCTHHHHHHHHHH-HTCCTTTCEEEE--TTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred             ECCCChHHHHHHHHHHH-hCCCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEE
Confidence            45789999999999999 899999999999  8999999999999999999999863

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=98.64  E-value=3e-08  Score=71.71  Aligned_cols=54  Identities=20%  Similarity=0.260  Sum_probs=50.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |.+++++..|+++++++ .|+++++|||+|  +|+.|++++|.+++++++|++|++.
T Consensus        25 i~~~t~l~kl~~~y~~~-~gi~~~~~rf~f--dG~~l~~~~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A           25 LSPDSPLKVLMSHYEEA-MGLSGHKLSFFF--DGTKLSGKELPADLGLESGDLIEVW   78 (79)
T ss_dssp             ECTTSCHHHHHHHHHHH-HTCTTCCCEEEE--TTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred             ECCCChHHHHHHHHHHH-hCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEe
Confidence            35789999999999999 899999999999  8999999999999999999999873

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=98.59  E-value=4.8e-08  Score=72.71  Aligned_cols=53  Identities=13%  Similarity=0.251  Sum_probs=49.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |.+++++..|+++++++ .|+++++|||+|  +|+.|++++|.+++++++|++|.+
T Consensus        22 vk~~t~l~kl~~~y~~~-~gi~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~Idv   74 (91)
T 2io0_B           22 IKRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDV   74 (91)
T ss_dssp             EETTSCTHHHHHHHHHH-TTCCSTTEEEEE--TTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             ECCCChHHHHHHHHHHH-hCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence            35789999999999999 899999999999  899999999999999999999865

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=98.45  E-value=1.3e-07  Score=70.40  Aligned_cols=52  Identities=13%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      .+++++..|+++++++ .|+++++|||+|  +|+.|.+++|.+++++++|++|++
T Consensus        35 ~~~t~l~kl~~~y~~~-~gi~~~~~rf~f--dG~~l~~~~Tp~dl~medgD~Idv   86 (93)
T 2d07_B           35 KRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDV   86 (93)
T ss_dssp             ETTSCHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             ccCCHHHHHHHHHHHH-hCCCccceEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence            4688999999999999 899999999999  899999999999999999999876

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=98.40  E-value=1.9e-07  Score=71.11  Aligned_cols=53  Identities=13%  Similarity=0.251  Sum_probs=49.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |.+++++..|+++++++ .|+++++|||+|  +|+.|.+++|.+++++++|++|++
T Consensus        41 Vk~~t~l~kL~~~y~ek-~gi~~~~~rf~F--dG~~l~~~~Tp~dl~medgD~Idv   93 (104)
T 1wz0_A           41 IKRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDV   93 (104)
T ss_dssp             ECTTSCHHHHHHHHHHH-HTCCTTTSCEES--SSSBCCTTSCTTTTTCCTTEEEEE
T ss_pred             EcCCChHHHHHHHHHHH-hCCCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence            45789999999999999 899999999999  899999999999999999999876

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=98.40  E-value=1.8e-07  Score=72.03  Aligned_cols=53  Identities=11%  Similarity=0.255  Sum_probs=49.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |.+++++..|+++++++ .|+++++|||+|  +|+.|++++|.+++++++|++|.+
T Consensus        43 Vk~~t~l~kL~~ay~ek-~gi~~~~~rfiF--dG~~L~~~~Tp~dl~mEDgD~Idv   95 (110)
T 2k8h_A           43 IKSRTALKKLIDTYCKK-QGISRNSVRFLF--DGTPIDETKTPEELGMEDDDVIDA   95 (110)
T ss_dssp             ECTTSSHHHHHHHHHHH-HTCCSSSCEEES--SSCBCCSSSHHHHHHCSSEEEEEE
T ss_pred             ECCCChHHHHHHHHHHH-hCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence            45789999999999999 899999999999  899999999999999999999876

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=98.32  E-value=3.6e-07  Score=69.91  Aligned_cols=52  Identities=10%  Similarity=0.148  Sum_probs=48.9

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      .+++++..|+++++++ .|+++++|||+|  +|+.|.+++|.+++++++|++|.+
T Consensus        48 k~tt~l~kL~~ay~ek-~gi~~~~~rF~F--dG~rl~~~~Tp~dl~medgD~Idv   99 (106)
T 2eke_C           48 KKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEA   99 (106)
T ss_dssp             ETTSCTHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             CCCCHHHHHHHHHHHH-hCCCcccEEEEE--CCeEcCCCCCHHHcCCCCCCEEEE
Confidence            4688999999999999 899999999999  899999999999999999999876

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=97.96  E-value=6.5e-06  Score=59.56  Aligned_cols=56  Identities=20%  Similarity=0.253  Sum_probs=45.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCC-ccc--CCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKG-KIL--KDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~G-k~L--~d~ktL~~ygv~~~~tl~vk   57 (233)
                      +++++|+.|||++|+++ .+++++.|.+.+.... +.|  .++.+|+++|++.|++|++.
T Consensus        20 v~~~~t~~~L~~~I~~~-~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~   78 (80)
T 2pjh_A           20 ATKRETAATFLKKVAKE-FGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF   78 (80)
T ss_dssp             CCSSCCHHHHHHHHHHH-TCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred             cCCcChHHHHHHHHHHH-cCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence            57899999999999999 6899999988764222 234  36779999999999999875

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=97.77  E-value=2.1e-05  Score=60.85  Aligned_cols=52  Identities=15%  Similarity=0.268  Sum_probs=48.5

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      ..++++..|+++++++ .|++++++|+.|  +|+.|.+++|.+++++++|++|.+
T Consensus        58 k~tt~L~KLm~aY~er-~Gl~~~~irFlF--DG~rI~~~~TP~dL~MEDgD~IdV  109 (115)
T 3kyd_D           58 KMTTHLKKLKESYCQR-QGVPMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEV  109 (115)
T ss_dssp             ETTSCTHHHHHHHHHH-HTCCTTSEEEEE--TTEECCTTCCTTTTTCCTTCEEEE
T ss_pred             ccCChHHHHHHHHHHH-hCCChhhEEEEE--CCeECCCCCCHHHcCCCCCCEEEE
Confidence            4678999999999999 799999999999  899999999999999999999875

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=97.73  E-value=2.3e-05  Score=66.19  Aligned_cols=58  Identities=10%  Similarity=0.207  Sum_probs=51.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      |.+++++..|+++++++ .|++++++|+.|  +|+.|.+++|.+++++++|++|.+  .-.|+
T Consensus        45 Ik~~t~l~kL~~ay~er-~Gi~~~~~RF~F--dG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg  104 (200)
T 3pge_A           45 IKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEAHREQIGG  104 (200)
T ss_dssp             ECTTSCTHHHHHHHHHH-HSSCGGGEEEEE--TTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred             EecCCHHHHHHHHHHHH-hCCChhhEEEEE--CCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence            35788999999999999 899999999999  899999999999999999999864  44444

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=97.60  E-value=4.7e-05  Score=63.94  Aligned_cols=57  Identities=11%  Similarity=0.198  Sum_probs=51.1

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      .+++++..|++++.++ .|++++++|+.|  +|+.|.+++|.++++++||++|.+  .-.|+
T Consensus        74 KrtTpL~KLmeAYcER-qGL~~~sIRFLF--DGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG  132 (207)
T 3tix_A           74 KKTTPLRRLMEAFAKR-QGKEMDSLTFLY--DGIEIQADQTPEDLDMEDNDIIEAHREQIGG  132 (207)
T ss_dssp             ETTSCTHHHHHHHHHH-TTCCGGGSCEEE--TTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred             ccCChHHHHHHHHHHH-hCCCcccEEEEE--CCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence            4678999999999999 899999999999  899999999999999999999865  44454

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=97.55  E-value=5.2e-05  Score=56.66  Aligned_cols=55  Identities=13%  Similarity=0.177  Sum_probs=40.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCccc--CCchhhhhcCCCCC-ceEEEec
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL--KDSDDIKSLGLKNG-DMVFIKD   58 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L--~d~ktL~~ygv~~~-~tl~vkd   58 (233)
                      +.++.||.++|++|+++ +||+|++|||++  +|+.|  +.++.-+.|.-+.. +-|.+-+
T Consensus        30 I~~~etv~~~ke~V~eq-TgIp~~~Q~LL~--eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s   87 (94)
T 4efo_A           30 IHSYNTATIFHELVYKQ-TKIISSNQELIY--EGRRLVLEPGRLAQHFPKTTEENPIFVVS   87 (94)
T ss_dssp             EETTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred             eccchHHHHHHHHHHHH-hCCCHHHHHHHh--CCCccccCCCCccccCCCCCCCCCEEEEe
Confidence            35789999999999999 999999999999  78766  44444555554333 3354433

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=97.53  E-value=0.00012  Score=52.85  Aligned_cols=53  Identities=26%  Similarity=0.404  Sum_probs=48.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcC-ceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPD-RQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~-rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+|-++.-++ .+|+++ +.||.|  +|..|+.+.+++||+++||+.|-+
T Consensus        26 I~~~t~v~kLi~ayc~~-~~I~~~~~IrllF--DGdRLdp~~tp~DlemeD~D~IDv   79 (82)
T 3goe_A           26 IPVDFTVKDLIKRYCTE-VKISFHERIRLEF--EGEWLDPNDQVQSTELEDEDQVSV   79 (82)
T ss_dssp             EETTSBHHHHHHHHHHH-HTCCCCTTCEEEE--TTEECCTTSBGGGSSCCTTCEEEE
T ss_pred             ecCCCCHHHHHHHHHHH-cCCCcCceEEEEE--cCcccCccCChhhhCCcCCceeee
Confidence            35789999999998888 799999 999999  899999999999999999998854

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=97.21  E-value=5.1e-05  Score=64.54  Aligned_cols=53  Identities=9%  Similarity=0.164  Sum_probs=0.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |..++++..|+++++++ .|++++++|+.|  +|+.+.+++|-++++++||++|.+
T Consensus        37 IKrtTpL~KLM~AYcER-qGLs~~siRFLF--DGqRI~dddTPadL~MEDGDtIDV   89 (227)
T 3v7o_A           37 IKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEA   89 (227)
T ss_dssp             --------------------------------------------------------
T ss_pred             EccCChHHHHHHHHHHH-hCCCccceEEEE--CCEecCCCCCHHHcCCCCCCEEEE
Confidence            35678899999999999 899999999999  899999999999999999999864

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=96.95  E-value=0.00029  Score=55.42  Aligned_cols=56  Identities=14%  Similarity=0.248  Sum_probs=47.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcC-------------------------------------ceeEEEcCCCcccCCchhh
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPD-------------------------------------RQAVRLEIKGKILKDSDDI   43 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~-------------------------------------rQrL~~~~~Gk~L~d~ktL   43 (233)
                      |+.+.||.+++..|.++ -||+..                                     +|+|..++++..|+++++|
T Consensus        28 VD~S~~V~~lv~~Ic~k-igI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~dd~~~WLD~srtL  106 (128)
T 2kc2_A           28 VDDSKTVTDMLMTICAR-IGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGRTL  106 (128)
T ss_dssp             EEECSSHHHHHHHHHHH-HTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCCSSSEEEECSSSCH
T ss_pred             eCCCcCHHHHHHHHHHH-hCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcccCCCCcccCCCcH
Confidence            46788999999999998 677744                                     7777666667899999999


Q ss_pred             hhcCCCCCceEEEe
Q psy9586          44 KSLGLKNGDMVFIK   57 (233)
Q Consensus        44 ~~ygv~~~~tl~vk   57 (233)
                      .++||.+++||.++
T Consensus       107 ~EQGI~e~~tllLR  120 (128)
T 2kc2_A          107 REQGVEEHETLLLR  120 (128)
T ss_dssp             HHHTCCTTSEEEEE
T ss_pred             HHcCCCCCCEEEEE
Confidence            99999999998775

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=96.70  E-value=0.0024  Score=47.77  Aligned_cols=52  Identities=19%  Similarity=0.289  Sum_probs=47.6

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      ..+++...|.++.+++ .|++++.-|+.|  +|..|.+++|-++++++||++|.+
T Consensus        44 k~~t~l~kLm~aY~~~-~g~~~~~vrF~F--DG~rI~~~~TP~dLdMEDgD~IDv   95 (97)
T 2jxx_A           44 SRDSPLKTLMSHYEEA-MGLSGRKLSFFF--DGTKLSGRELPADLGMESGDLIEV   95 (97)
T ss_dssp             ETTSCHHHHHHHHHHH-TTCSSSCCEEEE--TTEECCSCSCHHHHTCCTTEEEEE
T ss_pred             CCCChHHHHHHHHHHH-HCCCcccEEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence            3578899999999998 899999999999  899999999999999999999865

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=96.34  E-value=0.0026  Score=53.60  Aligned_cols=57  Identities=11%  Similarity=0.193  Sum_probs=49.8

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      ..+++..-|+++.+++ .|++++++|+.|  +|+.+.+++|-++++.+|+++|.+  +-.|+
T Consensus        38 ~~~~~l~kl~~~y~~~-~g~~~~~~~f~f--dG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg   96 (209)
T 3uf8_A           38 KKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEAHREQIGG   96 (209)
T ss_dssp             ETTSCTHHHHHHHHHH-HTCCGGGCEEEE--TTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred             eeCCHHHHHHHHHHHh-hCCChheEEEEE--CCEeccCCCChHHhhhcccccchhhcccccc
Confidence            4578899999999999 899999999999  899999999999999999998754  44443

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=96.29  E-value=0.00066  Score=61.91  Aligned_cols=53  Identities=9%  Similarity=0.164  Sum_probs=0.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |..+++...|+++++++ .|++++++|+.|  +|+.|.+++|.++++++||++|.+
T Consensus        37 Ik~~t~l~kLm~aY~~r-~G~~~~~~rFlF--dG~rI~~~~TP~~L~MEDgD~Idv   89 (360)
T 3ix6_A           37 IKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEA   89 (360)
T ss_dssp             --------------------------------------------------------
T ss_pred             EecCChHHHHHHHHHHH-hCCCcceEEEEE--CCeECCCCCChHHcCCCccchhhh
Confidence            35678899999999999 899999999999  899999999999999999999854

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=95.43  E-value=0.0025  Score=58.05  Aligned_cols=58  Identities=10%  Similarity=0.205  Sum_probs=0.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      |..+++...|++..+++ .|++++++|+.|  +|+.|.+++|-+++|+++|++|.+  +-.|+
T Consensus        46 i~~~~~~~~l~~~y~~~-~g~~~~~~~f~f--~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg  105 (389)
T 4da1_A           46 IKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQAPEDLDMEDNDIIEAHREQIGG  105 (389)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             ECCCChHHHHHHHHHHH-hCCCcceEEEEE--CCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence            35678899999999999 899999999999  899999999999999999998753  44443

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=95.33  E-value=0.014  Score=42.23  Aligned_cols=54  Identities=22%  Similarity=0.275  Sum_probs=42.0

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCc---eeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDR---QAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~r---QrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |...||++|++.+.+. -+++..+   =.+....+|..|+++++|+||++++|+.+.+
T Consensus        24 P~~~tvK~Li~~l~ea-~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A           24 SDYHPVKKVIDIAWQA-QSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI   80 (81)
T ss_dssp             ETTSBTTHHHHHHHHH-SCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred             CCchhHHHHHHHHHHH-hCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence            4567999999999888 4565421   2455555788899999999999999998865

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=94.55  E-value=0.058  Score=40.06  Aligned_cols=54  Identities=15%  Similarity=0.120  Sum_probs=46.7

Q ss_pred             CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      .++..+-|.+..+++ .|+++++.|+.|  +|..+.++.|=+++|+++|++|-+--+
T Consensus        39 ~tt~l~KL~~aYc~r-~gv~~~sirFlf--DG~rI~~~~TP~~L~meD~DiID~~~~   92 (95)
T 2l76_A           39 MSEPLQSVVDHMATH-LGVSPSRILLLF--GETELSPTATPRTLKLGVADIIDCVVL   92 (95)
T ss_dssp             SSSCTHHHHHHHHHH-HTSCGGGEEEEE--TTEECCTTSCHHHHTCCSSCEEEEEEC
T ss_pred             cCChHHHHHHHHHhh-cCCChhhEEEEE--CCcCCCCCCCHhHcCCCCCCEEEEEEe
Confidence            355667788888888 899999999999  899999999999999999999866433

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=93.00  E-value=0.16  Score=36.07  Aligned_cols=54  Identities=9%  Similarity=0.041  Sum_probs=41.1

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCccc---CCchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL---KDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L---~d~ktL~~ygv~~~~tl~vk   57 (233)
                      +.++||.+|.+-+...  +.++...+|.-.--.|.|   +.++||+|.|+.++++|++.
T Consensus        25 ~~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve   81 (84)
T 3qx1_A           25 LASNKLQIVFDFVASK--GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   81 (84)
T ss_dssp             ETTSBHHHHHHHHHHT--TCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHc--CCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEE
Confidence            3578999999999874  566777777642124667   34679999999999999875

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=92.61  E-value=0.13  Score=46.18  Aligned_cols=56  Identities=21%  Similarity=0.213  Sum_probs=44.6

Q ss_pred             CCcccHHHHHHHHHHHhCC---CCcCceeEEE----cCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQ---LYPDRQAVRL----EIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~---i~~~rQrL~~----~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      ++++||.|+-..|-++.++   -+++.=.|..    +.+|+.|+++++|+.|++++|+.+..+
T Consensus        20 ~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~   82 (371)
T 3ivf_A           20 EPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYR   82 (371)
T ss_dssp             CTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEE
T ss_pred             CCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeecc
Confidence            6899999999999887442   2456668887    346788999999999999999877653

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.75  E-value=0.18  Score=36.70  Aligned_cols=57  Identities=14%  Similarity=0.268  Sum_probs=47.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEc-CCCcccCCchhhhhcCCCCCceEEEecCCC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE-IKGKILKDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~-~~Gk~L~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      |+|..++.++--.|=++ ..++|+.--|.-+ ..+..|+=+++|.|||+++   +|.+|-..
T Consensus        27 VSP~vpL~ellp~IC~K-cefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d~~~   84 (91)
T 2daj_A           27 VSPHASLQELAPIICSK-CEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMDVNR   84 (91)
T ss_dssp             ECSSSCTTTHHHHHHHH-TTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEECCC
T ss_pred             eCCCCcHHHHHHHHhhc-ccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheecccc
Confidence            57888999999999999 5699988877644 3578899999999999984   88888643

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=91.29  E-value=0.4  Score=35.98  Aligned_cols=59  Identities=8%  Similarity=0.070  Sum_probs=44.2

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC--C-chhhhhcCCCCCceEEEecCCC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--D-SDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~--d-~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      +.++||.||.+-+... .+.+...-.|.-.--.|.++  | ++||+|.|+.+.++|+++....
T Consensus        31 ~~~~tl~~v~~fV~~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~~~   92 (109)
T 2dzk_A           31 PSDAPLEEARQFAAQT-VGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAGR   92 (109)
T ss_dssp             CTTSBHHHHHHHHHHH-HTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECCSS
T ss_pred             CCCCCHHHHHHHHHhc-cCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEECcC
Confidence            4678999999999887 55555556665422355665  3 6799999999999999988754

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=91.28  E-value=0.29  Score=37.31  Aligned_cols=54  Identities=11%  Similarity=0.204  Sum_probs=33.6

Q ss_pred             cccHHHHHHHHHHH-hCCCCcCc------eeEEEc--CCCcccCCc-------------hhhhhcCCCCCceEEEe
Q psy9586           4 SFTVKDIKKEVHKA-KSQLYPDR------QAVRLE--IKGKILKDS-------------DDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         4 ~~TV~~LK~~i~~~-~~~i~~~r------QrL~~~--~~Gk~L~d~-------------ktL~~ygv~~~~tl~vk   57 (233)
                      -+||.++|++|-+. |.|.|-++      ..|-.-  ..|+.|.|.             .||++|+|.||+|+-+.
T Consensus        33 CDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l~  108 (111)
T 4e71_A           33 CDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDGATLILS  108 (111)
T ss_dssp             TCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTTCEEEEE
T ss_pred             cCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCCCEEEEE
Confidence            47999999998875 44555432      234332  245556442             27999999999999763

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=90.70  E-value=0.11  Score=46.17  Aligned_cols=29  Identities=21%  Similarity=0.407  Sum_probs=24.9

Q ss_pred             EEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586          29 RLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus        29 ~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      ++--+|+.|+|+++|++||+++|++|++.
T Consensus       275 RLi~~Gk~L~D~~TLsdygI~~gstL~Lv  303 (307)
T 3ai5_A          275 RLIFAGKQLEDGRTLSDYNIQKESTLHLV  303 (307)
T ss_dssp             EEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             EEEeCCeecCCCCCHHHcCCCCCCEEEEE
Confidence            33347999999999999999999999874

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=90.35  E-value=0.45  Score=37.54  Aligned_cols=53  Identities=17%  Similarity=0.275  Sum_probs=33.8

Q ss_pred             cccHHHHHHHHHHH-hCCCCcCc------eeEEE--cCCCc-ccCCc-------------hhhhhcCCCCCceEEE
Q psy9586           4 SFTVKDIKKEVHKA-KSQLYPDR------QAVRL--EIKGK-ILKDS-------------DDIKSLGLKNGDMVFI   56 (233)
Q Consensus         4 ~~TV~~LK~~i~~~-~~~i~~~r------QrL~~--~~~Gk-~L~d~-------------ktL~~ygv~~~~tl~v   56 (233)
                      -+||.++|++|-+. |.+.|-++      --|-.  ...|+ .|.|.             .||+.|+|.||++|-+
T Consensus        50 CDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dga~l~l  125 (138)
T 2r2o_A           50 CDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVAL  125 (138)
T ss_dssp             TCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTTCEEEE
T ss_pred             cccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCCCEEEE
Confidence            47999999998875 55554332      12221  11233 24332             2899999999999875

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=87.97  E-value=0.92  Score=37.93  Aligned_cols=59  Identities=22%  Similarity=0.241  Sum_probs=43.8

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcC-ceeEEE-c--CCCcccCC-chhhhhcCCCCCceEEE--ecCCC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPD-RQAVRL-E--IKGKILKD-SDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~-rQrL~~-~--~~Gk~L~d-~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      +..+||.+|++++-+. -+++++ .-||.. .  .+...|+| ++||+|+++.+|.+|.+  ++-.+
T Consensus       147 Sk~~ti~~l~~~~~~~-~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg  212 (217)
T 4a3p_A          147 SKADTIDTIEKEIRKI-FSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG  212 (217)
T ss_dssp             CTTSBHHHHHHHHHHH-TTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred             cccchHHHHHHHHHHH-hCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            5678999999999998 689987 478863 2  23356666 56999999999998765  54433

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=87.95  E-value=1.5  Score=32.08  Aligned_cols=55  Identities=13%  Similarity=0.201  Sum_probs=44.9

Q ss_pred             CCCcccHHHH-HHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           1 VSGSFTVKDI-KKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~L-K~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      |.|++|+.|+ ++..++  -|+++++=.|.+  ++|.||-+-.+.-.|+-+|+++.+.-.
T Consensus        26 vtp~t~L~~VL~eaC~K--~gl~~~~~~Lkh--~~k~lDLSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A           26 VTPSTVLLQVLEDTCRR--QDFNPSEYDLKF--QRTVLDLSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             CCTTSBHHHHHHHHHHH--TTCCGGGCEEEE--TTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred             ECCCCCHHHHHHHHHHH--hCCChhhCeEEe--CCEeccccceeEecCCCCCCEEEEEEc
Confidence            5788999995 555555  489998888888  789998888899999999999987543

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=87.08  E-value=1.5  Score=37.03  Aligned_cols=59  Identities=20%  Similarity=0.293  Sum_probs=44.7

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcC-ceeEEEc-C--CCcccCC-chhhhhcCCCCCceEEE--ecCCC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPD-RQAVRLE-I--KGKILKD-SDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~-rQrL~~~-~--~Gk~L~d-~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      +..+||.+|++.+-+. -+++++ .-||..- .  +...|+| +++|+|+++.++.+|.+  +|-.+
T Consensus       159 Sk~~ti~~l~~~~~~~-~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg  224 (231)
T 3jyu_A          159 SKADTIATIEKEMRKL-FNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG  224 (231)
T ss_dssp             CTTCBHHHHHHHHHHH-TTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred             cccCcHHHHHHHHHHH-hCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence            4678999999999998 689997 4788752 1  3456765 57999999999998765  44433

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=87.02  E-value=0.45  Score=36.98  Aligned_cols=28  Identities=4%  Similarity=0.039  Sum_probs=25.3

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRL   30 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~   30 (233)
                      ..++|+.++|+++++. -|+|+++|||..
T Consensus        63 ~k~~~~~~~~~~va~~-lg~~~~~~RlW~   90 (130)
T 2kvr_A           63 LKNSSLAEFVQSLSQT-MGFPQDQIRLWP   90 (130)
T ss_dssp             CTTSBHHHHHHHHHHH-HCCCGGGCEEEE
T ss_pred             eccCcHHHHHHHHHHH-hCCCcccEEEEE
Confidence            4578999999999998 599999999986

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=86.47  E-value=0.95  Score=34.74  Aligned_cols=58  Identities=17%  Similarity=0.241  Sum_probs=44.0

Q ss_pred             CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCccc--C-CchhhhhcCCCCCceEEEecCCCc
Q psy9586           3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL--K-DSDDIKSLGLKNGDMVFIKDLGPQ   62 (233)
Q Consensus         3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L--~-d~ktL~~ygv~~~~tl~vkdlg~q   62 (233)
                      .++||.+|.+-|...  +.++..-.|.-.--.|.|  + .+++|+|.|+....+|+|..+.+.
T Consensus        62 ~~~tl~~V~~fV~~~--~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d~~  122 (124)
T 1wj4_A           62 EQAKLLALVKHVQSK--GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESGPS  122 (124)
T ss_dssp             TTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECCST
T ss_pred             CCCCHHHHHHHHHhc--CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEccCC
Confidence            578999999999775  566666677643235667  3 368999999999999999887653

>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A

Probab=86.18  E-value=1.4  Score=32.69  Aligned_cols=64  Identities=17%  Similarity=0.239  Sum_probs=43.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEc----------CCCcccCC------chhhhhcCCCCCceEEEecCCCccc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE----------IKGKILKD------SDDIKSLGLKNGDMVFIKDLGPQIG   64 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~----------~~Gk~L~d------~ktL~~ygv~~~~tl~vkdlg~qi~   64 (233)
                      |+++.|.+|+-+.+.+. +.+...+=.|+..          ...++|++      +++|.|+|+++|.+|+|.|-.-..+
T Consensus        11 v~~~~TL~~lid~L~~~-p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~~~p~~   89 (98)
T 1y8x_B           11 FSPSAKLQEVLDYLTNS-ASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQT   89 (98)
T ss_dssp             CCTTCBHHHHHHHHHHC-TTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTTCSSC
T ss_pred             ECCchhHHHHHHHHHhC-hHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECCCCccc
Confidence            57889999999999886 5444333334331          12234543      3578999999999999998765544


Q ss_pred             h
Q psy9586          65 W   65 (233)
Q Consensus        65 w   65 (233)
                      .
T Consensus        90 ~   90 (98)
T 1y8x_B           90 V   90 (98)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=85.36  E-value=0.73  Score=35.84  Aligned_cols=54  Identities=11%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             cccHHHHHHHHHHH-hCCCCc------CceeEEEc--CCCcc-cCCc-------------hhhhhcCCCCCceEEEe
Q psy9586           4 SFTVKDIKKEVHKA-KSQLYP------DRQAVRLE--IKGKI-LKDS-------------DDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         4 ~~TV~~LK~~i~~~-~~~i~~------~rQrL~~~--~~Gk~-L~d~-------------ktL~~ygv~~~~tl~vk   57 (233)
                      -+||.++|++|-+. |.+.|-      +...|-.-  ..|+. |.|.             .||++|+|.||+|+-+.
T Consensus        26 CDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dgatv~l~  102 (127)
T 3h6n_A           26 TDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEGASLAMS  102 (127)
T ss_dssp             TSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTTCEEEEE
T ss_pred             cCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCCCEEEEE
Confidence            47999999998875 445543      33344332  12332 4331             28999999999999764

>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A

Probab=85.04  E-value=0.72  Score=35.86  Aligned_cols=54  Identities=13%  Similarity=0.225  Sum_probs=37.4

Q ss_pred             cccHHHHHHHHHHHhCCC----CcC---ceeEEEcCCCcccCC--chhhhhcCCCCCceEEEecCCC
Q psy9586           4 SFTVKDIKKEVHKAKSQL----YPD---RQAVRLEIKGKILKD--SDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         4 ~~TV~~LK~~i~~~~~~i----~~~---rQrL~~~~~Gk~L~d--~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      .+|..+|-+.+.+++ |.    +..   .|||.+++   -.+|  +++|+++|+++|+.|.+.|=..
T Consensus        19 ~~TL~dLV~~l~~~~-gy~~eiSV~~~~~~rLLyD~---DfDDnl~k~L~dLgv~~gsfLtv~DEdd   81 (127)
T 3onh_A           19 KMKLSDFVVLIREKY-SYPQDISLLDASNQRLLFDY---DFEDLNDRTLSEINLGNGSIILFSDEEG   81 (127)
T ss_dssp             HCBHHHHHHHHHHHH-TCCSSEEEEETTTTEEEEET---TBCTTTTSBTTTTTCCTTCEEEEEESCC
T ss_pred             ccCHHHHHHHHHHhc-CCCCcEEEEecCCCCeEeCC---CccccccCcHHHcCcCCCcEEEEEcccc
Confidence            468888777777663 43    323   46777742   2333  5799999999999999987544

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=83.63  E-value=3  Score=30.98  Aligned_cols=56  Identities=7%  Similarity=0.140  Sum_probs=41.9

Q ss_pred             CcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC--CchhhhhcCCCCCceEEEecCC
Q psy9586           3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK--DSDDIKSLGLKNGDMVFIKDLG   60 (233)
Q Consensus         3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~--d~ktL~~ygv~~~~tl~vkdlg   60 (233)
                      .++||.+|.+-+..+  +..+..-+|.-.--.|.|.  .++||+|.|+.+..+|+|.++.
T Consensus        42 ~~~tl~~v~~fv~~~--~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~   99 (109)
T 2cr5_A           42 KSWNSQVLLDWMMKV--GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKE   99 (109)
T ss_dssp             SSSBTHHHHHHHHHH--TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECC
T ss_pred             CCCCHHHHHHHHHhc--CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCC
Confidence            578999999999875  4555666665321245665  4679999999999999998764

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=83.47  E-value=2  Score=32.93  Aligned_cols=53  Identities=21%  Similarity=0.252  Sum_probs=37.7

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCC-chhhhhcCCCCCceE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKD-SDDIKSLGLKNGDMV   54 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d-~ktL~~ygv~~~~tl   54 (233)
                      +.++||.||.+-|....++.......|.-.--.|.|+| ++||+|.|+.+...|
T Consensus        70 ~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl  123 (127)
T 1s3s_G           70 NHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV  123 (127)
T ss_dssp             CSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred             CCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence            46889999999998863344455566764323577765 689999999985444

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=83.01  E-value=2.5  Score=32.37  Aligned_cols=53  Identities=15%  Similarity=0.280  Sum_probs=34.2

Q ss_pred             cccHHHHHHHHHHH-hCCCCcCc------eeEEEc--CCCc-ccCC---------c----hhhhhcCCCCCceEEE
Q psy9586           4 SFTVKDIKKEVHKA-KSQLYPDR------QAVRLE--IKGK-ILKD---------S----DDIKSLGLKNGDMVFI   56 (233)
Q Consensus         4 ~~TV~~LK~~i~~~-~~~i~~~r------QrL~~~--~~Gk-~L~d---------~----ktL~~ygv~~~~tl~v   56 (233)
                      -+||.++|++|-+. |.+.|-++      ..|-.-  ..|+ .|.|         +    .||++|+|.||+++-+
T Consensus        36 CDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dgatl~l  111 (117)
T 4e74_A           36 CDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPDGSVVAL  111 (117)
T ss_dssp             TSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCTTCEEEE
T ss_pred             CCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCCCCEEEE
Confidence            47999999998775 45555432      234332  1233 2433         1    2899999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	2e-05
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	6e-05
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	9e-05
d1x1ma1	94	d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse	6e-04
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	7e-04
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	9e-04
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	0.004

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQA-VRLEIKGKILKDSDDIKSLGLKNGD---MVFI 56
          +S   TV D+K+ +    + + P+RQ  + L++KGK  ++   + +L LK      M+  
Sbjct: 24 LSEDDTVLDLKQFLKT-LTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82

Query: 57 KDLGPQIG 64
          ++ GP  G
Sbjct: 83 RESGPSSG 90

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          V+   TV   K+ ++K  + +    Q  RL   GKILKD   ++S  +++G  V
Sbjct: 17 VAPESTVLQFKEAINK-ANGIPVANQ--RLIYSGKILKDDQTVESYHIQDGHSV 67

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (89), Expect = 9e-05
 Identities = 12/72 (16%), Positives = 28/72 (38%), Gaps = 11/72 (15%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK--------ILKDSDDIKSLGLKNGD 52
          +  S TV+ +K  + +   ++        L  +          +  D   ++   ++NGD
Sbjct: 29 LPDSMTVQKVKGLLSR-LLKVPVSEL--LLSYESSKMPGREIELENDLQPLQFYSVENGD 85

Query: 53 MVFIKDLGPQIG 64
           + ++  GP  G
Sbjct: 86 CLLVRWSGPSSG 97

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (82), Expect = 6e-04
 Identities = 12/54 (22%), Positives = 25/54 (46%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
            G +++  +K+ +     +  PD + + L   G+ LKD   +   G++ G  V
Sbjct: 34 SLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTV 87

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 7e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 1  VSGSFTVKDIKKEVH-KAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGD 52
              ++V  +K  +      +  P+ Q  RL   GK+L D   ++ L  K   
Sbjct: 26 GDRGWSVGHLKAHLSRVYPERPRPEDQ--RLIYSGKLLLDHQCLRDLLPKQEK 76

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 9e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI 56
          +    TVK +K+++   K +        +L   GKIL D   I+   +   + V +
Sbjct: 19 MEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVV 74

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.004
 Identities = 13/54 (24%), Positives = 23/54 (42%)

Query: 1  VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMV 54
          +    TVK +K+++   K +        +L   GKIL D   +K   +   + V
Sbjct: 17 IDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFV 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.55
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.52
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.51
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.5
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.5
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.5
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.5
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.49
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.49
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.47
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.47
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.45
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.44
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.43
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.43
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.42
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.38
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.37
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.37
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.36
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.35
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.32
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.3
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.27
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.26
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.26
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.23
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.22
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.21
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.19
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.16
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.15
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.12
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.06
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	98.9
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	98.57
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	97.78
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	97.3
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	92.59
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	91.92
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	91.2
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	90.8
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	88.94
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	88.51

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-15  Score=106.81  Aligned_cols=55  Identities=24%  Similarity=0.371  Sum_probs=52.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+|+++|||+|.++|+.|+|+++|++||+++|++|++
T Consensus        17 V~~~~tV~~lK~~I~~~-~gip~~~QrLi~~~~Gk~L~D~~tL~~y~i~~g~~i~l   71 (76)
T d1z2ma1          17 LSSSMSVSELKAQITQK-IGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLL   71 (76)
T ss_dssp             CCSSCCHHHHHHHHHHH-HCCCGGGEEEEEETTCCBCCSSSCSGGGTCCTTCEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-hccCCccEEEEEcCCCeeccCCCcHHHcCCCCCCEEEE
Confidence            57899999999999999 89999999999987899999999999999999999986

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.52  E-value=6.6e-15  Score=103.68  Aligned_cols=53  Identities=23%  Similarity=0.392  Sum_probs=51.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+++++|||+|  +|+.|+|+++|++||+++|+|||+
T Consensus        17 V~~~~tV~~lK~~i~~~-~gi~~~~qrLi~--~Gk~L~d~~tL~~y~I~~~sti~l   69 (73)
T d1bt0a_          17 IEPTDTIDRIKERVEEK-EGIPPVQQRLIY--AGKQLADDKTAKDYNIEGGSVLHL   69 (73)
T ss_dssp             CCTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-hCCChHHEEEEE--CCeEcCCCCcHHHcCCCCCCEEEE
Confidence            67899999999999999 899999999999  999999999999999999999986

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=5.8e-15  Score=104.11  Aligned_cols=54  Identities=30%  Similarity=0.423  Sum_probs=51.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .|+|+++|||+|  +|+.|+|+++|++||+++|++||+.
T Consensus        17 v~~~~tV~~lK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~~~I~~g~~i~lV   70 (73)
T d2bwfa1          17 VAPESTVLQFKEAINKA-NGIPVANQRLIY--SGKILKDDQTVESYHIQDGHSVHLV   70 (73)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred             ECCCChHHHHHHHHHHH-HCcChHHeEEEE--CCeEccCCCcHHHCCCCCCCEEEEE
Confidence            57899999999999999 799999999999  9999999999999999999999874

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=7.1e-15  Score=105.07  Aligned_cols=54  Identities=22%  Similarity=0.294  Sum_probs=51.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ +|+||++|||+|  +|+.|+|+++|++||+++|+|||+.
T Consensus        19 v~~~~tV~~lK~~i~~~-~gip~~~qrLi~--~Gk~L~d~~tL~~y~I~~~sti~lv   72 (78)
T d2zeqa1          19 VDSDTSILQLKEVVAKR-QGVPADQLRVIF--AGKELPNHLTVQNCDLEQQSIVHIV   72 (78)
T ss_dssp             ECTTCBHHHHHHHHHHH-HTCCGGGEEEEE--TTEEECTTCBGGGSSCCTTCEEEEE
T ss_pred             EcccccHHHHHHHHHHH-HCcChhHeEEEE--eeeEcCCCCCHHHcCCCCCCEEEEE
Confidence            47899999999999999 899999999999  9999999999999999999999973

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-14  Score=106.04  Aligned_cols=54  Identities=15%  Similarity=0.368  Sum_probs=51.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ +|+|+++|||+|  +||.|+|+++|++||+++|+||++.
T Consensus        24 v~~~~tV~~lK~~I~~~-~gip~~~qrLi~--~Gk~L~d~~tL~~y~I~~~stl~l~   77 (87)
T d1wh3a_          24 INPNSFILGLKQQIEDQ-QGLPKKQQQLEF--QGQVLQDWLGLGIYGIQDSDTLILS   77 (87)
T ss_dssp             ECSSSBHHHHHHHHHHH-TCCCTTTEEEEE--TTEECCSSSBHHHHTCCTTEEEEEE
T ss_pred             ECCcCcHHHHHHHHHHH-HCcChHHeEEEe--eceEcCCCCcHHHcCCCCCCEEEEE
Confidence            57899999999999999 999999999999  9999999999999999999999873

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.5e-15  Score=104.54  Aligned_cols=54  Identities=15%  Similarity=0.310  Sum_probs=51.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      +++++||++||++|+++ +|+|+++|||+|  +|+.|+|+++|++||+++|+|||+.
T Consensus        19 v~~~~tV~~lK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~~y~I~~~sti~lv   72 (76)
T d2faza1          19 LSRLTKVEELRRKIQEL-FHVEPGLQRLFY--RGKQMEDGHTLFDYEVRLNDTIQLL   72 (76)
T ss_dssp             ECTTCBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTCBTTTTTCCTTCEEEEE
T ss_pred             CCCCCCHHHHHHHHHHH-HCcChHHeEEEE--eeEeccCCCcHHHcCCCCCCEEEEE
Confidence            46889999999999999 899999999999  9999999999999999999999863

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=9.4e-15  Score=103.55  Aligned_cols=53  Identities=28%  Similarity=0.311  Sum_probs=50.8

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+++|++||+++|+||++
T Consensus        20 v~~~~tV~~lK~~I~~~-~gi~~~~qrL~~--~gk~L~d~~tL~~y~I~~~sti~l   72 (76)
T d1z2ma2          20 VRLTQTVAHLKQQVSGL-EGVQDDLFWLTF--EGKPLEDQLPLGEYGLKPLSTVFM   72 (76)
T ss_dssp             ECTTSBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-hcCChhHeEEEE--CCeECCCCCcHHHcCCCCCCEEEE
Confidence            47899999999999999 899999999999  999999999999999999999987

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.4e-14  Score=103.17  Aligned_cols=54  Identities=19%  Similarity=0.305  Sum_probs=51.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .|+|+++|||+|  +|+.|+|+++|++||+++|++|++.
T Consensus        19 v~~~~TV~~lK~~I~~~-~gip~~~qrLi~--~Gk~L~d~~tL~~y~I~~~s~i~lv   72 (76)
T d1wy8a1          19 VSRKATIEELRERVWAL-FDVRPECQRLFY--RGKQLENGYTLFDYDVGLNDIIQLL   72 (76)
T ss_dssp             ECTTCBHHHHHHHHHHH-SCCCTTTEEEEE--TTEECCSSSBHHHHTCCTTCEEEEE
T ss_pred             cCCCChHHHHHHHHHHH-HCCCchhcEEEE--EeeEecCCCCHHHcCCCCCCEEEEE
Confidence            47899999999999999 899999999999  9999999999999999999999874

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=7.6e-15  Score=103.60  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+||++|||++  +|+.|+|+++|++||+++|+||++
T Consensus        18 V~~~~tV~~lK~~I~~~-~~i~~~~q~Li~--~Gk~L~d~~tL~~y~I~~gstl~L   70 (73)
T d1m94a_          18 CLAEDSVGDFKKVLSLQ-IGTQPNKIVLQK--GGSVLKDHISLEDYEVHDQTNLEL   70 (73)
T ss_dssp             ECTTSBHHHHHHHHHHH-HCCTTTSEEEES--SSCEECTTSBHHHHTCCTTEEEEE
T ss_pred             ECCcCcHHHHHHHHHHh-hcccccEEEEEE--EeEEecccCcHHHcCCCCCCEEEE
Confidence            57899999999999999 899999999999  899999999999999999999986

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.3e-14  Score=102.64  Aligned_cols=54  Identities=24%  Similarity=0.301  Sum_probs=51.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .|+|+++|||+|  +|+.|+|+++|++||+++|+|||+.
T Consensus        20 V~~~~tV~~lK~~I~~~-~~ip~~~qrLi~--~Gk~L~d~~tL~~y~I~~~sti~lv   73 (80)
T d1ttna1          20 VRSTDTVFHMKRRLHAA-EGVEPGSQRWFF--SGRPLTDKMKFEELKIPKDYVVQVI   73 (80)
T ss_dssp             ECTTSHHHHHHHHHHHT-TCCCSTTCEEEE--TTEECCTTSHHHHCCCSSSCEEEEE
T ss_pred             ECCcCcHHHHHHHHHHH-hCCCcccEEEEE--CceEcCCCCcHHHcCCCCCCEEEEE
Confidence            57899999999999999 999999999999  9999999999999999999999974

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.7e-14  Score=101.23  Aligned_cols=53  Identities=21%  Similarity=0.419  Sum_probs=50.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+|+++|||.|  +|+.|+|+++|++||+++|++|++
T Consensus        17 v~~~~tV~~lK~~I~~~-~gi~~~~qrL~~--~Gk~L~d~~tL~~y~i~~~s~I~L   69 (76)
T d1ogwa_          17 VEPSDTIENVKAKIQDK-EGIPPDQQRLIF--AGKQLEDGRTLSDYNIQKESTLHL   69 (76)
T ss_dssp             CCTTSBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBGGGGTCCTTCEEEE
T ss_pred             ECCCCcHHHHHHhhhhh-cCCChHHEEeEE--CCeEcCCCCCHHHcCCCCCCEEEE
Confidence            57899999999999999 899999999999  999999999999999999999985

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.8e-14  Score=103.15  Aligned_cols=53  Identities=23%  Similarity=0.421  Sum_probs=50.9

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+|+++|||+|  +|+.|+|+++|++||+++|+||++
T Consensus        28 v~~~~tV~~lK~~I~~~-~~ip~~~q~Li~--~Gk~L~D~~tL~dY~I~~gsti~l   80 (86)
T d1zkha1          28 LPLTDQVSVIKVKIHEA-TGMPAGKQKLQY--EGIFIKDSNSLAYYNMANGAVIHL   80 (86)
T ss_dssp             ECTTSBHHHHHHHHHHH-TCCCTTTEEEEE--TTEEECTTSBHHHHTCCTTEEEEE
T ss_pred             ECCCChHHHHHHHHHhh-hcCChHHEEEEe--CCcCcCCCCCHHHcCCCCCCEEEE
Confidence            47899999999999999 999999999999  999999999999999999999986

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.3e-14  Score=101.03  Aligned_cols=55  Identities=16%  Similarity=0.467  Sum_probs=50.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEecC
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKDL   59 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkdl   59 (233)
                      |++++||++||++|+++ .|+|+++|||+|  +|+.|+|+++|+|||+ +|+|||+..-
T Consensus        17 V~~~~tV~~lK~~I~~~-~gip~~~qrLi~--~Gk~L~d~~tL~dy~i-~~~ti~lv~r   71 (73)
T d1wx9a1          17 VGAQMNVKEFKEHIAAS-VSIPSEKQRLIY--QGRVLQDDKKLQEYNV-GGKVIHLVER   71 (73)
T ss_dssp             ECTTSBHHHHHHHHHHH-HCCCTTTCCCEE--TTEECCSSSBHHHHTC-TTEEEBCCCS
T ss_pred             ECCCChHHHHHHHHHHH-hCCChHHEEEEE--CCeEccCCCCHHHhCC-CCCEEEEEec
Confidence            57899999999999999 899999999999  9999999999999999 5799987543

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.1e-14  Score=102.27  Aligned_cols=54  Identities=30%  Similarity=0.550  Sum_probs=51.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .|+++++|||+|  +|+.|+|+++|++||+++|+||++.
T Consensus        23 V~~~~tV~~lK~~i~~~-~gi~~~~qrL~~--~Gk~L~D~~tL~~y~i~~gsti~lv   76 (84)
T d1yqba1          23 VTDTCTIQQLKEEISQR-FKAHPDQLVLIF--AGKILKDPDSLAQCGVRDGLTVHLV   76 (84)
T ss_dssp             EETTCBHHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTSBHHHHTCCTTCEEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-HCcCchhEEEEE--eeeeccccCcHHHcCCCCCCEEEEE
Confidence            46889999999999999 899999999999  9999999999999999999999874

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.4e-14  Score=99.53  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=49.5

Q ss_pred             CCCcccHHHHHHHHHHHhCC---CCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQ---LYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~---i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|   +|+++|||+|  +|+.|+|+++|++||+++|++|++
T Consensus        19 v~~~~TV~~lK~~i~~~-~g~~~i~~~~qrLi~--~Gk~L~D~~tL~~y~I~~~s~i~~   74 (77)
T d1oqya4          19 MEPDETVKVLKEKIEAE-KGRDAFPVAGQKLIY--AGKILSDDVPIRDYRIDEKNFVVV   74 (77)
T ss_dssp             CCTTCBHHHHHHHHHHH-TCSSSCCSTEEEEES--SSSEECSSSBTTTTCCCTTSCEEE
T ss_pred             ECCCCcHHHHHHHHHHh-cCCCCCChHHEEeEE--CCcCccCCCcHHHcCCCCCCEEEE
Confidence            57899999999999998 55   8999999999  899999999999999999999875

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=3.7e-14  Score=106.14  Aligned_cols=53  Identities=15%  Similarity=0.153  Sum_probs=50.6

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||++||++|+++ .|+|+++|||++  +|+.|+|+.+|++|||++|+||++
T Consensus        45 V~p~~TV~~LK~~I~~~-~gip~~~qrLi~--~Gk~L~D~~tL~dygI~~GstI~L   97 (100)
T d1uh6a_          45 CNTDDTIGDLKKLIAAQ-TGTRWNKIVLKK--WYTIFKDHVSLGDYEIHDGMNLEL   97 (100)
T ss_dssp             EETTSBHHHHHHHHHHH-HCCCGGGCEEEE--TTEECCSSCBHHHHTCCTTEEEEE
T ss_pred             ECCcChHHHHHHHHHHH-HCCCcceEEEEE--EeecccCcCCHHHcCCCCCCEEEE
Confidence            46899999999999999 899999999999  999999999999999999999976

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=3.8e-14  Score=102.27  Aligned_cols=53  Identities=28%  Similarity=0.473  Sum_probs=50.5

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |++++||.+||++|+++ .++++++|||+|  +|+.|+|+++|++||+++|+||++
T Consensus        26 v~~~~tV~~lK~~I~~~-~~v~~~~qrL~f--~Gk~L~d~~tL~~~gI~~gs~I~l   78 (83)
T d1wx8a1          26 LAENSNVRRFKKQISKY-LHCNADRLVLIF--TGKILRDQDILSQRGILDGSTVHV   78 (83)
T ss_dssp             EETTCCHHHHHHHHHHH-TCSCTTTBCCEE--TTEECCTTSCHHHHTCCTTEEEEC
T ss_pred             ECCCChHHHHHHHHHHH-hCCChhHEEEEE--EhhccccCCcHHHcCCCCCCEEEE
Confidence            46889999999999999 899999999999  999999999999999999999986

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.6e-13  Score=99.95  Aligned_cols=55  Identities=24%  Similarity=0.367  Sum_probs=50.0

Q ss_pred             CCCcccHHHHHHHHHHHh--CCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAK--SQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~--~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++.  .++++++|||+|  +|+.|+|+++|++||+++|++|++.
T Consensus        17 v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~--~Gk~L~d~~tL~~y~I~~~s~i~lv   73 (95)
T d1uela_          17 IDPEETVKALKEKIESEKGKDAFPVAGQKLIY--AGKILNDDTALKEYKIDEKNFVVVM   73 (95)
T ss_dssp             CCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEE--TTEECCTTSBGGGGTCCSSSEEEEE
T ss_pred             ECCCccHHHHHHHHHhhhcccCCCccceEEEE--CCeEccCCCcHHHcCCCCCCEEEEE
Confidence            678999999999999872  248999999999  9999999999999999999999863

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=3.8e-13  Score=98.20  Aligned_cols=56  Identities=25%  Similarity=0.299  Sum_probs=51.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcC-CCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEI-KGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~-~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||+|||++|+++ .++||++|||++.. +|+.|+|+++|++||+++|++|++-
T Consensus        24 v~~~~tV~~LK~~i~~~-t~vp~~~QkLi~~~~~Gk~L~D~~tL~~~~i~~g~~i~lv   80 (90)
T d1v5ta_          24 LSEDDTVLDLKQFLKTL-TGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMM   80 (90)
T ss_dssp             CCSSSBHHHHHHHHHHH-TCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEE
T ss_pred             eCCCCcHHHHHHHHHHH-HcCCHHHhhhhhhccCCcCCCCcCcHHHcCCCCCCEEEEE
Confidence            57899999999999999 89999999999431 8999999999999999999999974

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.1e-13  Score=102.05  Aligned_cols=54  Identities=28%  Similarity=0.422  Sum_probs=51.2

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.+||++|+++ .|+++++|||+|  +|+.|+|+++|++|||++|++||+.
T Consensus        48 V~~~~tV~~LK~~I~~~-~gi~~~~qrLi~--~Gk~L~D~~tL~~~~I~~g~~I~lv  101 (103)
T d1j8ca_          48 VPENSSVQQFKEAISKR-FKSQTDQLVLIF--AGKILKDQDTLIQHGIHDGLTVHLV  101 (103)
T ss_dssp             ECTTCCHHHHHHHHHHH-HCSCSSSEEEEE--TTEEESTTSCGGGTTCSSSEEEEEE
T ss_pred             ECCCChHHHHHHHHHHH-HCcCHHHeeeee--eeecccCCCcHHHcCCCCCCEEEEE
Confidence            57899999999999999 799999999999  9999999999999999999999874

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.36  E-value=3.5e-13  Score=102.51  Aligned_cols=55  Identities=18%  Similarity=0.302  Sum_probs=50.7

Q ss_pred             cccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE--ecCCC
Q psy9586           4 SFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI--KDLGP   61 (233)
Q Consensus         4 ~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v--kdlg~   61 (233)
                      ++||.+||++|+++ .|+|+++|||+|  +|+.|+|+++|++|||++|+||++  |-.|+
T Consensus        51 sdtV~~lK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~tL~~ynI~~gsti~L~lr~rGG  107 (111)
T d1we6a_          51 SENVGSLKEKIAGE-IQIPANKQKLSG--KAGFLKDNMSLAHYNVGAGEILTLSLRERSG  107 (111)
T ss_dssp             SSBHHHHHHHHHHH-TTCCTTTSEEEC--SSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred             ccHHHHHHHHHHHH-HCCCccceEEEE--eeEEccccCCHHHcCCCCCCEEEEEeeCCCC
Confidence            88999999999999 899999999999  899999999999999999999986  44444

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.7e-13  Score=96.11  Aligned_cols=53  Identities=26%  Similarity=0.352  Sum_probs=49.0

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC-CchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~-d~ktL~~ygv~~~~tl~vk   57 (233)
                      ++++||+|||++|+++ .|+|+++|+|++  +|+.|+ |+++|++||+++|++|++-
T Consensus        23 ~~~~Tv~~LK~~I~~~-tgvp~~~QkL~~--~G~~L~~d~~tL~~~gi~~g~~i~lv   76 (81)
T d1wxva1          23 SSEPVVQDLAQVVEEV-IGVPQSFQKLIF--KGKSLKEMETPLSALGIQDGCRVMLI   76 (81)
T ss_dssp             SSSCBHHHHHHHHHHH-TCCCTTTCEEEE--TTEEECCSSSBHHHHTCCSSEEEEEE
T ss_pred             CCccHHHHHHHHHHHH-HCcCHHHEEeee--cCeEeCcCCCChHHCCCCCCCEEEEE
Confidence            5788999999999999 999999999999  999996 5679999999999999874

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.1e-13  Score=99.26  Aligned_cols=55  Identities=9%  Similarity=0.174  Sum_probs=51.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD   58 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd   58 (233)
                      |++++||+|||++|+++ .++++++|||+|  +|+.|+|+++|++||++++++|++--
T Consensus        36 v~~~~TV~~LK~~I~~~-~gi~~~~qkLi~--~Gk~L~d~~tL~~~gI~~~s~i~vi~   90 (100)
T d1wjua_          36 TRLHITGRELRSKIAET-FGLQENYIKIVI--NKKQLQLGKTLEEQGVAHNVKAMVLE   90 (100)
T ss_dssp             EESSSBHHHHHHHHHHH-TTCCSTTCEEEE--TTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred             ECCCcHHHHHHHHHHHH-HCCCCeeEEEEE--cccCcCCCcCHHHcCCCCCCEEEEEE
Confidence            45789999999999999 899999999999  99999999999999999999998743

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=1.1e-12  Score=98.27  Aligned_cols=54  Identities=24%  Similarity=0.393  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC-CchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~-d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||++||++|+++ .++|+++|||+|  +|+.|+ |+++|++||+++|++|++.
T Consensus        28 V~~~~tV~~LK~~Ie~~-~gip~~~Q~Li~--~Gk~L~dd~~tL~~~gI~~g~~i~l~   82 (102)
T d1v5oa_          28 VNPDFELSNFRVLCELE-SGVPAEEAQIVY--MEQLLTDDHCSLGSYGLKDGDMVVLL   82 (102)
T ss_dssp             ECTTCBHHHHHHHHHHH-TCCCGGGBCEEE--TTEEECCSSSBHHHHTCCTTEEEEEC
T ss_pred             ECCcccHHHHHHHHHHH-hCCCcceEEEEe--CCeEeecccCCHHHcCCCCCCEEEEE
Confidence            57899999999999999 899999999999  999995 5679999999999999884

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=8.4e-13  Score=97.66  Aligned_cols=53  Identities=28%  Similarity=0.381  Sum_probs=49.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.+||++|+++ .++|+++|||+|  +|+.|+|+ +|++||+++|++|++-
T Consensus        24 v~~~~tV~~lK~~i~~~-~gvp~~~QkLi~--~Gk~L~d~-tL~~~gi~~g~~i~lv   76 (96)
T d1wgga_          24 LNTDEPPMVFKAQLFAL-TGVQPARQKVMV--KGGTLKDD-DWGNIKMKNGMTVLMM   76 (96)
T ss_dssp             EESSSCHHHHHHHHHHH-TCCCTTTSCCEE--TTEECCSS-CCCSCCCCSSCEEECC
T ss_pred             ECCCCcHHHHHHHhhhh-cCccceeeEEee--cCcccCCC-cHHHCCCCCCCEEEEE
Confidence            46889999999999999 899999999999  99999986 7999999999999873

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3.7e-12  Score=93.98  Aligned_cols=54  Identities=19%  Similarity=0.355  Sum_probs=47.5

Q ss_pred             CCcccHHHHHHHHHHHhC-CC-CcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKS-QL-YPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~-~i-~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      +.+.||.+||++|+++.+ +. +|++|||+|  +||.|+|+++|++||+++|+|||+.
T Consensus        35 ~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy--~Gk~L~D~~tL~~y~I~~gstihLV   90 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQESVPDPELIDLIY--CGRKLKDDQTLDFYGIQPGSTVHVL   90 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTTTCCCSSSEEEEE--TTEECCTTCBHHHHTCCTTCEEEEE
T ss_pred             CCccCHHHHHHHHHHHcccCCCChhheEEEE--CCeEECCCccHHHcCCCCCCEEEEE
Confidence            346799999999998753 34 479999999  9999999999999999999999974

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=9.4e-13  Score=97.20  Aligned_cols=53  Identities=21%  Similarity=0.385  Sum_probs=49.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.|||++|+++ .++|++||||++  +|+ |+|+++|++||+++|++|++.
T Consensus        33 v~~~~TV~~LK~~I~~~-tgvp~~~q~Li~--~g~-l~D~~tL~~~~I~~gs~i~lv   85 (95)
T d1v86a_          33 VPLDSTGSELKQKIHSI-TGLPPAMQKVMY--KGL-VPEDKTLREIKVTSGAKIMVV   85 (95)
T ss_dssp             ECTTSBHHHHHHHHHHH-HCSCSTTCCCBS--SSB-CCSSSBHHHHCCCTTEEEEEC
T ss_pred             ECCCCcHHHHHHHHHHH-hCCChhHEEEEe--ccc-ccCCCcHHHCCCCCCCEEEEE
Confidence            57899999999999999 899999999999  786 999999999999999999884

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.7e-12  Score=97.44  Aligned_cols=49  Identities=22%  Similarity=0.293  Sum_probs=45.9

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGD   52 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~   52 (233)
                      |++++||++||++|+++ +|+++++|||++  +|++|+|+++|+|||+++++
T Consensus        17 v~~~~TV~~lK~~I~~~-~gip~~~QrLi~--~Gk~L~D~~TL~dYgI~~~~   65 (103)
T d2c9wb1          17 AKESSTVFELKRIVEGI-LKRPPDEQRLYK--DDQLLDDGKTLGECGFTSQT   65 (103)
T ss_dssp             ECTTSBHHHHHHHHHHH-HCCCGGGEEEEE--TTEECCTTSBHHHHTCCTTT
T ss_pred             eCCCCcHHHHHHHHHHH-hCCCcccEEEEE--CCEEcCCCCCHHHcCCCccc
Confidence            47899999999999999 899999999999  99999999999999997654

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=3.9e-12  Score=93.96  Aligned_cols=59  Identities=15%  Similarity=0.167  Sum_probs=52.7

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCc-------ccCCchhhhhcCCCCCceEEEecCCCc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-------ILKDSDDIKSLGLKNGDMVFIKDLGPQ   62 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk-------~L~d~ktL~~ygv~~~~tl~vkdlg~q   62 (233)
                      ++++.||++||++|+.. .|+|+++|||++  .|+       .++|+++|++||+++|++||+.|..|.
T Consensus        25 ~~~~~TV~~LK~kle~~-tGip~~~qrL~~--~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~~p~   90 (95)
T d1v6ea_          25 YSRSLTIAEFKCKLELV-VGSPASCMELEL--YGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDHSGS   90 (95)
T ss_dssp             ECTTSBHHHHHHHHHHH-TCSCTTTCBCEE--ECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCCSCC
T ss_pred             eCCCCCHHHHHHHHHHH-hCcCchhEEEEE--eCCCCceeecccCCcCCHHHCCCCCCCEEEEEeCCCC
Confidence            46889999999999999 899999999998  444       468899999999999999999998774

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=3.2e-12  Score=97.75  Aligned_cols=53  Identities=21%  Similarity=0.276  Sum_probs=47.8

Q ss_pred             CCCcccHHHHHHHHH--------HHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCce--EEE
Q psy9586           1 VSGSFTVKDIKKEVH--------KAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDM--VFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~--------~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~t--l~v   56 (233)
                      |++++||.+||++|.        ++ .+++|++|||+|  .||.|+|+++|++|++++|++  ||+
T Consensus        33 v~p~~TV~~lK~~I~~~~p~~~~e~-~~~~~~~qRLiy--~Gk~L~D~~tL~~~~i~~g~~~~lhl   95 (116)
T d1wgha_          33 FSPNDSASDIAKHVYDNWPMDWEEE-QVSSPNILRLIY--QGRFLHGNVTLGALKLPFGKTTVMHL   95 (116)
T ss_dssp             ECTTCBHHHHHHHHHHSSSCCSSCC-CCCCTTTEEEEE--TTEEECSSCBTTTTTCCSSCEEEEEE
T ss_pred             ECCcchHHHHHHHHHhhcccccccc-cCCChHHeEEEE--CCEEecCCCCHHHcCCCCCCEEEEEE
Confidence            578999999999994        55 789999999999  999999999999999999987  554

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.21  E-value=9e-12  Score=93.00  Aligned_cols=58  Identities=17%  Similarity=0.162  Sum_probs=50.1

Q ss_pred             CCCcccHHHHHHHHHHH----hCCCC--cCceeEEEcCCCcccCCchhhhhcCCCCCc------eEEEecCC
Q psy9586           1 VSGSFTVKDIKKEVHKA----KSQLY--PDRQAVRLEIKGKILKDSDDIKSLGLKNGD------MVFIKDLG   60 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~----~~~i~--~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~------tl~vkdlg   60 (233)
                      |++++||.+||++|++.    .+|+|  +++|||+|  +||.|+|++||++|++.+|+      |+|+.--.
T Consensus        25 v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf--~Gk~L~D~~tL~dy~i~~g~~~~~~~tmHlVvrp   94 (101)
T d1se9a_          25 FPDATTVSALKETVISEWPREKENGPKTVKEVKLIS--AGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQA   94 (101)
T ss_dssp             ECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEE--TTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECC
T ss_pred             cCccCHHHHHHHHHHHhccccccCCCCCcccEEEEE--CCeEecCCCCHHHcCCCCCCcCCCceEEEEEeCC
Confidence            47899999999999874    25787  88999999  99999999999999999996      88875433

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=7.9e-12  Score=92.47  Aligned_cols=60  Identities=18%  Similarity=0.315  Sum_probs=52.4

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCc-------ccC-CchhhhhcCCCCCceEEEecCCCcc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGK-------ILK-DSDDIKSLGLKNGDMVFIKDLGPQI   63 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk-------~L~-d~ktL~~ygv~~~~tl~vkdlg~qi   63 (233)
                      |++++||.+||.+|++. .|+|+++|||.|  .|+       .|+ |+++|.+||++||++|+|+|-+|+=
T Consensus        29 v~~~~TV~~LK~~i~~~-~gip~~~qrL~y--~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~~~~P~~   96 (97)
T d1wjna_          29 LPDSMTVQKVKGLLSRL-LKVPVSELLLSY--ESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSGPSS   96 (97)
T ss_dssp             EETTSBHHHHHHHHHTT-TTCCTTTCEEEE--ECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCSSCC
T ss_pred             cCCCCCHHHHHHHHHHH-HCcChHHeEEEe--cCCCCCcccceecCCCcCHhhccCCCCCEEEEEeCCCCC
Confidence            46789999999999999 799999999999  343       254 6789999999999999999999964

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.4e-11  Score=89.27  Aligned_cols=55  Identities=18%  Similarity=0.304  Sum_probs=47.2

Q ss_pred             CCCcccHHHHHHHHHHHhC-CCCcCceeEEEcCCCcccCCchhhhhcCCC--CCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKS-QLYPDRQAVRLEIKGKILKDSDDIKSLGLK--NGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~-~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~--~~~tl~vk   57 (233)
                      +++++||++||++|+++.. ++++++|||+|  +||.|+|+++|+||+.+  ++.+||+.
T Consensus        26 v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy--~Gk~L~D~~~L~d~~~~~~~~~viHLV   83 (93)
T d1wgda_          26 GDRGWSVGHLKAHLSRVYPERPRPEDQRLIY--SGKLLLDHQCLRDLLPKQEKRHVLHLV   83 (93)
T ss_dssp             CCTTSCHHHHHHHHHHHSTTCCCTTTCEEEE--TTEECCSSSCHHHHSCSSSCSEEEEEE
T ss_pred             cCCCCcHHHHHHHHHHHcCCCCChHHEEEEE--CCeEccCCCCHHHhCcccCCCCEEEEE
Confidence            5789999999999999842 48999999999  99999999999999764  44588863

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.9e-12  Score=97.35  Aligned_cols=53  Identities=28%  Similarity=0.465  Sum_probs=49.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCcee---------------EEEcCCCcccCCc-hhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQA---------------VRLEIKGKILKDS-DDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQr---------------L~~~~~Gk~L~d~-ktL~~ygv~~~~tl~v   56 (233)
                      |++++||+|||++|+++ .++|++|||               |+|  +|+.|+|+ .+|++|||++|+||++
T Consensus        24 V~~~~TV~~LK~~I~~~-~~ip~~~Qr~~~~~~~~~~~~~~~Li~--~G~~L~d~~~tL~~~gI~~g~~l~l   92 (105)
T d1v2ya_          24 VVQNATVLDLKKAIQRY-VQLKQEREGGVQHISWSYVWRTYHLTS--AGEKLTEDRKKLRDYGIRNRDEVSF   92 (105)
T ss_dssp             ECTTCBHHHHHHHHHHH-HHHHHHHTTCCCCCCHHHHHTTEEEES--SSCEECCSSSBHHHHTCCSSEEEEE
T ss_pred             ECCCChHHHHHHHHHHH-HCcCHHHhcccccccccccccceEEEE--CCEECcccCCCHHHcCCCCCCEEEE
Confidence            57899999999999999 899999999               999  99999765 5899999999999987

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.12  E-value=2.4e-11  Score=88.68  Aligned_cols=59  Identities=17%  Similarity=0.307  Sum_probs=50.4

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCC-Cc----ccCCchhhhhcCCCCCceEEEecCCC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIK-GK----ILKDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~-Gk----~L~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      +++.||.+||++|+.. .|+||++|||.+-.+ ++    .++|+++|.+||+++|++||+.|..+
T Consensus        23 ~~~~TV~~LK~kle~~-~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~~~   86 (90)
T d1t0ya_          23 PAGMSLNDLKKKLELV-VGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTG   86 (90)
T ss_dssp             ETTSBHHHHHHHHHHH-HCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECTT
T ss_pred             CCCCCHHHHHHHHHHH-HCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeCCC
Confidence            5789999999999999 799999999998321 11    34678899999999999999999876

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=6.9e-11  Score=87.14  Aligned_cols=51  Identities=16%  Similarity=0.227  Sum_probs=45.0

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC-CchhhhhcCCCCCceEEEe
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~-d~ktL~~ygv~~~~tl~vk   57 (233)
                      |++++||.+||++|++    .++++|||+|  +|+.|+ |+++|++|||++|++||+-
T Consensus        24 v~~~~TV~~lK~~i~~----~~~~~qrLi~--~Gk~L~dd~~tL~~y~i~~g~~v~l~   75 (95)
T d1wiaa_          24 ARPEDTVGTLKSKYFP----GQESQMKLIY--QGRLLQDPARTLSSLNITNNCVIHCH   75 (95)
T ss_dssp             ECSSSBHHHHHHHHSS----STTTTCEEEE--TTEECCCSSCBTTTTTCCTTEEEEEE
T ss_pred             ECCcCcHHHHHHHHhc----CCcceeEEEE--CCEEcccCCCCHHHcCCCCCCEEEEE
Confidence            4789999999999854    4679999999  999996 6689999999999999874

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=98.90  E-value=5.7e-10  Score=79.02  Aligned_cols=53  Identities=9%  Similarity=0.164  Sum_probs=49.9

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      |..++++..||++++++ .++++++|||+|  +|+.|+|++|+++||+++|++|++
T Consensus        20 v~~~~~~~~l~~~~~~~-~~i~~~~~~l~f--~G~~l~~~~T~~~~~i~dgd~I~v   72 (79)
T d1euvb_          20 IKKTTPLRRLMEAFAKR-QGKEMDSLRFLY--DGIRIQADQTPEDLDMEDNDIIEA   72 (79)
T ss_dssp             EETTSCTHHHHHHHHHH-TTCCGGGEEEEE--TTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             ECCCCcHHHHHHHHHHH-hCCChHhEEEEE--CCEEeCCCCCHHHCCCCCCCEEEE
Confidence            35788999999999999 899999999999  899999999999999999999976

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1.9e-08  Score=70.62  Aligned_cols=53  Identities=15%  Similarity=0.250  Sum_probs=49.4

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vk   57 (233)
                      ..++|++.|+++++++ .++++++|||+|  +|+.|++++|++++|+++|++|.+.
T Consensus        20 ~~~t~l~kl~~~y~~~-~~~~~~~~~f~f--dG~~l~~~~T~~~l~~edgD~Idv~   72 (77)
T d2uyzb1          20 KMTTHLKKLKESYCQR-QGVPMNSLRFLF--EGQRIADNHTPKELGMEEEDVIEVY   72 (77)
T ss_dssp             ETTSCTHHHHHHHHHH-HTCCGGGEEEEE--TTEECCTTCCHHHHTCCTTEEEEEE
T ss_pred             CCCChHHHHHHHHHHH-hCCChhHEEEEE--CCEECCCCCCHHHcCCCCCCEEEEE
Confidence            4688999999999999 799999999999  8999999999999999999999763

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.78  E-value=1.1e-05  Score=58.13  Aligned_cols=54  Identities=24%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             CcccHHHHHHHHHHHhCCCCcCceeEEEcC------------CCcccCC-chhhhhcCCCCCceEEEe
Q psy9586           3 GSFTVKDIKKEVHKAKSQLYPDRQAVRLEI------------KGKILKD-SDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         3 ~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~------------~Gk~L~d-~ktL~~ygv~~~~tl~vk   57 (233)
                      ++.||.|||++|+++ -++|.+.|+|..+.            .=..|+| ..+|+++|+++|+-||++
T Consensus        19 ~~~Tl~~LK~~Ie~~-L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsivyL~   85 (94)
T d1wf9a1          19 PHITVSQLKTLIQDQ-LQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLA   85 (94)
T ss_dssp             TTSBHHHHHHHHHHH-SCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECC
T ss_pred             CCCcHHHHHHHHHHH-hCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceEEEEE
Confidence            467999999999999 79999999997641            1123554 457999999999999974

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00013  Score=49.79  Aligned_cols=52  Identities=13%  Similarity=0.236  Sum_probs=47.8

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEE
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFI   56 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~v   56 (233)
                      ..+++...|.++.+++ .++++++.++.|  +|..|..++|-+++|+++|++|-+
T Consensus        19 k~~t~l~kl~~~y~~~-~~~~~~~~~f~f--dG~~i~~~~Tp~~l~med~D~Idv   70 (72)
T d1wm3a_          19 KRHTPLSKLMKAYCER-QGLSMRQIRFRF--DGQPINETDTPAQLEMEDEDTIDV   70 (72)
T ss_dssp             CTTSCTHHHHHHHHHH-HTCCTTTCEEEE--TTEECCTTCCTTTTTCCTTEEEEE
T ss_pred             cCCChHHHHHHHHHHH-hCCCccceEEEE--CCEEcCCCCCHHHcCCCCCCEEEE
Confidence            4678899999999998 799999999999  899999999999999999999865

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.59  E-value=0.077  Score=37.38  Aligned_cols=62  Identities=18%  Similarity=0.266  Sum_probs=43.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEc----------CCCcccCC------chhhhhcCCCCCceEEEecCCCcc
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLE----------IKGKILKD------SDDIKSLGLKNGDMVFIKDLGPQI   63 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~----------~~Gk~L~d------~ktL~~ygv~~~~tl~vkdlg~qi   63 (233)
                      ++++.|.+|+-+.+.++ +.+....=.|+..          ..-.+|++      +++|.|+|+++|.+|.|.|..-..
T Consensus         7 ~~~~~TL~~li~~L~e~-p~~qlk~Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLgl~dG~ei~VtD~t~p~   84 (92)
T d1y8xb1           7 FSPSAKLQEVLDYLTNS-ASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTPQ   84 (92)
T ss_dssp             CCTTCBHHHHHHHHHHC-TTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTTCSS
T ss_pred             cCCCCcHHHHHHHHhhC-hHhhccCCceeeecCCCccEEEecCcHHHHHHhhhccccCHHHhCCcCCCEEEEecCCCcc
Confidence            57899999999999987 5554444344321          12233432      358999999999999999976543

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.21  Score=33.70  Aligned_cols=54  Identities=9%  Similarity=0.041  Sum_probs=41.6

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCccc---CCchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL---KDSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L---~d~ktL~~ygv~~~~tl~vk   57 (233)
                      .+++||.+|.+-+...  +.+++.-.|.-.--.+.+   ++++||+|.|+-..++|++.
T Consensus        23 ~~~~tl~~v~~~v~~~--~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq   79 (82)
T d1h8ca_          23 LASNKLQIVFDFVASK--GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLE   79 (82)
T ss_dssp             CTTSBHHHHHHHHHHH--TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEE
T ss_pred             CCCCcHHHHHHHHHhc--CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEE
Confidence            4689999999999875  566777777654345566   34679999999999999885

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.15  Score=37.32  Aligned_cols=59  Identities=17%  Similarity=0.254  Sum_probs=44.5

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCccc---CCchhhhhcCCCCCceEEEecCCCc
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL---KDSDDIKSLGLKNGDMVFIKDLGPQ   62 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L---~d~ktL~~ygv~~~~tl~vkdlg~q   62 (233)
                      ..++||++|.+-+...  +.....-+|...--.+.|   +.++||+|.|+....+|+|+..|+.
T Consensus        61 ~~~~tl~~l~~~v~~~--~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee~~~~  122 (124)
T d1wj4a_          61 PEQAKLLALVKHVQSK--GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESGPS  122 (124)
T ss_dssp             ETTSCHHHHHHHHHHH--HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECCST
T ss_pred             CCCCcHHHHHHHHHhc--ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEecCCC
Confidence            3578999999999776  355555566543234566   3467999999999999999999885

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.80  E-value=0.33  Score=32.84  Aligned_cols=55  Identities=13%  Similarity=0.176  Sum_probs=47.3

Q ss_pred             CCCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccCCchhhhhcCCCCCceEEEec
Q psy9586           1 VSGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILKDSDDIKSLGLKNGDMVFIKD   58 (233)
Q Consensus         1 v~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~d~ktL~~ygv~~~~tl~vkd   58 (233)
                      |.|++|+.|+-++.-++ .|+++++=.|..  .+|.|+-+-.+.-.|+.+|+.+.+.-
T Consensus        17 vtP~t~l~~VL~eaC~k-~~~~~~~~~Lkh--~~k~ldLsl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1          17 VTPSTVLLQVLEDTCRR-QDFNPSEYDLKF--QRTVLDLSLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             CCTTSBHHHHHHHHHHH-TTCCGGGCEEEE--TTEEESSSCBHHHHCCCSSCEEEEEC
T ss_pred             eCCCcCHHHHHHHHHHH-hCCChhHceeee--CCEEcCccceeeecCCCCCCEEEEEE
Confidence            57899999977776666 689999989999  78999999899999999999988753

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.94  E-value=0.53  Score=32.33  Aligned_cols=58  Identities=7%  Similarity=0.118  Sum_probs=41.7

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCccc--CCchhhhhcCCCCCceEEEecCCC
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKIL--KDSDDIKSLGLKNGDMVFIKDLGP   61 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L--~d~ktL~~ygv~~~~tl~vkdlg~   61 (233)
                      .+++||++|.+-+...  +...+.-+|...--.+.+  ++++||+|.|+...++|+++...+
T Consensus        34 ~~~dtl~~l~~fv~~~--~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~~d~   93 (96)
T d2cr5a1          34 FKSWNSQVLLDWMMKV--GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKEQ   93 (96)
T ss_dssp             ESSSBTHHHHHHHHHH--TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECCC
T ss_pred             CCcccHHHHHHHHHHh--ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEecCCC
Confidence            3678999999998775  345555566543123455  346799999999999999977654

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.51  E-value=0.45  Score=32.49  Aligned_cols=55  Identities=16%  Similarity=0.242  Sum_probs=37.2

Q ss_pred             CCcccHHHHHHHHHHHhCCCCcCceeEEEcCCCcccC-CchhhhhcCCCCCceEEEe
Q psy9586           2 SGSFTVKDIKKEVHKAKSQLYPDRQAVRLEIKGKILK-DSDDIKSLGLKNGDMVFIK   57 (233)
Q Consensus         2 ~~~~TV~~LK~~i~~~~~~i~~~rQrL~~~~~Gk~L~-d~ktL~~ygv~~~~tl~vk   57 (233)
                      ++++||.||.+-+.....+.+...-.|...--.|.|+ +++||+|.|+.+ ++|.+|
T Consensus        32 ~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~-s~vl~k   87 (89)
T d1i42a_          32 NHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLN-AVIVQR   87 (89)
T ss_dssp             CSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCC-SEEEEE
T ss_pred             CCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcC-ceEEEE
Confidence            4688999999998775234545555666431245674 567999999985 555444